Query 025182
Match_columns 256
No_of_seqs 87 out of 89
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11152 DUF2930: Protein of u 100.0 1.2E-65 2.6E-70 449.9 16.6 169 66-250 1-173 (195)
2 TIGR02851 spore_V_T stage V sp 26.7 1.4E+02 0.0031 26.2 5.1 64 146-220 53-116 (180)
3 cd04683 Nudix_Hydrolase_24 Mem 26.0 1.1E+02 0.0024 23.3 3.9 16 164-179 2-17 (120)
4 PF01299 Lamp: Lysosome-associ 24.8 70 0.0015 29.7 3.0 30 49-80 258-287 (306)
5 COG2181 NarI Nitrate reductase 23.8 1.2E+02 0.0027 28.2 4.3 43 72-119 101-143 (228)
6 PRK15472 nucleoside triphospha 23.0 1.1E+02 0.0024 24.3 3.5 31 168-208 10-49 (141)
7 PF12046 DUF3529: Protein of u 21.3 27 0.00059 31.2 -0.4 34 27-60 20-57 (173)
8 PRK05379 bifunctional nicotina 21.2 40 0.00087 31.9 0.7 17 163-179 204-220 (340)
9 cd04673 Nudix_Hydrolase_15 Mem 21.1 1.6E+02 0.0035 22.1 3.9 17 164-180 2-18 (122)
10 PLN02325 nudix hydrolase 18.9 1.3E+02 0.0028 24.7 3.1 17 163-179 10-26 (144)
No 1
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=100.00 E-value=1.2e-65 Score=449.93 Aligned_cols=169 Identities=40% Similarity=0.561 Sum_probs=163.2
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCccceEecCCCCH
Q 025182 66 LPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPD 145 (256)
Q Consensus 66 LPl~vG~l~~~llL~Nr~ls~iapva~~t~sQsRAdVLgl~LSa~LiL~GllW~~~qP~~~~~V~L~G~e~f~l~~dLsd 145 (256)
||+++|+++++++++||+++ +++||||+||||||++||+++||+|++|+++||+++++|+|+|+|+|++++||||
T Consensus 1 LPl~vG~l~~~lll~N~~~~-----~~~t~sq~RaevLg~~ls~~liL~g~lw~~l~p~~~~~v~L~G~~~f~l~~~L~~ 75 (195)
T PF11152_consen 1 LPLIVGLLGGSLLLLNRLSG-----ADATPSQSRAEVLGLILSAVLILTGLLWQRLKPRSPEAVDLPGEQGFELSPDLSD 75 (195)
T ss_pred CceEehHHHHHHHHhhhccc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCccceEECCCCCH
Confidence 69999999999999999653 3999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeccccccchhHHHHHHHhccCceeeecccccCC
Q 025182 146 SVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPG 225 (256)
Q Consensus 146 ~~k~ELAWaS~~LLtnT~a~SvlV~~~G~vLLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~~~~~~~iyLvNL~LyPG 225 (256)
++|+||||+||+|||||+|+||+|||||+++||||+++++ ++|+||+||+|+||+++++||+|++||||
T Consensus 76 ~~k~ELAWas~~LLt~T~a~svlV~~~g~~llrrG~~~~~-----------~~~~~g~i~~~~~~~~~~~yL~nl~lyPG 144 (195)
T PF11152_consen 76 AAKEELAWASYALLTNTNARSVLVYYDGRVLLRRGILGSP-----------SKFKPGPICQRAMESGKLIYLVNLKLYPG 144 (195)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEEEECCEEEEEeeccCCC-----------CCcchHHHHHHHHhcCCceeccccccCCC
Confidence 9999999999999999999999999999999999999874 38999999999999999999999999999
Q ss_pred CCCCCCCCCCCccc----cccceeeEEee
Q 025182 226 RSELPFLPSNTQVH----TGELIFLTCSF 250 (256)
Q Consensus 226 R~EFd~LP~NtqaV----~~e~~~~~~~~ 250 (256)
|+||||||+||||| ++++|+|++|-
T Consensus 145 r~Ef~~lP~ntq~VlvqP~g~~G~lvlgs 173 (195)
T PF11152_consen 145 RVEFDYLPENTQSVLVQPLGQNGVLVLGS 173 (195)
T ss_pred chhhhhcCCCCcEEEEEEcCCCeEEEEee
Confidence 99999999999999 88899999984
No 2
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=26.67 E-value=1.4e+02 Score=26.16 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeccccccchhHHHHHHHhccCceeeecc
Q 025182 146 SVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANL 220 (256)
Q Consensus 146 ~~k~ELAWaS~~LLtnT~a~SvlV~~~G~vLLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~~~~~~~iyLvNL 220 (256)
+..+...=.-+.|...|.+ +|.|..+.++|...|.-...- .+ . .--+..++++++++....-+-
T Consensus 53 ~~~~~A~~~aeII~~~t~~-aVaITDr~~ILA~~G~g~d~~-------~~--~-~is~~t~~~i~~gk~~~~~~~ 116 (180)
T TIGR02851 53 ELGDFAKEYAESLYQSLGH-IVLITDRDTVIAVAGVSKKEY-------LN--K-PISDELEDTMEERKTVILSDT 116 (180)
T ss_pred chHHHHHHHHHHHHHHhCC-EEEEECCCcEEEEECCChhhc-------CC--C-ccCHHHHHHHHcCCEEEecCC
Confidence 3445555567899999999 999999999999999765421 00 1 122457899999998766654
No 3
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=26.04 E-value=1.1e+02 Score=23.28 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=12.5
Q ss_pred ccEEEEEECCEEEEEE
Q 025182 164 CRSLVVVYDGIYLLQI 179 (256)
Q Consensus 164 a~SvlV~~~G~vLLrR 179 (256)
+-.++|..+|++||.|
T Consensus 2 ~v~~vi~~~~~vLL~~ 17 (120)
T cd04683 2 AVYVLLRRDDEVLLQR 17 (120)
T ss_pred cEEEEEEECCEEEEEE
Confidence 3456788899999987
No 4
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.79 E-value=70 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred ccchhhhccCchhHhhhhhHHHHHHHHHHHHH
Q 025182 49 QDLVADWVMNNDDAVRSLPIYVGGASLLAVLF 80 (256)
Q Consensus 49 ~~~~~dwv~~~~~~~R~LPl~vG~l~~~llL~ 80 (256)
+....|.-.|.+..+ +|++||+.++.|+++
T Consensus 258 Fg~a~~C~~D~~~~~--vPIaVG~~La~lvli 287 (306)
T PF01299_consen 258 FGTAEECSSDDTSDL--VPIAVGAALAGLVLI 287 (306)
T ss_pred CCChhcCCcCCccch--HHHHHHHHHHHHHHH
Confidence 455566666664333 899999887776665
No 5
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=23.84 E-value=1.2e+02 Score=28.18 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhh
Q 025182 72 GASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWL 119 (256)
Q Consensus 72 ~l~~~llL~Nr~ls~iapva~~t~sQsRAdVLgl~LSa~LiL~GllW~ 119 (256)
.+|+++++.||+... ..=-.-+++|.+.+++=.+.+++|+.-+
T Consensus 101 liG~~~L~~RR~~~~-----rvR~~St~~D~f~lilLla~~~~Gl~~~ 143 (228)
T COG2181 101 LIGLTLLLLRRLFDP-----RVRATSTPSDIFALLLLLAQLLLGLYAT 143 (228)
T ss_pred HHHHHHHHHHHHhcc-----ceeecCChhHHHHHHHHHHHHHhhhhhh
Confidence 456778899999854 4545668999999999888888998743
No 6
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=22.96 E-value=1.1e+02 Score=24.28 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEECCEEEEEE---------eeccCCCCCCcceeccccccchhHHHHHH
Q 025182 168 VVVYDGIYLLQI---------GMAAESGNSGEAVIVDASKLKQGSVYLGV 208 (256)
Q Consensus 168 lV~~~G~vLLrR---------Gi~~~~~~~~~a~~vd~~~~~pG~I~~r~ 208 (256)
+|..+|++||.+ |.|.-+. ..+.+|+..+.+
T Consensus 10 ii~~~~~vLl~~R~~~~~~~~g~W~lPg----------G~ve~gEs~~~a 49 (141)
T PRK15472 10 LIQNDGAYLLCKMADDRGVFPGQWALSG----------GGVEPGERIEEA 49 (141)
T ss_pred EEecCCEEEEEEecccCCCCCCceeCCc----------ccCCCCCCHHHH
Confidence 455789999976 5565443 256667655554
No 7
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=21.30 E-value=27 Score=31.16 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=25.1
Q ss_pred hhhhhhcc-cccccCcccCCCCCccch---hhhccCch
Q 025182 27 PRFIRASA-SSQSQGGYRGPKPSQDLV---ADWVMNND 60 (256)
Q Consensus 27 ~~~~~~~~-~~~~~~~~r~~~~~~~~~---~dwv~~~~ 60 (256)
=+|||||+ |++.+.++..++|..+.+ .+|..+++
T Consensus 20 ~ffiraS~KdRt~~~~~~s~~p~~~~~~~l~~yf~~r~ 57 (173)
T PF12046_consen 20 FFFIRASVKDRTEQVTFESPQPPDEVLEQLKAYFEQRN 57 (173)
T ss_pred HHHHHHhccccEEEEEEEcCCCHHHHHHHHHHHHHhcC
Confidence 47898875 788888999998855443 56776665
No 8
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=21.20 E-value=40 Score=31.93 Aligned_cols=17 Identities=35% Similarity=0.260 Sum_probs=12.7
Q ss_pred cccEEEEEECCEEEEEE
Q 025182 163 CCRSLVVVYDGIYLLQI 179 (256)
Q Consensus 163 ~a~SvlV~~~G~vLLrR 179 (256)
.+...+|..+|++||.+
T Consensus 204 vtv~avv~~~g~VLLvr 220 (340)
T PRK05379 204 VTVDAVVVQSGHVLLVR 220 (340)
T ss_pred eEEEEEEEECCEEEEEE
Confidence 45566778899998855
No 9
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.10 E-value=1.6e+02 Score=22.14 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=12.9
Q ss_pred ccEEEEEECCEEEEEEe
Q 025182 164 CRSLVVVYDGIYLLQIG 180 (256)
Q Consensus 164 a~SvlV~~~G~vLLrRG 180 (256)
+.+++|+.+|+++|.+-
T Consensus 2 ~v~~ii~~~~~vLl~~r 18 (122)
T cd04673 2 AVGAVVFRGGRVLLVRR 18 (122)
T ss_pred cEEEEEEECCEEEEEEE
Confidence 45677888999998763
No 10
>PLN02325 nudix hydrolase
Probab=18.95 E-value=1.3e+02 Score=24.65 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=12.8
Q ss_pred cccEEEEEECCEEEEEE
Q 025182 163 CCRSLVVVYDGIYLLQI 179 (256)
Q Consensus 163 ~a~SvlV~~~G~vLLrR 179 (256)
.+..++|..+|++||.|
T Consensus 10 ~~v~~vi~~~~~vLL~r 26 (144)
T PLN02325 10 VAVVVFLLKGNSVLLGR 26 (144)
T ss_pred EEEEEEEEcCCEEEEEE
Confidence 34566788899999966
Done!