Query 025182
Match_columns 256
No_of_seqs 87 out of 89
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im4_C Dual specificity A kina 39.6 9.8 0.00033 26.2 1.0 12 143-154 9-20 (45)
2 4gb7_A 6-aminohexanoate-dimer 34.3 74 0.0025 28.9 6.3 58 156-214 102-159 (422)
3 2w1r_A Spovt, stage V sporulat 26.5 88 0.003 24.0 4.7 59 155-224 8-66 (123)
4 3mmh_A FRMSR, methionine-R-sul 25.1 2.7E+02 0.0091 22.3 8.4 39 198-239 77-116 (167)
5 2pbt_A AP4A hydrolase; nudix p 20.1 62 0.0021 23.3 2.5 23 163-185 5-30 (134)
6 3i7u_A AP4A hydrolase; nudix p 18.2 89 0.003 23.6 3.1 16 164-179 6-21 (134)
7 3f6a_A Hydrolase, nudix family 15.8 77 0.0026 24.0 2.2 17 163-179 7-23 (159)
8 3rfb_A Putative uncharacterize 15.7 3.4E+02 0.012 22.2 6.3 39 198-239 77-116 (171)
9 1k2e_A Nudix homolog; nudix/MU 15.2 74 0.0025 24.2 2.0 15 165-179 4-18 (156)
10 1vhm_A Protein YEBR; structura 12.4 5.9E+02 0.02 20.9 9.3 39 198-239 88-127 (195)
No 1
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=39.63 E-value=9.8 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHH
Q 025182 143 LPDSVVSELLWA 154 (256)
Q Consensus 143 Lsd~~k~ELAWa 154 (256)
-+|..++||||-
T Consensus 9 ~~D~aqEEMAWq 20 (45)
T 3im4_C 9 NTDEAQEELAWK 20 (45)
T ss_dssp --CHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 467899999994
No 2
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=34.34 E-value=74 Score=28.88 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeccccccchhHHHHHHHhccCc
Q 025182 156 ESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQ 214 (256)
Q Consensus 156 ~~LLtnT~a~SvlV~~~G~vLLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~~~~~~~ 214 (256)
+..|..|.|.++||..+|+++..+- .+.-..+..-.+.--+|.--+.++-.+.++|+-
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~Y-~~~~~~dt~~~i~SvtKs~ta~~i~~lve~G~l 159 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYERY-FNGYNESEPHGMASLAKVFTGAIIQSLAEENRI 159 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEE-CTTCCTTSCEECGGGGHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCCCEEEEEECCEEEEEeC-CCCCCCCCeeeeeeccHHHHHHHHHHHHHcCCc
Confidence 4567889999999999999988763 332111111000000222235555667777765
No 3
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=26.47 E-value=88 Score=24.03 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeccccccchhHHHHHHHhccCceeeecccccC
Q 025182 155 WESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYP 224 (256)
Q Consensus 155 S~~LLtnT~a~SvlV~~~G~vLLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~~~~~~~iyLvNL~LyP 224 (256)
-+.|...|.+ .|.|..+.+++...|.-... -++ ..+ ++..+++|++++.++.-|-..++
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~~-------~~~-~~i--s~~~~~~i~~~k~~~~~~~~~~~ 66 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKKD-------YLN-KSI--SEMLERTMDQRSSVLESDAKSVQ 66 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHHH-------HBT-CBB--CHHHHHHHHHCSCEEESSCEEEE
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChhh-------cCC-Ccc--CHHHHHHHHcCCEEEEcCCcccc
Confidence 4678899999 99999999988888852210 111 133 66789999999999886655433
No 4
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=25.07 E-value=2.7e+02 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=30.3
Q ss_pred ccchh-HHHHHHHhccCceeeecccccCCCCCCCCCCCCCccc
Q 025182 198 KLKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQVH 239 (256)
Q Consensus 198 ~~~pG-~I~~r~~~~~~~iyLvNL~LyPGR~EFd~LP~NtqaV 239 (256)
.+.+| -||-+|.++++++.+.|..-+|+....+ .++.|.
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~~~~~---~~~~S~ 116 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAHPDHIACS---SLSRSE 116 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTCCCSS---TTCCEE
T ss_pred EeccCCChHHHHHhCCcEEEECCcccCcchhhcC---ccCCeE
Confidence 45665 6999999999999999999999854433 355554
No 5
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=20.13 E-value=62 Score=23.34 Aligned_cols=23 Identities=22% Similarity=0.080 Sum_probs=16.6
Q ss_pred cccEEEEEECCEEEEEE---eeccCC
Q 025182 163 CCRSLVVVYDGIYLLQI---GMAAES 185 (256)
Q Consensus 163 ~a~SvlV~~~G~vLLrR---Gi~~~~ 185 (256)
.+.+++|+.+|++||.+ |.|.-+
T Consensus 5 ~~~~~vi~~~~~vLl~~r~~~~w~~P 30 (134)
T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPSNVWSFP 30 (134)
T ss_dssp EEEEEEEEETTEEEEEECTTSCEECC
T ss_pred eEEEEEEEECCEEEEEEeCCCcEECC
Confidence 35567778899999987 666543
No 6
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=18.19 E-value=89 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=13.3
Q ss_pred ccEEEEEECCEEEEEE
Q 025182 164 CRSLVVVYDGIYLLQI 179 (256)
Q Consensus 164 a~SvlV~~~G~vLLrR 179 (256)
+++.||+.||++||.+
T Consensus 6 aag~vv~~~~~vLL~~ 21 (134)
T 3i7u_A 6 SAGGVLFKDGEVLLIK 21 (134)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCEEEEEE
Confidence 5677888999999875
No 7
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=15.75 E-value=77 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred cccEEEEEECCEEEEEE
Q 025182 163 CCRSLVVVYDGIYLLQI 179 (256)
Q Consensus 163 ~a~SvlV~~~G~vLLrR 179 (256)
.+.+++|+.+|++||.+
T Consensus 7 ~~v~~vi~~~~~vLL~~ 23 (159)
T 3f6a_A 7 FTVSVFIVCKDKVLLHL 23 (159)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEECCEEEEEE
Confidence 34566777899999986
No 8
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=15.72 E-value=3.4e+02 Score=22.22 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=30.6
Q ss_pred ccchh-HHHHHHHhccCceeeecccccCCCCCCCCCCCCCccc
Q 025182 198 KLKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQVH 239 (256)
Q Consensus 198 ~~~pG-~I~~r~~~~~~~iyLvNL~LyPGR~EFd~LP~NtqaV 239 (256)
.+..| -||-+|.++++++.+.|..-+|+....+ ..+.|.
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~i~~~---~~~~Se 116 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYLNYISCD---SLAKSE 116 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCSSCCCSC---TTCCEE
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCccccccC---cccCce
Confidence 56666 7999999999999999999999865443 245554
No 9
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=15.23 E-value=74 Score=24.18 Aligned_cols=15 Identities=40% Similarity=0.301 Sum_probs=11.4
Q ss_pred cEEEEEECCEEEEEE
Q 025182 165 RSLVVVYDGIYLLQI 179 (256)
Q Consensus 165 ~SvlV~~~G~vLLrR 179 (256)
.+.+|+.+|++||.+
T Consensus 4 ~~~vi~~~~~vLL~~ 18 (156)
T 1k2e_A 4 TSGVLVENGKVLLVK 18 (156)
T ss_dssp EEEECEETTEEEEEE
T ss_pred EEEEEEECCEEEEEE
Confidence 455666799999876
No 10
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=12.43 E-value=5.9e+02 Score=20.88 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=30.9
Q ss_pred ccchh-HHHHHHHhccCceeeecccccCCCCCCCCCCCCCccc
Q 025182 198 KLKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQVH 239 (256)
Q Consensus 198 ~~~pG-~I~~r~~~~~~~iyLvNL~LyPGR~EFd~LP~NtqaV 239 (256)
.+..| -||-+|.++++++.+.|+.-+|+....+. ++.|.
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~~~~~~~---~~~S~ 127 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSE 127 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTCTTCCCSCC---CCSEE
T ss_pred EecCCCChHHHHHhcCCEEEECCcccCcchhhcCC---CccEE
Confidence 45566 58999999999999999999998766543 45555
Done!