BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025182
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNND
DAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLS
IRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIG
MAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQVHT
GELIFLTCSFITWSYC

High Scoring Gene Products

Symbol, full name Information P value
CCB4
AT1G59840 		protein from Arabidopsis thaliana 5.4e-79

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025182
        (256 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025896 - symbol:CCB4 "AT1G59840" species:3702...   794  5.4e-79   1


>TAIR|locus:2025896 [details] [associations]
            symbol:CCB4 "AT1G59840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0010190 "cytochrome b6f complex
            assembly" evidence=IMP] [GO:0010207 "photosystem II assembly"
            evidence=RCA] EMBL:CP002684 GO:GO:0009507 GO:GO:0010190
            EMBL:BT010443 EMBL:AK175262 EMBL:AK175368 EMBL:AK221539
            IPI:IPI00540642 RefSeq:NP_176193.2 RefSeq:NP_974051.1
            UniGene:At.36772 ProteinModelPortal:Q6NQK9 STRING:Q6NQK9
            PRIDE:Q6NQK9 ProMEX:Q6NQK9 EnsemblPlants:AT1G59840.1
            EnsemblPlants:AT1G59840.2 GeneID:842278 KEGG:ath:AT1G59840
            TAIR:At1g59840 InParanoid:Q6NQK9 OMA:NTQGVIC PhylomeDB:Q6NQK9
            ProtClustDB:CLSN2680766 Genevestigator:Q6NQK9 InterPro:IPR021325
            Pfam:PF11152 Uniprot:Q6NQK9
        Length = 297

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 166/240 (69%), Positives = 186/240 (77%)

Query:     1 MEAGTIFYSA-IPWKPKQXXXXXXXXXXXXIRASASSQSQGG--YRGPKPSQDLVADWVM 57
             MEA  I     IPW   +            IRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct:     1 MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query:    58 NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
              NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct:    61 KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query:   118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
             WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct:   121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query:   178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
             QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct:   181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       244   0.00098  113 3  11 22  0.42    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.80u 0.20s 20.00t   Elapsed:  00:00:01
  Total cpu time:  19.80u 0.20s 20.00t   Elapsed:  00:00:01
  Start:  Thu May  9 20:01:22 2013   End:  Thu May  9 20:01:23 2013

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