Query 025181
Match_columns 256
No_of_seqs 137 out of 1382
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 05:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hf7_A Putative acylhydrolase; 100.0 2.4E-32 8.2E-37 215.2 15.5 182 5-210 25-208 (209)
2 3mil_A Isoamyl acetate-hydroly 100.0 2E-31 6.7E-36 213.7 19.0 215 5-229 2-227 (240)
3 4h08_A Putative hydrolase; GDS 100.0 1.7E-30 5.8E-35 203.1 16.6 178 5-210 19-197 (200)
4 1yzf_A Lipase/acylhydrolase; s 100.0 2E-29 7E-34 195.5 17.0 180 7-210 2-189 (195)
5 3p94_A GDSL-like lipase; serin 100.0 2.1E-29 7.3E-34 197.0 15.7 179 7-210 23-202 (204)
6 3rjt_A Lipolytic protein G-D-S 100.0 1.1E-29 3.9E-34 200.0 13.7 189 4-208 6-214 (216)
7 3dci_A Arylesterase; SGNH_hydr 100.0 1.2E-29 4.1E-34 202.9 13.9 183 6-210 23-229 (232)
8 2q0q_A ARYL esterase; SGNH hyd 100.0 1.2E-29 4.2E-34 200.2 13.1 183 7-209 3-214 (216)
9 3dc7_A Putative uncharacterize 100.0 5E-29 1.7E-33 199.1 13.5 196 5-210 20-223 (232)
10 3hp4_A GDSL-esterase; psychrot 100.0 1.4E-28 4.8E-33 189.6 15.2 173 6-210 2-181 (185)
11 2hsj_A Putative platelet activ 100.0 1.6E-28 5.6E-33 193.6 15.8 180 4-207 32-213 (214)
12 1es9_A PAF-AH, platelet-activa 100.0 1.4E-28 4.9E-33 196.5 15.5 176 5-210 37-215 (232)
13 1ivn_A Thioesterase I; hydrola 100.0 4.5E-28 1.5E-32 187.7 17.0 173 7-210 2-177 (190)
14 1vjg_A Putative lipase from th 100.0 1.2E-28 4.3E-33 195.0 13.5 183 5-205 19-209 (218)
15 1fxw_F Alpha2, platelet-activa 100.0 7.3E-28 2.5E-32 192.1 15.6 176 5-210 38-216 (229)
16 3bzw_A Putative lipase; protei 100.0 5.9E-28 2E-32 197.8 12.3 202 5-210 25-262 (274)
17 1k7c_A Rhamnogalacturonan acet 99.9 5.9E-28 2E-32 193.2 10.7 186 8-210 2-215 (233)
18 3skv_A SSFX3; jelly roll, GDSL 99.9 7.7E-26 2.6E-30 192.2 18.8 192 5-215 184-383 (385)
19 2vpt_A Lipolytic enzyme; ester 99.9 1.7E-26 5.8E-31 182.4 9.7 172 4-210 3-198 (215)
20 2o14_A Hypothetical protein YX 99.9 1.9E-25 6.5E-30 190.2 13.1 185 6-210 162-362 (375)
21 1esc_A Esterase; 2.10A {Strept 99.9 4.1E-25 1.4E-29 183.6 14.7 203 7-210 6-303 (306)
22 2wao_A Endoglucanase E; plant 99.9 1.5E-23 5.3E-28 176.6 14.4 177 5-210 121-330 (341)
23 2waa_A Acetyl esterase, xylan 99.9 2.2E-22 7.6E-27 169.8 14.5 172 5-210 131-336 (347)
24 2w9x_A AXE2A, CJCE2B, putative 99.9 3.6E-21 1.2E-25 163.5 15.4 179 5-210 141-356 (366)
25 3kvn_X Esterase ESTA; beta bar 99.5 3.4E-13 1.1E-17 122.2 17.6 197 4-208 13-317 (632)
26 4i8i_A Hypothetical protein; 5 99.2 1.3E-10 4.4E-15 93.8 13.7 190 5-210 9-226 (271)
27 1zmb_A Acetylxylan esterase re 97.9 0.00012 4.3E-09 59.4 11.8 153 28-211 62-228 (290)
28 3bma_A D-alanyl-lipoteichoic a 97.4 0.0027 9.1E-08 53.7 12.0 96 99-210 275-371 (407)
29 2apj_A Putative esterase; AT4G 96.1 0.025 8.4E-07 45.1 8.3 142 26-209 98-257 (260)
30 3nvb_A Uncharacterized protein 95.0 0.047 1.6E-06 46.0 6.4 189 5-210 21-217 (387)
31 3pt5_A NANS (YJHS), A 9-O-acet 94.0 0.19 6.7E-06 41.0 7.7 115 69-209 183-332 (337)
32 3grc_A Sensor protein, kinase; 77.7 6.2 0.00021 26.9 6.1 87 1-125 1-90 (140)
33 3eod_A Protein HNR; response r 72.6 15 0.00051 24.4 6.9 87 1-125 1-89 (130)
34 3iwt_A 178AA long hypothetical 71.9 6.1 0.00021 29.0 4.9 72 4-78 13-91 (178)
35 2zay_A Response regulator rece 71.6 21 0.0007 24.3 7.6 85 4-125 6-92 (147)
36 3e59_A Pyoverdine biosynthesis 70.9 9.8 0.00033 31.0 6.2 69 89-168 80-149 (330)
37 3kto_A Response regulator rece 70.8 21 0.00072 24.0 8.7 87 1-125 1-90 (136)
38 3eul_A Possible nitrate/nitrit 67.0 18 0.00063 24.8 6.6 85 4-125 13-99 (152)
39 2pbq_A Molybdenum cofactor bio 64.4 7.8 0.00027 28.5 4.2 73 1-78 1-78 (178)
40 1jlj_A Gephyrin; globular alph 63.3 11 0.00036 28.2 4.7 69 6-78 16-88 (189)
41 3pzy_A MOG; ssgcid, seattle st 62.7 7.1 0.00024 28.4 3.6 65 8-78 11-76 (164)
42 3klo_A Transcriptional regulat 62.3 31 0.0011 25.7 7.4 90 1-126 2-94 (225)
43 3cnb_A DNA-binding response re 61.9 27 0.00093 23.4 6.6 84 5-125 7-94 (143)
44 2rjn_A Response regulator rece 60.8 25 0.00087 24.1 6.3 83 5-125 6-89 (154)
45 3hdg_A Uncharacterized protein 59.3 19 0.00066 24.1 5.3 82 6-125 7-89 (137)
46 3kbq_A Protein TA0487; structu 58.9 7.2 0.00025 28.6 3.0 66 7-78 6-72 (172)
47 3lua_A Response regulator rece 57.7 20 0.0007 24.1 5.3 40 67-125 49-91 (140)
48 3cg4_A Response regulator rece 56.7 35 0.0012 22.8 6.4 83 5-125 6-91 (142)
49 3rfq_A Pterin-4-alpha-carbinol 56.5 14 0.00049 27.4 4.3 65 8-78 34-99 (185)
50 4dkx_A RAS-related protein RAB 55.6 55 0.0019 24.6 7.7 42 68-124 85-127 (216)
51 3snk_A Response regulator CHEY 54.7 32 0.0011 23.0 5.8 41 66-125 57-97 (135)
52 2is8_A Molybdopterin biosynthe 54.4 14 0.00048 26.7 4.0 67 8-78 5-72 (164)
53 2b4a_A BH3024; flavodoxin-like 54.0 26 0.00089 23.5 5.3 84 5-125 14-99 (138)
54 2g2c_A Putative molybdenum cof 54.0 13 0.00045 26.9 3.8 68 6-78 7-79 (167)
55 1y5e_A Molybdenum cofactor bio 53.0 34 0.0012 24.7 5.9 66 7-78 16-82 (169)
56 4e7p_A Response regulator; DNA 52.2 52 0.0018 22.3 8.1 40 67-125 65-104 (150)
57 3cz5_A Two-component response 52.2 53 0.0018 22.4 7.6 84 5-125 4-89 (153)
58 2pjk_A 178AA long hypothetical 51.8 27 0.00093 25.6 5.2 69 7-78 18-91 (178)
59 1oju_A MDH, malate dehydrogena 50.4 33 0.0011 27.4 5.9 49 67-124 68-120 (294)
60 3pqe_A L-LDH, L-lactate dehydr 50.2 28 0.00095 28.3 5.5 49 67-124 72-124 (326)
61 1zz1_A Histone deacetylase-lik 50.1 30 0.001 28.7 5.7 74 47-122 235-309 (369)
62 3hhp_A Malate dehydrogenase; M 49.6 38 0.0013 27.3 6.2 48 68-124 69-120 (312)
63 3lte_A Response regulator; str 49.6 52 0.0018 21.5 6.7 86 1-124 1-89 (132)
64 1uuy_A CNX1, molybdopterin bio 49.4 29 0.00098 25.0 5.0 67 8-78 9-81 (167)
65 3ldh_A Lactate dehydrogenase; 48.6 42 0.0014 27.4 6.3 50 67-124 88-140 (330)
66 3jsz_A LGT1, putative uncharac 48.2 69 0.0024 26.5 7.3 88 104-220 154-242 (525)
67 3hdv_A Response regulator; PSI 47.7 49 0.0017 21.9 5.9 84 5-125 6-91 (136)
68 3kcn_A Adenylate cyclase homol 47.7 63 0.0022 21.9 9.5 82 6-125 4-86 (151)
69 3gvi_A Malate dehydrogenase; N 46.2 28 0.00095 28.3 4.9 49 67-124 74-126 (324)
70 3nep_X Malate dehydrogenase; h 45.6 33 0.0011 27.7 5.2 50 67-124 68-120 (314)
71 3p7m_A Malate dehydrogenase; p 44.7 48 0.0016 26.8 6.1 49 67-124 72-124 (321)
72 3q9s_A DNA-binding response re 44.5 81 0.0028 23.9 7.3 40 67-126 80-119 (249)
73 4aj2_A L-lactate dehydrogenase 44.4 37 0.0013 27.7 5.4 50 67-124 86-138 (331)
74 2kl8_A OR15; structural genomi 44.4 48 0.0016 19.6 5.9 63 94-168 11-73 (85)
75 3tl2_A Malate dehydrogenase; c 44.1 50 0.0017 26.7 6.1 49 67-124 77-129 (315)
76 1ez4_A Lactate dehydrogenase; 43.9 39 0.0013 27.3 5.4 53 67-124 71-123 (318)
77 3jte_A Response regulator rece 43.9 45 0.0015 22.3 5.2 84 6-125 3-87 (143)
78 1mld_A Malate dehydrogenase; o 43.7 46 0.0016 26.8 5.9 50 67-124 67-119 (314)
79 3r0j_A Possible two component 43.5 76 0.0026 24.0 7.0 84 5-126 22-106 (250)
80 3nhm_A Response regulator; pro 43.2 67 0.0023 21.0 9.0 82 6-125 4-87 (133)
81 4dad_A Putative pilus assembly 41.9 51 0.0017 22.2 5.3 40 67-125 66-105 (146)
82 3i42_A Response regulator rece 41.8 70 0.0024 20.7 7.5 82 6-125 3-87 (127)
83 3eqz_A Response regulator; str 41.4 72 0.0025 20.8 6.5 38 69-125 47-84 (135)
84 1ys7_A Transcriptional regulat 41.4 89 0.003 23.0 7.0 83 5-125 6-89 (233)
85 2qv0_A Protein MRKE; structura 41.1 66 0.0023 21.4 5.8 83 5-124 8-92 (143)
86 4a69_A Histone deacetylase 3,; 41.1 1.5E+02 0.0053 24.5 8.9 69 46-122 225-294 (376)
87 2x0j_A Malate dehydrogenase; o 41.1 58 0.002 26.0 6.0 49 67-124 68-120 (294)
88 3rqi_A Response regulator prot 41.1 41 0.0014 24.1 4.8 84 5-126 6-90 (184)
89 3f6c_A Positive transcription 40.0 47 0.0016 21.9 4.8 40 67-125 45-84 (134)
90 4hhu_A OR280; engineered prote 39.5 86 0.0029 21.1 9.0 19 95-113 94-112 (170)
91 4hhu_A OR280; engineered prote 39.5 86 0.0029 21.1 9.0 19 95-113 13-31 (170)
92 4a1f_A DNAB helicase, replicat 38.7 27 0.00092 28.6 3.7 64 101-173 142-205 (338)
93 1di6_A MOGA, molybdenum cofact 37.7 47 0.0016 24.7 4.7 69 6-78 5-76 (195)
94 3vku_A L-LDH, L-lactate dehydr 36.8 38 0.0013 27.5 4.3 50 67-124 75-127 (326)
95 1y6j_A L-lactate dehydrogenase 36.7 58 0.002 26.2 5.4 50 67-125 73-126 (318)
96 3hv2_A Response regulator/HD d 36.6 70 0.0024 21.7 5.3 84 5-126 13-97 (153)
97 2xxj_A L-LDH, L-lactate dehydr 36.2 67 0.0023 25.8 5.7 49 67-124 66-118 (310)
98 3men_A Acetylpolyamine aminohy 36.1 25 0.00086 29.1 3.1 67 47-121 270-336 (362)
99 1b8p_A Protein (malate dehydro 36.0 77 0.0026 25.5 6.1 49 67-124 82-135 (329)
100 3q9b_A Acetylpolyamine amidohy 35.9 35 0.0012 28.0 3.9 61 47-113 252-312 (341)
101 3n53_A Response regulator rece 35.5 96 0.0033 20.5 8.2 82 6-125 3-86 (140)
102 2qxy_A Response regulator; reg 35.4 77 0.0026 21.0 5.3 81 6-125 4-85 (142)
103 3nl6_A Thiamine biosynthetic b 35.3 63 0.0022 28.3 5.7 39 150-195 55-95 (540)
104 2d4a_B Malate dehydrogenase; a 34.8 87 0.003 25.0 6.1 49 67-124 66-118 (308)
105 2zqz_A L-LDH, L-lactate dehydr 34.3 62 0.0021 26.2 5.2 48 68-124 76-127 (326)
106 5mdh_A Malate dehydrogenase; o 34.0 1.1E+02 0.0039 24.7 6.8 50 67-124 78-131 (333)
107 1qkk_A DCTD, C4-dicarboxylate 34.0 55 0.0019 22.3 4.4 41 66-125 45-85 (155)
108 3cu5_A Two component transcrip 33.6 88 0.003 20.9 5.4 40 67-125 48-87 (141)
109 3d0o_A L-LDH 1, L-lactate dehy 33.2 47 0.0016 26.8 4.3 50 67-125 73-126 (317)
110 3o63_A Probable thiamine-phosp 32.2 42 0.0014 26.0 3.7 39 149-194 81-121 (243)
111 1o6z_A MDH, malate dehydrogena 32.2 93 0.0032 24.7 5.9 49 67-124 69-121 (303)
112 3cg0_A Response regulator rece 32.1 1.1E+02 0.0037 20.1 7.1 83 5-125 8-92 (140)
113 2rdm_A Response regulator rece 31.5 80 0.0027 20.5 4.8 83 6-125 5-89 (132)
114 3hzh_A Chemotaxis response reg 31.0 46 0.0016 22.9 3.6 85 6-125 36-121 (157)
115 3fi9_A Malate dehydrogenase; s 30.6 51 0.0018 27.0 4.1 48 68-124 76-128 (343)
116 2gkg_A Response regulator homo 30.5 1.1E+02 0.0037 19.5 6.3 77 7-121 6-86 (127)
117 1smk_A Malate dehydrogenase, g 30.4 1.1E+02 0.0037 24.6 6.1 50 67-124 75-127 (326)
118 1ldn_A L-lactate dehydrogenase 29.3 1.2E+02 0.004 24.3 6.1 50 67-124 73-125 (316)
119 4h7p_A Malate dehydrogenase; s 29.3 1.2E+02 0.0041 24.8 6.2 49 67-124 99-152 (345)
120 1dbw_A Transcriptional regulat 29.1 1E+02 0.0034 19.9 4.9 40 67-125 46-85 (126)
121 1srr_A SPO0F, sporulation resp 27.8 1.1E+02 0.0036 19.7 4.9 81 7-125 4-85 (124)
122 3b2n_A Uncharacterized protein 27.7 84 0.0029 20.7 4.4 39 68-125 49-87 (133)
123 7mdh_A Protein (malate dehydro 27.5 1E+02 0.0036 25.5 5.5 48 68-124 108-160 (375)
124 3kyj_B CHEY6 protein, putative 27.1 86 0.0029 21.0 4.4 82 5-123 12-95 (145)
125 1tmy_A CHEY protein, TMY; chem 26.6 97 0.0033 19.7 4.5 82 7-125 3-85 (120)
126 2aee_A OPRT, oprtase, orotate 26.5 1.1E+02 0.0037 22.8 5.1 57 154-210 7-65 (211)
127 1guz_A Malate dehydrogenase; o 26.1 1.4E+02 0.0049 23.7 6.0 50 67-125 68-121 (310)
128 2qr3_A Two-component system re 25.0 78 0.0027 20.9 3.8 86 6-124 3-89 (140)
129 3ilh_A Two component response 24.8 1.5E+02 0.0052 19.4 8.9 89 5-125 8-102 (146)
130 4hty_A Cellulase; (alpha/beta) 24.5 2.8E+02 0.0096 22.4 7.8 67 51-121 162-228 (359)
131 3a10_A Response regulator; pho 24.5 92 0.0031 19.6 4.0 40 67-125 44-83 (116)
132 3gt7_A Sensor protein; structu 24.2 1.7E+02 0.0058 19.7 8.3 83 5-125 6-91 (154)
133 3q3j_B RHO-related GTP-binding 23.9 1.7E+02 0.0058 21.4 5.8 43 67-123 97-139 (214)
134 2qsj_A DNA-binding response re 23.6 68 0.0023 21.8 3.3 40 67-125 49-88 (154)
135 1mkz_A Molybdenum cofactor bio 23.2 1.1E+02 0.0037 22.0 4.4 64 9-78 15-79 (172)
136 3heb_A Response regulator rece 22.9 1.1E+02 0.0038 20.6 4.3 41 66-125 57-99 (152)
137 2lpm_A Two-component response 22.8 1.8E+02 0.0061 19.5 5.6 58 5-80 7-65 (123)
138 2hjr_A Malate dehydrogenase; m 22.6 1.9E+02 0.0064 23.3 6.1 50 67-124 81-133 (328)
139 3bh0_A DNAB-like replicative h 22.4 2.3E+02 0.0079 22.4 6.6 27 147-173 204-230 (315)
140 1mvo_A PHOP response regulator 22.4 1.5E+02 0.0051 19.3 4.9 40 67-125 46-85 (136)
141 1yio_A Response regulatory pro 22.2 1.3E+02 0.0046 21.5 4.9 41 66-125 46-86 (208)
142 3clw_A Conserved exported prot 22.0 3.8E+02 0.013 23.0 10.0 26 186-211 197-222 (507)
143 3crn_A Response regulator rece 21.9 1.4E+02 0.0046 19.5 4.5 82 6-125 3-85 (132)
144 2p10_A MLL9387 protein; putati 21.6 2.9E+02 0.0099 21.9 6.7 55 65-122 180-234 (286)
145 1kgs_A DRRD, DNA binding respo 21.4 1.4E+02 0.0048 21.7 4.9 40 67-125 45-84 (225)
146 3u95_A Glycoside hydrolase, fa 21.4 2.6E+02 0.0087 24.0 7.0 27 99-125 136-162 (477)
147 3kht_A Response regulator; PSI 21.3 98 0.0033 20.6 3.7 40 67-125 50-91 (144)
148 2pl1_A Transcriptional regulat 21.2 1.4E+02 0.0047 18.9 4.4 40 67-125 43-82 (121)
149 1pzg_A LDH, lactate dehydrogen 21.1 1.8E+02 0.006 23.5 5.7 56 67-125 77-135 (331)
150 1ur5_A Malate dehydrogenase; o 21.1 96 0.0033 24.7 4.1 49 67-124 69-121 (309)
151 1c9k_A COBU, adenosylcobinamid 21.0 2.4E+02 0.0084 20.4 6.9 57 98-162 111-167 (180)
152 2jk1_A HUPR, hydrogenase trans 20.9 1.5E+02 0.0052 19.4 4.7 81 7-125 2-82 (139)
153 1t2d_A LDH-P, L-lactate dehydr 20.9 1.9E+02 0.0064 23.2 5.8 56 67-125 71-129 (322)
154 3abz_A Beta-glucosidase I; gly 20.8 87 0.003 29.2 4.1 56 67-126 572-627 (845)
155 2i2x_B MTAC, methyltransferase 20.3 2.7E+02 0.0092 21.4 6.4 65 37-126 151-215 (258)
156 2ayx_A Sensor kinase protein R 20.3 2.8E+02 0.0096 20.9 9.2 84 6-126 129-212 (254)
157 3bgw_A DNAB-like replicative h 20.3 3.2E+02 0.011 23.0 7.3 27 147-173 333-359 (444)
158 2j48_A Two-component sensor ki 20.3 1.5E+02 0.0051 18.3 4.4 81 7-125 2-85 (119)
159 3h1g_A Chemotaxis protein CHEY 20.2 1.8E+02 0.0063 18.7 5.5 40 67-125 50-91 (129)
No 1
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-32 Score=215.21 Aligned_cols=182 Identities=19% Similarity=0.275 Sum_probs=146.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..++|+++|||+|+ +|...+.+.++. ..++|+|++|.++.+++.++++.+. ..+||+|+|++|+||+...
T Consensus 25 ~~~~Iv~~GDSit~------gw~~~~~~~~~~-~~viN~Gi~G~tt~~~l~r~~~~v~---~~~Pd~vvi~~G~ND~~~~ 94 (209)
T 4hf7_A 25 KEKRVVFMGNXITE------GWVRTHPDFFKT-NGYIGRGISGQTSYQFLLRFREDVI---NLSPALVVINAGTNDVAEN 94 (209)
T ss_dssp GGCCEEEEESHHHH------HHHHHCHHHHHH-HTEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEECCCHHHHTTS
T ss_pred CCCeEEEECcHHHh------ChhHHHHHhcCC-CCEEEeccCcccHHHHHHHHHHHHH---hcCCCEEEEEeCCCcCccc
Confidence 45789999999998 576666666653 4699999999999999999988652 5689999999999998642
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG 164 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~ 164 (256)
. .....+.+.+++.++++.++. ++++|++++++|......... ....++.+.+||+.++++|++++
T Consensus 95 ~-----~~~~~~~~~~~l~~ii~~~~~--~~~~iil~~~~P~~~~~~~~~-------~~~~~~~i~~~n~~i~~~a~~~~ 160 (209)
T 4hf7_A 95 T-----GAYNEDYTFGNIASMAELAKA--NKIKVILTSVLPAAEFPWRRE-------IKDAPQKIQSLNARIEAYAKANK 160 (209)
T ss_dssp S-----SSCCHHHHHHHHHHHHHHHHH--TTCEEEEECCCCCSCCTTCTT-------CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred c-----ccccHHHHHHHHHHhhHHHhc--cCceEEEEeeeccCccccccc-------ccchhHHHHHHHHHHHHHHHhcC
Confidence 2 234578899999999998887 789999999988754433221 11446778999999999999999
Q ss_pred CeEEechhHhhccc--ccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 165 VKVVDLFTAIQKRD--DWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 165 v~~vD~~~~~~~~~--~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+.|||++..+.... .....++.||+|||++||++||+.|.+.|++.
T Consensus 161 v~~iD~~~~~~~~~~~~~~~~~~~DglHpn~~Gy~~~a~~i~~~l~k~ 208 (209)
T 4hf7_A 161 IPFVNYYQPMVVGENKALNPQYTKDGVHPTGEGYDIMEALIKQAIEKA 208 (209)
T ss_dssp CCEECSHHHHEETTTTEECGGGBSSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred CeEeecHHHHhcccccccCcccCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999875432 22334568999999999999999999999874
No 2
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-31 Score=213.69 Aligned_cols=215 Identities=34% Similarity=0.527 Sum_probs=170.1
Q ss_pred CCceEEEEcccccccccCC---------CChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEE
Q 025181 5 ARPQFVLFGSSIVQLSFSN---------GGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVY 75 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~---------~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~ 75 (256)
..++|+++|||+|++++.. .+|...|++.+...+.+.|.|++|.++.....++++.+.. ..+||+|+|+
T Consensus 2 ~~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~--~~~pd~vvi~ 79 (240)
T 3mil_A 2 DYEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPEILKH--ESNIVMATIF 79 (240)
T ss_dssp CCEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHHHHHH--CCCEEEEEEE
T ss_pred CcccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHHHhcc--cCCCCEEEEE
Confidence 3579999999999944422 2499999999987889999999999999999988876532 2589999999
Q ss_pred eccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCcc-chhhhhhhHHHHHHHHH
Q 025181 76 VGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSE-IFSELVRTNELCQKYSD 154 (256)
Q Consensus 76 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~ 154 (256)
+|+||..... ....+.++|.++++++++.+++. +++|++++++|+........... ........++.+++||+
T Consensus 80 ~G~ND~~~~~----~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 153 (240)
T 3mil_A 80 LGANDACSAG----PQSVPLPEFIDNIRQMVSLMKSY--HIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSD 153 (240)
T ss_dssp CCTTTTSSSS----TTCCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHH
T ss_pred eecCcCCccC----CCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHH
Confidence 9999996521 23567899999999999999996 47999999999866543221100 00112356788999999
Q ss_pred HHHHHHHHhCCeEEechhHhhcccc-cccccccccccCChhHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCC
Q 025181 155 ACINLCHELGVKVVDLFTAIQKRDD-WKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPSLHWKSMPTEFSEDS 229 (256)
Q Consensus 155 ~l~~~~~~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~~~~~~~~~~~p~~~~~~~ 229 (256)
.++++|+++++.|||++..+.+... ....++.||+|||++||++||+.+++.|++. .|.+.++.+|..+|.-.
T Consensus 154 ~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~~--~p~~~~~~~p~~~p~~~ 227 (240)
T 3mil_A 154 ALAKLANEEKVPFVALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLKVIETF--YPQYHPKNMQYKLKDWR 227 (240)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHHGGGGGGGBSSSSSBCHHHHHHHHHHHHHHHHHH--CGGGSGGGSCCCSCCGG
T ss_pred HHHHHHHHhCCeEEehHHHHhhcCCccHhhccCCCCCcCHHHHHHHHHHHHHHHHHh--ccccChhhCCCCCCChh
Confidence 9999999999999999999876432 2234578999999999999999999999986 67888888887776644
No 3
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.7e-30 Score=203.10 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=145.9
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCC-chHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGW-NSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~-~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
..|||++||||+|. ||...+++.+.....+.+.+.+|. ++.....++++.+. ..+||+|+|++|+||..
T Consensus 19 ~~prVl~iGDSit~------G~~~~l~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~pd~Vvi~~G~ND~~- 88 (200)
T 4h08_A 19 DLPHVLLIGNSITR------GYYGKVEAALKEKAYVGRLSNSKSVGDPALIEELAVVLK---NTKFDVIHFNNGLHGFD- 88 (200)
T ss_dssp SSCEEEEEESHHHH------HHHHHHHHHTTTTCEEEEEEESCCTTCHHHHHHHHHHHH---HSCCSEEEECCCSSCTT-
T ss_pred CCCeEEEEchhHHh------hhHHHHHHHhccCCeEEEEeccCCccHHHHHHHHHHHHh---cCCCCeEEEEeeeCCCC-
Confidence 46799999999998 688889999987777888887655 45556666766553 46899999999999963
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL 163 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~ 163 (256)
.+.++|.++++++++.+++.+|+++|++++++|+....... .....+..+.+||++++++|+++
T Consensus 89 ---------~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~-------~~~~~~~~~~~~n~~~~~~a~~~ 152 (200)
T 4h08_A 89 ---------YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMK-------EFAPITERLNVRNQIALKHINRA 152 (200)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGC-------EECTHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCccccccc-------ccchhHHHHHHHHHHHHHHhhhc
Confidence 35799999999999999999999999999998875433221 12256778899999999999999
Q ss_pred CCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 164 GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 164 ~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+++|+|++..+.+... ..+..||+|||++||++||+.|++.|++.
T Consensus 153 ~v~~iD~~~~~~~~~~--~~~~~Dg~Hpn~~Gy~~~A~~i~~~i~~~ 197 (200)
T 4h08_A 153 SIEVNDLWKVVIDHPE--YYAGGDGTHPIDAGYSALANQVIKVIKNV 197 (200)
T ss_dssp TCEEECHHHHHTTCGG--GTTTSCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecHHhHhcCHH--HhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998876432 23457999999999999999999999975
No 4
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=99.97 E-value=2e-29 Score=195.48 Aligned_cols=180 Identities=21% Similarity=0.353 Sum_probs=147.2
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHh----hc----cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIY----AR----KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~----~~----~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
++|+++|||+|.|.. .++|...+.+.+ +. .+.+.|.|++|.++.+...++++.+. ..+||+|+|++|+
T Consensus 2 ~~i~~~GDS~t~g~~-~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ 77 (195)
T 1yzf_A 2 RKIVLFGDSITAGYL-DEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVL---IEKPDEVVIFFGA 77 (195)
T ss_dssp EEEEEEESHHHHCBT-TBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEEECCT
T ss_pred CeEEEEccccccCcC-CCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhh---hcCCCEEEEEeec
Confidence 589999999998643 456655555444 32 37899999999999999999888663 4689999999999
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHH
Q 025181 79 NDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACIN 158 (256)
Q Consensus 79 ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~ 158 (256)
||... ....+.+.|.+++.++++.++ +++|++++++|...... ....+..+..||+.+++
T Consensus 78 ND~~~------~~~~~~~~~~~~l~~~i~~~~----~~~vi~~~~~p~~~~~~----------~~~~~~~~~~~n~~~~~ 137 (195)
T 1yzf_A 78 NDASL------DRNITVATFRENLETMIHEIG----SEKVILITPPYADSGRR----------PERPQTRIKELVKVAQE 137 (195)
T ss_dssp TTTCT------TSCCCHHHHHHHHHHHHHHHC----GGGEEEECCCCCCTTTC----------TTSCHHHHHHHHHHHHH
T ss_pred cccCc------cCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCCCccccc----------hhhhHHHHHHHHHHHHH
Confidence 99862 124568999999999999987 58999999998754311 11456778999999999
Q ss_pred HHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 159 LCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 159 ~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+|+++++.|||++..+.+...+...+..||+|||++||+++|+.+++.|++.
T Consensus 138 ~a~~~~~~~iD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~l~~~ 189 (195)
T 1yzf_A 138 VGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGALIVREIKGR 189 (195)
T ss_dssp HHHHTTCCEECHHHHHHHSTTGGGGBCTTSSSBCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhCCeEEehHHHHhhcCCccccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877666566779999999999999999999999975
No 5
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=99.96 E-value=2.1e-29 Score=197.03 Aligned_cols=179 Identities=22% Similarity=0.332 Sum_probs=144.4
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHP 86 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~ 86 (256)
.+|+++|||+|+ +|...+.+.+.. ..+.|.|++|.++.++..++.+.+. ..+||+|+|++|+||.....
T Consensus 23 ~~i~~~GDSit~------g~~~~~~~~~~~-~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~~- 91 (204)
T 3p94_A 23 SNVVFMGNSITD------GWWPADSTFFIR-NNFVDRGISGQTTSEMLVRFRQDVI---NLKPKAVVILAGINDIAHNN- 91 (204)
T ss_dssp EEEEEEESHHHH------THHHHCTTHHHH-HTEEEEECTTCCHHHHHHHHHHHTG---GGCEEEEEEECCHHHHTTTT-
T ss_pred ceEEEEccchhh------cccchHHHhccc-CceEEcccCcccHHHHHHHHHHHHH---hCCCCEEEEEeecCcccccc-
Confidence 399999999998 455555555543 3789999999999999999887653 46799999999999997532
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCe
Q 025181 87 SGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVK 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~ 166 (256)
...+.+.|.++++++++.+++ ++++|++++++|.......+.. ..+..+..||+.++++|+++++.
T Consensus 92 ----~~~~~~~~~~~~~~~i~~~~~--~~~~vil~~~~p~~~~~~~~~~--------~~~~~~~~~n~~l~~~a~~~~v~ 157 (204)
T 3p94_A 92 ----GVIALENVFGNLVSMAELAKA--NHIKVIFCSVLPAYDFPWRPGM--------QPADKVIQLNKWIKEYADKNGLT 157 (204)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHHH--TTCEEEEECCCCCSCBTTBTTC--------CCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ----CCCCHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCccc--------cHHHHHHHHHHHHHHHHHHcCCc
Confidence 124689999999999999998 7899999999887543322110 34567899999999999999999
Q ss_pred EEechhHhhccccc-ccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 167 VVDLFTAIQKRDDW-KNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 167 ~vD~~~~~~~~~~~-~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
|||++..+.+.... ...+..||+|||++||++||+.+++.|++.
T Consensus 158 ~iD~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~l~~~l~~~ 202 (204)
T 3p94_A 158 YVDYHSAMKDERNGLPANLSKDGVHPTLEGYKIMEKIVLEAIHKT 202 (204)
T ss_dssp EECHHHHHCCTTSSCCTTTBSSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred EEchhhhhhcccccccccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999998765433 334578999999999999999999999874
No 6
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=99.96 E-value=1.1e-29 Score=200.02 Aligned_cols=189 Identities=17% Similarity=0.229 Sum_probs=148.5
Q ss_pred CCCceEEEEcccccccccC-----------CCChHHHHHHHhhc-----cccEeecCCCCCchHHHHHHhhhhCCCCCCC
Q 025181 4 PARPQFVLFGSSIVQLSFS-----------NGGWGAILSDIYAR-----KADILLRGYYGWNSRRALQVLDQVFPKDAPI 67 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~-----------~~~~~~~l~~~~~~-----~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~ 67 (256)
++.++|+++|||+|+|.+. ..+|+..|++.+.. .+.+.|.|++|.++.+...++.+.+. ..
T Consensus 6 ~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~---~~ 82 (216)
T 3rjt_A 6 EPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVM---AL 82 (216)
T ss_dssp CTTCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTG---GG
T ss_pred CCCCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHh---hc
Confidence 4677999999999987543 46799999988864 37899999999999999998876553 46
Q ss_pred CCcEEEEEeccCCCCCCCCCC--CCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhh
Q 025181 68 QPSLVIVYVGGNDSMGPHPSG--LGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRT 145 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~--~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~ 145 (256)
+||+|+|++|+||........ .....+.+.|.++++++++.+++. +++|+++++++...... ...
T Consensus 83 ~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~p~~~~~~~~-----------~~~ 149 (216)
T 3rjt_A 83 QPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR--VREMFLLSPFYLEPNRS-----------DPM 149 (216)
T ss_dssp CCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG--SSEEEEECCCCCCCCTT-----------SHH
T ss_pred CCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc--CCeEEEECCCcCCCCcc-----------hHH
Confidence 799999999999986421100 001456899999999999999997 68999998654322111 024
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEechhHhhcc--cccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 146 NELCQKYSDACINLCHELGVKVVDLFTAIQKR--DDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 146 ~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~--~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
+..+.+||+.++++|+++++.|||++..+.+. ......+..||+|||++||++||+.+++.|.
T Consensus 150 ~~~~~~~n~~~~~~a~~~~~~~vD~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~ 214 (216)
T 3rjt_A 150 RKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVG 214 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHTTSCHHHHCSSSSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEcHHHHHHHHhcCCCcccccCCcCCChHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999998764 2222345689999999999999999999875
No 7
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.2e-29 Score=202.88 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=147.6
Q ss_pred CceEEEEcccccccccC--------CCChHHHHHHHhhccccEeecCCCCCchH----------HHHHHhhhhCCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFS--------NGGWGAILSDIYARKADILLRGYYGWNSR----------RALQVLDQVFPKDAPI 67 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~--------~~~~~~~l~~~~~~~~~v~n~g~~G~~s~----------~~~~~~~~~~~~~~~~ 67 (256)
.++|+++|||+|+|... ..+|+..|++.++..+.+.|.|++|.++. ....++++.+. ..
T Consensus 23 ~~~I~~lGDSit~G~~~~~~~~~~~~~~w~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~l~~~l~---~~ 99 (232)
T 3dci_A 23 MKTVLAFGDSLTWGADPATGLRHPVEHRWPDVLEAELAGKAKVHPEGLGGRTTCYDDHAGPACRNGARALEVALS---CH 99 (232)
T ss_dssp CEEEEEEESHHHHTBCTTTCCBCCGGGSHHHHHHHHHTTSEEEEEEECTTCBSSCCCCSSSSCCBHHHHHHHHHH---HH
T ss_pred CCEEEEEECccccCCCCCCcccCCcCCccHHHHHHHhCCCCeEEEcccCCccccccCcccccchhHHHHHHHHHh---hC
Confidence 46899999999986543 25899999999987889999999999986 66777776553 34
Q ss_pred CC-cEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-----CCceEEEEcCCCCChhhhhcCCccchhh
Q 025181 68 QP-SLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-----CATRIIFLSTPPVDEARINQGTSEIFSE 141 (256)
Q Consensus 68 ~p-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-----~~~~vi~~~~~p~~~~~~~~~~~~~~~~ 141 (256)
+| |+|+|++|+||+.... ..+.++|.++++++++.+++.+ |+++|++++++++........ ..
T Consensus 100 ~p~d~VvI~~GtND~~~~~------~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~~~~~~~~~-----~~ 168 (232)
T 3dci_A 100 MPLDLVIIMLGTNDIKPVH------GGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPCVAGPGGEP-----AG 168 (232)
T ss_dssp CSCSEEEEECCTTTTSGGG------TSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCCCCCTTSSC-----GG
T ss_pred CCCCEEEEEeccCCCcccc------CCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCcccCccc-----cc
Confidence 77 9999999999996521 2368999999999999999987 899999999888754321000 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 142 LVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 142 ~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.........||++++++|+++++.|||++..+. .+..||+|||++||+.||+.|++.|++.
T Consensus 169 -~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~-------~~~~DgvHpn~~G~~~~A~~l~~~l~~~ 229 (232)
T 3dci_A 169 -GRDIEQSMRLAPLYRKLAAELGHHFFDAGSVAS-------ASPVDGVHLDASATAAIGRALAAPVRDI 229 (232)
T ss_dssp -GCCHHHHTTHHHHHHHHHHHHTCEEEEGGGTCC-------CCTTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHhCCeEEcchHhcC-------cccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 123567789999999999999999999976543 2458999999999999999999999874
No 8
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=99.96 E-value=1.2e-29 Score=200.25 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=145.8
Q ss_pred ceEEEEcccccccccC------------CCChHHHHHHHhhccccEeecCCCCCchH---------HHHHHhhhhCCCCC
Q 025181 7 PQFVLFGSSIVQLSFS------------NGGWGAILSDIYARKADILLRGYYGWNSR---------RALQVLDQVFPKDA 65 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~------------~~~~~~~l~~~~~~~~~v~n~g~~G~~s~---------~~~~~~~~~~~~~~ 65 (256)
++|+++|||+|.|... ..+|+..|++.++..+.+.|.|++|.++. ....+++..+.
T Consensus 3 ~~i~~~GDSit~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~l~~~l~--- 79 (216)
T 2q0q_A 3 KRILCFGDSLTWGWVPVEDGAPTERFAPDVRWTGVLAQQLGADFEVIEEGLSARTTNIDDPTDPRLNGASYLPSCLA--- 79 (216)
T ss_dssp EEEEEEESHHHHTBCCCTTCCCBCBCCTTTSHHHHHHHHHCTTEEEEEEECTTCBSSCCBTTBTTCBHHHHHHHHHH---
T ss_pred ceEEEEecCcccCcCCCCCccccccCCcccchHHHHHHHhCCCCeEEecCcCcccccccCCccccccHHHHHHHHHH---
Confidence 6899999999986542 34699999999977788999999999987 45666666542
Q ss_pred CCCC-cEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-------CCceEEEEcCCCCChhhhhcCCcc
Q 025181 66 PIQP-SLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-------CATRIIFLSTPPVDEARINQGTSE 137 (256)
Q Consensus 66 ~~~p-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-------~~~~vi~~~~~p~~~~~~~~~~~~ 137 (256)
..+| |+|+|++|+||.... ...+.+++.++++++++.+++.. |+++|+++++|+.... ... .
T Consensus 80 ~~~p~d~vvi~~G~ND~~~~------~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~-~~~---~ 149 (216)
T 2q0q_A 80 THLPLDLVIIMLGTNDTKAY------FRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPM-PHP---W 149 (216)
T ss_dssp HHCSCSEEEEECCTGGGSGG------GCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCC-CSH---H
T ss_pred hCCCCCEEEEEecCcccchh------cCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcc-cCC---c
Confidence 2466 999999999998531 13568999999999999999998 8899999998887542 000 0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 138 IFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 138 ~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
........+....+||++++++|+++++.|||++..+.. +..||+|||++||++||+.|++.|++
T Consensus 150 ~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~~-------~~~Dg~Hpn~~G~~~~a~~i~~~l~~ 214 (216)
T 2q0q_A 150 FQLIFEGGEQKTTELARVYSALASFMKVPFFDAGSVIST-------DGVDGIHFTEANNRDLGVALAEQVRS 214 (216)
T ss_dssp HHHHTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGGTCCC-------CSTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHcCCcEEchhHhccc-------CCCCccCcCHHHHHHHHHHHHHHHHH
Confidence 001111345678899999999999999999999887653 45899999999999999999999986
No 9
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=99.96 E-value=5e-29 Score=199.08 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=149.0
Q ss_pred CCceEEEEccccccccc-CCCChHHHHHHHhhccccEeecCCCCCchHH----HHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 5 ARPQFVLFGSSIVQLSF-SNGGWGAILSDIYARKADILLRGYYGWNSRR----ALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~-~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~----~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
...+|+++|||+|+|.+ ...+|+..|++.++ ...+.|.|++|.++.+ ...++.+ + ..+||+|+|++|+|
T Consensus 20 ~~~~i~~lGDSit~G~g~~~~~~~~~l~~~l~-~~~v~N~g~~G~t~~~~~~~~~~~~~~-~----~~~pd~Vii~~G~N 93 (232)
T 3dc7_A 20 SFKRPAWLGDSITANNGLATVHYHDILAADWD-VERSDNLGISGSTIGSRYDAMAVRYQA-I----PEDADFIAVFGGVN 93 (232)
T ss_dssp CCSSEEEEESTTTSTTCSSSSCHHHHHHHHHT-CSCCEEEECTTCCSSTTSSCHHHHGGG-S----CTTCSEEEEECCHH
T ss_pred CcceEEEEcccccccCCCCCCcHHHHHHHHhC-CceeEEeeeCCcccccChHHHHHHHHh-c----CCCCCEEEEEEecc
Confidence 35689999999998643 22389999999885 4579999999999984 6666655 2 35899999999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHH
Q 025181 80 DSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINL 159 (256)
Q Consensus 80 D~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~ 159 (256)
|+......+.......+.|..+++++++.+++.+|+++|+++++++......... . ......+..+.+||++++++
T Consensus 94 D~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~i~~~ 169 (232)
T 3dc7_A 94 DYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSF--S--AVTNGLGYRQSDYEAAIAQM 169 (232)
T ss_dssp HHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTB--C--SSCCTTSCCHHHHHHHHHHH
T ss_pred ccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcc--c--ccccccchHHHHHHHHHHHH
Confidence 9876332222333566789999999999999999999999999887643211100 0 00112345578999999999
Q ss_pred HHHhCCeEEechhHhhccc---ccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 160 CHELGVKVVDLFTAIQKRD---DWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 160 ~~~~~v~~vD~~~~~~~~~---~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
|++++++|||++..+.... .....+..||+|||++||++||+.|.+.|++.
T Consensus 170 a~~~~v~~iD~~~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~iA~~i~~~l~~~ 223 (232)
T 3dc7_A 170 TADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSH 223 (232)
T ss_dssp HHHHTCCEEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEecccccCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864221 11234568999999999999999999999986
No 10
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=99.96 E-value=1.4e-28 Score=189.63 Aligned_cols=173 Identities=15% Similarity=0.311 Sum_probs=140.1
Q ss_pred CceEEEEccccccccc--CCCChHHHHHHHhhc---cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 6 RPQFVLFGSSIVQLSF--SNGGWGAILSDIYAR---KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~--~~~~~~~~l~~~~~~---~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
+++|+++|||+|+|.+ ...+|+..+++.+.. .+.+.|.|++|.++.+...+++..+. ..+||+|+|++|+||
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND 78 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLE---QYEPTHVLIELGAND 78 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHH---HHCCSEEEEECCHHH
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHh---hcCCCEEEEEeeccc
Confidence 5799999999998644 235899999998864 47899999999999999999888663 348999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC--CCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHH
Q 025181 81 SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST--PPVDEARINQGTSEIFSELVRTNELCQKYSDACIN 158 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~ 158 (256)
... ..+.++|.++++++++.+++. +++|++++. |+.. ......+||+.+++
T Consensus 79 ~~~--------~~~~~~~~~~~~~~i~~~~~~--~~~vvl~~~~~p~~~-----------------~~~~~~~~~~~~~~ 131 (185)
T 3hp4_A 79 GLR--------GFPVKKMQTNLTALVKKSQAA--NAMTALMEIYIPPNY-----------------GPRYSKMFTSSFTQ 131 (185)
T ss_dssp HHT--------TCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSTT-----------------CHHHHHHHHHHHHH
T ss_pred CCC--------CcCHHHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCcc-----------------cHHHHHHHHHHHHH
Confidence 853 456899999999999999996 578888875 3311 12345799999999
Q ss_pred HHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 159 LCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 159 ~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+|++++++|+|++...... ....+..||+|||++||+.||+.+++.|++.
T Consensus 132 ~a~~~~~~~vd~~~~~~~~--~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~~ 181 (185)
T 3hp4_A 132 ISEDTNAHLMNFFMLDIAG--KSDLMQNDSLHPNKKAQPLIRDEMYDSIKKW 181 (185)
T ss_dssp HHHHHCCEEECCTTTTTTT--CGGGBCTTSSSBCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEcchhhhcCC--CcccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999997653321 1223468999999999999999999999863
No 11
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=99.96 E-value=1.6e-28 Score=193.58 Aligned_cols=180 Identities=26% Similarity=0.364 Sum_probs=144.8
Q ss_pred CCCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 4 PARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
+...+|+++|||+|+|. +|.. .++....+.|.|++|.++.+...++++.+. ..+||+|+|++|+||...
T Consensus 32 ~~~~~i~~~GDSit~g~----~~~~----~l~~~~~v~n~g~~G~~~~~~~~~l~~~~~---~~~pd~vvi~~G~ND~~~ 100 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYY----PLQE----LFGTSKTIVNRGIRGYQTGLLLENLDAHLY---GGAVDKIFLLIGTNDIGK 100 (214)
T ss_dssp SSCCSEEEEESHHHHTC----CHHH----HHCSSSCEEEEECTTCCHHHHHHTGGGGCC---CSCCCEEEEECCHHHHHT
T ss_pred cccCCEEEEecchhcCC----CHHH----HcCCcceEEecCccchhHHHHHHHhhHHHH---hcCCCEEEEEEecCcCCc
Confidence 45678999999999854 4554 444456788999999999999988887553 468999999999999854
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL 163 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~ 163 (256)
..+.+++.+++.++++.+++..|+++|++++++|......... ......+..+..||+.++++|+++
T Consensus 101 --------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~-----~~~~~~~~~~~~~n~~l~~~a~~~ 167 (214)
T 2hsj_A 101 --------DVPVNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQ-----AVYIRSNEKIQNWNQAYQELASAY 167 (214)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHH-----HHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred --------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccccccc-----ccccccHHHHHHHHHHHHHHHHHc
Confidence 3468999999999999999999999999999998754321100 011134677899999999999999
Q ss_pred -CCeEEechhHhhccc-ccccccccccccCChhHHHHHHHHHHHHH
Q 025181 164 -GVKVVDLFTAIQKRD-DWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 164 -~v~~vD~~~~~~~~~-~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
++.|||++..+.+.. .+...++.||+|||++||++||+.+++.|
T Consensus 168 ~~~~~iD~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~l 213 (214)
T 2hsj_A 168 MQVEFVPVFDCLTDQAGQLKKEYTTDGLHLSIAGYQALSKSLKDYL 213 (214)
T ss_dssp TTEEEECCGGGSBCTTSSBCGGGBSSSSSBCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEhHHHHhCcCCchhhhccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999887643 23345678999999999999999999887
No 12
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=99.96 E-value=1.4e-28 Score=196.52 Aligned_cols=176 Identities=20% Similarity=0.266 Sum_probs=142.4
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhh-CCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQV-FPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~-~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++|||+|+|......|...+ + ...+.|.|++|.++.++..++.+. +. ..+||+|+|++|+||..
T Consensus 37 ~~~~i~~~GDSit~g~~~~~~~~~~l----~-~~~v~n~g~~G~t~~~~~~~~~~~~l~---~~~pd~vvi~~G~ND~~- 107 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLMHQCEIWRELF----S-PLHALNFGIGGDSTQHVLWRLENGELE---HIRPKIVVVWVGTNNHG- 107 (232)
T ss_dssp CCCSEEEEESHHHHTHHHHSCHHHHT----G-GGCEEEEECTTCCHHHHHHHHHTTTTT---TCCCSEEEEECCTTCTT-
T ss_pred CCCCEEEEechHhhccCccccHHHHC----C-CCceEEeecccccHHHHHHHHhcCccc---cCCCCEEEEEeecCCCC-
Confidence 35689999999998532223354443 3 467899999999999999888764 32 35899999999999984
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHH-HHHH
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACIN-LCHE 162 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~-~~~~ 162 (256)
.+.++|.+++.++++.+++.+|+++|++++++|...... ..+..+.++|+.+++ +|++
T Consensus 108 ---------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~------------~~~~~~~~~n~~l~~~~a~~ 166 (232)
T 1es9_A 108 ---------HTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPN------------PLREKNRRVNELVRAALAGH 166 (232)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCSSSCC------------HHHHHHHHHHHHHHHHHHSC
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEecCCCCCCCch------------hHHHHHHHHHHHHHHHHhhc
Confidence 457999999999999999999999999999998643211 235678899999999 8888
Q ss_pred hCCeEEechhHhhcccc-cccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 163 LGVKVVDLFTAIQKRDD-WKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 163 ~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.++.|||++..+.+... ....++.||+|||++||++||+.|.+.|++.
T Consensus 167 ~~v~~iD~~~~~~~~~g~~~~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~ 215 (232)
T 1es9_A 167 PRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRL 215 (232)
T ss_dssp TTEEEECCCCCCSCTTSCCCTTTBTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeChHHhcCCCCCcChhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999998876432 2344567999999999999999999999975
No 13
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=99.96 E-value=4.5e-28 Score=187.74 Aligned_cols=173 Identities=20% Similarity=0.319 Sum_probs=139.5
Q ss_pred ceEEEEcccccccccC--CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFS--NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
++|+++|||+|.|... ..+|+..|++.++..+.+.|.|++|.++.....+++..+. ..+||+|+|++|+||...
T Consensus 2 ~~i~~~GDSit~g~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~Vii~~G~ND~~~- 77 (190)
T 1ivn_A 2 DTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK---QHQPRWVLVELGGNDGLR- 77 (190)
T ss_dssp EEEEEEECHHHHCSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHHHHH---HHCCSEEEEECCTTTTSS-
T ss_pred CcEEEEecCcccCCCCCCCcCHHHHHHHHhccCcEEEecCCCCchHHHHHHHHHHHHH---hcCCCEEEEEeecccccc-
Confidence 6899999999986553 3589999999998768899999999999999988887653 357999999999999853
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC-CCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP-PVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL 163 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~ 163 (256)
..+.++|.++++++++.+++. +++|++++++ |... .......+|+.++++|+++
T Consensus 78 -------~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~p~~~----------------~~~~~~~~n~~~~~~a~~~ 132 (190)
T 1ivn_A 78 -------GFQPQQTEQTLRQILQDVKAA--NAEPLLMQIRLPANY----------------GRRYNEAFSAIYPKLAKEF 132 (190)
T ss_dssp -------SCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCGGG----------------CHHHHHHHHHHHHHHHHHT
T ss_pred -------CCCHHHHHHHHHHHHHHHHHc--CCCEEEEeccCCcch----------------hHHHHHHHHHHHHHHHHHc
Confidence 356899999999999999996 4788888752 3110 0134678999999999999
Q ss_pred CCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 164 GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 164 ~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
++.|||++....... ...+..||+|||++||++||+.+++.|++.
T Consensus 133 ~v~~iD~~~~~~~~~--~~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~ 177 (190)
T 1ivn_A 133 DVPLLPFFMEEVYLK--PQWMQDDGIHPNRDAQPFIADWMAKQLQPL 177 (190)
T ss_dssp TCCEECCTHHHHHTC--GGGBCTTSSSBCGGGHHHHHHHHHHHHTTT
T ss_pred CCeEEccHHhhccCC--chhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999985432211 122458999999999999999999999975
No 14
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=99.96 E-value=1.2e-28 Score=194.97 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=146.1
Q ss_pred CCceEEEEcccccccccC--CCChHHHHHHHhh---ccccEeecCCCCCchHHHHHHhhh-hCCCCCCCCCcEEEEEecc
Q 025181 5 ARPQFVLFGSSIVQLSFS--NGGWGAILSDIYA---RKADILLRGYYGWNSRRALQVLDQ-VFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~--~~~~~~~l~~~~~---~~~~v~n~g~~G~~s~~~~~~~~~-~~~~~~~~~pd~vii~~G~ 78 (256)
...+|+++|||+|+|... ..+|+..|++.+. ..+.+.|.|++|.++.++..++.. .+......+||+|+|++|+
T Consensus 19 ~~~~i~~lGDSit~g~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 98 (218)
T 1vjg_A 19 TQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGL 98 (218)
T ss_dssp EEEEEEEEESHHHHTTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCH
T ss_pred CCceEEEEccccccCCCCCCCCCHHHHHHHHHHhcCCCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEEEEecC
Confidence 457899999999996543 3579999998875 357789999999999999888866 3432223589999999999
Q ss_pred CCCCC-CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHH
Q 025181 79 NDSMG-PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACI 157 (256)
Q Consensus 79 ND~~~-~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~ 157 (256)
||... .. ....+.++|.+++.++++.+++. ++|++++++|..... . ...+..+.+||+.++
T Consensus 99 ND~~~~~~----~~~~~~~~~~~~l~~li~~l~~~---~~iil~~~~p~~~~~--~---------~~~~~~~~~~n~~l~ 160 (218)
T 1vjg_A 99 NDTTLENG----KPRVSIAETIKNTREILTQAKKL---YPVLMISPAPYIEQQ--D---------PGRRRRTIDLSQQLA 160 (218)
T ss_dssp HHHCEETT----EESSCHHHHHHHHHHHHHHHHHH---SCEEEECCCCCCCTT--C---------TTHHHHHHHHHHHHH
T ss_pred Ccchhhcc----cccCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCccccc--c---------chHHHHHHHHHHHHH
Confidence 99852 11 12456899999999999999997 789999998873200 0 024677899999999
Q ss_pred HHHHHhCCeEEechhHhhcccccccccc-cccccCChhHHHHHHHHHHH
Q 025181 158 NLCHELGVKVVDLFTAIQKRDDWKNACF-TDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 158 ~~~~~~~v~~vD~~~~~~~~~~~~~~~~-~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
++|+++++.|||++..+.+...+...++ .||+|||++||++||+.|++
T Consensus 161 ~~a~~~~v~~iD~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~~A~~i~~ 209 (218)
T 1vjg_A 161 LVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVEN 209 (218)
T ss_dssp HHHHHHTCCEECCTGGGSTTSSHHHHHHHTTSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEehHHhhccchhhhhhccccCCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999887665544455 49999999999999999987
No 15
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=99.95 E-value=7.3e-28 Score=192.12 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=142.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhh-CCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQV-FPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~-~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|++||||+|+|......|. +.++ .+.+.|.|++|.++.++..++++. +. ..+||+|+|++|+||..
T Consensus 38 ~~~~i~~~GDSit~g~~~~~~~~----~~~~-~~~v~n~g~~G~t~~~~~~~~~~~~l~---~~~pd~vvi~~G~ND~~- 108 (229)
T 1fxw_F 38 KEPDVLFVGDSMVQLMQQYEIWR----ELFS-PLHALNFGIGGDTTRHVLWRLKNGELE---NIKPKVIVVWVGTNNHE- 108 (229)
T ss_dssp CCCSEEEEESHHHHGGGGSHHHH----HHTG-GGTEEEEECTTCCHHHHHHHHHTTTTS---SCCCSEEEEECCTTCTT-
T ss_pred CCCCEEEEecchhcCCCCchhHH----HHcC-CCcceeeccCcchHHHHHHHHHcCccc---cCCCCEEEEEEecCCCC-
Confidence 35689999999998654332344 3343 467899999999999999988763 32 45899999999999982
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH-H
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH-E 162 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~-~ 162 (256)
.+.++|.+++.++++.+++.+|+++|++++++|...... ..+..+.++|+.++++|+ +
T Consensus 109 ---------~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~------------~~~~~~~~~n~~l~~~a~~~ 167 (229)
T 1fxw_F 109 ---------NTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPN------------PLRQKNAKVNQLLKVSLPKL 167 (229)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCC------------HHHHHHHHHHHHHHHHSSSS
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCCCCchh------------hHHHHHHHHHHHHHHHHhcC
Confidence 457999999999999999998999999999988643211 245678899999999997 6
Q ss_pred hCCeEEechhHhhccc-ccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 163 LGVKVVDLFTAIQKRD-DWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 163 ~~v~~vD~~~~~~~~~-~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.++.|||++..+.+.. .....++.||+|||++||+.||+.|.+.|++.
T Consensus 168 ~~v~~iD~~~~~~~~~g~~~~~~~~DgvHpn~~G~~~~a~~l~~~l~~~ 216 (229)
T 1fxw_F 168 ANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQL 216 (229)
T ss_dssp SSEEEECCCCSCBCTTSCBCTTTBTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCHHHhhccCCCcchhhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999887542 23334568999999999999999999999975
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=99.95 E-value=5.9e-28 Score=197.77 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=146.8
Q ss_pred CCceEEEEcccccccccC----CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 5 ARPQFVLFGSSIVQLSFS----NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~----~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
...+|+++|||+|+|... ..+| ..|++.++ +.+.|.|++|.++.++..++++.+.. ...+||+|+|++|+||
T Consensus 25 ~~~~iv~lGDSiT~G~~~~~~~~~~w-~~l~~~l~--~~v~N~G~~G~tt~~~~~~~~~~l~~-~~~~pd~V~I~~G~ND 100 (274)
T 3bzw_A 25 QGKKVGYIGDSITDPNCYGDNIKKYW-DFLKEWLG--ITPFVYGISGRQWDDVPRQAEKLKKE-HGGEVDAILVFMGTND 100 (274)
T ss_dssp TTCEEEEEESTTTCTTTTGGGCCCHH-HHHHHHHC--CEEEECCCTTCCGGGHHHHHHHHHHH-HTTTCCEEEEECCHHH
T ss_pred CCCEEEEEecCcccCCCCCCccCccH-HHHHHHhC--CeEEEeecCCCCHHHHHHHHHHHHhc-cCCCCCEEEEEEeccc
Confidence 457899999999986653 2468 88988885 78999999999998888877665421 1257999999999999
Q ss_pred CCCCCCCCCC-------------------------CCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcC-
Q 025181 81 SMGPHPSGLG-------------------------PHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQG- 134 (256)
Q Consensus 81 ~~~~~~~~~~-------------------------~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~- 134 (256)
+......+.. ...+.+.|.++++++++.+++.+|+++|+++++++.........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~ 180 (274)
T 3bzw_A 101 YNSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKN 180 (274)
T ss_dssp HHTTCCCCCSEEEEEEEEEEEESSCCEEEEEEEEEECCCSSSHHHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTE
T ss_pred CcccCCCccccccchhhhhcccchhhcccccccccccCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccccccccccccc
Confidence 8764221100 03356789999999999999999999999999987643211000
Q ss_pred CccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhh-ccc--cccccc---ccccccCChhHHHHHHHHHHHHHH
Q 025181 135 TSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQ-KRD--DWKNAC---FTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~-~~~--~~~~~~---~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
..+........+..+.+||++++++|+++++.|||++..+. +.. .....+ ..||+|||++||+.||+.|...|.
T Consensus 181 ~~p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~iA~~i~~~ll 260 (274)
T 3bzw_A 181 VQPDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDRLHPDTKGQERMARTLMYQLL 260 (274)
T ss_dssp EECCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHTCCCTTSGGGGGGEEETTTEEEEECHHHHHHHHHHHHHHGG
T ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhhccCccccccccccccCCCCCcCCCHHHHHHHHHHHHHHHh
Confidence 00000000012344689999999999999999999999885 221 122223 479999999999999999988776
Q ss_pred hc
Q 025181 209 QA 210 (256)
Q Consensus 209 ~~ 210 (256)
+.
T Consensus 261 ~~ 262 (274)
T 3bzw_A 261 AL 262 (274)
T ss_dssp GS
T ss_pred cc
Confidence 53
No 17
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=99.95 E-value=5.9e-28 Score=193.19 Aligned_cols=186 Identities=18% Similarity=0.227 Sum_probs=137.8
Q ss_pred eEEEEccccccccc---CCCChHHHHHHHhhccccEeecCCCCCchHHHHH--HhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 8 QFVLFGSSIVQLSF---SNGGWGAILSDIYARKADILLRGYYGWNSRRALQ--VLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 8 ~i~~iGDS~t~g~~---~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~--~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
+|+++|||+|++.. ...+|...|++.++ +.+.|.|++|.++..+.. ++++.+.. ...+|+|+|++|+||..
T Consensus 2 ~I~~~GDS~t~g~~~~~~~~gw~~~l~~~l~--~~v~N~gi~G~tt~~~~~~~r~~~~l~~--~~~~d~ViI~~G~ND~~ 77 (233)
T 1k7c_A 2 TVYLAGDSTMAKNGGGSGTNGWGEYLASYLS--ATVVNDAVAGRSARSYTREGRFENIADV--VTAGDYVIVEFGHNDGG 77 (233)
T ss_dssp EEEEECCTTTSTTTTSTTCCCGGGGSGGGBS--SEEEECCCTTCCHHHHHHTTHHHHHHHH--CCTTCEEEECCCTTSCS
T ss_pred EEEEEecCCCcCCCCCCCCCCHHHHHHHhCC--ceEEecccCCccHHHHHHcccHHHHHhh--CCCCCEEEEEccCCCCC
Confidence 79999999999654 34679999998886 789999999999998774 56665431 12359999999999987
Q ss_pred CCCCCC---CC--------------CCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhh
Q 025181 83 GPHPSG---LG--------------PHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRT 145 (256)
Q Consensus 83 ~~~~~~---~~--------------~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~ 145 (256)
....+. .. ...+.++|.++|+++++.+++. ++++|+++++|..... .. ..
T Consensus 78 ~~~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--g~~vil~tp~p~~~~~--~~---------~~ 144 (233)
T 1k7c_A 78 SLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAK--GAKVILSSQTPNNPWE--TG---------TF 144 (233)
T ss_dssp CGGGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHT--TCEEEEECCCCCCTTT--TS---------SC
T ss_pred CcCCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHC--CCEEEEECCCCccccC--CC---------cc
Confidence 532110 00 0123579999999999999884 5789999988763211 00 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEechhHhhcc----cc-ccccc-ccccccCChhHHHHHHHHHHHHHHhc
Q 025181 146 NELCQKYSDACINLCHELGVKVVDLFTAIQKR----DD-WKNAC-FTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 146 ~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~----~~-~~~~~-~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+.....|+++++++|++++++|||++..+.+. +. ....+ ..||+|||++||++||+.|++.|++.
T Consensus 145 ~~~~~~y~~~~~~vA~~~~v~~iD~~~~~~~~~~~~g~~~~~~~~~~DgiHpn~~G~~~iA~~i~~~l~~~ 215 (233)
T 1k7c_A 145 VNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGAEVVAEAFLKAVVCT 215 (233)
T ss_dssp CCCCCHHHHHHHHHHHHHTCEEECHHHHHHHHHHHHCHHHHHHTCSSSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHhChhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 12246889999999999999999999886542 10 01123 37999999999999999999999975
No 18
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=99.94 E-value=7.7e-26 Score=192.25 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=140.1
Q ss_pred CCceEEEEcccccccccC---CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 5 ARPQFVLFGSSIVQLSFS---NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
.+++|+++|||+|+|.+. ..+|+..+++.++ +++.|.|++|.++.. ...+.+.+. ..+||+|+|++|+||.
T Consensus 184 ~~~~Iv~~GDSiT~G~g~~~~~~~w~~~la~~l~--~~viN~GisG~~~~~-~~~~~~~l~---~~~pdlVvI~lGtND~ 257 (385)
T 3skv_A 184 SKPHWIHYGDSICHGRGAASPSRTWLALAARAEG--LDLQSLSFAADGSHL-QPMFARLIR---DLPADLISLRVGTSNF 257 (385)
T ss_dssp CCCEEEEEECSSCTTTTCSSGGGSHHHHHHHHHT--CEEEEECCTGGGGSC-CHHHHHHHH---HSCCSEEEEEESHHHH
T ss_pred CCceEEEEeccccCCCCCCCCCCCHHHHHHHhcC--CcEEEeecCCCcccH-HHHHHHHHh---ccCCCEEEEEeeccCC
Confidence 478899999999997653 2579999999885 789999999933110 112222221 2479999999999998
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 025181 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~ 161 (256)
.. ..+.+.|.+++.++++.+++.+|+++|+++++++.......+... .....+..+.++++++++++
T Consensus 258 ~~--------~~~~~~~~~~l~~li~~ir~~~P~a~Illv~p~~~P~~~~~p~~~-----~~~l~~~~~~l~~~~~~lA~ 324 (385)
T 3skv_A 258 MD--------GDGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADD-----KPTVADYREQVVKVAELLRK 324 (385)
T ss_dssp TT--------TCCTTTHHHHHHHHHHHHHTTCSSSCEEEEECCCCTTTTTSCCTT-----SCCHHHHHHHHHHHHHHHHH
T ss_pred CC--------CCCHHHHHHHHHHHHHHHHHHCCCCcEEEEcCCCCcccccCCccc-----hhhHHHHHHHHHHHHHHHHh
Confidence 54 256799999999999999999999999999988541111111000 00223445677778888887
Q ss_pred H--hCCeEEechhHhhcccc---cccccccccccCChhHHHHHHHHHHHHHHhcccCCC
Q 025181 162 E--LGVKVVDLFTAIQKRDD---WKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPS 215 (256)
Q Consensus 162 ~--~~v~~vD~~~~~~~~~~---~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~~~~~ 215 (256)
+ .++.|||....+..... ....+..||+|||++||++||+.+++.|++.+|.|.
T Consensus 325 ~g~~~v~~vd~~~l~~~~~~~~~~~~l~~~DGlHPn~~Gy~~mA~~l~~~L~~~g~~p~ 383 (385)
T 3skv_A 325 HGDQNVHYLDGMRVWGPERGMELYLEKPDKYPTHPNAVGHEIFAESSRREMAALGVLPV 383 (385)
T ss_dssp TTCTTEEEECHHHHSCTTCCGGGBCSCTTSCCCSBCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCEEEEecHHHcCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCccC
Confidence 6 79999999876654321 112356899999999999999999999999887653
No 19
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=99.93 E-value=1.7e-26 Score=182.40 Aligned_cols=172 Identities=17% Similarity=0.237 Sum_probs=131.3
Q ss_pred CCCceEEEEcccccccccC--CCChHHHHHHHhhc---cccEe--------------ecCCCCCchHHHHHHhhhhCCCC
Q 025181 4 PARPQFVLFGSSIVQLSFS--NGGWGAILSDIYAR---KADIL--------------LRGYYGWNSRRALQVLDQVFPKD 64 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~--~~~~~~~l~~~~~~---~~~v~--------------n~g~~G~~s~~~~~~~~~~~~~~ 64 (256)
+...+|+++|||+|+|... ..+|+..|++.+.. .+.+. |.|++|.++..+..+++..+.
T Consensus 3 ~~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~-- 80 (215)
T 2vpt_A 3 SKTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLN-- 80 (215)
T ss_dssp -CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHH--
T ss_pred CCceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhh--
Confidence 3567999999999986553 35899999988763 23444 889999999999998887652
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhh
Q 025181 65 APIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVR 144 (256)
Q Consensus 65 ~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~ 144 (256)
..+||+|+|++|+||..... +...++++++++.+++..|+++|++++++|... .
T Consensus 81 -~~~pd~vvi~~G~ND~~~~~----------~~~~~~l~~li~~i~~~~p~~~ii~~~~~p~~~---------------~ 134 (215)
T 2vpt_A 81 -THNPDVVFLWIGGNDLLLNG----------NLNATGLSNLIDQIFTVKPNVTLFVADYYPWPE---------------A 134 (215)
T ss_dssp -HHCCSEEEEECCHHHHHHHC----------CCCHHHHHHHHHHHHHHCTTCEEEEECCCSCSG---------------G
T ss_pred -ccCCCEEEEEccccccCCCC----------ChhHHHHHHHHHHHHHhCCCCEEEEEeCCCChH---------------H
Confidence 35899999999999985321 112578999999999999999999999888631 1
Q ss_pred hHHHHHHHHHHHHHHHH-----HhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 145 TNELCQKYSDACINLCH-----ELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 145 ~~~~~~~~n~~l~~~~~-----~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
...||+.+.++++ +.++.|||++..+.+.. ..+..||+|||++||++||+.+++.|++.
T Consensus 135 ----~~~~n~~l~~~~~~~~~~~~~v~~iD~~~~~~~~~---~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~ 198 (215)
T 2vpt_A 135 ----IKQYNAVIPGIVQQKANAGKKVYFVKLSEIQFDRN---TDISWDGLHLSEIGYKKIANIWYKYTIDI 198 (215)
T ss_dssp ----GHHHHTTHHHHHHHHHHTTCCEEEECGGGSCCCHH---HHBCTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcc---ccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 1233444444433 56899999999876543 23468999999999999999999999863
No 20
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=99.93 E-value=1.9e-25 Score=190.15 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=140.6
Q ss_pred CceEEEEccccccc-cc----CCCChHHHHHHHhhcc-ccEeecCCCCCchHHHHH--HhhhhCCCCCCCCC-cEEEEEe
Q 025181 6 RPQFVLFGSSIVQL-SF----SNGGWGAILSDIYARK-ADILLRGYYGWNSRRALQ--VLDQVFPKDAPIQP-SLVIVYV 76 (256)
Q Consensus 6 ~~~i~~iGDS~t~g-~~----~~~~~~~~l~~~~~~~-~~v~n~g~~G~~s~~~~~--~~~~~~~~~~~~~p-d~vii~~ 76 (256)
+.+|+++|||+|+| .. ...+|+..|++.++.. +.+.|.|++|.++..+.. +++..+. ..+| |+|+|++
T Consensus 162 ~~~Iv~lGDSiT~G~~g~~~~~~~~w~~~L~~~L~~~~~~v~N~GisG~tt~~~l~~~rl~~~l~---~~~p~d~VvI~~ 238 (375)
T 2o14_A 162 NRTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEAILK---YIKPGDYFMLQL 238 (375)
T ss_dssp CCEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHHSSHHHHHHT---TCCTTCEEEEEC
T ss_pred CcEEEEecCccccCCcCCCCCCCCCHHHHHHHHhccCCceEEEeccCCCcHhhhhhcccHHHHHH---hCCCCCEEEEEE
Confidence 45999999999997 32 2357999999888743 569999999999988874 6666553 3568 9999999
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHH
Q 025181 77 GGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDAC 156 (256)
Q Consensus 77 G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l 156 (256)
|+||.... ...+.++|.++++++++.+++. +++||++++++.... +... ...+.....||+++
T Consensus 239 G~ND~~~~------~~~~~~~~~~~l~~ii~~lr~~--~a~vilvtP~~~~~~-~~~~--------~~~~~~~~~~~~~i 301 (375)
T 2o14_A 239 GINDTNPK------HKESEAEFKEVMRDMIRQVKAK--GADVILSTPQGRATD-FTSE--------GIHSSVNRWYRASI 301 (375)
T ss_dssp CTGGGCGG------GCCCHHHHHHHHHHHHHHHHTT--TCEEEEECCCCCTTC-BCTT--------SCBCCTTSTTHHHH
T ss_pred EccCCCcc------CCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCcccc-cCcc--------cchhHHHHHHHHHH
Confidence 99998642 1236799999999999999986 588999986653210 1000 01223456789999
Q ss_pred HHHHHHhCCeEEechhHhhcc----c--cccccc-ccccccCChhHHHHHHHHHHHHHHhc
Q 025181 157 INLCHELGVKVVDLFTAIQKR----D--DWKNAC-FTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 157 ~~~~~~~~v~~vD~~~~~~~~----~--~~~~~~-~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+++|++++++|||++..+.+. + .....+ ..||+|||++||++||+.|++.|++.
T Consensus 302 ~~lA~~~~v~~iDl~~~~~~~~~~~g~~~~~~~~~~~DgvHpn~~G~~~~A~~i~~~L~~~ 362 (375)
T 2o14_A 302 LALAEEEKTYLIDLNVLSSAYFTSIGPERTLGLYMDGDTLHPNRAGADALARLAVQELKRQ 362 (375)
T ss_dssp HHHHHHTTCEEECHHHHHHHHHHHHCHHHHHTTBCTTCSSSBBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEehHHHHHHHHHhcCcccchhhhcCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987541 1 011223 36999999999999999999999986
No 21
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=99.93 E-value=4.1e-25 Score=183.64 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=144.8
Q ss_pred ceEEEEcccccccccC----------------CCChHHHHHHHhhcc----ccEeecCCCCCchHHHHHHhh--------
Q 025181 7 PQFVLFGSSIVQLSFS----------------NGGWGAILSDIYARK----ADILLRGYYGWNSRRALQVLD-------- 58 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~----------------~~~~~~~l~~~~~~~----~~v~n~g~~G~~s~~~~~~~~-------- 58 (256)
.+|++||||+|+|.+. ..+|+..+++.++.. +.+.|.+++|.++.++.....
T Consensus 6 ~~~valGDS~taG~g~~~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~~~~n~a~sG~tt~~~~~~~~~~~~~~~~ 85 (306)
T 1esc_A 6 VPTVFFGDSYTANFGIAPVTNQDSERGWCFQAKENYPAVATRSLADKGITLDVQADVSCGGALIHHFWEKQELPFGAGEL 85 (306)
T ss_dssp EEEEECCSHHHHTTTCSSBTTTTSGGGGGTCBTTCHHHHHHHHHHTTTCEEEEEEECCCTTCCGGGGTSCEECGGGCCEE
T ss_pred ceEEEECchhhhCCCCCCCCCCcCCCCCCcCCccCHHHHHHHHhccccCCcceEEEeeccCccccccccccccccccccc
Confidence 5799999999986542 147999999999743 788999999999987654311
Q ss_pred -hhCCCCCCCCCcEEEEEeccCCCCCC-------CC-C--C---CCC-----------------------CCChhHHHHH
Q 025181 59 -QVFPKDAPIQPSLVIVYVGGNDSMGP-------HP-S--G---LGP-----------------------HVPLPEYVEN 101 (256)
Q Consensus 59 -~~~~~~~~~~pd~vii~~G~ND~~~~-------~~-~--~---~~~-----------------------~~~~~~~~~~ 101 (256)
.++.. ...++|+|+|++|+||+... .. . + ..+ ....+.+..+
T Consensus 86 ~~ql~~-l~~~~dlV~i~iGgND~~~~~~~~~c~~~~~~~~~~~~~p~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 164 (306)
T 1esc_A 86 PPQQDA-LKQDTQLTVGSLGGNTLGFNRILKQCSDELRKPSLLPGDPVDGDEPAAKCGEFFGTGDGKQWLDDQFERVGAE 164 (306)
T ss_dssp CCGGGG-CCTTCCEEEECCCHHHHTHHHHHHHTCTTTTSSCSSCCCCSSTTSCGGGHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHh-ccCCCCEEEEEecCCcccHHHHHHHHhccccccccccCCcccccccCCcchhhhhcccchHHHHHHHHHHHHH
Confidence 12221 24579999999999998311 00 0 0 000 0012348899
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCCCChhhh---hcC-----Cccc-hhh---hhhhHHHHHHHHHHHHHHHHHhCCeEEe
Q 025181 102 MRRIATHLKSLSCATRIIFLSTPPVDEARI---NQG-----TSEI-FSE---LVRTNELCQKYSDACINLCHELGVKVVD 169 (256)
Q Consensus 102 l~~li~~i~~~~~~~~vi~~~~~p~~~~~~---~~~-----~~~~-~~~---~~~~~~~~~~~n~~l~~~~~~~~v~~vD 169 (256)
|+++++.+++++|+++|+++++|++..... ... .... ..+ ..+.+..++.+|+.++++|+++++.|||
T Consensus 165 l~~il~~ir~~~p~a~I~lvgyp~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~A~~~g~~~vD 244 (306)
T 1esc_A 165 LEELLDRIGYFAPDAKRVLVGYPRLVPEDTTKCLTAAPGQTQLPFADIPQDALPVLDQIQKRLNDAMKKAAADGGADFVD 244 (306)
T ss_dssp HHHHHHHHHHHSTTCEEEEECCCCCSCSCGGGGGSCCTTCSSCTTTTCCTTTHHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEeCChhccCCCCCCCcCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 999999999999999999999887643211 000 0000 011 4456788999999999999999999999
Q ss_pred chhHhhccc------cccccc------------ccccccCChhHHHHHHHHHHHHHHhc
Q 025181 170 LFTAIQKRD------DWKNAC------------FTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 170 ~~~~~~~~~------~~~~~~------------~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
++..|..+. .|...+ ..|++|||++||+.||+.|++.|++.
T Consensus 245 ~~~~f~~~~~c~~~~~w~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~iA~~v~~~l~~~ 303 (306)
T 1esc_A 245 LYAGTGANTACDGADRGIGGLLEDSQLELLGTKIPWYAHPNDKGRDIQAKQVADKIEEI 303 (306)
T ss_dssp TGGGCTTSSTTSTTSCSBCCSSSEEEEESSSCEEECSSCBCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCchhhhhcccccccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999876543 343322 26999999999999999999999864
No 22
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=99.90 E-value=1.5e-23 Score=176.62 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=121.4
Q ss_pred CCceEEEEcccccccccCC----------------CChHHHHHHHhhccccE---------eecCCCCCchHHHHHHhhh
Q 025181 5 ARPQFVLFGSSIVQLSFSN----------------GGWGAILSDIYARKADI---------LLRGYYGWNSRRALQVLDQ 59 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~----------------~~~~~~l~~~~~~~~~v---------~n~g~~G~~s~~~~~~~~~ 59 (256)
..++|+++|||+|+|.+.. .+|+..+++.++..+.. .|.|.+|.+ ....++++
T Consensus 121 ~~~~I~~iGDSiT~G~g~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~~~sG~~~~~n~g~~g~~--~~~~~~~~ 198 (341)
T 2wao_A 121 LERKIEFIGDSITCAYGNEGTSKEQSFTPKNENSYMSYAAITARNLNASANMIAWSGIGLTMNYGGAPGP--LIMDRYPY 198 (341)
T ss_dssp CSEEEEEEESHHHHTTTTTCCCTTSCCCGGGCCGGGSHHHHHHHHTTEEEEEEECTTCCSSCCGGGCCCC--CHHHHTTE
T ss_pred CCceEEEEccccccCCCccCCCcCCCCCcccccchhhhHHHHHHHhCCceeEEeeccceEEecCCCCCCC--ChhHHhhh
Confidence 5678999999999975422 37999999999754333 122333322 23333333
Q ss_pred hCC------CCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhc
Q 025181 60 VFP------KDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQ 133 (256)
Q Consensus 60 ~~~------~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~ 133 (256)
... .....+||+|+|++|+||+.... ...++|.+++.++++.+++.+|+++|+++++|+......
T Consensus 199 ~~~~~~~~~d~~~~~PdlVvI~lGtND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~~~~~-- 269 (341)
T 2wao_A 199 TLPYSGVRWDFSKYVPQVVVINLGTNDFSTSF-------ADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTGL-- 269 (341)
T ss_dssp EETTTTEECCGGGCCCSEEEEECCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEECSSCCHHHH--
T ss_pred ccCCCcccccccCCCCCEEEEeCccccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcCCchh--
Confidence 221 01146899999999999986532 235899999999999999999999999998766543111
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHH--HHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 134 GTSEIFSELVRTNELCQKYSDACINLC--HELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~n~~l~~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
...+ +.++++.++++ .+.++.|||++..+. ..++.||+|||++||+.||+.|++.|++.
T Consensus 270 ---------~~~~---~~i~~~~~~~~~a~~~~v~~vD~~~~~~------~~~~~DglHPn~~G~~~mA~~l~~~l~~~ 330 (341)
T 2wao_A 270 ---------DLCR---SYVTEVVNDCNRSGDLKVYFVEFPQQDG------STGYGEDWHPSIATHQLMAERLTAEIKNK 330 (341)
T ss_dssp ---------HHHH---HHHHHHHHHHHHTTCCSEEEEECCCCCS------TTCCCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------hHHH---HHHHHHHHHHHhcCCCcEEEEEcccccC------ccCcCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 0112 23344444443 356899999976442 12347999999999999999999999874
No 23
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=99.89 E-value=2.2e-22 Score=169.80 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=118.0
Q ss_pred CCceEEEEcccccccccCC---------------CChHHHHHHHhhccccEee-------cCCCCCch-HHHHHHhhhhC
Q 025181 5 ARPQFVLFGSSIVQLSFSN---------------GGWGAILSDIYARKADILL-------RGYYGWNS-RRALQVLDQVF 61 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~---------------~~~~~~l~~~~~~~~~v~n-------~g~~G~~s-~~~~~~~~~~~ 61 (256)
..++|+++|||||+|.+.. .+|+..+++.++..+.... .+++|.+. ......+.+..
T Consensus 131 ~~~~I~~iGDSIT~G~g~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~~~sG~gv~~~~~g~~~~~~~~~~~~r~~ 210 (347)
T 2waa_A 131 PQRKILVLGDSVTCGEAIDRVAGEDKNTRWWNARESYGMLTAKALDAQVQLVCWGGRGLIRSWNGKTDDANLPDFYQFTL 210 (347)
T ss_dssp CSEEEEEEESTTTTTTTTTCCTTSCCCGGGCCSTTSHHHHHHHHTTEEEEEEECTTCCSSCCTTSCSSSCCHHHHTTBSS
T ss_pred CCceEEEeeccccccCCCCCCCCCCCCccccchhhhhHHHHHHHhCCchheEeecCceEEeccCCCCCCCCHHHHHHhhc
Confidence 5678999999999975521 3899999999975433222 12233211 12233333332
Q ss_pred C--------CCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhc
Q 025181 62 P--------KDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQ 133 (256)
Q Consensus 62 ~--------~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~ 133 (256)
. .....+||+|+|++|+||+.... ...++|.++++++++.+++.+|+++|+++++|......
T Consensus 211 ~~~~~~~~~d~~~~~Pd~VvI~lG~ND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~~~I~l~~~p~~~~~~--- 280 (347)
T 2waa_A 211 GDTGQAPQWDHHRYQPDLIISAIGTNDFSPGI-------PDRATYINTYTRFVRTLLDNHPQATIVLTEGAILNGDK--- 280 (347)
T ss_dssp CCSTTCCBCCGGGCCCSEEEECCCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSSCCHHH---
T ss_pred cccCCCccCccccCCCCEEEEEccccCCCCCC-------CcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCccCCch---
Confidence 1 01135899999999999996532 23579999999999999999999999999865432210
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHHHh---CCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 134 GTSEIFSELVRTNELCQKYSDACINLCHEL---GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~---~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
...+++.++++++++ ++.|+|+..... . .||+|||++||++||+.+++.|++.
T Consensus 281 ---------------~~~~~~~i~~~~~~~~~~~v~~id~~~~~~------~---~DglHPn~~G~~~~A~~l~~~l~~~ 336 (347)
T 2waa_A 281 ---------------KAALVSYIGETRQQLHSNRVFYASSSHHPG------D---NSDAHPTKDQHAAMARELTPQLRQI 336 (347)
T ss_dssp ---------------HHHHHHHHHHHHHHHCCTTEEECCCCCCCC------B---TTBSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hhHHHHHHHHHHHHhCCCCEEEEEccCcCC------C---CCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 134455555555544 688999865321 1 1999999999999999999999874
No 24
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=99.86 E-value=3.6e-21 Score=163.51 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=115.3
Q ss_pred CCceEEEEcccccccccC------------------CCChHHHHHHHhhccccEeecCCCCCc---------hH-HHHHH
Q 025181 5 ARPQFVLFGSSIVQLSFS------------------NGGWGAILSDIYARKADILLRGYYGWN---------SR-RALQV 56 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~------------------~~~~~~~l~~~~~~~~~v~n~g~~G~~---------s~-~~~~~ 56 (256)
..++|+++|||+|+|.+. ..+|+..+++.++..+.+ .+++|.+ +. .....
T Consensus 141 ~~~~I~~iGDSIT~G~g~~~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~--~~~sG~~v~~~~gg~~~g~~~~~~ 218 (366)
T 2w9x_A 141 RKRQIEFIGDSFTVGYGNTSPSRECTDEELFKTTNSQMAFGPLTAKAFDADYQI--NASSGFGIVRNYNGTSPDKSLLSL 218 (366)
T ss_dssp CCCEEEEEESHHHHTTTTTCSCSCCCHHHHHHHCCGGGSHHHHHHHHHTCEEEE--EECTTCCSSCCGGGCSTTCCHHHH
T ss_pred CCceEEEEeccccccCcccCCCCCCCcccccceecccccHHHHHHHHhCCceeE--EeecCceEEeCCCCCCCCCCHHHH
Confidence 457899999999997553 357999999999754433 2233221 10 12222
Q ss_pred hhhhC------CCCCCCCCcEEEEEeccCCCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 025181 57 LDQVF------PKDAPIQPSLVIVYVGGNDSMGPHPSGLGPH---VPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVD 127 (256)
Q Consensus 57 ~~~~~------~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~---~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~ 127 (256)
+++.. ......+||+|+|++|+||+......+.... ...++|.+++.++++.+|+.+|+++|+++++|...
T Consensus 219 ~~r~~~~~~~~~~~~~~~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~ 298 (366)
T 2w9x_A 219 YPYTLNNPDQLYHNKHWKPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILMNSDQSN 298 (366)
T ss_dssp TTBSSSSTTCBCCCTTCCCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEESCGG
T ss_pred HHHhcCCCccccccccCCCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcC
Confidence 22221 1112358999999999999865322100000 01478999999999999999999999999865431
Q ss_pred hhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 128 EARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
. ...+.++++.+.+++ +.+.++.|+|+. . ...+.|++|||++||+.||+.+++.|
T Consensus 299 ~---------------~~~~~i~~~~~~~~~-~~~~~v~~vd~~----~-----~~~~~dd~HPn~~G~~~mA~~l~~~I 353 (366)
T 2w9x_A 299 G---------------EIAEQVGKVVAQLKG-GGLHQVEQIVFK----G-----LDYSGCHWHPSANDDQLLANLLITHL 353 (366)
T ss_dssp G---------------HHHHHHHHHHHHHHH-TTCCCEEEEEEC----C-----CCCCBGGGBCCHHHHHHHHHHHHHHH
T ss_pred c---------------hHHHHHHHHHHHHHh-cCCCcEEEEEcc----C-----CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 1 112222232222222 334579999975 1 12346779999999999999999999
Q ss_pred Hhc
Q 025181 208 KQA 210 (256)
Q Consensus 208 ~~~ 210 (256)
++.
T Consensus 354 ~~~ 356 (366)
T 2w9x_A 354 QQK 356 (366)
T ss_dssp HTB
T ss_pred HHh
Confidence 974
No 25
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=99.53 E-value=3.4e-13 Score=122.23 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CCCceEEEEcccccccccC-----------------------------CCChHHHHHHHhhcc---c-------------
Q 025181 4 PARPQFVLFGSSIVQLSFS-----------------------------NGGWGAILSDIYARK---A------------- 38 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~-----------------------------~~~~~~~l~~~~~~~---~------------- 38 (256)
++.++|++||||++..|.. .+-|.+.|++.++-. +
T Consensus 13 ~~~~~i~~FGDS~sDtGn~~~~~~~~~~~~~~~~~~g~~~~~Gr~s~~G~~~~D~ia~~lgl~~~~l~p~~~~~~~~~~~ 92 (632)
T 3kvn_X 13 SPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLGIAPGDLAASTSPVNAQQGI 92 (632)
T ss_dssp CCCSCEEEECSTTTCCSCSBCTTSSTTCBCCSSCBCSSSCCTTSSCCBCCCHHHHHHHHTTCCGGGGSBSSCHHHHHHTC
T ss_pred CCCccEEEEccccccCCCcccccCCcCCccccccCCCCccccCcccccCCchHHHHHHHcCCCccccCcccccccccccc
Confidence 3677899999999874321 112678899888632 1
Q ss_pred -cEeecCCCCCchHHHHHH--------------hhhhC---------CCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCC
Q 025181 39 -DILLRGYYGWNSRRALQV--------------LDQVF---------PKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVP 94 (256)
Q Consensus 39 -~v~n~g~~G~~s~~~~~~--------------~~~~~---------~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~ 94 (256)
.-+|.+.+|.++...+.. +..++ .........+++|++|+||+...... ....
T Consensus 93 ~~G~NfA~gGa~~~~~l~~~~~~~~~~~~l~~ql~~~~~~~l~~~~~~~~~~~~~sL~~v~iG~ND~~~~~~~---~~~~ 169 (632)
T 3kvn_X 93 ADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSRDGYLVDRARQGLGADPNALYYITGGGNDFLQGRIL---NDVQ 169 (632)
T ss_dssp CCCSBCCCTTCCHHHHHHHHHSTTCEEEEETTEEEEEECCHHHHHHTTTCCCCTTSEEEECCSHHHHHTTCCC---SHHH
T ss_pred ccCceEeeccccccccccccccccccccccchhHHHHHHHHHHHHhhccCccCCCCEEEEEEechhhhccccc---ChHH
Confidence 125999999986442221 00111 00012355999999999998542110 1112
Q ss_pred hhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhC--CeEEechh
Q 025181 95 LPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG--VKVVDLFT 172 (256)
Q Consensus 95 ~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~--v~~vD~~~ 172 (256)
.+.+..++.+.++.+.+. ...+|+|++.||+.-.+... ...|.+..+.....||+.|++.+.+.+ +.|+|.+.
T Consensus 170 ~~~~v~~~~~~v~~L~~~-Gar~~~v~~~pp~gc~P~~~----~~~c~~~~n~~~~~~N~~L~~~l~~l~~~i~~~D~y~ 244 (632)
T 3kvn_X 170 AQQAAGRLVDSVQALQQA-GARYIVVWLLPDLGLTPATF----GGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPL 244 (632)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCEEEECCCCGGGSTTTT----TSTTHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCCccccc----CCCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEcHH
Confidence 456677777888877775 56789999999975544421 235777889999999999999998875 88999998
Q ss_pred Hhhc----cc---------------------------------ccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 173 AIQK----RD---------------------------------DWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 173 ~~~~----~~---------------------------------~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
.+.+ +. +-..+++.|++|||+++|++||+.++..|.
T Consensus 245 ~~~~~~~np~~yGf~~~~~~~~cCg~g~~C~~~~~~~~~~~C~~~~~y~fwD~~HpTe~~~~~ia~~~~~~~~ 317 (632)
T 3kvn_X 245 LLKEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYTYSLLS 317 (632)
T ss_dssp HHHHHHHCGGGGTCCTTSCTTTCBSSCTTSCBCTTTSTTSSSCCGGGCSBSSSSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHhcCCCcCCCCccccCCCCccCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHHHhccC
Confidence 7432 00 112345689999999999999999998775
No 26
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=99.25 E-value=1.3e-10 Score=93.78 Aligned_cols=190 Identities=15% Similarity=0.075 Sum_probs=126.9
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhh-----C----CCC-----------
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQV-----F----PKD----------- 64 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~-----~----~~~----------- 64 (256)
...||++||.|+|. ...+. ....|++..+..+.+.+..++|++........... + ...
T Consensus 9 ~~~rVL~IGNS~t~-n~~p~-~l~~la~a~g~~~~v~~~~igG~~L~~H~~~~~~~~~~~~y~k~~~~g~~~~~~~~~~~ 86 (271)
T 4i8i_A 9 DTIKVLAIGNSFSQ-DAVEQ-YLHELGEAEGITMIIGNMFIGGCSLERHVQNIRNNAPAYAYRKVEKDGEKTETRSMTIE 86 (271)
T ss_dssp CEEEEEEEESHHHH-HHHSS-SHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHTTCCCEEEEEECTTSCEEEEEEECHH
T ss_pred CCeEEEEECCCCCc-CcHHH-HHHHHHHhcCCceEEEEEecCCccHHHHHhccccccccccccccccCCccccccchhHH
Confidence 46899999999994 32222 33334443455667778899999987766554321 0 000
Q ss_pred ---CCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-CCceEEEEcCCCCChhhhhcCCccchh
Q 025181 65 ---APIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-CATRIIFLSTPPVDEARINQGTSEIFS 140 (256)
Q Consensus 65 ---~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-~~~~vi~~~~~p~~~~~~~~~~~~~~~ 140 (256)
...++|+||+.=+..-.. ..+.|...+.++++.+|+.+ |++++++..+-+.......... ..
T Consensus 87 ~~L~~~~wD~VilQe~S~~~~-----------~~~~~~~~~~~l~~~ir~~~~p~ak~il~~TWa~~~~~~~~~f---~~ 152 (271)
T 4i8i_A 87 KALADEKWDYISVQQASPLSG-----------IYDSYKASLPELVNYIRERIGKETVLMMHQTWAYATNANHTGF---KN 152 (271)
T ss_dssp HHHHHSCCSEEEECCCGGGTT-----------CHHHHHHHHHHHHHHHHTTSCTTCEEEEEECCCCCTTCCCGGG---GG
T ss_pred HHhhcCCCCEEEeCCCCCCCC-----------CHHHHHHHHHHHHHHHHhhcCCCCEEEEEeccCCCCCCCcccc---cc
Confidence 135789999987654321 26888999999999999999 9999999987665432210000 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCC-eEEechhHhhcc--cccccccccccccCCh-hHHHHHHHHHHHHHHhc
Q 025181 141 ELVRTNELCQKYSDACINLCHELGV-KVVDLFTAIQKR--DDWKNACFTDGIHLSE-EGSKIVVAEILKVLKQA 210 (256)
Q Consensus 141 ~~~~~~~~~~~~n~~l~~~~~~~~v-~~vD~~~~~~~~--~~~~~~~~~Dg~Hp~~-~G~~~ia~~l~~~l~~~ 210 (256)
......+..+.+.+..++++.++++ .++..-.++... ......++.||+|||+ .|+-+.|-.++..|.+.
T Consensus 153 ~~~~~~~m~~~l~~ay~~~a~~~~~~~viPvG~a~~~~~~~~p~~~l~~Dg~Hps~~~GsYLaA~v~y~~L~g~ 226 (271)
T 4i8i_A 153 YDQNQMKMYTSIVDAVKKAANLVGIKKIIPSGTAIQNARTSFIGDHMNRDGYHLDLTIGRYTAACTWFEALTHR 226 (271)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHHSTTCSCCBSSSSSBCTTHHHHHHHHHHHHHHHCC
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCCCEEeeHHHHHHHHHHhCcCccccCCCCCCCCccCHHHHHHHHHHHHhCC
Confidence 0011124455667777788888888 699998886542 1111234599999999 99999999999999863
No 27
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7
Probab=97.93 E-value=0.00012 Score=59.44 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=98.9
Q ss_pred HHHHHHh-hccccEeecCCCCCchHH----------HHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChh
Q 025181 28 AILSDIY-ARKADILLRGYYGWNSRR----------ALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLP 96 (256)
Q Consensus 28 ~~l~~~~-~~~~~v~n~g~~G~~s~~----------~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~ 96 (256)
..|.+.+ +..+-+++.+.+|...+. ...+....+ ......-|+..-|-+|.... ..+
T Consensus 62 ~~L~~~l~~vpVGlI~~a~GGT~Ie~W~~~~~ly~~~l~~~~~a~---~~~~ikGvlWyQGEsd~~~~---------~~~ 129 (290)
T 1zmb_A 62 DAWSQKNQEDIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAM---ESSELTGILWHQGESDSLNG---------NYK 129 (290)
T ss_dssp HHHHHSCSSSEEEEEECCCTTCCGGGGCTTSHHHHHHHHHHHHHH---TSSEEEEEEEECCGGGSSSS---------CST
T ss_pred HHHHHhCCCCCEEEEEccCCCeeHHHhCCCcccHHHHHHHHHHhc---cCCCeeEEEEEecCCCcCCC---------CHH
Confidence 3444444 334566788888876321 222222222 23456889999999998431 357
Q ss_pred HHHHHHHHHHHHHHhhc--CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH-hCCeEEechhH
Q 025181 97 EYVENMRRIATHLKSLS--CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE-LGVKVVDLFTA 173 (256)
Q Consensus 97 ~~~~~l~~li~~i~~~~--~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~-~~v~~vD~~~~ 173 (256)
.|.+.+..+++.+|+.. |+.+++++...+... .. +. ...+ .....++++.++++.+ .++.+|+..+.
T Consensus 130 ~Y~~~l~~lI~~wR~~~~~~~lPf~~vql~~~~~-~~-~~---~~~~-----~~~~~ireaQ~~~~~~~pn~~~v~t~dl 199 (290)
T 1zmb_A 130 VYYKKLLLIIEALRKELNVPDIPIIIGGLGDFLG-KE-RF---GKGC-----TEYNFINKELQKFAFEQDNCYFVTASGL 199 (290)
T ss_dssp THHHHHHHHHHHHHHHTTCSSSCEEEECCCTTTT-TS-GG---GTTC-----TTHHHHHHHHHHHHHHSTTEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcCC-CC-cc---cccc-----chHHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 89999999999999887 789999998887641 10 00 0000 0124455566666543 36777777431
Q ss_pred hhcccccccccccccccCChhHHHHHHHHHHHHHHhcc
Q 025181 174 IQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQAE 211 (256)
Q Consensus 174 ~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~ 211 (256)
. ...|++|||.+|++.++++++....+..
T Consensus 200 ~---------~~~d~iHp~~~~k~~vG~RlA~~al~~~ 228 (290)
T 1zmb_A 200 T---------CNPDGIHIDAISQRKFGLRYFEAFFNRK 228 (290)
T ss_dssp C---------BCTTSSSBCHHHHHHHHHHHHHHHHHTC
T ss_pred C---------CCCCCcCCCchHHHHHHHHHHHHHHHHh
Confidence 1 1258999999999999999999988753
No 28
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=97.36 E-value=0.0027 Score=53.70 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEechhHhhcc
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGV-KVVDLFTAIQKR 177 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v-~~vD~~~~~~~~ 177 (256)
...+.-+++.+++. ++.|+++.+|-- ..++.. .....+..+.+.+.++..|+++|+ .++|+..
T Consensus 275 y~Dlql~L~~~k~~--~~~vlfVi~PVN--gkWydy-------tGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~----- 338 (407)
T 3bma_A 275 YNDLQLVLTQFSKS--KVNPIFIIPPVN--KKWMDY-------AGLREDMYQQTVQKIRYQLESQGFTNIADFSK----- 338 (407)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECCCC--HHHHHH-------TTCCHHHHHHHHHHHHHHHHTTTCCCEEECTT-----
T ss_pred HHHHHHHHHHHHHc--CCceEEEEeCCc--hHHHHh-------cCCCHHHHHHHHHHHHHHHHHCCCcceeeccc-----
Confidence 56788999999995 488888866643 222211 113346678899999999999999 9999966
Q ss_pred cccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 178 DDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 178 ~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
..+..+++.|.+|++-.|=-.+-+.|.+.+.+.
T Consensus 339 ~~yepYfm~DtiHlGw~GWv~~Dk~I~~f~~~~ 371 (407)
T 3bma_A 339 DGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNP 371 (407)
T ss_dssp CTTSTTCBSSSSCBCTTHHHHHHHHHHHHHHSC
T ss_pred cCCCCceeeecccCchhHHHHHHHHHHHHHhCC
Confidence 345566789999999999999999999999976
No 29
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7
Probab=96.10 E-value=0.025 Score=45.09 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=86.9
Q ss_pred hHHHHHHHh---hccccEeecCCCCCchHH------H-HHHhhh---hCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCC
Q 025181 26 WGAILSDIY---ARKADILLRGYYGWNSRR------A-LQVLDQ---VFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPH 92 (256)
Q Consensus 26 ~~~~l~~~~---~~~~~v~n~g~~G~~s~~------~-~~~~~~---~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~ 92 (256)
+...|.+.+ +..+-+++.+.+|...+. + ...+.. .+. ......-|+..-|-+|... .
T Consensus 98 Fg~~L~~~l~~~~vpVglI~~A~GGt~i~~W~~~~~ly~~~i~~~~~al~--~~~~ikGvlWyQGEsn~~~--------~ 167 (260)
T 2apj_A 98 FANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRK--CGGEIKAVLWYQGESDVLD--------I 167 (260)
T ss_dssp HHHHHHHHHTCTTCCEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHHHGG--GSCEEEEEEEECCGGGSSS--------H
T ss_pred HHHHHHHhhccCCCeEEEEEeCCCCCcHHHHCCCcchHHHHHHHHHHhhc--cCCceEEEEEecCCCCCCC--------c
Confidence 345555544 334567788888876432 1 111221 111 0134577788889888732 1
Q ss_pred CChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH---HhCCeE
Q 025181 93 VPLPEYVENMRRIATHLKSLS--CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH---ELGVKV 167 (256)
Q Consensus 93 ~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~---~~~v~~ 167 (256)
.+.+.|.+.+..+|+.+|+.. ++..++++...+... . +..+++... -.++.+
T Consensus 168 ~~~~~Y~~~l~~lI~~wR~~~~~~~lPf~~vql~~~~~----------------~-------~~~iReaQ~~~~~pn~~~ 224 (260)
T 2apj_A 168 HDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGG----------------Y-------IDKVREAQLGLKLSNVVC 224 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCCEEEEECSCCCT----------------T-------HHHHHHHHHHCCCTTEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc----------------h-------HHHHHHHHHhccCCCeEE
Confidence 125789999999999999875 688999998877521 1 122222222 224555
Q ss_pred EechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 168 VDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 168 vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
|...+. . ...|++||+.+|++.++++++....+
T Consensus 225 v~t~dl----g-----~~~D~iHp~~k~~~~vG~RlA~~al~ 257 (260)
T 2apj_A 225 VDAKGL----P-----LKSDNLHLTTEAQVQLGLSLAQAYLS 257 (260)
T ss_dssp EECTTS----C-----BCTTSSSBCHHHHHHHHHHHHHHHHH
T ss_pred EEccCC----C-----CCCCCcCCCcHHHHHHHHHHHHHHHH
Confidence 554321 1 12588999999999999999887654
No 30
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=95.01 E-value=0.047 Score=45.99 Aligned_cols=189 Identities=11% Similarity=0.114 Sum_probs=102.4
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc---cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR---KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~---~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
+.-||.++|+|.++ .....|.-.+.. ..++...+++.+ ..++..--... ...+||+|++....-++
T Consensus 21 ~~~riavlg~~T~~------~l~~~l~~~~~~~g~~~~~~~~~y~~~-~~~ll~~~s~l----~~~~pd~v~~~~~~~~~ 89 (387)
T 3nvb_A 21 PKLKVALLGDTATQ------LLATAIKGEGILRNYNIELWEAEYNQV-ERQIMDPTSDY----YQFEPDYTIIFHSTHKL 89 (387)
T ss_dssp CEEEEEEEESSCCH------HHHHHHHHHHHHTTCEEEEEECCTTCH-HHHHHCTTSHH----HHHCCSEEEEECCHHHH
T ss_pred ceEEEEEeccchHH------HHHHHHHHHHHHCCCcceEEEcCcchH-HHHHhCCcchh----hhcCCCEEEEEecHHHh
Confidence 44589999999887 444445543321 233333332221 11111111111 13589999998876555
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 025181 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~ 161 (256)
.+... .......+...+.+..+.+.++++ ..+.||+.+.+....... ...... ........+.++|..+.+.+.
T Consensus 90 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~~~~p~~~~~-g~~~~~--~~~~~~~~~~~~N~~l~~~~~ 163 (387)
T 3nvb_A 90 -LEKHS-LVNSDLQNKLADDRLDFVRLLCEQ-GIGRVIYYNYPEIEDTIW-GSYATK--VQSSFTYQLTKLNYELMNISQ 163 (387)
T ss_dssp -HHHHH-TSCHHHHTTHHHHHHHHHHHHHHH-CCSEEEEECCCCCCCCSS-GGGGGG--CTTSHHHHHHHHHHHHHHHHH
T ss_pred -ccccc-CChHHHHHHHHHHHHHHHHHHHhc-cCceEEEeCCCCCCcccc-ccchhc--ccccHHHHHHHHHHHHHHHHh
Confidence 21100 000001122344556666666665 567888877654221111 000000 011223468899999999998
Q ss_pred Hh-CCeEEechhHhhcccc--ccccc--ccccccCChhHHHHHHHHHHHHHHhc
Q 025181 162 EL-GVKVVDLFTAIQKRDD--WKNAC--FTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 162 ~~-~v~~vD~~~~~~~~~~--~~~~~--~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
++ ++.++|+.......+. +.... +.-+.++++..-..+|..+...++..
T Consensus 164 ~~~~~~~~D~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 217 (387)
T 3nvb_A 164 AYPNFFICNLAGISAKYGRNFMFDSSVYVNTEIILSLDALPIISSRTIDIIAAI 217 (387)
T ss_dssp HCTTEEEECHHHHHHHHCHHHHCCHHHHHHHCCCSCTTTHHHHHHHHHHHHHHH
T ss_pred hCCCEEEeeHHHHHHHhCcccccCchHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 76 7999999887655331 21111 12356788888889999888888763
No 31
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157}
Probab=94.04 E-value=0.19 Score=40.95 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=70.0
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC----------CceEEEEcCCCCChhhhhcCCccc
Q 025181 69 PSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSC----------ATRIIFLSTPPVDEARINQGTSEI 138 (256)
Q Consensus 69 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~----------~~~vi~~~~~p~~~~~~~~~~~~~ 138 (256)
..-|+..-|-.|.... ..+.|.+.+..+|+.+|+... +..+|+........
T Consensus 183 IkGVLWyQGESN~~~~---------~~~~Y~~~f~~LI~~wR~d~~~~~~q~~~~~~lPFi~gqL~~f~~---------- 243 (337)
T 3pt5_A 183 FLGVCWMQGEFDLMTS---------DYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWK---------- 243 (337)
T ss_dssp EEEEEEECCTGGGGST---------TGGGHHHHHHHHHHHHHHHHGGGGGGCC---CCCEEEECCCHHHH----------
T ss_pred eEEEEEecCCccccCc---------CHHHHHHHHHHHHHHHHHHHcccccccccCCCCCEEEEECchhhh----------
Confidence 3566667788886321 136799999999999987653 78888887654211
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH--HHhCCeEEechhHhhccc----c--------------ccc--cc--ccccccCChh
Q 025181 139 FSELVRTNELCQKYSDACINLC--HELGVKVVDLFTAIQKRD----D--------------WKN--AC--FTDGIHLSEE 194 (256)
Q Consensus 139 ~~~~~~~~~~~~~~n~~l~~~~--~~~~v~~vD~~~~~~~~~----~--------------~~~--~~--~~Dg~Hp~~~ 194 (256)
...-.+|....-..+ .+.++.|+.+.+....-. . +.. .. ..|++|++..
T Consensus 244 -------~~~~~~y~~~~g~~~~~~~~~~~~~~~n~~~~~~p~~~p~~~~~~~~~~~~~a~~vss~~~t~~~d~~HF~a~ 316 (337)
T 3pt5_A 244 -------ENFPHAYEAIYGNYQNNILANIIFVDFQQQGARGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSSA 316 (337)
T ss_dssp -------HHCHHHHHHHTGGGTSCSSTTEEEECCSCTTCCCSBSSGGGSCCBGGGTBCCGGGCCTTTCSCSCGGGSBCHH
T ss_pred -------ccCccchhhhcccccccccccceeeehhHHHHhCcccCCCcCcccccccccceEEEcCCCCccCCCCcccChH
Confidence 111223333333333 233566777655432110 0 000 11 2589999999
Q ss_pred HHH-HHHHHHHHHHHh
Q 025181 195 GSK-IVVAEILKVLKQ 209 (256)
Q Consensus 195 G~~-~ia~~l~~~l~~ 209 (256)
+++ +++++.+.++.+
T Consensus 317 a~R~~~g~Rya~a~l~ 332 (337)
T 3pt5_A 317 ARRGIISDRFVEAILQ 332 (337)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 999 999888888765
No 32
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=77.65 E-value=6.2 Score=26.87 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=47.0
Q ss_pred CCCCCCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 1 MVGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 1 ~~~p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
|-.....+|+++.|+-.. ...+.+.+.. .+.+... .+.......+.+ ..||+|++-+...
T Consensus 1 M~~~~~~~iLivdd~~~~--------~~~l~~~l~~~g~~v~~~----~~~~~a~~~l~~-------~~~dlvi~d~~l~ 61 (140)
T 3grc_A 1 MSLAPRPRILICEDDPDI--------ARLLNLMLEKGGFDSDMV----HSAAQALEQVAR-------RPYAAMTVDLNLP 61 (140)
T ss_dssp ----CCSEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE----CSHHHHHHHHHH-------SCCSEEEECSCCS
T ss_pred CCCCCCCCEEEEcCCHHH--------HHHHHHHHHHCCCeEEEE----CCHHHHHHHHHh-------CCCCEEEEeCCCC
Confidence 444556799999998553 1223333332 2333221 122334444432 4689999976544
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 80 DSMGPHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 80 D~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
+. + -.++++.+++ ..+...||+++...
T Consensus 62 ~~--------------~-----g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 62 DQ--------------D-----GVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp SS--------------C-----HHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred CC--------------C-----HHHHHHHHHhCcccCCCCEEEEecCC
Confidence 42 1 1355666666 55889999988654
No 33
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=72.59 E-value=15 Score=24.43 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=46.0
Q ss_pred CCCC-CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 1 MVGP-ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 1 ~~~p-~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
|..+ ...+|+++.|+-.. ...+.+.+.. .+.+.. . .+.......+. ..+||+|++-+..
T Consensus 1 M~~~~~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~-------~~~~dlvi~d~~l 61 (130)
T 3eod_A 1 MTQPLVGKQILIVEDEQVF--------RSLLDSWFSSLGATTVL-A---ADGVDALELLG-------GFTPDLMICDIAM 61 (130)
T ss_dssp --CTTTTCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-E---SCHHHHHHHHT-------TCCCSEEEECCC-
T ss_pred CCCCCCCCeEEEEeCCHHH--------HHHHHHHHHhCCceEEE-e---CCHHHHHHHHh-------cCCCCEEEEecCC
Confidence 4444 56789999998553 1223333332 233322 1 12233333332 3568999997754
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 79 NDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 79 ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
.+. +-..+++.+++..+..+|++++...
T Consensus 62 ~~~-------------------~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 62 PRM-------------------NGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp -----------------------CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred CCC-------------------CHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 442 1135566667777888999987665
No 34
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=71.87 E-value=6.1 Score=28.99 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCCce--EEEEcccccccccC----CCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEe
Q 025181 4 PARPQ--FVLFGSSIVQLSFS----NGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYV 76 (256)
Q Consensus 4 p~~~~--i~~iGDS~t~g~~~----~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~ 76 (256)
|.+.+ |+.+||+.+.+... .+.=...|++.+.+ .+++...++-++....+...+..... ..+.|+|+...
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a---~~~~DlVittG 89 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS---IDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT---CTTCCEEEEES
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEecC
Confidence 44444 78889987753221 12233445555542 46788888888888777777765442 35689999998
Q ss_pred cc
Q 025181 77 GG 78 (256)
Q Consensus 77 G~ 78 (256)
|+
T Consensus 90 G~ 91 (178)
T 3iwt_A 90 GT 91 (178)
T ss_dssp CC
T ss_pred Cc
Confidence 86
No 35
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=71.55 E-value=21 Score=24.31 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 4 PARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
+...+|+++.|+-.. ...+...|.+ . .+.+.. . .+.......+.+ ..||+|++-+...+.
T Consensus 6 ~~~~~iLivd~~~~~----~~~l~~~L~~-~--g~~v~~-~---~~~~~a~~~l~~-------~~~dlii~d~~l~~~-- 65 (147)
T 2zay_A 6 GKWWRIMLVDTQLPA----LAASISALSQ-E--GFDIIQ-C---GNAIEAVPVAVK-------THPHLIITEANMPKI-- 65 (147)
T ss_dssp --CEEEEEECTTGGG----GHHHHHHHHH-H--TEEEEE-E---SSHHHHHHHHHH-------HCCSEEEEESCCSSS--
T ss_pred CCCceEEEEeCCHHH----HHHHHHHHHH-c--CCeEEE-e---CCHHHHHHHHHc-------CCCCEEEEcCCCCCC--
Confidence 356789999998654 1123333332 2 233331 1 122344444443 368999998765542
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++ ..+...||+++...
T Consensus 66 ------------~-----g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 66 ------------S-----GMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp ------------C-----HHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred ------------C-----HHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 1 1356666776 45788999887654
No 36
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7-dihydroxycoum transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa}
Probab=70.93 E-value=9.8 Score=31.00 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhc-CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeE
Q 025181 89 LGPHVPLPEYVENMRRIATHLKSLS-CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKV 167 (256)
Q Consensus 89 ~~~~~~~~~~~~~l~~li~~i~~~~-~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~ 167 (256)
..++...+--...|..+++.|++.+ |+++|.+++- ...+.. .+....+.+..|.+.+++++.+.+...
T Consensus 80 ~lPD~gEelAL~~Ln~lc~~I~~vY~PGa~v~IiSD-----G~VfnD------ligV~D~~v~~Yg~~Lr~m~~~~g~~~ 148 (330)
T 3e59_A 80 SRPDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSD-----GRVFGD------LVRIGDAHISAYQDALRLMIEEIGATH 148 (330)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHSTTCEEEEECCC-----HHHHGG------GTTCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC-----Cceecc------ccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 3455555666778999999999887 8998888752 222221 222445678899999999999887443
Q ss_pred E
Q 025181 168 V 168 (256)
Q Consensus 168 v 168 (256)
|
T Consensus 149 I 149 (330)
T 3e59_A 149 I 149 (330)
T ss_dssp E
T ss_pred e
Confidence 3
No 37
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=70.82 E-value=21 Score=23.98 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=46.8
Q ss_pred CCCCCCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 1 MVGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 1 ~~~p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
|.-....+|+++.|+-.. ...+.+.+.. .+.+.... +. .+.+. .+ ...+||+|++-+...
T Consensus 1 M~~~~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~----~~---~~a~~-~l---~~~~~dlvi~D~~l~ 61 (136)
T 3kto_A 1 MSLNHHPIIYLVDHQKDA--------RAALSKLLSPLDVTIQCFA----SA---ESFMR-QQ---ISDDAIGMIIEAHLE 61 (136)
T ss_dssp ------CEEEEECSCHHH--------HHHHHHHHTTSSSEEEEES----SH---HHHTT-SC---CCTTEEEEEEETTGG
T ss_pred CCCCCCCeEEEEcCCHHH--------HHHHHHHHHHCCcEEEEeC----CH---HHHHH-HH---hccCCCEEEEeCcCC
Confidence 333445789999998553 2234444442 23333111 11 12222 22 246799999987654
Q ss_pred C--CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 80 D--SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 80 D--~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ . +-.++++.+++..+..+||+++...
T Consensus 62 ~~~~-------------------~g~~~~~~l~~~~~~~~ii~~s~~~ 90 (136)
T 3kto_A 62 DKKD-------------------SGIELLETLVKRGFHLPTIVMASSS 90 (136)
T ss_dssp GBTT-------------------HHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred CCCc-------------------cHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 4 2 1235667777777889999988655
No 38
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=67.04 E-value=18 Score=24.83 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=47.7
Q ss_pred CCCceEEEEcccccccccCCCChHHHHHHHhhcc--ccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 4 PARPQFVLFGSSIVQLSFSNGGWGAILSDIYARK--ADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~--~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
+.+.+|+++.|+-.. ...+.+.+... ..++.... +.......+.+ ..||+|++-+...+.
T Consensus 13 ~~~~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~~-------~~~dlii~d~~l~~~ 74 (152)
T 3eul_A 13 PEKVRVVVGDDHPLF--------REGVVRALSLSGSVNVVGEAD---DGAAALELIKA-------HLPDVALLDYRMPGM 74 (152)
T ss_dssp -CCEEEEEECSSHHH--------HHHHHHHHHHHSSEEEEEEES---SHHHHHHHHHH-------HCCSEEEEETTCSSS
T ss_pred CceEEEEEEcCCHHH--------HHHHHHHHhhCCCeEEEEEeC---CHHHHHHHHHh-------cCCCEEEEeCCCCCC
Confidence 356789999998553 12233333321 11221121 22334444433 368999998865543
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++..+..+||+++...
T Consensus 75 --------------~-----g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 75 --------------D-----GAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp --------------C-----HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred --------------C-----HHHHHHHHHhcCCCCeEEEEEccC
Confidence 1 135566677777888999987655
No 39
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=64.44 E-value=7.8 Score=28.53 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=43.5
Q ss_pred CCCC-CCceEEEEcccccccccCCCChHHHHHHHhh----ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEE
Q 025181 1 MVGP-ARPQFVLFGSSIVQLSFSNGGWGAILSDIYA----RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVY 75 (256)
Q Consensus 1 ~~~p-~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~----~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~ 75 (256)
|++. .+-.|+.+||.+..|.- .+.=...|++.+. ..+++ ..++-++....+...+.+.+. ....|+||..
T Consensus 1 ~~~~~~rv~IistGdE~~~G~i-~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~---~~~~DlVitt 75 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKGIY-EDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELAD---EKGCSLILTT 75 (178)
T ss_dssp ----CCEEEEEEECHHHHHTSS-CCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHH---TSCCSEEEEE
T ss_pred CCCCCCEEEEEEeCCcCCCCCe-ecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEC
Confidence 5554 34448889999876332 2333344555443 24556 566778887777777777652 1267999888
Q ss_pred ecc
Q 025181 76 VGG 78 (256)
Q Consensus 76 ~G~ 78 (256)
.|+
T Consensus 76 GG~ 78 (178)
T 2pbq_A 76 GGT 78 (178)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 40
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=63.26 E-value=11 Score=28.17 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=46.8
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc----cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR----KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~----~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
+-.|+.+||.+..|. ..+.-...|++.+.+ ...+...++-++....+...+.+.+. ....|+|++..|+
T Consensus 16 rv~IistGdEl~~g~-~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~---~~~~DlVIttGGt 88 (189)
T 1jlj_A 16 RVGVLTVSDSCFRNL-AEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCD---EKELNLILTTGGT 88 (189)
T ss_dssp EEEEEEECHHHHTTS-SCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEEEECCccCCCc-ccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhh---cCCCCEEEEcCCC
Confidence 334899999998743 233444556666653 45667778888888888887777652 1367999888875
No 41
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=62.66 E-value=7.1 Score=28.37 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=41.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-|+.+||.+..|-- .+.-...|++.+.+ ..++...++-.+. ..+.+.+.+.+ ....|+|+...|+
T Consensus 11 ~ii~tGdEl~~G~i-~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~----~~~~DlVittGG~ 76 (164)
T 3pzy_A 11 RVIIASTRASSGEY-EDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI----DDDVDVILTSGGT 76 (164)
T ss_dssp EEEEECHHHHC-----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH----HTTCSEEEEESCC
T ss_pred EEEEECCCCCCCce-eeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH----hCCCCEEEECCCC
Confidence 48899999986332 23334445544432 3566667777778 77777777765 2357999988775
No 42
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=62.26 E-value=31 Score=25.73 Aligned_cols=90 Identities=7% Similarity=0.091 Sum_probs=48.2
Q ss_pred CCCCCCceEEEEcccccccccCCCChHHHHHHHhhc--cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 1 MVGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR--KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 1 ~~~p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
|......+|+++-|.-.. ...+...+.. .+.+...... . ...+...+ ....||+|++-+..
T Consensus 2 M~~~~~~~IlivdD~~~~--------~~~l~~~L~~~~~~~v~~~~~~---~---~~~~~~~~---~~~~~dlvllD~~m 64 (225)
T 3klo_A 2 MKDENKLNVRMLSDVCMQ--------SRLLKEALESKLPLALEITPFS---E---LWLEENKP---ESRSIQMLVIDYSR 64 (225)
T ss_dssp --CCSSEEEEEESCCSHH--------HHHHHHHHHHHSSEEEEEECGG---G---HHHHTTCS---GGGGCCEEEEEGGG
T ss_pred CCCCCceEEEEEcCcHHH--------HHHHHHHHhhCCCceEEEEeCC---c---HHHHHHHh---hccCCCEEEEeCCC
Confidence 444456689999998543 2234444431 2333322211 1 11122212 13578999998765
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh-hcCCceEEEEcCCCC
Q 025181 79 NDSMGPHPSGLGPHVPLPEYVENMRRIATHLKS-LSCATRIIFLSTPPV 126 (256)
Q Consensus 79 ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~-~~~~~~vi~~~~~p~ 126 (256)
-+. + =-++++.+++ ..|..+||+++...-
T Consensus 65 p~~--------------~-----G~~~~~~lr~~~~~~~~ii~lt~~~~ 94 (225)
T 3klo_A 65 ISD--------------D-----VLTDYSSFKHISCPDAKEVIINCPQD 94 (225)
T ss_dssp CCH--------------H-----HHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred CCC--------------C-----HHHHHHHHHHhhCCCCcEEEEECCcc
Confidence 442 1 1345666666 678899999987643
No 43
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=61.92 E-value=27 Score=23.39 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=45.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc--cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR--KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
...+|+++.|+-.. ...+.+.+.. .+.++.... +.......+.+ ..||+|++-+...+.
T Consensus 7 ~~~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~~-------~~~dlii~d~~l~~~- 67 (143)
T 3cnb_A 7 NDFSILIIEDDKEF--------ADMLTQFLENLFPYAKIKIAY---NPFDAGDLLHT-------VKPDVVMLDLMMVGM- 67 (143)
T ss_dssp --CEEEEECSCHHH--------HHHHHHHHHHHCTTCEEEEEC---SHHHHHHHHHH-------TCCSEEEEETTCTTS-
T ss_pred CCceEEEEECCHHH--------HHHHHHHHHhccCccEEEEEC---CHHHHHHHHHh-------cCCCEEEEecccCCC-
Confidence 45689999988553 1223333332 233121111 22333444433 368999998765442
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++ ..+...||+++...
T Consensus 68 -------------~-----g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 68 -------------D-----GFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp -------------C-----HHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred -------------c-----HHHHHHHHHhCccccCCcEEEEeCCC
Confidence 1 1345666666 45788898887654
No 44
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=60.81 E-value=25 Score=24.13 Aligned_cols=83 Identities=13% Similarity=0.025 Sum_probs=46.7
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|+-.. ...+...+.. .+.+.. . .+.......+. ...||+|++-+...+.
T Consensus 6 ~~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~-------~~~~dlvi~d~~l~~~-- 64 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI--------LNSLKRLIKRLGCNIIT-F---TSPLDALEALK-------GTSVQLVISDMRMPEM-- 64 (154)
T ss_dssp SCCEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-E---SCHHHHHHHHT-------TSCCSEEEEESSCSSS--
T ss_pred CCCeEEEEcCCHHH--------HHHHHHHHHHcCCeEEE-e---CCHHHHHHHHh-------cCCCCEEEEecCCCCC--
Confidence 45689999998553 2234444432 233331 1 12233333332 2468999998765542
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. ..+++.+++..+..+||+++...
T Consensus 65 ------------~g-----~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 65 ------------GG-----EVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp ------------CH-----HHHHHHHHHHCTTSEEEEEECGG
T ss_pred ------------CH-----HHHHHHHHHhCCCCcEEEEecCC
Confidence 11 24566666667888999887654
No 45
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=59.29 E-value=19 Score=24.10 Aligned_cols=82 Identities=11% Similarity=0.154 Sum_probs=46.6
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhcc-ccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARK-ADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~-~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+... ..+.... +.......+.+ ..||+|++-+...+.
T Consensus 7 ~~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~~~----~~~~a~~~l~~-------~~~dlvi~d~~l~~~--- 64 (137)
T 3hdg_A 7 ALKILIVEDDTDA--------REWLSTIISNHFPEVWSAG----DGEEGERLFGL-------HAPDVIITDIRMPKL--- 64 (137)
T ss_dssp CCCEEEECSCHHH--------HHHHHHHHHTTCSCEEEES----SHHHHHHHHHH-------HCCSEEEECSSCSSS---
T ss_pred ccEEEEEeCCHHH--------HHHHHHHHHhcCcEEEEEC----CHHHHHHHHhc-------cCCCEEEEeCCCCCC---
Confidence 4589999988553 22344444321 2222111 22344444433 368999998765543
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++..+...|++++...
T Consensus 65 -----------~-----g~~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 65 -----------G-----GLEMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp -----------C-----HHHHHHHHHHTTCCCEEEECCCCC
T ss_pred -----------C-----HHHHHHHHHhcCCCCcEEEEecCc
Confidence 1 135566677777888888887655
No 46
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=58.90 E-value=7.2 Score=28.63 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=43.9
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
--|+.+||.+..|-- .+.=...|++.+. ..+.+...++-++....+...+.+.+. ..|+|+...|+
T Consensus 6 v~IistGdEll~G~i-~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~-----~~DlVittGG~ 72 (172)
T 3kbq_A 6 ASVITVGNEILKGRT-VNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE-----VSDLVVSSGGL 72 (172)
T ss_dssp EEEEEECHHHHTTSS-CCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-----HCSEEEEESCC
T ss_pred EEEEEEcccccCCcE-EeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 358999999987332 2333334554443 246677777888888888877777652 37999988775
No 47
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=57.73 E-value=20 Score=24.12 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=27.8
Q ss_pred CCCcEEEEEeccC-CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGN-DSMGPHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~N-D~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
..||+|++-+... +. +-.++++.+++ ..+..+||+++...
T Consensus 49 ~~~dlvi~D~~l~~~~-------------------~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 49 DSITLIIMDIAFPVEK-------------------EGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp CCCSEEEECSCSSSHH-------------------HHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred CCCcEEEEeCCCCCCC-------------------cHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 6799999976544 31 22456667777 66889999998654
No 48
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=56.73 E-value=35 Score=22.82 Aligned_cols=83 Identities=8% Similarity=0.067 Sum_probs=46.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|+-.. ...+.+.+.. .+.+... .+.......+. ...||+|++-+...+.
T Consensus 6 ~~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~-------~~~~dlii~d~~l~~~-- 64 (142)
T 3cg4_A 6 HKGDVMIVDDDAHV--------RIAVKTILSDAGFHIISA----DSGGQCIDLLK-------KGFSGVVLLDIMMPGM-- 64 (142)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE----SSHHHHHHHHH-------TCCCEEEEEESCCSSS--
T ss_pred CCCeEEEEcCCHHH--------HHHHHHHHHHCCeEEEEe----CCHHHHHHHHH-------hcCCCEEEEeCCCCCC--
Confidence 56789999988543 2234433332 2333211 12233333333 2468999998765442
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++ ..+...||+++...
T Consensus 65 ------------~-----g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 65 ------------D-----GWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp ------------C-----HHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred ------------C-----HHHHHHHHHhhcccCCCCEEEEECCC
Confidence 1 1245666666 55788899887654
No 49
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=56.54 E-value=14 Score=27.39 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=44.5
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-|+..||.+..|- .+.-...|++.+.+ ..++...++-.+....+...+.+.+ ..+.|+|+...|+
T Consensus 34 aIistGdEl~~G~--~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~----~~~~DlVIttGGt 99 (185)
T 3rfq_A 34 LVVVVDDRTAHGD--EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAV----IGGVDLVVSVGGT 99 (185)
T ss_dssp EEEEECHHHHTTC--CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHH----HTTCSEEEEESCC
T ss_pred EEEEECcccCCCC--cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEECCCC
Confidence 3788899998644 44445555555542 3567777777888777777777654 2357999988775
No 50
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=55.58 E-value=55 Score=24.55 Aligned_cols=42 Identities=5% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhh-cCCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSL-SCATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~-~~~~~vi~~~~~ 124 (256)
..+.+++.+-.+|. ...+++...+..+++. .++..+++++.-
T Consensus 85 ~a~~~ilv~di~~~---------------~Sf~~i~~~~~~i~~~~~~~~piilVgNK 127 (216)
T 4dkx_A 85 DSAAAVVVYDITNV---------------NSFQQTTKWIDDVRTERGSDVIIMLVGNK 127 (216)
T ss_dssp TCSEEEEEEETTCH---------------HHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred cccEEEEEeecchh---------------HHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 45788888766653 2234455555555544 367788887643
No 51
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=54.67 E-value=32 Score=22.96 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...||+|++-+...+.. -.++++.+++..+..+||+++...
T Consensus 57 ~~~~dlvi~D~~l~~~~-------------------g~~~~~~l~~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 57 DTRPGIVILDLGGGDLL-------------------GKPGIVEARALWATVPLIAVSDEL 97 (135)
T ss_dssp TCCCSEEEEEEETTGGG-------------------GSTTHHHHHGGGTTCCEEEEESCC
T ss_pred ccCCCEEEEeCCCCCch-------------------HHHHHHHHHhhCCCCcEEEEeCCC
Confidence 56799999988655431 023556667776788999887654
No 52
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=54.44 E-value=14 Score=26.67 Aligned_cols=67 Identities=7% Similarity=-0.070 Sum_probs=45.4
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||.+..|.- .+.-...|++.+.. .+.+...++-++....+.+.+.+.+. ....|+|+...|+
T Consensus 5 ~Ii~tGdEl~~G~i-~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 72 (164)
T 2is8_A 5 GILTVSDKGFRGER-QDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWAD---REGLDLILTNGGT 72 (164)
T ss_dssp EEEEECHHHHHTSS-CCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEEcCcccCCCc-ccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEcCCC
Confidence 58899999876332 33444556666653 45666777888888888887777652 1257999888775
No 53
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.99 E-value=26 Score=23.46 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=45.4
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
+..+|+++.|+-.. ...+...+.. .+.+... .+.......+.+. ..||+|++-+...+.
T Consensus 14 ~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~al~~l~~~------~~~dlvilD~~l~~~-- 73 (138)
T 2b4a_A 14 QPFRVTLVEDEPSH--------ATLIQYHLNQLGAEVTVH----PSGSAFFQHRSQL------STCDLLIVSDQLVDL-- 73 (138)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE----SSHHHHHHTGGGG------GSCSEEEEETTCTTS--
T ss_pred CCCeEEEECCCHHH--------HHHHHHHHHHcCCEEEEe----CCHHHHHHHHHhC------CCCCEEEEeCCCCCC--
Confidence 56789999998653 1233333331 2333211 1223333333220 468999997765442
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc-CCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS-TPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~-~~p 125 (256)
+. .++++.+++..+...|++++ ...
T Consensus 74 ------------~g-----~~~~~~l~~~~~~~~ii~ls~~~~ 99 (138)
T 2b4a_A 74 ------------SI-----FSLLDIVKEQTKQPSVLILTTGRH 99 (138)
T ss_dssp ------------CH-----HHHHHHHTTSSSCCEEEEEESCC-
T ss_pred ------------CH-----HHHHHHHHhhCCCCCEEEEECCCC
Confidence 11 24566666666889999987 543
No 54
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=53.97 E-value=13 Score=26.89 Aligned_cols=68 Identities=6% Similarity=0.067 Sum_probs=44.4
Q ss_pred CceEEEEcccccccccCCCChHHHHHHH----hhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDI----YAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~----~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
+--|+.+||.+..|-- .+.-...|++. +.+ .+++...++-++....+.+.+.+.+. ...|+|+...|+
T Consensus 7 ~v~Ii~~GdEl~~G~i-~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~----~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTR-ENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALK----QGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSS-CCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHH----TTCSEEEEESCC
T ss_pred EEEEEEECCcccCCce-eccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHh----CCCCEEEECCCC
Confidence 3458999999986432 33444456665 442 45666677888888788887777652 247999888875
No 55
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=53.00 E-value=34 Score=24.69 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=42.7
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-.|+.+||.+ + -..+.-...|++.+.. .+.+...++.++....+...+.+.+. ..+.|+|+...|+
T Consensus 16 v~Ii~tGdEl--g-~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 82 (169)
T 1y5e_A 16 CKIVTISDTR--T-EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYH---KEDVDVVLTNGGT 82 (169)
T ss_dssp EEEEEECSSC--C-TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHT---CTTCSEEEEECCC
T ss_pred EEEEEEcCcc--C-eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEEcCCC
Confidence 3478889998 2 1122233344444432 35677778888888888888877652 1367999888875
No 56
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=52.24 E-value=52 Score=22.33 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=28.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+...+. + -..+++.+++..+...||+++...
T Consensus 65 ~~~dlii~D~~l~~~--------------~-----g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 65 ESVDIAILDVEMPVK--------------T-----GLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp SCCSEEEECSSCSSS--------------C-----HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred cCCCEEEEeCCCCCC--------------c-----HHHHHHHHHHhCCCCeEEEEeCCC
Confidence 568999998765543 1 134566667777889999988665
No 57
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=52.19 E-value=53 Score=22.36 Aligned_cols=84 Identities=11% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc--cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR--KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
...+|+++.|+-.. ...+...+.. .+.+..... +.......+. ...||+|++-+...+.
T Consensus 4 ~~~~ILivdd~~~~--------~~~l~~~L~~~~~~~v~~~~~---~~~~a~~~l~-------~~~~dlii~D~~l~~~- 64 (153)
T 3cz5_A 4 STARIMLVDDHPIV--------REGYRRLIERRPGYAVVAEAA---DAGEAYRLYR-------ETTPDIVVMDLTLPGP- 64 (153)
T ss_dssp CCEEEEEECSCHHH--------HHHHHHHHTTSTTEEEEEEES---SHHHHHHHHH-------TTCCSEEEECSCCSSS-
T ss_pred cccEEEEECCcHHH--------HHHHHHHHhhCCCcEEEEEeC---CHHHHHHHHh-------cCCCCEEEEecCCCCC-
Confidence 34679999888543 2335555542 233321111 2233333332 2468999997754442
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++..+...|++++...
T Consensus 65 -------------~-----g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 65 -------------G-----GIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp -------------C-----HHHHHHHHHHHCTTCCEEEEESCC
T ss_pred -------------C-----HHHHHHHHHHhCCCCeEEEEECCC
Confidence 1 124566667767888898887654
No 58
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=51.83 E-value=27 Score=25.58 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred ceEEEEccccc----ccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 7 PQFVLFGSSIV----QLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 7 ~~i~~iGDS~t----~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
--|+.+||++. .++-..+.-...|++.+.+ ..++...++-.+....+...+.+.+. ....|+|++..|+
T Consensus 18 v~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~---~~~~DlVittGG~ 91 (178)
T 2pjk_A 18 FYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS---IDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT---CTTCCEEEEESCC
T ss_pred EEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 34888999877 3122122333344444432 35677777888888888888877653 1247999988764
No 59
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=50.39 E-value=33 Score=27.41 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|.+-- ++.+. +.+..| ++.+.+.+.+.+|++.+++++.|
T Consensus 68 ~~aDiVViaag~~~k---------pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNP 120 (294)
T 1oju_A 68 KGSEIIVVTAGLARK---------PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCCC---------SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEECCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence 356999999886521 22333 333333 66777888888899999888855
No 60
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=50.23 E-value=28 Score=28.34 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- ++.+ .+.+..| ++.+++.+.+..|++.+++++.|
T Consensus 72 ~~aDvVvi~ag~p~k---------pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP 124 (326)
T 3pqe_A 72 KDADIVCICAGANQK---------PGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124 (326)
T ss_dssp TTCSEEEECCSCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEEecccCCC---------CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence 356999999886321 2222 3334444 67888888888899988888765
No 61
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=50.10 E-value=30 Score=28.73 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred CCchHHHHHHhhhh-CCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 47 GWNSRRALQVLDQV-FPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 47 G~~s~~~~~~~~~~-~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
|.+...++..+++. .+.....+||+|++..|.. ......- .....+.+.|..-.+.+.+..++......++++.
T Consensus 235 g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~D-a~~~DpL-g~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vle 309 (369)
T 1zz1_A 235 GSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFD-ASMLDPL-ARMMVTADGFRQMARRTIDCAADICDGRIVFVQE 309 (369)
T ss_dssp TCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCT-TBTTCTT-CCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCcc-CCCCCCC-CCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 44445555555442 1212356899999999954 3222111 1355667777777666666655543333444443
No 62
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=49.58 E-value=38 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
..|+|++..|..-- ++.+. +.+..| ++.+.+.+.+..|++.+++++.|
T Consensus 69 ~aDivii~ag~~rk---------pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 120 (312)
T 3hhp_A 69 GADVVLISAGVARK---------PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120 (312)
T ss_dssp TCSEEEECCSCSCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred CCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 45888888886431 22333 334444 66777778888899988888765
No 63
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=49.55 E-value=52 Score=21.55 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=42.2
Q ss_pred CCCCCCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 1 MVGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 1 ~~~p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
|......+|+++.|+-.. ...+.+.+.. .+.+... .+.......+.+ ..||+|++-+...
T Consensus 1 M~~~~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~-------~~~dlii~d~~l~ 61 (132)
T 3lte_A 1 MSLKQSKRILVVDDDQAM--------AAAIERVLKRDHWQVEIA----HNGFDAGIKLST-------FEPAIMTLDLSMP 61 (132)
T ss_dssp ------CEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE----SSHHHHHHHHHH-------TCCSEEEEESCBT
T ss_pred CCCCCCccEEEEECCHHH--------HHHHHHHHHHCCcEEEEe----CCHHHHHHHHHh-------cCCCEEEEecCCC
Confidence 333456789999988553 1223333332 2333321 122333443332 4689999987665
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc--CCceEEEEcCC
Q 025181 80 DSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS--CATRIIFLSTP 124 (256)
Q Consensus 80 D~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~ 124 (256)
|. + -.++++.+++.. +...|++++..
T Consensus 62 ~~--------------~-----g~~~~~~l~~~~~~~~~~ii~~~~~ 89 (132)
T 3lte_A 62 KL--------------D-----GLDVIRSLRQNKVANQPKILVVSGL 89 (132)
T ss_dssp TB--------------C-----HHHHHHHHHTTTCSSCCEEEEECCS
T ss_pred CC--------------C-----HHHHHHHHHhcCccCCCeEEEEeCC
Confidence 53 1 134566667654 34556555543
No 64
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=49.41 E-value=29 Score=25.03 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=42.6
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc------cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR------KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~------~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-|+.+||.+..|. ..+.-...+++.+.. .+++...++-.+....+.+.+.+.+. ..+.|+|+...|+
T Consensus 9 ~IistGde~~~G~-~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 81 (167)
T 1uuy_A 9 AILTVSDTVSAGA-GPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSD---VDEMDLILTLGGT 81 (167)
T ss_dssp EEEEECHHHHTTS-SCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEECCcccCCC-CccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 4788999986532 223223344444432 35666777888888788887777642 1367999888775
No 65
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=48.56 E-value=42 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=33.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- . -....+.+..| ++.+++.+.+..|++.+++++.|
T Consensus 88 ~daDiVIitaG~p~k-----p---G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 88 AGSKLVVITAGARQQ-----E---GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp SSCSEEEECCSCCCC-----S---SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCC-----C---CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 456999999987531 1 11223444444 66778888888899999888866
No 66
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=48.24 E-value=69 Score=26.55 Aligned_cols=88 Identities=9% Similarity=0.203 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccc
Q 025181 104 RIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNA 183 (256)
Q Consensus 104 ~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~ 183 (256)
..+..+|..+|++++.++--..+ ++ .+-++.++++|++.++.+||..+.-.+..-| .
T Consensus 154 ~~Lle~re~nPG~~i~LVYsStl------------------Ln---~~a~~ql~~faken~IsllDids~k~e~~Ly--n 210 (525)
T 3jsz_A 154 EALKRRREQYPGCKIRLIYSSSL------------------LN---PEANRQMKAFAKKQNISLIDIDSVKTDSPLY--P 210 (525)
T ss_dssp HHHHHHHHHCTTCEEEEEECSTT------------------SC---HHHHHHHHHHHHHTTEEEEEGGGCCCCCTHH--H
T ss_pred HHHHHHHhhCCCCeEEEEeehhh------------------cC---HHHHHHHHHHHHhcCceEeehhhhcchHHHH--H
Confidence 33344788889988877743221 11 2345667799999999999998765332211 1
Q ss_pred ccccc-ccCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q 025181 184 CFTDG-IHLSEEGSKIVVAEILKVLKQAEWKPSLHWKS 220 (256)
Q Consensus 184 ~~~Dg-~Hp~~~G~~~ia~~l~~~l~~~~~~~~~~~~~ 220 (256)
++.+- -|.+.-|+-..|.-|.. |-+++=.++
T Consensus 211 l~k~EL~nLg~GGNpAaASDivR------Wlspv~~~g 242 (525)
T 3jsz_A 211 LIKAELANLGMGGNPAAASDLCR------WIPELFNEG 242 (525)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHT------TCTTTCSSE
T ss_pred HHHHHHHhccCCCCHHHHHHHHH------hhHHhcccC
Confidence 22232 47888999888888864 655555444
No 67
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=47.71 E-value=49 Score=21.90 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=46.6
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|+-.. ...+.+.+.. .+.+... .+.......+.+ ...||+|++-+...+.
T Consensus 6 ~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~~~~------~~~~dlvi~D~~l~~~-- 65 (136)
T 3hdv_A 6 ARPLVLVVDDNAVN--------REALILYLKSRGIDAVGA----DGAEEARLYLHY------QKRIGLMITDLRMQPE-- 65 (136)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCCEEEE----SSHHHHHHHHHH------CTTEEEEEECSCCSSS--
T ss_pred CCCeEEEECCCHHH--------HHHHHHHHHHcCceEEEe----CCHHHHHHHHHh------CCCCcEEEEeccCCCC--
Confidence 46789999998553 1223333332 2333321 122333343333 1248999997765443
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhh-cCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSL-SCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~-~~~~~vi~~~~~p 125 (256)
+ -.++++.+++. .+...|++++...
T Consensus 66 ------------~-----g~~~~~~l~~~~~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 66 ------------S-----GLDLIRTIRASERAALSIIVVSGDT 91 (136)
T ss_dssp ------------C-----HHHHHHHHHTSTTTTCEEEEEESSC
T ss_pred ------------C-----HHHHHHHHHhcCCCCCCEEEEeCCC
Confidence 1 13466667776 5788898887654
No 68
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=47.68 E-value=63 Score=21.92 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=47.7
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCC-CcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQ-PSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~-pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+...+.+... .+.......+.+ .+ +|+|++.+...+.
T Consensus 4 ~~~ILivdd~~~~--------~~~l~~~L~~~~~v~~~----~~~~~a~~~l~~-------~~~~dlvi~D~~l~~~--- 61 (151)
T 3kcn_A 4 NERILLVDDDYSL--------LNTLKRNLSFDFEVTTC----ESGPEALACIKK-------SDPFSVIMVDMRMPGM--- 61 (151)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTTSEEEEE----SSHHHHHHHHHH-------SCCCSEEEEESCCSSS---
T ss_pred CCeEEEEeCCHHH--------HHHHHHHhccCceEEEe----CCHHHHHHHHHc-------CCCCCEEEEeCCCCCC---
Confidence 3589999988543 23355555433433321 123344444433 23 5999999876553
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++..+...||+++...
T Consensus 62 -----------~-----g~~~~~~l~~~~~~~~ii~~s~~~ 86 (151)
T 3kcn_A 62 -----------E-----GTEVIQKARLISPNSVYLMLTGNQ 86 (151)
T ss_dssp -----------C-----HHHHHHHHHHHCSSCEEEEEECGG
T ss_pred -----------c-----HHHHHHHHHhcCCCcEEEEEECCC
Confidence 1 134556667777889998887654
No 69
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=46.16 E-value=28 Score=28.32 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- ++. ..+.+..| ++.+++.+.+..|++.+++++.|
T Consensus 74 ~~aDiVIiaag~p~k---------~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 74 EGADVVIVTAGVPRK---------PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp TTCSEEEECCSCCCC--------------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEccCcCCC---------CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 456999999986421 112 23334434 67788888888899988888865
No 70
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=45.56 E-value=33 Score=27.74 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|.+-- + -....+.+..| ++.+.+.+.+..|++.+++++.|
T Consensus 68 ~~aDvVii~ag~~~k--p------G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 120 (314)
T 3nep_X 68 EDSDVCIITAGLPRS--P------GMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP 120 (314)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred CCCCEEEECCCCCCC--C------CCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 456999999987531 0 11233444444 66777888888899988888765
No 71
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=44.67 E-value=48 Score=26.83 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- ++.+. +.+..| ++.+++.+.+..|++.+++++.|
T Consensus 72 ~~aDvVIi~ag~p~k---------~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 124 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRK---------PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP 124 (321)
T ss_dssp TTCSEEEECCSCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEcCCcCCC---------CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 356999999886421 22233 333333 67788888888899998888755
No 72
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=44.53 E-value=81 Score=23.94 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
..||+|++-+...|. +-.++++.+++ .+..+||+++....
T Consensus 80 ~~~DlvllD~~lp~~-------------------~G~~l~~~lr~-~~~~~iI~lt~~~~ 119 (249)
T 3q9s_A 80 DHPDLILLDLGLPDF-------------------DGGDVVQRLRK-NSALPIIVLTARDT 119 (249)
T ss_dssp SCCSEEEEECCSCHH-------------------HHHHHHHHHHT-TCCCCEEEEESCCS
T ss_pred CCCCEEEEcCCCCCC-------------------CHHHHHHHHHc-CCCCCEEEEECCCC
Confidence 468999997754432 22345666666 47889999887653
No 73
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=44.43 E-value=37 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=33.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- . -....+.+..| +..+.+.+.+..|++.+++++.|
T Consensus 86 ~~aDiVvi~aG~~~k-----p---G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 138 (331)
T 4aj2_A 86 ANSKLVIITAGARQQ-----E---GESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138 (331)
T ss_dssp TTEEEEEECCSCCCC-----T---TCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEccCCCCC-----C---CccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 356899999886421 1 12233445554 66777788888899999888866
No 74
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=44.35 E-value=48 Score=19.62 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEE
Q 025181 94 PLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVV 168 (256)
Q Consensus 94 ~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~v 168 (256)
+++.|.+.++.+++..|+.. +..-+-+....+.- ... +-. .+...++......++++.|+.+-
T Consensus 11 dleafekalkemirqarkfa-gtvtytldgndlei-rit-------gvp---eqvrkelakeaerlakefnitvt 73 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQARKFA-GTVTYTLDGNDLEI-RIT-------GVP---EQVRKELAKEAERLAKEFNITVT 73 (85)
T ss_dssp SHHHHHHHHHHHHHHHTTTT-CEEEEEECSSCEEE-EEE-------SCC---HHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHhhc-ceEEEEecCCeeEE-EEe-------cCh---HHHHHHHHHHHHHHHHhcCeEEE
Confidence 36899999999999988874 43333333332210 000 001 12234555666778888887653
No 75
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=44.11 E-value=50 Score=26.66 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- ++.+. +.+..| ++.+++.+.+..|++.+++++.|
T Consensus 77 ~~aDvVIiaag~p~k---------pg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP 129 (315)
T 3tl2_A 77 ADSDVVVITAGIARK---------PGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP 129 (315)
T ss_dssp TTCSEEEECCSCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence 456999999996431 22233 334443 66777888888899988888765
No 76
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=43.93 E-value=39 Score=27.32 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|..-- .+.........-..-++.+++.+.+..|++.+++++.|
T Consensus 71 ~~aDvVii~ag~~~~-----~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 123 (318)
T 1ez4_A 71 KDADLVVITAGAPQK-----PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP 123 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEECCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 356999999987421 11011111222334467777888888899999997555
No 77
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=43.87 E-value=45 Score=22.33 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=47.2
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+...+.. .+.+.. ..+.......+... ...||+|++.+...+.
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~g~~v~~----~~~~~~a~~~~~~~-----~~~~dlvi~d~~l~~~--- 62 (143)
T 3jte_A 3 LAKILVIDDESTI--------LQNIKFLLEIDGNEVLT----ASSSTEGLRIFTEN-----CNSIDVVITDMKMPKL--- 62 (143)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE----ESSHHHHHHHHHHT-----TTTCCEEEEESCCSSS---
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCceEEE----eCCHHHHHHHHHhC-----CCCCCEEEEeCCCCCC---
Confidence 4589999988543 2233333331 232321 11234444444431 3578999998765543
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -..+++.+++..+..+||+++...
T Consensus 63 -----------~-----g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 63 -----------S-----GMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp -----------C-----HHHHHHHHHHHCTTCEEEEEECTT
T ss_pred -----------c-----HHHHHHHHHHhCCCCeEEEEECCC
Confidence 1 134566666667889999988655
No 78
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=43.73 E-value=46 Score=26.75 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=31.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|..-. . .....+.+. .-+..+++.+++..|++.|++++.|
T Consensus 67 ~~aDvVvi~ag~~~~-----~---g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP 119 (314)
T 1mld_A 67 KGCDVVVIPAGVPRK-----P---GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (314)
T ss_dssp TTCSEEEECCSCCCC-----T---TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred CCCCEEEECCCcCCC-----C---CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence 356889998886421 0 111123333 3466777777888899988887655
No 79
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=43.49 E-value=76 Score=23.96 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++-|.-.. ...+...+.. .+.+.. . .+.......+.+ ..||+|++-+...+.
T Consensus 22 ~~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~al~~~~~-------~~~dlvllD~~lp~~-- 80 (250)
T 3r0j_A 22 PEARVLVVDDEANI--------VELLSVSLKFQGFEVYT-A---TNGAQALDRARE-------TRPDAVILDVXMPGM-- 80 (250)
T ss_dssp SSCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-E---SSHHHHHHHHHH-------HCCSEEEEESCCSSS--
T ss_pred CCceEEEEECCHHH--------HHHHHHHHHHCCCEEEE-E---CCHHHHHHHHHh-------CCCCEEEEeCCCCCC--
Confidence 35689999887543 2223333331 233331 1 122344444433 368999998765553
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
+ -.++++.+++..+..+|++++....
T Consensus 81 ------------~-----g~~~~~~lr~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 81 ------------D-----GFGVLRRLRADGIDAPALFLTARDS 106 (250)
T ss_dssp ------------C-----HHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred ------------C-----HHHHHHHHHhcCCCCCEEEEECCCC
Confidence 1 1346666777778889999887653
No 80
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=43.24 E-value=67 Score=21.00 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=45.5
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
+.+|+++.|+-.. ...+...+...+.+... .+.......+.+ .+||+|++-+...+.
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~l~~~~~v~~~----~~~~~a~~~l~~-------~~~dlvi~d~~l~~~---- 60 (133)
T 3nhm_A 4 KPKVLIVENSWTM--------RETLRLLLSGEFDCTTA----ADGASGLQQALA-------HPPDVLISDVNMDGM---- 60 (133)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHTTTSEEEEE----SSHHHHHHHHHH-------SCCSEEEECSSCSSS----
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHhCCcEEEEE----CCHHHHHHHHhc-------CCCCEEEEeCCCCCC----
Confidence 4689999988553 22344444433433321 122334443333 468999997654442
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhh--cCCceEEEEcCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSL--SCATRIIFLSTPP 125 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~--~~~~~vi~~~~~p 125 (256)
+ -.++++.+++. .+..+|++++...
T Consensus 61 ----------~-----g~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 61 ----------D-----GYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp ----------C-----HHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred ----------C-----HHHHHHHHHhCCccCCCCEEEEeCCC
Confidence 1 13455566665 3578888888754
No 81
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.88 E-value=51 Score=22.17 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=28.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+...|. +-..+++.+++..+...||+++...
T Consensus 66 ~~~dlvi~D~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 66 DAFDILMIDGAALDT-------------------AELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp TTCSEEEEECTTCCH-------------------HHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCc-------------------cHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 578999998765442 1235666677777889999988654
No 82
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.82 E-value=70 Score=20.75 Aligned_cols=82 Identities=10% Similarity=0.083 Sum_probs=46.6
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+.. .+.+... .+.......+.+ .+||+|++-+...+.
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~-------~~~dlii~D~~l~~~--- 60 (127)
T 3i42_A 3 LQQALIVEDYQAA--------AETFKELLEMLGFQADYV----MSGTDALHAMST-------RGYDAVFIDLNLPDT--- 60 (127)
T ss_dssp CEEEEEECSCHHH--------HHHHHHHHHHTTEEEEEE----SSHHHHHHHHHH-------SCCSEEEEESBCSSS---
T ss_pred cceEEEEcCCHHH--------HHHHHHHHHHcCCCEEEE----CCHHHHHHHHHh-------cCCCEEEEeCCCCCC---
Confidence 4589999988553 2234443432 2333221 123344444433 468999998866553
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhh--cCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSL--SCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~--~~~~~vi~~~~~p 125 (256)
+ -.++++.+++. .+...|++++...
T Consensus 61 -----------~-----g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 61 -----------S-----GLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp -----------B-----HHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred -----------C-----HHHHHHHHHhhhccCCCCEEEEECCc
Confidence 1 13566667776 5788999887654
No 83
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=41.44 E-value=72 Score=20.82 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=27.3
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 69 PSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 69 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
||+|++-+...+. +-.++++.+++..+..+|++++...
T Consensus 47 ~dlvi~D~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (135)
T 3eqz_A 47 QDIIILDLMMPDM-------------------DGIEVIRHLAEHKSPASLILISGYD 84 (135)
T ss_dssp TEEEEEECCTTTT-------------------HHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCEEEEeCCCCCC-------------------CHHHHHHHHHhCCCCCCEEEEEecc
Confidence 9999998865543 1235667777777888999987654
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=41.36 E-value=89 Score=23.04 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|.-.. ...+...+.. .+.+. .. .+.......+.. ..||+|++-+..-+.
T Consensus 6 ~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~---~~~~~a~~~~~~-------~~~dlvllD~~l~~~-- 64 (233)
T 1ys7_A 6 TSPRVLVVDDDSDV--------LASLERGLRLSGFEVA-TA---VDGAEALRSATE-------NRPDAIVLDINMPVL-- 64 (233)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EE---SSHHHHHHHHHH-------SCCSEEEEESSCSSS--
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHhCCCEEE-EE---CCHHHHHHHHHh-------CCCCEEEEeCCCCCC--
Confidence 45689999998553 1223333321 23333 11 122333333332 468999998765442
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..+..+|++++...
T Consensus 65 ------------~g-----~~~~~~l~~~~~~~~ii~lt~~~ 89 (233)
T 1ys7_A 65 ------------DG-----VSVVTALRAMDNDVPVCVLSARS 89 (233)
T ss_dssp ------------CH-----HHHHHHHHHTTCCCCEEEEECCC
T ss_pred ------------CH-----HHHHHHHHhcCCCCCEEEEEcCC
Confidence 11 24566677766889999988654
No 85
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=41.10 E-value=66 Score=21.43 Aligned_cols=83 Identities=10% Similarity=0.101 Sum_probs=42.5
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc--cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR--KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
...+|+++.|+-.. ...+.+.+.. .+.++... .+.......+.+ ..||+|++-+...+.
T Consensus 8 ~~~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~---~~~~~al~~l~~-------~~~dlvi~d~~l~~~- 68 (143)
T 2qv0_A 8 EKMKVIIVEDEFLA--------QQELSWLINTHSQMEIVGSF---DDGLDVLKFLQH-------NKVDAIFLDINIPSL- 68 (143)
T ss_dssp --CEEEEECSCHHH--------HHHHHHHHHHHSCCEEEEEE---SCHHHHHHHHHH-------CCCSEEEECSSCSSS-
T ss_pred CceEEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEe---CCHHHHHHHHHh-------CCCCEEEEecCCCCC-
Confidence 34679999988553 1223333332 23222222 122333343332 358999997765442
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
+ -.++++.+++..+...|++++..
T Consensus 69 -------------~-----g~~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 69 -------------D-----GVLLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp -------------C-----HHHHHHHHTTSTTCCEEEEEESC
T ss_pred -------------C-----HHHHHHHHHccCCCceEEEEeCC
Confidence 1 12455666666566777777654
No 86
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=41.10 E-value=1.5e+02 Score=24.53 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCCchHHHHHHhhhhCCC-CCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 46 YGWNSRRALQVLDQVFPK-DAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 46 ~G~~s~~~~~~~~~~~~~-~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
.|.+...++..+++.+.. ....+||+|++.+|. |......- .....+.+.|.. +.+.+++. +.+++++.
T Consensus 225 ~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~-Da~~~DpL-g~l~Lt~~g~~~----~~~~l~~~--~~p~v~v~ 294 (376)
T 4a69_A 225 DGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGA-DSLGCDRL-GCFNLSIRGHGE----CVEYVKSF--NIPLLVLG 294 (376)
T ss_dssp TTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCG-GGBTTCSS-CCCBBCHHHHHH----HHHHHHTT--CCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcc-cCCCCCcc-cCeecCHHHHHH----HHHHHHHc--CCCEEEEE
Confidence 344555555555443321 124689999999997 44332211 124455565544 45556664 35565554
No 87
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=41.10 E-value=58 Score=26.00 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|+|..|..= .++.+. +.+..| ++.+...+.+..|++.+++++.|
T Consensus 68 ~~aDvVvitAG~pr---------kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP 120 (294)
T 2x0j_A 68 KGSEIIVVTAGLAR---------KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCC---------CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEEecCCCC---------CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 35689999888432 233334 334444 56777788888899988887766
No 88
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.07 E-value=41 Score=24.08 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|.-.. ...+...+.. .+.+. ... +.......+. ...||+|++-+...+.
T Consensus 6 ~~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~-------~~~~dlvl~D~~lp~~-- 64 (184)
T 3rqi_A 6 SDKNFLVIDDNEVF--------AGTLARGLERRGYAVR-QAH---NKDEALKLAG-------AEKFEFITVXLHLGND-- 64 (184)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EEC---SHHHHHHHHT-------TSCCSEEEECSEETTE--
T ss_pred CCCeEEEEcCCHHH--------HHHHHHHHHHCCCEEE-EeC---CHHHHHHHHh-------hCCCCEEEEeccCCCc--
Confidence 35689999998553 1223333332 23332 111 2233333322 3579999997655442
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
+. .++++.+++..+..+||+++....
T Consensus 65 ------------~g-----~~~~~~l~~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 65 ------------SG-----LSLIAPLCDLQPDARILVLTGYAS 90 (184)
T ss_dssp ------------ES-----HHHHHHHHHHCTTCEEEEEESSCC
T ss_pred ------------cH-----HHHHHHHHhcCCCCCEEEEeCCCC
Confidence 11 245556666678899999987653
No 89
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=40.02 E-value=47 Score=21.85 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
.+||+|++.+...+. + -.++++.+++..+..+|++++...
T Consensus 45 ~~~dlii~d~~l~~~--------------~-----g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGV--------------N-----GIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HCCSEEEEETTCSSS--------------C-----HHHHHHHHHHTTCCSEEEEEECC-
T ss_pred cCCCEEEEecCCCCC--------------C-----hHHHHHHHHhcCCCCeEEEEeCCC
Confidence 368999998866553 1 134666677777889999987654
No 90
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.54 E-value=86 Score=21.13 Aligned_cols=19 Identities=5% Similarity=0.279 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 025181 95 LPEYVENMRRIATHLKSLS 113 (256)
Q Consensus 95 ~~~~~~~l~~li~~i~~~~ 113 (256)
++.+.+.++.+++..|+..
T Consensus 94 lea~ekalkemirqarkfa 112 (170)
T 4hhu_A 94 LEALEKALKEMIRQARKFA 112 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 6999999999999999874
No 91
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.54 E-value=86 Score=21.13 Aligned_cols=19 Identities=5% Similarity=0.279 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 025181 95 LPEYVENMRRIATHLKSLS 113 (256)
Q Consensus 95 ~~~~~~~l~~li~~i~~~~ 113 (256)
++.+.+.++.+++..|+..
T Consensus 13 lea~ekalkemirqarkfa 31 (170)
T 4hhu_A 13 LEALEKALKEMIRQARKFA 31 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5999999999999999874
No 92
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=38.75 E-value=27 Score=28.60 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 101 NMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 101 ~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
.+...++.+++..++..+|++...-.-..... .......+.+..+.++.+|++++|++|=+...
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~---------~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl 205 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA---------TKERHEQIAEISRELKTLARELEIPIIALVQL 205 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH---------HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHHhcCCCC---------CCChHHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence 44444444544445788888876543211110 00112236678888999999999999966554
No 93
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=37.73 E-value=47 Score=24.71 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=38.5
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-ccc--EeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KAD--ILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~--v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
+-.|+.+||.+..|-. .+.-...|++.+.+ ... +...++-++....+.+.+.+.+. ....|+|+...|+
T Consensus 5 rv~IIttGdEl~~G~i-~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~---~~~~DlVitTGGt 76 (195)
T 1di6_A 5 RIGLVSISDRASSGVY-QDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVD---EMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCeE-EchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 3358889999986432 23333445544432 233 34566677777777777776652 1367999988875
No 94
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=36.84 E-value=38 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- + -....+.+..| +..+.+.+.+..|++.+++++.|
T Consensus 75 ~~aDiVvi~ag~~~k--p------G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP 127 (326)
T 3vku_A 75 KDADLVVITAGAPQK--P------GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp TTCSEEEECCCCC------------------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred cCCCEEEECCCCCCC--C------CchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence 356999999886421 1 11122334444 67888888888899988888765
No 95
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=36.71 E-value=58 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhH-HHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPE-YVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~-~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++..|..-- ++.+..+ +..+ +.++++.+.+..|++.|++++.|.
T Consensus 73 ~~aDvVii~~g~p~k---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (318)
T 1y6j_A 73 KDCDVIVVTAGANRK---------PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 126 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH
T ss_pred CCCCEEEEcCCCCCC---------CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 356999999986421 1222222 2333 677788888878999998876553
No 96
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=36.56 E-value=70 Score=21.73 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=48.5
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|+-.. ...+.+.+.. .+.+.. . .+.......+.+ ..||+|++-+...+.
T Consensus 13 ~~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~~-------~~~dlvi~D~~l~~~-- 71 (153)
T 3hv2_A 13 RRPEILLVDSQEVI--------LQRLQQLLSPLPYTLHF-A---RDATQALQLLAS-------REVDLVISAAHLPQM-- 71 (153)
T ss_dssp SCCEEEEECSCHHH--------HHHHHHHHTTSSCEEEE-E---SSHHHHHHHHHH-------SCCSEEEEESCCSSS--
T ss_pred CCceEEEECCCHHH--------HHHHHHHhcccCcEEEE-E---CCHHHHHHHHHc-------CCCCEEEEeCCCCcC--
Confidence 45689999988553 2234444442 233321 1 122334444432 468999998865543
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
+ -.++++.+++..+...||+++....
T Consensus 72 ------------~-----g~~~~~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 72 ------------D-----GPTLLARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp ------------C-----HHHHHHHHHHHCTTSEEEEECCCCC
T ss_pred ------------c-----HHHHHHHHHhHCCCCeEEEEECCCC
Confidence 1 1345566666778899999887653
No 97
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=36.21 E-value=67 Score=25.75 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhH-HH---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPE-YV---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~-~~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|..-- ++.+... .. .-++.+++.+.+..|++.+++++.|
T Consensus 66 ~~aD~Vii~ag~~~~---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 118 (310)
T 2xxj_A 66 EGARAVVLAAGVAQR---------PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNP 118 (310)
T ss_dssp TTEEEEEECCCCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEECCCCCCC---------CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 356999999986421 2222222 33 3367777888888899999887655
No 98
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=36.14 E-value=25 Score=29.10 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEE
Q 025181 47 GWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFL 121 (256)
Q Consensus 47 G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~ 121 (256)
|.+...++..+++.++.....+||+|++..|. |......- .....+.+.|.. +.+.+++.. .+++++
T Consensus 270 g~~d~~yl~~~~~~l~~l~~f~PdlIvvsaG~-Da~~~Dpl-g~l~lt~~~~~~----~~~~l~~~~--~~~v~v 336 (362)
T 3men_A 270 GSSEAAFFERVDDALRELRRFAPDALVLSLGF-DVYRDDPQ-SQVAVTTDGFGR----LGHLIGALR--LPTVIV 336 (362)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHCCSEEEEEECS-TTBTTCTT-CCBCBCHHHHHH----HHHHHHTTC--CCEEEE
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcc-cCcCCCCC-CCccCCHHHHHH----HHHHHHhhC--CCEEEE
Confidence 44444555555544433235689999999997 44332211 123344555544 566666653 344444
No 99
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=36.04 E-value=77 Score=25.55 Aligned_cols=49 Identities=6% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHH-HHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEY-VEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~-~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+|++..|.+-- +..+..++ ..| +..+++.+++.. |++.+++++.|
T Consensus 82 ~~aD~Vi~~ag~~~~---------~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 82 KDADVALLVGARPRG---------PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp TTCSEEEECCCCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 356999999886542 22233333 333 667888888885 88889888854
No 100
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=35.87 E-value=35 Score=27.97 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc
Q 025181 47 GWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS 113 (256)
Q Consensus 47 G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~ 113 (256)
|.+...++..+++.++.....+||+|++..|. |......- .....+.+.|.. +.+.+++..
T Consensus 252 g~~d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~-D~~~~Dpl-g~~~lt~~~~~~----~~~~l~~~~ 312 (341)
T 3q9b_A 252 GTPYSVWGEALTDSLKRIAAFGAEAIVVSLGV-DTFEQDPI-SFFKLTSPDYIT----MGRTIAASG 312 (341)
T ss_dssp TCBHHHHHHHHHHHHHHHHHHTCSCEEEEECC-TTBTTCTT-CCCBBCTTHHHH----HHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCCCCC-CCccCCHHHHHH----HHHHHHHhC
Confidence 34444555555444433235689999999997 44332211 124455566554 555556653
No 101
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=35.46 E-value=96 Score=20.50 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=44.9
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
..+|+++.|+-.. ...+.+.+...+.+.. . .+.......+.+ .+||+|++-+...+.
T Consensus 3 ~~~iLivdd~~~~--------~~~l~~~l~~~~~v~~-~---~~~~~a~~~~~~-------~~~dlvi~D~~l~~~---- 59 (140)
T 3n53_A 3 LKKILIIDQQDFS--------RIELKNFLDSEYLVIE-S---KNEKEALEQIDH-------HHPDLVILDMDIIGE---- 59 (140)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTTSEEEE-E---SSHHHHHHHHHH-------HCCSEEEEETTC-------
T ss_pred CCEEEEEeCCHHH--------HHHHHHHHHhcceEEE-e---CCHHHHHHHHhc-------CCCCEEEEeCCCCCC----
Confidence 4689999888543 2235555543322321 1 123444444433 368999998765442
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLS--CATRIIFLSTPP 125 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p 125 (256)
+-..+++.+++.. +...||+++...
T Consensus 60 ---------------~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 60 ---------------NSPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp ------------------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred ---------------cHHHHHHHHHcCcccCCCCEEEEecCC
Confidence 1124556666665 788888887754
No 102
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=35.39 E-value=77 Score=21.04 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=45.7
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+.. .+.+.. . .+.......+. ...||+|++-+ ..+.
T Consensus 4 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~-------~~~~dlvi~d~-~~~~--- 60 (142)
T 2qxy_A 4 TPTVMVVDESRIT--------FLAVKNALEKDGFNVIW-A---KNEQEAFTFLR-------REKIDLVFVDV-FEGE--- 60 (142)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHGGGTCEEEE-E---SSHHHHHHHHT-------TSCCSEEEEEC-TTTH---
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhCCCEEEE-E---CCHHHHHHHHh-------ccCCCEEEEeC-CCCC---
Confidence 4589999988543 2234444432 233331 1 12233333332 24789999987 5432
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+-.++++.+++..+...||+++...
T Consensus 61 ----------------~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 61 ----------------ESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp ----------------HHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred ----------------cHHHHHHHHHHHCCCCCEEEEECCC
Confidence 1235666777777889999887654
No 103
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=35.29 E-value=63 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCeEE--echhHhhcccccccccccccccCChhH
Q 025181 150 QKYSDACINLCHELGVKVV--DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 150 ~~~n~~l~~~~~~~~v~~v--D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
.+..+.++++|++++++++ |-.+..... -.||+|..+.-
T Consensus 55 ~~~a~~l~~l~~~~~v~liIND~~dlA~~~-------gAdGVHLgq~d 95 (540)
T 3nl6_A 55 IEEALQIKELCHAHNVPLIINDRIDVAMAI-------GADGIHVGQDD 95 (540)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCSHHHHHT-------TCSEEEECTTS
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcHHHHHHc-------CCCEEEEChhh
Confidence 4556677889999998876 322322222 26899987643
No 104
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=34.78 E-value=87 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-- ++. ..+....+ +.++++.+.+..|++.+++++.|
T Consensus 66 ~~aD~Vi~~ag~~~k---------~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 118 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRK---------PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118 (308)
T ss_dssp TTCSEEEECCSCCCC---------SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEeCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 456999999886331 122 23334444 66777778887899998887654
No 105
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=34.27 E-value=62 Score=26.21 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHH-H---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEY-V---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~-~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
..|+||+..|..-- ++.+...+ . .-++.+++.+.+..|++.|++++.|
T Consensus 76 ~aDvVii~ag~~~k---------~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 127 (326)
T 2zqz_A 76 DADLVVITAGAPQK---------PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp GCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred CCCEEEEcCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 45999999986421 22223332 2 3466777778888899999987555
No 106
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=34.04 E-value=1.1e+02 Score=24.71 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCc-eEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCAT-RIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~-~vi~~~~~ 124 (256)
...|+|++..|...- .+ ....+.+. .-++.+++.+++..|+. .+++++.|
T Consensus 78 ~daDvVvitAg~prk-----pG---~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 78 KDLDVAILVGSMPRR-----DG---MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp TTCSEEEECCSCCCC-----TT---CCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCC-----CC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 356999998775431 11 12233344 44677888888888876 57777655
No 107
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.99 E-value=55 Score=22.32 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=27.3
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...||+|++.+...+. +. .++++.+++..+...||+++...
T Consensus 45 ~~~~dliild~~l~~~--------------~g-----~~~~~~l~~~~~~~pii~ls~~~ 85 (155)
T 1qkk_A 45 ADFAGIVISDIRMPGM--------------DG-----LALFRKILALDPDLPMILVTGHG 85 (155)
T ss_dssp TTCCSEEEEESCCSSS--------------CH-----HHHHHHHHHHCTTSCEEEEECGG
T ss_pred hCCCCEEEEeCCCCCC--------------CH-----HHHHHHHHhhCCCCCEEEEECCC
Confidence 3568999998765442 11 24556666666888999887654
No 108
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=33.55 E-value=88 Score=20.90 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+...+. +. .++++.+++..|...|++++...
T Consensus 48 ~~~dlvllD~~lp~~--------------~g-----~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRM--------------DG-----IELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp SCCSEEEEESCCSSS--------------CH-----HHHHHHHHHHCTTCEEEEECCST
T ss_pred CCCCEEEEeCCCCCC--------------CH-----HHHHHHHHhhCCCCcEEEEeCCC
Confidence 468999998765443 11 24555566666888999987654
No 109
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=33.19 E-value=47 Score=26.76 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHH---HHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYV---ENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~---~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++..|..-- ++.+. +.+. .-+..+.+.+.+..|++.|++++.|.
T Consensus 73 ~~aDvVvi~ag~~~~---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (317)
T 3d0o_A 73 HDADLVVICAGAAQK---------PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV 126 (317)
T ss_dssp TTCSEEEECCCCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred CCCCEEEECCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 356999999986321 12222 2222 34667777778888999999977553
No 110
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=32.17 E-value=42 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCeEE--echhHhhcccccccccccccccCChh
Q 025181 149 CQKYSDACINLCHELGVKVV--DLFTAIQKRDDWKNACFTDGIHLSEE 194 (256)
Q Consensus 149 ~~~~n~~l~~~~~~~~v~~v--D~~~~~~~~~~~~~~~~~Dg~Hp~~~ 194 (256)
..+..+.++++|++++++++ |-.+..... -.||+|+...
T Consensus 81 ~~~~a~~l~~l~~~~~~~liInd~~~lA~~~-------gAdGVHLg~~ 121 (243)
T 3o63_A 81 ELAACEILADAAHRYGALFAVNDRADIARAA-------GADVLHLGQR 121 (243)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCHHHHHHH-------TCSEEEECTT
T ss_pred HHHHHHHHHHHHHhhCCEEEEeCHHHHHHHh-------CCCEEEecCC
Confidence 34456778899999998766 333332221 2588888754
No 111
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=32.15 E-value=93 Score=24.74 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhH-HHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPE-YVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~-~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|.... +..+... +.. -++.+++.+++..|++.|++.+.|
T Consensus 69 ~~aDvVi~~ag~~~~---------~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP 121 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQ---------PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (303)
T ss_dssp TTCSEEEECCCCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred CCCCEEEEcCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 457999999986432 2222222 333 356677777887788888776554
No 112
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=32.05 E-value=1.1e+02 Score=20.09 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC-CCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN-DSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N-D~~ 82 (256)
...+|+++.|+-.. ...+...+.. .+.+..... +.......+.+ ..||+|++-+... +.
T Consensus 8 ~~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~~~---~~~~a~~~~~~-------~~~dlii~d~~~~~~~- 68 (140)
T 3cg0_A 8 DLPGVLIVEDGRLA--------AATLRIQLESLGYDVLGVFD---NGEEAVRCAPD-------LRPDIALVDIMLCGAL- 68 (140)
T ss_dssp CCCEEEEECCBHHH--------HHHHHHHHHHHTCEEEEEES---SHHHHHHHHHH-------HCCSEEEEESSCCSSS-
T ss_pred CCceEEEEECCHHH--------HHHHHHHHHHCCCeeEEEEC---CHHHHHHHHHh-------CCCCEEEEecCCCCCC-
Confidence 45689999998553 1223333321 233332111 22334444433 3589999987653 32
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++. +..+||+++...
T Consensus 69 -------------~g-----~~~~~~l~~~-~~~~ii~ls~~~ 92 (140)
T 3cg0_A 69 -------------DG-----VETAARLAAG-CNLPIIFITSSQ 92 (140)
T ss_dssp -------------CH-----HHHHHHHHHH-SCCCEEEEECCC
T ss_pred -------------CH-----HHHHHHHHhC-CCCCEEEEecCC
Confidence 11 2345555555 778888887654
No 113
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.52 E-value=80 Score=20.52 Aligned_cols=83 Identities=8% Similarity=0.027 Sum_probs=45.2
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC-CCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND-SMG 83 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND-~~~ 83 (256)
..+|+++.|.-.. ...+...+.. .+.+.. . .+.......+.+. ..||+|++-+...+ .
T Consensus 5 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~~~------~~~dlvi~d~~l~~~~-- 64 (132)
T 2rdm_A 5 AVTILLADDEAIL--------LLDFESTLTDAGFLVTA-V---SSGAKAIEMLKSG------AAIDGVVTDIRFCQPP-- 64 (132)
T ss_dssp SCEEEEECSSHHH--------HHHHHHHHHHTTCEEEE-E---SSHHHHHHHHHTT------CCCCEEEEESCCSSSS--
T ss_pred CceEEEEcCcHHH--------HHHHHHHHHHcCCEEEE-E---CCHHHHHHHHHcC------CCCCEEEEeeeCCCCC--
Confidence 4689999888543 1233333331 233332 1 1223334333321 26899999876543 2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..+...|++++...
T Consensus 65 ------------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 65 ------------DG-----WQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp ------------CH-----HHHHHHHHHHCTTCCEEEEESSC
T ss_pred ------------CH-----HHHHHHHHhcCCCCCEEEEeCCc
Confidence 11 23566666666788999887654
No 114
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.02 E-value=46 Score=22.95 Aligned_cols=85 Identities=11% Similarity=0.136 Sum_probs=47.2
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+.. .+.+.... .+.......+.+.- ..||+|++-+...+.
T Consensus 36 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~---~~~~~al~~l~~~~-----~~~dliilD~~l~~~--- 96 (157)
T 3hzh_A 36 PFNVLIVDDSVFT--------VKQLTQIFTSEGFNIIDTA---ADGEEAVIKYKNHY-----PNIDIVTLXITMPKM--- 96 (157)
T ss_dssp ECEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHHG-----GGCCEEEECSSCSSS---
T ss_pred ceEEEEEeCCHHH--------HHHHHHHHHhCCCeEEEEE---CCHHHHHHHHHhcC-----CCCCEEEEeccCCCc---
Confidence 4578888887543 2234443332 23333122 12344444444321 257999997765553
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+ -..+++.+++..+...||+++...
T Consensus 97 -----------~-----g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 97 -----------D-----GITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp -----------C-----HHHHHHHHHHHCTTCCEEEEESCC
T ss_pred -----------c-----HHHHHHHHHhhCCCCcEEEEeccC
Confidence 1 135666677777889999987654
No 115
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=30.55 E-value=51 Score=26.98 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCce-EEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATR-IIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~-vi~~~~~ 124 (256)
..|+||+..|..-- ++. ..+.+..| ++.+++.+.+..|++. +++++.|
T Consensus 76 dADvVvitaG~p~k---------pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNP 128 (343)
T 3fi9_A 76 DAKYIVSSGGAPRK---------EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128 (343)
T ss_dssp TEEEEEECCC----------------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSS
T ss_pred CCCEEEEccCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCc
Confidence 46999999886321 222 23334444 6777888888889986 6666654
No 116
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.46 E-value=1.1e+02 Score=19.54 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=41.8
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC-CCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN-DSMGP 84 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N-D~~~~ 84 (256)
.+|+++.|+-.. ...+.+.+.. .+.+.. . .+.......+.+ ..||+|++-+... +.
T Consensus 6 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~~~~-------~~~dlvi~d~~~~~~~--- 63 (127)
T 2gkg_A 6 KKILIVESDTAL--------SATLRSALEGRGFTVDE-T---TDGKGSVEQIRR-------DRPDLVVLAVDLSAGQ--- 63 (127)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHHTCEEEE-E---CCHHHHHHHHHH-------HCCSEEEEESBCGGGC---
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHhcCceEEE-e---cCHHHHHHHHHh-------cCCCEEEEeCCCCCCC---
Confidence 589999988543 1223333321 233321 1 123444444433 3589999987654 42
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhh--cCCceEEEE
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSL--SCATRIIFL 121 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~--~~~~~vi~~ 121 (256)
+. .++++.+++. .+..+|+++
T Consensus 64 -----------~g-----~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 64 -----------NG-----YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp -----------BH-----HHHHHHHHHSTTTTTSCEEEE
T ss_pred -----------CH-----HHHHHHHhcCccccCCCEEEE
Confidence 11 2456666665 477888887
No 117
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=30.44 E-value=1.1e+02 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|...... ....+-+.. -+..+++.+++..|+..|++.+.|
T Consensus 75 ~gaDvVi~~ag~~~~~g--------~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNP 127 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPG--------MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 127 (326)
T ss_dssp TTCSEEEECCCCCCCSS--------CCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred CCCCEEEEcCCcCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCc
Confidence 35699999998654211 111233333 466777777887788877776544
No 118
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=29.35 E-value=1.2e+02 Score=24.28 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|..-.. + ....+.+.. -+.++++.+.+..|++.+++++.|
T Consensus 73 ~~aDvViia~~~~~~~-----g---~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNP 125 (316)
T 1ldn_A 73 RDADLVVICAGANQKP-----G---ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125 (316)
T ss_dssp TTCSEEEECCSCCCCT-----T---TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred CCCCEEEEcCCCCCCC-----C---CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 3569999999864321 1 111233333 356677777787888888777554
No 119
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=29.27 E-value=1.2e+02 Score=24.79 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhH-HHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPE-YVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~-~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+|||..|..- .++.+.++ +..| ++.+...+.+.. |++.|++++.|
T Consensus 99 ~~advVvi~aG~pr---------kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 99 DGVAIAIMCGAFPR---------KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp TTCSEEEECCCCCC---------CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEECCCCCC---------CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 35688888877532 23444444 4444 556666666654 77888887766
No 120
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=29.12 E-value=1e+02 Score=19.93 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
.+||+|++-+...+. +. .++++.+++..+..+|++++...
T Consensus 46 ~~~dlvi~D~~l~~~--------------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDM--------------SG-----VELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp CCSEEEEEECCSTTS--------------CH-----HHHHHHHHHTTCCCCEEEEECTT
T ss_pred CCCCEEEEECCCCCC--------------CH-----HHHHHHHHhcCCCCCEEEEECCC
Confidence 468999998765442 11 24455666666788898887654
No 121
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=27.77 E-value=1.1e+02 Score=19.68 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=44.6
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
.+|+++.|+-.. ...+...+.. .+.+. .. .+.......+.+ .+||+|++-+...+.
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~l~~~~~~v~-~~---~~~~~a~~~~~~-------~~~dlvl~D~~l~~~---- 60 (124)
T 1srr_A 4 EKILIVDDQSGI--------RILLNEVFNKEGYQTF-QA---ANGLQALDIVTK-------ERPDLVLLDMKIPGM---- 60 (124)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHTTTCEEE-EE---SSHHHHHHHHHH-------HCCSEEEEESCCTTC----
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHHCCcEEE-Ee---CCHHHHHHHHhc-------cCCCEEEEecCCCCC----
Confidence 479999988543 2234444432 23332 11 122334444432 368999998765442
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..+..+|++++...
T Consensus 61 ----------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 61 ----------DG-----IEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp ----------CH-----HHHHHHHHHHCTTCEEEEEESSC
T ss_pred ----------CH-----HHHHHHHHHhCCCCCEEEEEccC
Confidence 11 23455566666888999887654
No 122
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=27.74 E-value=84 Score=20.66 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+||+|++-+...+. +. .++++.+++..+..+|++++...
T Consensus 49 ~~dlvilD~~lp~~--------------~g-----~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 49 NPNVVILDIEMPGM--------------TG-----LEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp CCSEEEECSSCSSS--------------CH-----HHHHHHHHHTTCSCEEEEEESCC
T ss_pred CCCEEEEecCCCCC--------------CH-----HHHHHHHHHHCCCCcEEEEecCC
Confidence 58999987655442 11 24556666666888999987654
No 123
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=27.48 E-value=1e+02 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=29.9
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhh-cCCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSL-SCATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~-~~~~~vi~~~~~ 124 (256)
..|+|||..|..- .++.+. +-+..| ++.+...+.+. .|++.|++++.|
T Consensus 108 daDvVVitag~pr---------kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 108 DVDWALLIGAKPR---------GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp TCSEEEECCCCCC---------CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCEEEEcCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 4588888777432 123333 344444 55666667776 589888888866
No 124
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=27.13 E-value=86 Score=20.97 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc--cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR--KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
..++|+++.|+-.. ...+.+.+.. .+.+..... +.......+.+. ..||+|++-+...+.
T Consensus 12 ~~~~vlivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~------~~~dlvilD~~l~~~- 73 (145)
T 3kyj_B 12 SPYNVMIVDDAAMM--------RLYIASFIKTLPDFKVVAQAA---NGQEALDKLAAQ------PNVDLILLDIEMPVM- 73 (145)
T ss_dssp CSEEEEEECSCHHH--------HHHHHHHHTTCTTEEEEEEES---SHHHHHHHHHHC------TTCCEEEECTTSCCC-
T ss_pred CCCeEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEEC---CHHHHHHHHhcC------CCCCEEEEeCCCCCC-
Confidence 56789999988553 2345555543 222221221 223334434331 268999997765442
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
++ ..+++.+++..+ ..+++++.
T Consensus 74 ----~g--------------~~~~~~lr~~~~-~~iiil~~ 95 (145)
T 3kyj_B 74 ----DG--------------MEFLRHAKLKTR-AKICMLSS 95 (145)
T ss_dssp ----TT--------------CHHHHHHHHHCC-CEEC-CBS
T ss_pred ----CH--------------HHHHHHHHhcCC-CCeEEEEE
Confidence 10 134455565544 67777765
No 125
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=26.56 E-value=97 Score=19.67 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=44.6
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
.+|+++.|+-.. ...+.+.+. ..+.+..... +.......+.+ .+||+|++-+...+.
T Consensus 3 ~~ilivdd~~~~--------~~~l~~~l~~~g~~vv~~~~---~~~~a~~~~~~-------~~~dlil~D~~l~~~---- 60 (120)
T 1tmy_A 3 KRVLIVDDAAFM--------RMMLKDIITKAGYEVAGEAT---NGREAVEKYKE-------LKPDIVTMDITMPEM---- 60 (120)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEES---SHHHHHHHHHH-------HCCSEEEEECSCGGG----
T ss_pred ceEEEEcCcHHH--------HHHHHHHHhhcCcEEEEEEC---CHHHHHHHHHh-------cCCCEEEEeCCCCCC----
Confidence 478899887543 223333333 1233222221 22334444433 358999998765442
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..|..++++++...
T Consensus 61 ----------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 61 ----------NG-----IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp ----------CH-----HHHHHHHHHHCTTCCEEEEECTT
T ss_pred ----------cH-----HHHHHHHHhhCCCCeEEEEeCCC
Confidence 11 24556666666788898887654
No 126
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=26.52 E-value=1.1e+02 Score=22.79 Aligned_cols=57 Identities=7% Similarity=0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCeEEechhHhhccccccccccccc--ccCChhHHHHHHHHHHHHHHhc
Q 025181 154 DACINLCHELGVKVVDLFTAIQKRDDWKNACFTDG--IHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 154 ~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg--~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
+.+.++..+.|+..+|.+..+.-..+....++.|. +...+...+.+++.++..|.+.
T Consensus 7 ~~~a~~l~~~gai~~~~h~~f~l~sG~~S~~~~D~~~l~~~~~~~~~~~~~la~~i~~~ 65 (211)
T 2aee_A 7 SQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKAH 65 (211)
T ss_dssp HHHHHHHHHTTSEEECTTSCEECGGGCEESEEECGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCeEeCCCCcCCeEEeChhhcCCHHHHHHHHHHHHHHHHhh
Confidence 34556667778888887666553333333456676 8888999999999998888753
No 127
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=26.08 E-value=1.4e+02 Score=23.67 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHH---HHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEY---VENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~---~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++..|..-. ++. ..+-+ ..-++.+.+.+.+..|+..+++++.|.
T Consensus 68 ~~aDvViiav~~p~~---------~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~ 121 (310)
T 1guz_A 68 ANSDIVIITAGLPRK---------PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (310)
T ss_dssp TTCSEEEECCSCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred CCCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 356999999985321 111 12222 234567777777777888888886654
No 128
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.99 E-value=78 Score=20.86 Aligned_cols=86 Identities=6% Similarity=-0.001 Sum_probs=44.3
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+.+.+.. .+.+... .+.......+.+ ..||+|++-+...+....
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~-------~~~dlvi~d~~~~~~~~~ 63 (140)
T 2qr3_A 3 LGTIIIVDDNKGV--------LTAVQLLLKNHFSKVITL----SSPVSLSTVLRE-------ENPEVVLLDMNFTSGINN 63 (140)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTTSSEEEEE----CCHHHHHHHHHH-------SCEEEEEEETTTTC----
T ss_pred CceEEEEeCCHHH--------HHHHHHHHHhCCcEEEEe----CCHHHHHHHHHc-------CCCCEEEEeCCcCCCCCC
Confidence 3589999888543 2234444432 2333211 122334444432 358999998765410000
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
. .+ -.++++.+++..+...||+++..
T Consensus 64 ~---------~~-----g~~~~~~l~~~~~~~~ii~ls~~ 89 (140)
T 2qr3_A 64 G---------NE-----GLFWLHEIKRQYRDLPVVLFTAY 89 (140)
T ss_dssp ----------CC-----HHHHHHHHHHHCTTCCEEEEEEG
T ss_pred C---------cc-----HHHHHHHHHhhCcCCCEEEEECC
Confidence 0 01 12455566666788899988643
No 129
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=24.75 E-value=1.5e+02 Score=19.43 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=48.1
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhcccc--EeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKAD--ILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~--v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
...+|+++.|+-.. ...+...+...-. .+... .+.......+.+... ....||+|++-+...+.
T Consensus 8 ~~~~iLivdd~~~~--------~~~l~~~l~~~~~~~~v~~~---~~~~~a~~~l~~~~~--~~~~~dlvi~D~~l~~~- 73 (146)
T 3ilh_A 8 KIDSVLLIDDDDIV--------NFLNTTIIRMTHRVEEIQSV---TSGNAAINKLNELYA--AGRWPSIICIDINMPGI- 73 (146)
T ss_dssp CEEEEEEECSCHHH--------HHHHHHHHHTTCCEEEEEEE---SSHHHHHHHHHHHHT--SSCCCSEEEEESSCSSS-
T ss_pred ccceEEEEeCCHHH--------HHHHHHHHHhcCCCeeeeec---CCHHHHHHHHHHhhc--cCCCCCEEEEcCCCCCC-
Confidence 34579999988543 2234444432211 11111 123444454444211 13578999998766553
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHh----hcCCceEEEEcCCC
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKS----LSCATRIIFLSTPP 125 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~----~~~~~~vi~~~~~p 125 (256)
+ -.++++.+++ ..+...||+++...
T Consensus 74 -------------~-----g~~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 74 -------------N-----GWELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp -------------C-----HHHHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred -------------C-----HHHHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 1 1245566666 45788888887654
No 130
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=24.49 E-value=2.8e+02 Score=22.39 Aligned_cols=67 Identities=7% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEE
Q 025181 51 RRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFL 121 (256)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~ 121 (256)
......++++..+. ...|.++++.++ |+....... ....+.+.+...++++++.+|+..|+..|++-
T Consensus 162 ~~~~~~~~~la~ry-k~~p~Vi~~el~-NEP~~~~~~--~~~~~~~~~~~~~~~~~~~IR~~dp~~~I~v~ 228 (359)
T 4hty_A 162 GETFDFWRRVSERY-NGINSVAFYEIF-NEPTVFNGR--LGIATWAEWKAINEEAITIIQAHNPKAIALVA 228 (359)
T ss_dssp HHHHHHHHHHHHHT-TTCTTEEEEESC-SEECCGGGT--TCCCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEEEec-cCCCCCCCC--cCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 34444444444332 356777777665 776432110 11234578889999999999999877655544
No 131
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.46 E-value=92 Score=19.64 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=25.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
.+||+|++-+...+. +. .++++.+++..+..++++++...
T Consensus 44 ~~~dlvl~D~~l~~~--------------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 44 GNYDLVILDIEMPGI--------------SG-----LEVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp SCCSEEEECSCCSSS--------------CH-----HHHHHHHHHHCTTCCEEEEESCG
T ss_pred CCCCEEEEECCCCCC--------------CH-----HHHHHHHHccCCCCeEEEEECCc
Confidence 368999997765442 11 24555666666788888887653
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.22 E-value=1.7e+02 Score=19.75 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
...+|+++.|+-.. ...+.+.+.. .+.+... .+.......+. ..+||+|++-+...+.
T Consensus 6 ~~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~al~~l~-------~~~~dlii~D~~l~~~-- 64 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ--------AEHLKHILEETGYQTEHV----RNGREAVRFLS-------LTRPDLIISDVLMPEM-- 64 (154)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEEE----SSHHHHHHHHT-------TCCCSEEEEESCCSSS--
T ss_pred CCCcEEEEeCCHHH--------HHHHHHHHHHCCCEEEEe----CCHHHHHHHHH-------hCCCCEEEEeCCCCCC--
Confidence 45789999998553 2234444432 2333221 12233333332 3579999998865553
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCC
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLS--CATRIIFLSTPP 125 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p 125 (256)
+ -.++++.+++.. +..+||+++...
T Consensus 65 ------------~-----g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 65 ------------D-----GYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp ------------C-----HHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred ------------C-----HHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 1 124555566542 678888887654
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=23.89 E-value=1.7e+02 Score=21.35 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
...|.+++.+-.+|. +.+...+..++..++...++..+++++.
T Consensus 97 ~~~d~~i~v~d~~~~--------------~s~~~~~~~~~~~i~~~~~~~piilv~n 139 (214)
T 3q3j_B 97 SDSDAVLLCFDISRP--------------ETVDSALKKWRTEILDYCPSTRVLLIGC 139 (214)
T ss_dssp TTCSEEEEEEETTCT--------------HHHHHHHTHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCeEEEEEEECcCH--------------HHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 356888888876663 5555556777777777767788888754
No 134
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.60 E-value=68 Score=21.76 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+...+. +-.++++.+++..+..+||+++...
T Consensus 49 ~~~dlvi~d~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 49 NTVDLILLDVNLPDA-------------------EAIDGLVRLKRFDPSNAVALISGET 88 (154)
T ss_dssp CCCSEEEECC-------------------------CHHHHHHHHHHCTTSEEEEC----
T ss_pred CCCCEEEEeCCCCCC-------------------chHHHHHHHHHhCCCCeEEEEeCCC
Confidence 468999997764432 1124556666667888998887554
No 135
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=23.19 E-value=1.1e+02 Score=22.04 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=40.3
Q ss_pred EEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 9 FVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
|+.+||.+.+ ..+.=...|++.+. ..+++...++-++....+...+.+.+. ....|+|+...|+
T Consensus 15 Ii~tGdE~g~---i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~---~~~~DlVittGG~ 79 (172)
T 1mkz_A 15 ILTVSNRRGE---EDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIA---SDDVQVVLITGGT 79 (172)
T ss_dssp EEEECSSCCG---GGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH---SSSCCEEEEESCC
T ss_pred EEEEeCCCCc---ccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEeCCCC
Confidence 7888999422 11222334444443 235677777888888888887777652 1247999888775
No 136
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.89 E-value=1.1e+02 Score=20.58 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=27.6
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
...||+|++-+...+. + -.++++.+++ ..+..+||+++...
T Consensus 57 ~~~~dliilD~~l~~~--------------~-----g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDM--------------T-----GIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSBCSSS--------------B-----HHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCC--------------c-----HHHHHHHHHhcccccCCCEEEEecCC
Confidence 3579999998765543 1 1345566666 45788898888654
No 137
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.79 E-value=1.8e+02 Score=19.50 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
.+.||+++=|+-.. ...+...+.. ++.+...+.+| ......+.+ .+||+|++-+.+-+
T Consensus 7 r~~rILiVdD~~~~--------~~~l~~~L~~~G~~v~~~a~~g---~eAl~~~~~-------~~~DlvllDi~mP~ 65 (123)
T 2lpm_A 7 RRLRVLVVEDESMI--------AMLIEDTLCELGHEVAATASRM---QEALDIARK-------GQFDIAIIDVNLDG 65 (123)
T ss_dssp CCCCEEEESSSTTT--------SHHHHHHHHHHCCCCCBCSCCH---HHHHHHHHH-------CCSSEEEECSSSSS
T ss_pred CCCEEEEEeCCHHH--------HHHHHHHHHHCCCEEEEEECCH---HHHHHHHHh-------CCCCEEEEecCCCC
Confidence 45689999998664 1123333321 23333222222 333444432 47999998554433
No 138
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=22.58 E-value=1.9e+02 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+.+|.-- ..+ ....+...+ -+.++++.+.+..|++.+++++.|
T Consensus 81 ~~aD~VI~avg~p~-----k~g---~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 133 (328)
T 2hjr_A 81 QNSDVVIITAGVPR-----KPN---MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNP 133 (328)
T ss_dssp TTCSEEEECCSCCC-----CTT---CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEcCCCCC-----CCC---CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 35699999998532 111 112233333 356677777777788888777654
No 139
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=22.43 E-value=2.3e+02 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+..+.+.++.+|+++++++|=+...
T Consensus 204 ~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 204 NQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 456778888999999999988866543
No 140
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.39 E-value=1.5e+02 Score=19.25 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+...+. +. .++++.+++..+...|++++...
T Consensus 46 ~~~dlvl~D~~l~~~--------------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKL--------------DG-----IEVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp HCCSEEEEESSCSSS--------------CH-----HHHHHHHHHTTCCCCEEEEECTT
T ss_pred cCCCEEEEecCCCCC--------------CH-----HHHHHHHHcCCCCCCEEEEECCC
Confidence 368999997765442 11 23566666666778888887654
No 141
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.19 E-value=1.3e+02 Score=21.53 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...||+|++-+...+. +. .++++.+++..+..+|++++...
T Consensus 46 ~~~~dlvl~D~~lp~~--------------~g-----~~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 46 PEQHGCLVLDMRMPGM--------------SG-----IELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp TTSCEEEEEESCCSSS--------------CH-----HHHHHHHHHTTCCCCEEEEESCT
T ss_pred ccCCCEEEEeCCCCCC--------------CH-----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 3578999997765442 11 24566677767889999987754
No 142
>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis}
Probab=21.99 E-value=3.8e+02 Score=23.02 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred cccccCChhHHHHHHHHHHHHHHhcc
Q 025181 186 TDGIHLSEEGSKIVVAEILKVLKQAE 211 (256)
Q Consensus 186 ~Dg~Hp~~~G~~~ia~~l~~~l~~~~ 211 (256)
..+.|.+++-.+.+.+.|.+.|++.+
T Consensus 197 ~es~~~t~~~~a~fik~L~p~l~~~g 222 (507)
T 3clw_A 197 QEGSFATKADLYRMVEELDKAISEAQ 222 (507)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 57899999999888899999999874
No 143
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=21.93 E-value=1.4e+02 Score=19.51 Aligned_cols=82 Identities=7% Similarity=0.050 Sum_probs=44.5
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
..+|+++.|+-.. ...+...+. ..+.+. ... +.......+.. ..||+|++-+...+.
T Consensus 3 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~~-------~~~dlvl~D~~l~~~--- 60 (132)
T 3crn_A 3 LKRILIVDDDTAI--------LDSTKQILEFEGYEVE-IAA---TAGEGLAKIEN-------EFFNLALFXIKLPDM--- 60 (132)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EES---SHHHHHHHHHH-------SCCSEEEECSBCSSS---
T ss_pred ccEEEEEeCCHHH--------HHHHHHHHHHCCceEE-EeC---CHHHHHHHHhc-------CCCCEEEEecCCCCC---
Confidence 3579999998553 122333332 123333 111 22333433332 368999997765442
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..+...+++++...
T Consensus 61 -----------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 61 -----------EG-----TELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp -----------BH-----HHHHHHHHHHCTTSEEEEEESCC
T ss_pred -----------ch-----HHHHHHHHhhCCCCcEEEEeccc
Confidence 11 23455566666788898887654
No 144
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=21.61 E-value=2.9e+02 Score=21.92 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 65 APIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 65 ~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
....||+|++..|..--..- |.....+.++..+.+.++++.+++.+|++.|++-+
T Consensus 180 A~agpDiI~~h~glT~gglI---G~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~g 234 (286)
T 2p10_A 180 AKAGADILVCHMGLTTGGAI---GARSGKSMDDCVSLINECIEAARTIRDDIIILSHG 234 (286)
T ss_dssp HHHTCSEEEEECSCC------------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEES
T ss_pred HHcCCCEEEECCCCCCCCcc---cCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 34578999999995422111 11234567777888999999999998887666555
No 145
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=21.42 E-value=1.4e+02 Score=21.74 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=28.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+..-+. +. .++++.+++..|..+|++++...
T Consensus 45 ~~~dlvllD~~l~~~--------------~g-----~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 45 EPFDVVILDIMLPVH--------------DG-----WEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp SCCSEEEEESCCSSS--------------CH-----HHHHHHHHHTTCCCCEEEEESSC
T ss_pred CCCCEEEEeCCCCCC--------------CH-----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 468999998765442 11 24666677777889999998765
No 146
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=21.36 E-value=2.6e+02 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..-+.++++.+++..|++-++..+.|-
T Consensus 136 i~v~~~i~~~i~~~~P~A~~in~tNP~ 162 (477)
T 3u95_A 136 VKLALEIAEKMKKMAPKAYLMQTANPV 162 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECSSCH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEecChH
Confidence 345678888999999999998888773
No 147
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.26 E-value=98 Score=20.58 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh--hcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKS--LSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~--~~~~~~vi~~~~~p 125 (256)
..||+|++-+...+. +-.++++.+++ ..+..+||+++...
T Consensus 50 ~~~dlii~D~~l~~~-------------------~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 50 AKYDLIILDIGLPIA-------------------NGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp CCCSEEEECTTCGGG-------------------CHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred CCCCEEEEeCCCCCC-------------------CHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 578999997654442 11356666776 45788999988654
No 148
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=21.24 E-value=1.4e+02 Score=18.87 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=25.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||++++-+..-+. +. .++++.+++..+...+++++...
T Consensus 43 ~~~dlil~D~~l~~~--------------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDE--------------DG-----LSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp SCCSEEEECSCCSSS--------------CH-----HHHHHHHHHTTCCSCEEEEESCC
T ss_pred cCCCEEEEecCCCCC--------------CH-----HHHHHHHHhcCCCCCEEEEecCC
Confidence 368999886654332 11 23556666666788888887654
No 149
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=21.14 E-value=1.8e+02 Score=23.45 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++.+|.---.-... .-....+.... -+.++++.+.+..|++.+++.+.|.
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~---~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~ 135 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPD---SEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL 135 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCG---GGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred CCCCEEEEccCCCCCCCccc---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCch
Confidence 35699999998632110000 00012333333 3677888888888888888776653
No 150
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=21.13 E-value=96 Score=24.72 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+.+|..-- ++.+ .+.... -+.++++.+.+..|++.|++.+.|
T Consensus 69 ~~aD~Vi~a~g~p~~---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 121 (309)
T 1ur5_A 69 ANSDVIVVTSGAPRK---------PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 121 (309)
T ss_dssp TTCSEEEECCCC-----------------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSS
T ss_pred CCCCEEEEcCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCc
Confidence 356999999986431 1111 222333 356677777777788888777654
No 151
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=21.03 E-value=2.4e+02 Score=20.44 Aligned_cols=57 Identities=4% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q 025181 98 YVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE 162 (256)
Q Consensus 98 ~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (256)
+.+.+.+++..+++. ...+|+++.= ++.... +...............|+.+...|.+
T Consensus 111 ~~~~~~~ll~~l~~~--~~~~vlVsNE-VG~GiV-----P~~~~~R~frD~~G~lnq~lA~~ad~ 167 (180)
T 1c9k_A 111 IDDEIQILIAACQRC--PAKVVLVTNE-VGMGIV-----PENRLARHFRDIAGRVNQRLAAAADE 167 (180)
T ss_dssp HHHHHHHHHHHHHHC--CSEEEEECCC-CCSSCC-----CSSHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHcc--CCCEEEEEcc-ccCCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence 566788888888884 4677777541 110000 00011114456677888888877754
No 152
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=20.93 E-value=1.5e+02 Score=19.44 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=44.5
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHP 86 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~ 86 (256)
++|+++.|+-.. ...+...+...+.+.. . .+.......+.. ..||+|++-+..-+.
T Consensus 2 ~~Ilivdd~~~~--------~~~l~~~l~~~~~v~~-~---~~~~~a~~~~~~-------~~~dlvl~D~~lp~~----- 57 (139)
T 2jk1_A 2 PAILLVDDEPHS--------LAAMKLALEDDFDVLT-A---QGAEAAIAILEE-------EWVQVIICDQRMPGR----- 57 (139)
T ss_dssp CEEEEECSSHHH--------HHHHHHHHTTTSCEEE-E---SSHHHHHHHHHH-------SCEEEEEEESCCSSS-----
T ss_pred CeEEEEcCCHHH--------HHHHHHHhhcCceEEE-c---CCHHHHHHHHhc-------CCCCEEEEeCCCCCC-----
Confidence 478888888543 2234444443333321 1 122333333332 358999997765442
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 87 SGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+. .++++.+++..+...+++++...
T Consensus 58 ---------~g-----~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 58 ---------TG-----VDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp ---------CH-----HHHHHHHHHHCTTSEEEEEESCT
T ss_pred ---------cH-----HHHHHHHHHhCCCCcEEEEeCCC
Confidence 11 24555666666788888887654
No 153
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=20.90 E-value=1.9e+02 Score=23.23 Aligned_cols=56 Identities=21% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+.+|.---. ...+.. ....+.... -+.++++.+.+..|++.+++++.|.
T Consensus 71 ~~aD~Vi~a~g~p~k~--g~~~qe-~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~ 129 (322)
T 1t2d_A 71 AGADVVIVTAGFTKAP--GKSDKE-WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV 129 (322)
T ss_dssp TTCSEEEECCSCSSCT--TCCSTT-CCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred CCCCEEEEeCCCCCCC--CCCccc-ccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 3569999999853210 000000 002233333 4667777777778988888876653
No 154
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=20.80 E-value=87 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
.+.|++|+.+|.|....... .......+. ..-.++|+.+.+.++++.||+.+.-|+
T Consensus 572 ~~ADvvVv~vG~~~~~e~Eg-~DR~~l~LP---~~Q~~LI~aV~a~~~~tVVVl~sG~pv 627 (845)
T 3abz_A 572 AKHDKAVLIIGLNGEWETEG-YDRENMDLP---KRTNELVRAVLKANPNTVIVNQSGTPV 627 (845)
T ss_dssp HTSSEEEEEEECCTTTSBTT-BCCSSSCCC---TTHHHHHHHHHHHCSCEEEEEECSSCC
T ss_pred hcCCEEEEEEecCCcccccc-CCcccccCC---HHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence 46799999999886432111 011222222 245677777778888877777777665
No 155
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.34 E-value=2.7e+02 Score=21.39 Aligned_cols=65 Identities=6% Similarity=-0.019 Sum_probs=41.5
Q ss_pred cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCc
Q 025181 37 KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCAT 116 (256)
Q Consensus 37 ~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~ 116 (256)
.+++...|.. .....+.....+ .+||+|.+++-.--. ...+.++++.+++..+++
T Consensus 151 G~~Vi~LG~~-vp~e~l~~~~~~-------~~~d~V~lS~l~~~~-----------------~~~~~~~i~~l~~~~~~~ 205 (258)
T 2i2x_B 151 GYNVVDLGRD-VPAEEVLAAVQK-------EKPIMLTGTALMTTT-----------------MYAFKEVNDMLLENGIKI 205 (258)
T ss_dssp TCEEEEEEEE-CCSHHHHHHHHH-------HCCSEEEEECCCTTT-----------------TTHHHHHHHHHHTTTCCC
T ss_pred CCEEEECCCC-CCHHHHHHHHHH-------cCCCEEEEEeeccCC-----------------HHHHHHHHHHHHhcCCCC
Confidence 4677777754 345444444443 478999888742211 236788888888887777
Q ss_pred eEEEEcCCCC
Q 025181 117 RIIFLSTPPV 126 (256)
Q Consensus 117 ~vi~~~~~p~ 126 (256)
+|++-+.+..
T Consensus 206 ~v~vGG~~~~ 215 (258)
T 2i2x_B 206 PFACGGGAVN 215 (258)
T ss_dssp CEEEESTTCC
T ss_pred cEEEECccCC
Confidence 7777666553
No 156
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=20.34 E-value=2.8e+02 Score=20.86 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
..+|+++.|+-... ......|.+ . .+.+. ...+| ......+.+ ..||+|++-+..-+.
T Consensus 129 ~~~ILivdd~~~~~----~~l~~~L~~-~--g~~v~-~a~~~---~eal~~l~~-------~~~dlvl~D~~mp~~---- 186 (254)
T 2ayx_A 129 DMMILVVDDHPINR----RLLADQLGS-L--GYQCK-TANDG---VDALNVLSK-------NHIDIVLSDVNMPNM---- 186 (254)
T ss_dssp CCEEEEEESSHHHH----HHHHHHHHH-H--TSEEE-EECCS---HHHHHHHHH-------SCCSEEEEEESSCSS----
T ss_pred CCEEEEEeCCHHHH----HHHHHHHHH-c--CCEEE-EECCH---HHHHHHHHh-------CCCCEEEEcCCCCCC----
Confidence 45799999986541 122223322 2 23333 22222 344444433 358999998866543
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
+. .++++.+++..+..+||+++....
T Consensus 187 ----------~G-----~~l~~~ir~~~~~~piI~lt~~~~ 212 (254)
T 2ayx_A 187 ----------DG-----YRLTQRIRQLGLTLPVIGVTANAL 212 (254)
T ss_dssp ----------CC-----HHHHHHHHHHHCCSCEEEEESSTT
T ss_pred ----------CH-----HHHHHHHHhcCCCCcEEEEECCCC
Confidence 11 134445555557788998887653
No 157
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=20.31 E-value=3.2e+02 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+.++.+.++.+|+++++++|=+...
T Consensus 333 ~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 333 NQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 456778888999999999998866553
No 158
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.29 E-value=1.5e+02 Score=18.34 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=43.9
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
++|+++.|+-.. ...+.+.+.. .+.+.... +.......+.+ ..||++++.+...+.
T Consensus 2 ~~iliv~~~~~~--------~~~l~~~l~~~g~~v~~~~----~~~~~~~~l~~-------~~~dlii~d~~~~~~---- 58 (119)
T 2j48_A 2 GHILLLEEEDEA--------ATVVCEMLTAAGFKVIWLV----DGSTALDQLDL-------LQPIVILMAWPPPDQ---- 58 (119)
T ss_dssp CEEEEECCCHHH--------HHHHHHHHHHTTCEEEEES----CHHHHHHHHHH-------HCCSEEEEECSTTCC----
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhCCcEEEEec----CHHHHHHHHHh-------cCCCEEEEecCCCCC----
Confidence 578899888543 1223333331 23333211 23444444433 358999988765442
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLS--CATRIIFLSTPP 125 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p 125 (256)
+ -..+++.+++.. +...+++++...
T Consensus 59 ----------~-----~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 59 ----------S-----CLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp ----------T-----HHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred ----------C-----HHHHHHHHHhccccCCCCEEEEeCCC
Confidence 1 124566666654 677888887654
No 159
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=20.20 E-value=1.8e+02 Score=18.69 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=24.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhh--cCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSL--SCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~--~~~~~vi~~~~~p 125 (256)
..||+|++-+..-+. +. .++++.+++. .+..+|++++...
T Consensus 50 ~~~dlvi~D~~~p~~--------------~g-----~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 50 ADTKVLITDWNMPEM--------------NG-----LDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp TTCCEEEECSCCSSS--------------CH-----HHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCCEEEEeCCCCCC--------------CH-----HHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 368998885543332 11 2455666653 3678888887654
Done!