BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025183
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 270 bits (690), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/268 (53%), Positives = 185/268 (69%), Gaps = 28/268 (10%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNI-RHRDPAANYNGLKA 72
I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSVELLKRQG 131
NVD L+LIQ+GLTLSD +GNLPDLG YIWEFNF+DFD+ R HA DS+ELL+R G
Sbjct: 72 NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131
Query: 132 ------------------------LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 167
L+ N+ V+WVTFHSAYDFGYLVK LT+R LP L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191
Query: 168 FVTRVGVFFGEKVYDVKHLIRFCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHA 226
F+ + FFG++VYDVKH++RFC LYGGLDRV ++L V R VGK HQAGSDSLLT A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251
Query: 227 FLKIKDKHFGNEYELQKYANVLHGLELL 254
F +++D +F E +K+A VL+GLE+
Sbjct: 252 FQRMRDLYF-VEDGAEKHAGVLYGLEVF 278
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/283 (53%), Positives = 190/283 (67%), Gaps = 32/283 (11%)
Query: 1 MSDVPPPQPPKP---RILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSN 57
M+ + P + KP ++ REV+ NL SEFE I +ID YP ISMDTEFPGV+ + S+
Sbjct: 1 MAIIKPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFK--SD 58
Query: 58 IRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIAR 116
+R +P Y LKANVD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR
Sbjct: 59 LRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVAR 118
Query: 117 HAHALDSVELLKRQG------------------------LVLNKDVTWVTFHSAYDFGYL 152
AHA DS+ELL+RQG LV N++V+WVTFHSAYDFGYL
Sbjct: 119 DAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYL 178
Query: 153 VKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT-CLYGGLDRVCKALGVERVVG 211
+K LT+R LP L EF + V FGE+VYDVKH+++FC L+GGLDRV + L V R VG
Sbjct: 179 MKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVG 238
Query: 212 KSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 254
K HQAGSDSLLT HAF +++D +F + +K+A VL+GLE+
Sbjct: 239 KCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EKHAGVLYGLEVF 280
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 233 bits (594), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 173/262 (66%), Gaps = 30/262 (11%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK N
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKEN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKR---- 129
VDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++
Sbjct: 69 VDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 130 --------------------QGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 169
G+VLN ++WVTFH YDFGYLVK LT + LP K ++F
Sbjct: 128 FKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFF 187
Query: 170 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 229
+ V+F VYD+KHL+ FC L+GGL+R+ + +GVER VG HQAGSDSLLTL +F K
Sbjct: 188 KLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRK 245
Query: 230 IKDKHFGNEYELQKYANVLHGL 251
+K+++F E KY VL+GL
Sbjct: 246 LKERYFPGSTE--KYTGVLYGL 265
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 224 bits (570), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 172/281 (61%), Gaps = 34/281 (12%)
Query: 1 MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PD 55
MS P P+ I IREV+ NL E I ID +P ++MDTEFPG+V + P+
Sbjct: 1 MSQAPNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPN 60
Query: 56 SNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIA 115
N NY+ LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++
Sbjct: 61 PNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVI 119
Query: 116 RHAHALDSVELLKRQ------------------------GLVLNKDVTWVTFHSAYDFGY 151
ALDS+ELL++ G+VLN + WVTFH YDFGY
Sbjct: 120 SDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGY 179
Query: 152 LVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVG 211
L+K L+ + LPE++S+F ++ FF VYD+K+L+ FCT LYGGL+++ + LGV+R VG
Sbjct: 180 LLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VG 237
Query: 212 KSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLE 252
SHQAGSDSLLTL F+K+K+ F L KY+ L GL+
Sbjct: 238 ISHQAGSDSLLTLRTFIKMKEFFFTG--SLLKYSGFLFGLD 276
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 168/262 (64%), Gaps = 29/262 (11%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK N
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKR---- 129
V++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++
Sbjct: 69 VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGID 128
Query: 130 --------------------QGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 169
G+VLN++V WVTFHS YDFGYL+K LT + LPE + F
Sbjct: 129 FVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFF 188
Query: 170 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 229
+ V+F +VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K
Sbjct: 189 EMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRK 246
Query: 230 IKDKHFGNEYELQKYANVLHGL 251
+++ F ++KY+ VL+GL
Sbjct: 247 LQENFFIG--SMEKYSGVLYGL 266
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 167/262 (63%), Gaps = 30/262 (11%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL E + IR ++D +P ++MDTEFPG+VVRP + + +Y LK N
Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFK-SNADYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL- 132
V++L +IQ+GLT S+E+GNLP G+ Y IW+FNF++FD+ ALDS+ELLK+ G+
Sbjct: 69 VNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 127
Query: 133 -----------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 169
VLN++V WVTFHS YDFGYL+K LT + LP+ ++F
Sbjct: 128 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 187
Query: 170 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 229
+ V+F VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K
Sbjct: 188 KLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRK 245
Query: 230 IKDKHFGNEYELQKYANVLHGL 251
+K+ F L KY+ VL+GL
Sbjct: 246 LKENFFVG--PLHKYSGVLYGL 265
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 149/270 (55%), Gaps = 33/270 (12%)
Query: 6 PPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAA 65
P + +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 2 PAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDY 60
Query: 66 NYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVE 125
Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++
Sbjct: 61 QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSID 114
Query: 126 LLKRQGL------------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVL 161
LL GL VL +V W++FHS YDFGY+VK LT L
Sbjct: 115 LLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRL 174
Query: 162 PEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 221
PE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSL
Sbjct: 175 PEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSL 232
Query: 222 LTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
LT AF ++K+ F + + KY L+GL
Sbjct: 233 LTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 149/270 (55%), Gaps = 33/270 (12%)
Query: 6 PPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAA 65
P + +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 2 PAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDY 60
Query: 66 NYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVE 125
Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++
Sbjct: 61 QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSID 114
Query: 126 LLKRQGL------------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVL 161
LL GL VL +V W++FHS YDFGY+VK LT L
Sbjct: 115 LLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRL 174
Query: 162 PEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 221
PE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSL
Sbjct: 175 PEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSL 232
Query: 222 LTLHAFLKIKDKHFGNEYELQKYANVLHGL 251
LT AF ++K+ F + + KY L+GL
Sbjct: 233 LTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 146/260 (56%), Gaps = 34/260 (13%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V+ NL E I +LI+RYP++SMDTEFPGVV RP + D +Y L+ANVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSD-DYHYQTLRANVD 83
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG---- 131
L +IQIGL LSDEEGN P W+FNF F++ +A +S+ELL + G
Sbjct: 84 SLKIIQIGLALSDEEGNAPVEAC-----TWQFNFT-FNLQDDMYAPESIELLTKSGIDFK 137
Query: 132 --------------------LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
LVL ++VTW+TFHS YDF YL+K +TQ LP + EF
Sbjct: 138 KHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKI 197
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ ++F K YD+K++++ GL + L + R +G HQAGSD+LLT F +I+
Sbjct: 198 LCIYF-PKNYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIR 255
Query: 232 DKHFGNEYELQKYANVLHGL 251
++F + + N L+GL
Sbjct: 256 SRYFDGSID-SRMLNQLYGL 274
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 147/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 147/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 146/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE +F
Sbjct: 125 KHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 147/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 147/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 146/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFVNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K LT LPE +F
Sbjct: 125 KHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L ++R +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 146/260 (56%), Gaps = 33/260 (12%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E +RIR + ++ I+MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL--- 132
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 133 ---------------------VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 171
VL + V W++FHS YDFGYL+K L+ LP++ +F
Sbjct: 125 KHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEI 184
Query: 172 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 231
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 232 DKHFGNEYELQKYANVLHGL 251
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 135/256 (52%), Gaps = 37/256 (14%)
Query: 12 PRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
P + I V+ N+ EF RIR ++ YP ++MDTEFPGVV P R ++ NY +
Sbjct: 19 PEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKED-FNYQQVF 77
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKR-- 129
NV++L LIQ+G + +++G LP G +W+FNF +F A + +SVE+L++
Sbjct: 78 CNVNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAG 131
Query: 130 ----------------------QGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 167
GL+ + +TW+TF S YDFGYL+K +T LP++ S
Sbjct: 132 IDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEEST 191
Query: 168 FVTRVGVFFGEKVYDVKHLIRFCTC----LYGGLDRVCKALGVERVVGKSHQAGSDSLLT 223
F F +D+K L+R C L GGL V L V+R G HQAGSD+LLT
Sbjct: 192 FFMCHKTLF-PTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKR-QGVRHQAGSDALLT 249
Query: 224 LHAFLKIKDKHFGNEY 239
F KIK + FG+ +
Sbjct: 250 AATFFKIKKQFFGDNW 265
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 120/246 (48%), Gaps = 44/246 (17%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAAN--YNGLKA 72
L R V+ N+ E R+ + R+P+I+ DTE+PG++ R + D +++ Y +K
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFR-----TYFDSSSDECYRAMKG 62
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
NV+ LIQ G TL + +G + +WE NF +F S+E L+R GL
Sbjct: 63 NVENTKLIQCGFTLFNAKGEIGG--------VWEINFSNFGDPSDTRNELSIEFLRRHGL 114
Query: 133 VLNK-------------------------DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 167
L K V +VTF AYDF Y + L LPE E
Sbjct: 115 DLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGE 174
Query: 168 FVTRVGVFFGEKVYDVKHLIRFCTCL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTLH 225
F T V FG+ VYD K + FC L + GL ++ + L + R VG++H AGSDSL+T
Sbjct: 175 FATEVVKVFGQ-VYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTAL 232
Query: 226 AFLKIK 231
F+K+K
Sbjct: 233 VFIKLK 238
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 134/286 (46%), Gaps = 50/286 (17%)
Query: 9 PPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYN 68
PP + +R+V++ NL SEF IR L+ +Y +S+ TEF G + RP R + +Y
Sbjct: 153 PPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKV-DYHYQ 211
Query: 69 GLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLK 128
++ANVD LN IQ+GL+LSD GN PD G + W+FNF +FD + + +S+ELL+
Sbjct: 212 TMRANVDFLNPIQLGLSLSDANGNKPDNGPST----WQFNF-EFDPKKEIMSTESLELLR 266
Query: 129 R------------------------QGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEK 164
+ GL+++ VTW+T+H+AYD G+L+ L +P
Sbjct: 267 KSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNN 326
Query: 165 LSEFVTRVGVFFGEKVYDVKHLIRFCTCLYG---------------GLDRVCKALGVERV 209
+F V + YD+ + + L + LG+ R
Sbjct: 327 KEDFEWWVHQYM-PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRF 385
Query: 210 VGKSHQAGSDSLLTLHAFL---KIKDKHFGNEYELQKYANVLHGLE 252
+ G SLL L +F K+ F N + KY V++G++
Sbjct: 386 SIFT-TTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGID 430
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 114/243 (46%), Gaps = 48/243 (19%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N +E IR + I++DTEFPG + + IR+RD +K N
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD-------MKFN 56
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VD +LIQ+GLTL G G T WE N DF+ ++ S+ LK GL
Sbjct: 57 VDNTHLIQLGLTL---------FGKGITK-TWEINLSDFNESKSLKNDKSIAFLKNNGLD 106
Query: 134 LNK------------------------DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 169
L+K + WVTF +YD YL+K LT++ LPE EF
Sbjct: 107 LDKIREEGIGIEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFD 166
Query: 170 TRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAF 227
V G VYDVK + C+ L GL R+ L + R VGK+H AGSDS LT F
Sbjct: 167 ETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRR-VGKAHHAGSDSELTARVF 225
Query: 228 LKI 230
K+
Sbjct: 226 TKL 228
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 113/244 (46%), Gaps = 48/244 (19%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N E + IR + + I++DTEFPG + + IR+RD +K N
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFN 55
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VD +LIQ+G TL D G WE N DF+ + S+ LK GL
Sbjct: 56 VDNTHLIQLGFTLFDRRG---------ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLN 106
Query: 134 LNK------------------------DVTWVTFHSAYDFGYLVKCLT-QRVLPEKLSEF 168
L+K +TWV F +YD YLVK LT + LPE EF
Sbjct: 107 LDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 166
Query: 169 VTRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHA 226
V G+ V+DVK + C+ L GL R+ L ++R VGK+H AGSDS LT
Sbjct: 167 HETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELTARV 225
Query: 227 FLKI 230
F K+
Sbjct: 226 FTKL 229
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 111/244 (45%), Gaps = 48/244 (19%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N E IR + I++DTEFPG + + IR+RD +K N
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFN 60
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VD +LIQ+G TL D G WE N DFD + S+ LK GL
Sbjct: 61 VDNTHLIQLGFTLFDRRGFAK---------TWEINLSDFDEHKCFKNDKSIAFLKSNGLN 111
Query: 134 LNK------------------------DVTWVTFHSAYDFGYLVKCLT-QRVLPEKLSEF 168
L+K +TWV F +YD YLVK LT + LPE EF
Sbjct: 112 LDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 171
Query: 169 VTRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHA 226
V G+ V+DVK + C+ L GL R+ L ++R VGK+H AGSDS LT
Sbjct: 172 HETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTARV 230
Query: 227 FLKI 230
F K+
Sbjct: 231 FTKL 234
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 98/219 (44%), Gaps = 40/219 (18%)
Query: 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLG 97
Y I++DTEFP + +H Y + +VD LIQ+GLTL D G +
Sbjct: 11 YRFIAIDTEFPSTL---RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI---- 63
Query: 98 SGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK--------------------- 136
G T WE NF DF + A S+E L+R GL L K
Sbjct: 64 -GGT---WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKK 118
Query: 137 ---DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCL 193
++TWVTFH +YD YL+K T LP F V G VYD+K + C L
Sbjct: 119 TRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGL 177
Query: 194 YG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230
GL+ + G+ R VG +H AGS++ LT F K+
Sbjct: 178 SSRLGLETLAHEFGLNR-VGTAHHAGSNNELTAMVFAKV 215
>sp|Q89AP6|APBE_BUCBP Probable thiamine biosynthesis protein ApbE OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=apbE PE=3 SV=1
Length = 341
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 71 KANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEF----------NFKDFDIARHAHA 120
K N +L LI IGL + + NL D+ SG+ IW F + K +A+
Sbjct: 92 KINKNLAKLISIGLLVGKKTNNLLDITSGTLINIWGFGPTSRKHSIPSKKTIKLAQMLTG 151
Query: 121 LDSVELL-KRQGLVLNKDV 138
L+ ++LL +Q L KD+
Sbjct: 152 LNHIKLLINKQQYYLQKDI 170
>sp|Q9HN74|DLDH_HALSA Dihydrolipoyl dehydrogenase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=lpdA PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 134 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGV-----------FFGEKVYD 182
L DVT V + Y CL +P K +T GV + + D
Sbjct: 31 LGLDVTLVEKDA-----YGGTCLNYGCIPSKA--MITASGVAHEAGHAEEMGVYADPDVD 83
Query: 183 VKHLIRF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHA 226
V ++ + L GG++++CKA GV + G++ AGSD L +H
Sbjct: 84 VAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRVVHG 131
>sp|Q8Y210|LNT_RALSO Apolipoprotein N-acyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=lnt PE=3 SV=1
Length = 523
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTL 86
+ R+RAL P++ VVRPD +++ R P L+A+V + GLT
Sbjct: 438 QISRMRALESGRPMLRATNTGATAVVRPDGSVQARLPVFTLGTLQADVQGMQ----GLTP 493
Query: 87 SDEEGNLP 94
GN P
Sbjct: 494 FVRTGNAP 501
>sp|P39822|PSD_BACSU Phosphatidylserine decarboxylase proenzyme OS=Bacillus subtilis
(strain 168) GN=psd PE=3 SV=1
Length = 263
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 84 LTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDS-VELLKRQGLVLNKDVTWVT 142
L D +G D GS S +I + N + +++ AHA+ S V+ + + ++N + T+
Sbjct: 48 LNWDDVDGTAADYGSLSELFIRQINLERRPVSKEAHAVVSPVDGVVQTVGIINPNQTFTV 107
Query: 143 FHSAYDFGYLVKC 155
Y F L C
Sbjct: 108 KGKDYSFAELTGC 120
>sp|Q58750|Y1355_METJA Uncharacterized protein MJ1355 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1355 PE=4 SV=1
Length = 571
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 113 DIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQ 158
D+ H L+S EL+KR+ +V NKD W+T +FG VK L +
Sbjct: 306 DLGAVLHTLESKELIKRE-VVKNKDTYWMT-----EFGEKVKDLGE 345
>sp|Q3BAQ2|RPOC2_PHAAO DNA-directed RNA polymerase subunit beta'' OS=Phalaenopsis
aphrodite subsp. formosana GN=rpoC2 PE=3 SV=1
Length = 1388
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 171 RVGVFFGEKVYD---VKHLIRFCTCLYGG------LDRVCKALGVERVVGKSHQAGSDSL 221
R + F KV D +K LI +G LD+V KALG+ R S G D L
Sbjct: 8 RTNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQV-KALGLRRATATSISLGIDDL 66
Query: 222 LTL------------HAFLKIKDKHFGNEYELQK 243
LT+ +FL K+ H+GN + ++K
Sbjct: 67 LTIPSKRWLVQDAEQQSFLLEKNHHYGNVHVVEK 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,852,509
Number of Sequences: 539616
Number of extensions: 4539334
Number of successful extensions: 10860
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10739
Number of HSP's gapped (non-prelim): 31
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)