Your job contains 1 sequence.
>025183
MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRH
RDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHA
LDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKV
YDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYE
LQKYANVLHGLELLEC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025183
(256 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 385 4.7e-72 2
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 383 4.2e-71 2
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 330 2.6e-57 2
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 198 1.0e-39 4
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 220 2.5e-39 2
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 229 1.7e-34 2
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 229 1.7e-34 2
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 360 5.2e-33 1
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 214 6.2e-33 2
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 333 3.8e-30 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 330 7.9e-30 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 328 1.3e-29 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 328 1.3e-29 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 328 1.3e-29 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 328 1.3e-29 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 328 1.3e-29 1
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 326 2.1e-29 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 325 2.7e-29 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 325 2.7e-29 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 324 3.4e-29 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 322 5.6e-29 1
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 322 5.6e-29 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 322 5.6e-29 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 322 5.6e-29 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 322 5.6e-29 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 316 2.4e-28 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 232 4.5e-28 2
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 309 1.3e-27 1
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 307 2.2e-27 1
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 293 6.6e-26 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 288 2.2e-25 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 212 2.6e-25 2
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 284 5.9e-25 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 256 5.5e-22 1
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 247 4.9e-21 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 242 1.7e-20 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 190 9.3e-20 2
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 229 4.0e-19 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 227 6.5e-19 1
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 227 6.5e-19 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 224 1.4e-18 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 212 2.5e-17 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 212 2.5e-17 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 200 4.7e-16 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 194 2.0e-15 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 190 5.4e-15 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 134 4.5e-14 2
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 134 4.5e-14 2
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 171 5.6e-13 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 137 4.2e-09 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 107 1.0e-05 1
UNIPROTKB|H0YBT3 - symbol:CNOT7 "CCR4-NOT transcription c... 104 2.3e-05 1
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 385 (140.6 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 76/130 (58%), Positives = 98/130 (75%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
EL+ GL+ N+ V+WVTFHSAYDFGYLVK LT+R LP L EF+ + FFG++VYDVK
Sbjct: 149 ELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVK 208
Query: 185 HLIRFCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQK 243
H++RFC LYGGLDRV ++L V R VGK HQAGSDSLLT AF +++D +F + +K
Sbjct: 209 HIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVED-GAEK 267
Query: 244 YANVLHGLEL 253
+A VL+GLE+
Sbjct: 268 HAGVLYGLEV 277
Score = 362 (132.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 70/121 (57%), Positives = 92/121 (76%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHR-DPAANYNGLKA 72
I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSVELLKRQG 131
NVD L+LIQ+GLTLSD +GNLPDLG YIWEFNF+DFD+ R HA DS+ELL+R G
Sbjct: 72 NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131
Query: 132 L 132
+
Sbjct: 132 I 132
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 383 (139.9 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 76/130 (58%), Positives = 98/130 (75%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
EL+ GLV N++V+WVTFHSAYDFGYL+K LT+R LP L EF + V FGE+VYDVK
Sbjct: 151 ELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVK 210
Query: 185 HLIRFCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQK 243
H+++FC L+GGLDRV + L V R VGK HQAGSDSLLT HAF +++D +F + +K
Sbjct: 211 HMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EK 269
Query: 244 YANVLHGLEL 253
+A VL+GLE+
Sbjct: 270 HAGVLYGLEV 279
Score = 355 (130.0 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 73/120 (60%), Positives = 89/120 (74%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
++ REV+ NL SEFE I +ID YP ISMDTEFPGV+ + D +R +P Y LKAN
Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD--LRFTNPDDLYTLLKAN 74
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
VD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR AHA DS+ELL+RQG+
Sbjct: 75 VDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGI 134
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 330 (121.2 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 68/128 (53%), Positives = 91/128 (71%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
ELL G+VLN + WVTFH YDFGYL+K L+ + LPE++S+F ++ FF VYD+K
Sbjct: 153 ELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIK 211
Query: 185 HLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKY 244
+L+ FCT LYGGL+++ + LGV+RV G SHQAGSDSLLTL F+K+K+ F L KY
Sbjct: 212 YLMGFCTNLYGGLEKIAELLGVKRV-GISHQAGSDSLLTLRTFIKMKEFFFTGS--LLKY 268
Query: 245 ANVLHGLE 252
+ L GL+
Sbjct: 269 SGFLFGLD 276
Score = 277 (102.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 60/129 (46%), Positives = 83/129 (64%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PDSNIRHRDPAANYN 68
I IREV+ NL E I ID +P ++MDTEFPG+V + P+ N NY+
Sbjct: 14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYD 73
Query: 69 GLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLK 128
LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++ ALDS+ELL+
Sbjct: 74 TLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLR 132
Query: 129 RQGLVLNKD 137
+ + L K+
Sbjct: 133 KSAIDLEKN 141
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 198 (74.8 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 46/87 (52%), Positives = 58/87 (66%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRH-RDPAANYNGLKANV 74
IREV++ NL E +R LI+RY ISMDT FPGVV RP + R RD +Y L+ANV
Sbjct: 126 IREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRD--YHYQCLRANV 183
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGST 101
D+LN+IQIG+TL +E+G P ST
Sbjct: 184 DMLNVIQIGITLFNEDGENPPARPNST 210
Score = 149 (57.5 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 126 LLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKH 185
L+ G+V ++ ++W++FHSAYDFGYL+K L +LPE EF + +FF VYDVK+
Sbjct: 277 LMISSGMVCDESISWISFHSAYDFGYLLKLLWCNMLPEDQDEFKQLLRLFF-PNVYDVKY 335
Query: 186 LIR 188
++
Sbjct: 336 FMK 338
Score = 93 (37.8 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 197 LDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 238
L+ + + L V+R G +HQAGSDSLLT AF ++++K FG +
Sbjct: 369 LETLAEVLKVKRT-GPAHQAGSDSLLTGRAFFQMREKVFGGK 409
Score = 50 (22.7 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 99 GSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
G Y W+FNF+ F + ++ +E L + G+
Sbjct: 227 GPLPYTWQFNFQ-FSLKDDMYSQSQIESLLQAGI 259
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 220 (82.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
+ I V+ N+ EF RIR ++ YP ++MDTEFPGVV P R ++ NY + N
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDF-NYQQVFCN 79
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
V++L LIQ+G + +++G LP G +W+FNF +F A + +SVE+L++ G+
Sbjct: 80 VNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGI 132
Score = 216 (81.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 52/119 (43%), Positives = 68/119 (57%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
ELL GL+ + +TW+TF S YDFGYL+K +T LP++ S F F +D+K
Sbjct: 149 ELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIK 207
Query: 185 HLIRFCTC----LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEY 239
L+R C L GGL V L V+R G HQAGSD+LLT F KIK + FG+ +
Sbjct: 208 ILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFFGDNW 265
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 229 (85.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 161 (61.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
ELL G+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF +YDVK
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVK 196
Query: 185 HLIRFC 190
+L++ C
Sbjct: 197 YLMKSC 202
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 229 (85.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 161 (61.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
ELL G+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF +YDVK
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVK 196
Query: 185 HLIRFC 190
+L++ C
Sbjct: 197 YLMKSC 202
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 95/259 (36%), Positives = 140/259 (54%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I++V+ +NL E E+IR L+D Y I+MDTEFPG+V RP N R +Y L+ NVD
Sbjct: 9 IKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDY-HYQTLRLNVD 67
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
L +IQ+GLT SD EGNL W+FNFK F ++ +A DS++LL R G+
Sbjct: 68 QLKIIQLGLTFSDSEGNL-----AKPTCTWQFNFK-FSLSEDMYAQDSIDLLSRSGIEFK 121
Query: 136 KD----VTWVTF-HSAYDFGYL----VKCLTQR------VLPEKLSEFVTRVGV--FFGE 178
K+ + + F G + +K ++ L + L+ V + FFG
Sbjct: 122 KNEANGIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLDEADFFGS 181
Query: 179 K------VYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
+YD+K++++ C L GGL + L ++R+ G HQAGSDSLLT F K++
Sbjct: 182 ARTYFPCIYDIKYIMKSCKNLKGGLSELADDLDIKRI-GPQHQAGSDSLLTSTTFFKMRK 240
Query: 233 KHFGNEYELQKYANVLHGL 251
F N+ + KY N+L+GL
Sbjct: 241 MFFENQLDDSKYLNILYGL 259
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 214 (80.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 49/110 (44%), Positives = 68/110 (61%)
Query: 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTL 86
E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT
Sbjct: 3 EMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTF 61
Query: 87 SDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK 136
+E+G P G+ ST W+FNFK F++ +A DS+ELL G+ K
Sbjct: 62 MNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 105
Score = 161 (61.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
ELL G+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF +YDVK
Sbjct: 118 ELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVK 176
Query: 185 HLIRFC 190
+L++ C
Sbjct: 177 YLMKSC 182
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/127 (53%), Positives = 90/127 (70%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
EL+ G+VLN ++WVTFH YDFGYLVK LT + LP K ++F + V+F VYD+K
Sbjct: 143 ELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIK 201
Query: 185 HLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKY 244
HL+ FC L+GGL+R+ + +GVERV G HQAGSDSLLTL +F K+K+++F E KY
Sbjct: 202 HLMTFCNGLFGGLNRLAELMGVERV-GICHQAGSDSLLTLGSFRKLKERYFPGSTE--KY 258
Query: 245 ANVLHGL 251
VL+GL
Sbjct: 259 TGVLYGL 265
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 75/179 (41%), Positives = 114/179 (63%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK N
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKEN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++ G+
Sbjct: 69 VDLLKLIQVGLTFSDENGNLPTCGTDK-FCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 134 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTC 192
K++ FG L+ + VL + +S +VT F G YD +L++ TC
Sbjct: 128 FKKNIEKGI--DVVRFGELMMS-SGIVLNDAIS-WVT----FHGG--YDFGYLVKLLTC 176
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 93/260 (35%), Positives = 136/260 (52%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ N+ E +IR +I Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 IICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL ++Q+GLT +E+G+ P G+T W+FNFK F++ ++ DS++LL+ GL
Sbjct: 70 DLLKIVQLGLTFMNEDGDYPP---GTT--TWQFNFK-FNLTEDMYSQDSIDLLQNSGLQF 123
Query: 135 NKD----VTWVTFHSAYDFGYLVKC----------------LTQRVLPEKLSEF---VTR 171
K + + F LV C L + + +L E +
Sbjct: 124 KKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEEHEFFQ 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDNIDDAKYCGRLYGL 262
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 71/144 (49%), Positives = 96/144 (66%)
Query: 111 DFDIARHAHALDS---VELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 167
DF + + +DS ELL G+VLN++V WVTFHS YDFGYL+K LT + LPE +
Sbjct: 128 DF-VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTG 186
Query: 168 FVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAF 227
F + V+F +VYD+KHL++FC L+GGL+++ + L VERV G HQAGSDSLLT F
Sbjct: 187 FFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVERV-GICHQAGSDSLLTSCTF 244
Query: 228 LKIKDKHFGNEYELQKYANVLHGL 251
K+++ F E KY+ VL+GL
Sbjct: 245 RKLQENFFIGSME--KYSGVLYGL 266
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 71/181 (39%), Positives = 105/181 (58%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK N
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
V++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++ G
Sbjct: 69 VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSG-- 126
Query: 134 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEK--LSEFVTRVGVFFGEKVYDVKHLIRFCT 191
+ F +FG K + ++ L+E V V G YD +L++ T
Sbjct: 127 -------IDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSG---YDFGYLLKLLT 176
Query: 192 C 192
C
Sbjct: 177 C 177
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 94/260 (36%), Positives = 135/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 10 VICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 68
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 69 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLASSGLQF 122
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 123 QKHEEEGIDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 182
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 183 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 241
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 242 ELFFEDTIDDAKYCGRLYGL 261
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 94/260 (36%), Positives = 134/260 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR + Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK-DVTWV-TFHSA------------------YDFGYLVKCLTQRVLPEKLSEF---VTR 171
K + + T H A + GY + + + +L E
Sbjct: 124 QKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFH 183
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ F +YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K
Sbjct: 184 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMK 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 ELFFEDSIDDAKYCGRLYGL 262
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 97/259 (37%), Positives = 136/259 (52%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E +RIR + ++ I+MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKL-SEFVTRVGV 174
K + + F ++ GY L + + KL E V +
Sbjct: 125 KHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEI 184
Query: 175 F--FGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 95/259 (36%), Positives = 134/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 95/259 (36%), Positives = 134/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 95/259 (36%), Positives = 134/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 95/259 (36%), Positives = 134/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 95/259 (36%), Positives = 134/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT AF K+++
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMRE 243
Query: 233 KHFGNEYELQKYANVLHGL 251
F + + KY L+GL
Sbjct: 244 MFFEDHIDDAKYCGHLYGL 262
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 98/261 (37%), Positives = 135/261 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IREV+ NL E IR L+D YP +++DTEFPG V +P ++R P NY L++NVD
Sbjct: 47 IREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMY-PDYNYQTLRSNVD 105
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ G+T SD G LP W+FNFK F + ++ ++ELLK G+
Sbjct: 106 LLKIIQFGITFSDSTGCLP-----VPTCTWQFNFK-FSLKDDMYSPYAIELLKSCGIDFQ 159
Query: 136 K------DVTWVT--FHSA------------YDFGYLVKCLTQRVLPEKLSEFVTRVGVF 175
+ DV + F S+ + GY L +VL SE F
Sbjct: 160 RIEDYGIDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLL-KVL--SCSELPKSESDF 216
Query: 176 FG------EKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 229
F +YDVK+L++ C L GGL + + L V RV G HQAGSDSLLT F K
Sbjct: 217 FDLLRIYFPCIYDVKYLMKSCKNLKGGLSGLAEDLNVVRV-GPQHQAGSDSLLTNSTFFK 275
Query: 230 IKDKHFGNEYELQKYANVLHG 250
++++ F NE + KY +L+G
Sbjct: 276 LREEFFENEIDDHKYKGILYG 296
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 232 (86.7 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 52/123 (42%), Positives = 77/123 (62%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
+ +R+V++ NL SEF IR L+ +Y +S+ TEF G + RP R + +Y ++AN
Sbjct: 158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDY-HYQTMRAN 216
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VD LN IQ+GL+LSD GN PD G ST W+FNF +FD + + +S+ELL++ G+
Sbjct: 217 VDFLNPIQLGLSLSDANGNKPDNGP-ST---WQFNF-EFDPKKEIMSTESLELLRKSGIN 271
Query: 134 LNK 136
K
Sbjct: 272 FEK 274
Score = 107 (42.7 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 37/146 (25%), Positives = 62/146 (42%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVK 184
+LL GL+++ VTW+T+H+AYD G+L+ L +P +F V + YD+
Sbjct: 287 QLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM-PNFYDLN 345
Query: 185 HLIRFCTCLYG---------------GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 229
+ + L + LG+ R G SLL L +F +
Sbjct: 346 LVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRF-SIFTTTGGQSLLMLLSFCQ 404
Query: 230 IK--DKH-FGNEYELQKYANVLHGLE 252
+ H F N + KY V++G++
Sbjct: 405 LSKLSMHKFPNGTDFAKYQGVIYGID 430
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 88/263 (33%), Positives = 135/263 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V++ NL EF IR ++ +Y ++MDTEFPGVV RP R +Y L+ NVD
Sbjct: 21 IRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADY-HYQLLRCNVD 79
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT D++G P G Y W+FNFK F+++ +A DS++LL+ G+
Sbjct: 80 LLRIIQLGLTFMDDDGKTPP-G----YSTWQFNFK-FNLSEDMYAQDSIDLLQNSGIQFK 133
Query: 136 K---------DVTWVTFHSA-----------YDFGYLVKCLTQRVLPEKLSEFVTR---V 172
K D + S + GY L + + + L + +
Sbjct: 134 KHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDL 193
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
+ ++D+K+L++ C L GGL V L + RV G HQAGSD+LLT AF K+++
Sbjct: 194 LHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRV-GPQHQAGSDALLTGMAFFKMRE 252
Query: 233 KHFGNEYELQKYANVLHGLELLE 255
N++ + A+ + LLE
Sbjct: 253 VQHTNDFHITPVAHDVLFRYLLE 275
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 90/259 (34%), Positives = 133/259 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V+ NL E I +LI+RYP++SMDTEFPGVV RP + D +Y L+ANVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY-HYQTLRANVD 83
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
L +IQIGL LSDEEGN P T W+FNF F++ +A +S+ELL + G+
Sbjct: 84 SLKIIQIGLALSDEEGNAPV--EACT---WQFNFT-FNLQDDMYAPESIELLTKSGIDFK 137
Query: 136 K---------DVTWVTFHSA-----------YDFGYLVKCLTQRVLPEKL-SEFVT--RV 172
K D + S + GY L + + L +E+ ++
Sbjct: 138 KHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKI 197
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 232
+ K YD+K++++ GL + L + R+ G HQAGSD+LLT F +I+
Sbjct: 198 LCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRI-GPQHQAGSDALLTARIFFEIRS 256
Query: 233 KHFGNEYELQKYANVLHGL 251
++F + + N L+GL
Sbjct: 257 RYFDGSID-SRMLNQLYGL 274
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 94/268 (35%), Positives = 137/268 (51%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRP--DSNIRHRDPAANYNGLKA 72
L R V+ N+ E R+ + R+P+I+ DTE+PG++ R DS+ D Y +K
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSS---SDEC--YRAMKG 62
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDF-DIARHAHALDSVELLKRQG 131
NV+ LIQ G TL + +G ++G +WE NF +F D + + L S+E L+R G
Sbjct: 63 NVENTKLIQCGFTLFNAKG---EIGG-----VWEINFSNFGDPSDTRNEL-SIEFLRRHG 113
Query: 132 LVLNK------D-------------------VTWVTFHSAYDFGYLVKCLTQRVLPEKLS 166
L L K D V +VTF AYDF Y + L LPE
Sbjct: 114 LDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHG 173
Query: 167 EFVTRVGVFFGEKVYDVKHLIRFCTCL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTL 224
EF T V FG+ VYD K + FC L + GL ++ + L + RV G++H AGSDSL+T
Sbjct: 174 EFATEVVKVFGQ-VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRV-GRAHHAGSDSLMTA 231
Query: 225 HAFLKIKDKHFGNEYELQKYAN-VLHGL 251
F+K+K H YE ++A +++G+
Sbjct: 232 LVFIKLK--HV---YEDSRFARGLIYGI 254
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 87/235 (37%), Positives = 122/235 (51%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KD----VTWVTFHS----------------AYDFGYLVKCLTQRVLPEKLSEFVT---RV 172
K + F ++ GY L + + L E +
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 173 GVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAF 227
F +YDVK+L++ C L GGL V + L +ER+ G HQAGSDSLLT +A+
Sbjct: 185 LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGNAY 238
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 212 (79.7 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 49/129 (37%), Positives = 75/129 (58%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V++ NL E +R L++RYP ISMDTEFPG+V RP + ++ +Y L+ NVD
Sbjct: 138 IRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARPIGSFTNKADY-HYQTLRCNVD 196
Query: 76 LLNLIQIGLTLSDEEGNLPD----------LGSG--STYYIWEFNFKDFDIARHAHALDS 123
LL +IQ+G+TL +G +P LG+G W+FNF+ F + +A +S
Sbjct: 197 LLKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFR-FSLEEDMYAQES 255
Query: 124 VELLKRQGL 132
+L + G+
Sbjct: 256 TAMLAKAGI 264
Score = 166 (63.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 113 DIARHA-HALDSVE---LLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 168
D A H + +D +E LL GLVL DV W++FHS YDFGYL+K + + LPE EF
Sbjct: 265 DFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGYLMKIMLCQALPENEEEF 324
Query: 169 VTRVGVFFGEKVYDVKHLIRFCT 191
+ +FF +YD+K+L++ T
Sbjct: 325 HKLLNIFF-PSLYDIKYLMKHAT 346
Score = 104 (41.7 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 37/113 (32%), Positives = 53/113 (46%)
Query: 141 VTFHSAYDFGYLVKCLT--QRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLD 198
+ F S YD YL+K T Q V L+ ++ G+K GL
Sbjct: 330 IFFPSLYDIKYLMKHATRNQAVNDSPLTPAAAQIISNLGQK---------------SGLQ 374
Query: 199 RVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
+ LGV+RV G +HQAGSDSL+T F K++ F + + KY+ + GL
Sbjct: 375 DIADELGVKRV-GIAHQAGSDSLVTGEIFWKMRQLVFNGKIDDSKYSGQIWGL 426
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 61/131 (46%), Positives = 83/131 (63%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKV 180
L ELL G+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF +
Sbjct: 28 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSI 86
Query: 181 YDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYE 240
YDVK+L++ C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F + +
Sbjct: 87 YDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFEDSID 145
Query: 241 LQKYANVLHGL 251
KY L+GL
Sbjct: 146 DAKYCGRLYGL 156
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 81/230 (35%), Positives = 112/230 (48%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N +E IR + I++DTEFPG + ++ + D Y +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCL--KETPMDASDEI-RYRDMKFNVDNT 60
Query: 78 NLIQIGLTLSDE------EGNLPD------LGSGSTYYIWEFNFKDFDIARHAHALDSVE 125
+LIQ+GLTL + E NL D L + + + N D D R + E
Sbjct: 61 HLIQLGLTLFGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIRE-EGIGIEE 119
Query: 126 LLKRQGLVLNKD---VTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYD 182
+LN+ + WVTF +YD YL+K LT++ LPE EF V G VYD
Sbjct: 120 FFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYD 179
Query: 183 VKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230
VK + C+ L GL R+ L + RV GK+H AGSDS LT F K+
Sbjct: 180 VKKMAGLCSGLSSRFGLQRIADVLQMRRV-GKAHHAGSDSELTARVFTKL 228
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 79/233 (33%), Positives = 110/233 (47%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N E + IR + + I++DTEFPG + + Y +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEE---IRYRDMKFNVDNT 59
Query: 78 NLIQIGLTLSDEEG-------NLPDLGSGSTYY------IWEFNFKDFD-IARHAHALDS 123
+LIQ+G TL D G NL D + + N + D I ++
Sbjct: 60 HLIQLGFTLFDRRGITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIE- 118
Query: 124 VELLKRQGLVLN-KD--VTWVTFHSAYDFGYLVKCLTQ-RVLPEKLSEFVTRVGVFFGEK 179
E + +L KD +TWV F +YD YLVK LT + LPE EF V G+
Sbjct: 119 -EFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKF 177
Query: 180 VYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230
V+DVK + C+ L GL R+ L ++RV GK+H AGSDS LT F K+
Sbjct: 178 VFDVKKIAESCSGLSSRFGLQRIADVLQMKRV-GKAHHAGSDSELTARVFTKL 229
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 79/232 (34%), Positives = 107/232 (46%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N E IR + I++DTEFPG + + Y +K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEE---IRYRDMKFNVDNT 64
Query: 78 NLIQIGLTLSDEEG-------NLPDLGSGSTYY------IWEFNFKDFDIARHAHALDSV 124
+LIQ+G TL D G NL D + + N + D R +
Sbjct: 65 HLIQLGFTLFDRRGFAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIRE-EGIGID 123
Query: 125 ELLKRQGLVLN-KD--VTWVTFHSAYDFGYLVKCLTQ-RVLPEKLSEFVTRVGVFFGEKV 180
E + +L KD +TWV F +YD YLVK LT + LPE EF V G+ V
Sbjct: 124 EFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFV 183
Query: 181 YDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230
+DVK + C+ L GL R+ L ++RV GK+H AGSDS LT F K+
Sbjct: 184 FDVKKIAESCSGLSSQFGLQRIADVLQMKRV-GKAHHAGSDSELTARVFTKL 234
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 190 (71.9 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFK 110
DLL +IQ+GLT ++E+G P SG W+FNFK
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK 100
Score = 59 (25.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 145 SAYDFGYLVKCLTQRVLP 162
+ YDFGY+VK LT LP
Sbjct: 104 TGYDFGYMVKLLTDSRLP 121
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 49/107 (45%), Positives = 68/107 (63%)
Query: 145 SAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL 204
+ YDFGY+VK LT LPE+ EF + +FF +YDVK+L++ C L GGL V L
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 205 GVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
++R+ G+ HQAGSDSLLT AF ++K+ F + + KY L+GL
Sbjct: 163 DLQRI-GRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 208
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P G + + ++FN +D L L + +
Sbjct: 70 DLLKIIQLGLTFTNEKGEYPS-GINTWQFNFKFNLTGYDFGYMVKLLTDSRLPEEEHEFF 128
Query: 135 NKDVTWVTFHSAYDFGYLVK 154
+ + + F S YD YL+K
Sbjct: 129 H--ILNLFFPSIYDVKYLMK 146
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 49/107 (45%), Positives = 68/107 (63%)
Query: 145 SAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL 204
+ YDFGY+VK LT LPE+ EF + +FF +YDVK+L++ C L GGL V L
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 205 GVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
++R+ G+ HQAGSDSLLT AF ++K+ F + + KY L+GL
Sbjct: 163 DLQRI-GRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 208
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P G + + ++FN +D L L + +
Sbjct: 70 DLLKIIQLGLTFTNEKGEYPS-GINTWQFNFKFNLTGYDFGYMVKLLTDSRLPEEEHEFF 128
Query: 135 NKDVTWVTFHSAYDFGYLVK 154
+ + + F S YD YL+K
Sbjct: 129 H--ILNLFFPSIYDVKYLMK 146
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/113 (44%), Positives = 69/113 (61%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/113 (44%), Positives = 69/113 (61%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLL 116
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 66/212 (31%), Positives = 99/212 (46%)
Query: 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLG 97
Y I++DTEFP + +H Y + +VD LIQ+GLTL D G +
Sbjct: 11 YRFIAIDTEFPSTL---RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIGGTW 67
Query: 98 --SGSTYYIWEF-NFKDFDIARHAHALDSVELLKRQGL-----------VLNK---DVTW 140
+ S + + + N K + R + LD + ++ +G+ +L K ++TW
Sbjct: 68 EINFSDFGVDDARNEKSIEFLRR-NGLD-LRKIREEGIRIEGFFSEMFWMLKKTRRNITW 125
Query: 141 VTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYG--GLD 198
VTFH +YD YL+K T LP F V G VYD+K + C L GL+
Sbjct: 126 VTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGS-VYDLKVMAGRCEGLSSRLGLE 184
Query: 199 RVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230
+ G+ RV G +H AGS++ LT F K+
Sbjct: 185 TLAHEFGLNRV-GTAHHAGSNNELTAMVFAKV 215
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 152 LVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVG 211
+VK LT LPE+ EF + +FF +YDVK+L++ C L GGL V L ++R+ G
Sbjct: 1 MVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-G 58
Query: 212 KSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
+ HQAGSDSLLT AF ++K+ F + + KY L+GL
Sbjct: 59 RQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 98
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFK 110
DLL +IQ+GLT ++E+G P SG W+FNFK
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK 100
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 134 (52.2 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 15 LIREVFEFNLISEFERIRALI-DRYP--IISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
+I+EV+ NL EF+ +R I D+ I++ E PG+V RP + ++ L+
Sbjct: 153 IIKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDY-HFQTLR 211
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
AN DLLNLIQ+ L + N + ST IW+FNF +D+ + + + + +L
Sbjct: 212 ANSDLLNLIQLSLCVIKISKN----ETISTPVIWQFNFL-YDLTKEMYNEEHLAML 262
Score = 113 (44.8 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 42/157 (26%), Positives = 70/157 (44%)
Query: 106 EFNFKDFDIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKL 165
+ NF+ H + EL+ GL+L+ ++ WV+FH+ YD G+ V L+ LP
Sbjct: 267 QINFQLLSTHGIPH-FEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDE 325
Query: 166 SEFVTRVGVFFGEKVYDVKH-----LIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDS 220
+F +F YD+K+ L + T GG + L E+ S + ++
Sbjct: 326 PDFYWWCAKYF-PNFYDLKYIGNQILNKSTTNGAGGTNS--NTLD-EKTNKPSIEYLAEE 381
Query: 221 LLTLHAFLKIKDKHFGNE-YELQKYANVLHGLELLEC 256
L L I+ +HF N + Q+ + LH +EC
Sbjct: 382 LHLLPISPAIR-QHFTNSTFHSQQLTSTLHAYLSMEC 417
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 134 (52.2 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 15 LIREVFEFNLISEFERIRALI-DRYP--IISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
+I+EV+ NL EF+ +R I D+ I++ E PG+V RP + ++ L+
Sbjct: 153 IIKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDY-HFQTLR 211
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
AN DLLNLIQ+ L + N + ST IW+FNF +D+ + + + + +L
Sbjct: 212 ANSDLLNLIQLSLCVIKISKN----ETISTPVIWQFNFL-YDLTKEMYNEEHLAML 262
Score = 113 (44.8 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 42/157 (26%), Positives = 70/157 (44%)
Query: 106 EFNFKDFDIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKL 165
+ NF+ H + EL+ GL+L+ ++ WV+FH+ YD G+ V L+ LP
Sbjct: 267 QINFQLLSTHGIPH-FEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDE 325
Query: 166 SEFVTRVGVFFGEKVYDVKH-----LIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDS 220
+F +F YD+K+ L + T GG + L E+ S + ++
Sbjct: 326 PDFYWWCAKYF-PNFYDLKYIGNQILNKSTTNGAGGTNS--NTLD-EKTNKPSIEYLAEE 381
Query: 221 LLTLHAFLKIKDKHFGNE-YELQKYANVLHGLELLEC 256
L L I+ +HF N + Q+ + LH +EC
Sbjct: 382 LHLLPISPAIR-QHFTNSTFHSQQLTSTLHAYLSMEC 417
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLP 94
DLL +IQ+GLT ++E+G P
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP 89
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 176
L ELL G+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF
Sbjct: 28 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 83
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIR 59
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR 55
>UNIPROTKB|H0YBT3 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000518541 Uniprot:H0YBT3
Length = 91
Score = 104 (41.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 147 YDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFC 190
YDFGYL+K LT LPE+ +F + +FF +YDVK+L++ C
Sbjct: 3 YDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSC 45
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.143 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 256 248 0.00079 114 3 11 22 0.39 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 602 (64 KB)
Total size of DFA: 193 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.91u 0.09s 20.00t Elapsed: 00:00:13
Total cpu time: 19.92u 0.09s 20.01t Elapsed: 00:00:13
Start: Thu May 9 20:01:55 2013 End: Thu May 9 20:02:08 2013