Query 025183
Match_columns 256
No_of_seqs 157 out of 462
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 6E-85 2.1E-89 594.0 22.9 241 5-254 1-265 (285)
2 1uoc_A POP2; hydrolase, DEDD n 100.0 1.1E-83 3.6E-88 585.8 22.8 243 4-254 4-288 (289)
3 2d5r_A CCR4-NOT transcription 100.0 2E-83 6.8E-88 574.8 22.3 228 15-251 1-252 (252)
4 2p51_A SPCC18.06C protein; DED 100.0 3.9E-83 1.3E-87 589.6 23.2 243 2-254 9-275 (333)
5 3d45_A Poly(A)-specific ribonu 100.0 8.5E-53 2.9E-57 409.3 17.8 211 16-235 2-393 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 2.8E-45 9.6E-50 350.2 17.9 209 17-234 1-397 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.7 5.8E-08 2E-12 84.3 11.2 168 27-235 26-222 (235)
8 2f96_A Ribonuclease T; RNAse, 98.6 2.7E-07 9.1E-12 79.6 11.8 161 31-235 22-214 (224)
9 1w0h_A 3'-5' exonuclease ERI1; 98.6 6.1E-07 2.1E-11 75.7 13.2 154 39-235 11-196 (204)
10 2gui_A DNA polymerase III epsi 98.5 6.2E-07 2.1E-11 75.3 11.3 155 38-233 9-184 (194)
11 2p1j_A POLIII, DNA polymerase 98.5 8.4E-07 2.9E-11 74.4 12.0 148 35-233 9-175 (186)
12 1zbh_A 3'-5' exonuclease ERI1; 98.5 3.9E-06 1.3E-10 75.8 17.1 155 38-235 78-264 (299)
13 2xri_A ERI1 exoribonuclease 3; 98.4 6.9E-06 2.3E-10 70.9 15.3 151 39-234 32-214 (224)
14 1zbu_A ERI-1 homolog, 3'-5' ex 98.4 5.4E-06 1.8E-10 76.8 14.1 155 38-235 128-314 (349)
15 3mxm_B Three prime repair exon 98.4 3.6E-06 1.2E-10 73.8 12.2 86 138-235 119-216 (242)
16 3cg7_A CRN-4, cell death-relat 98.4 6.2E-06 2.1E-10 75.0 13.8 153 39-234 20-209 (308)
17 1y97_A Three prime repair exon 98.2 1.8E-05 6.2E-10 68.3 12.5 83 138-235 114-211 (238)
18 2qxf_A Exodeoxyribonuclease I; 98.1 1.6E-05 5.5E-10 76.7 12.2 158 35-233 6-200 (482)
19 1wlj_A Interferon stimulated g 98.1 9E-06 3.1E-10 68.3 8.5 79 137-235 83-170 (189)
20 2igi_A Oligoribonuclease; RNAs 98.1 6E-05 2.1E-09 62.3 13.2 144 37-235 4-178 (180)
21 3u3y_B Three prime repair exon 97.9 4.8E-05 1.6E-09 69.7 10.8 160 39-235 13-216 (314)
22 2gbz_A Oligoribonuclease; ORN, 97.8 0.00023 8E-09 59.9 12.4 77 139-235 106-182 (194)
23 3tr8_A Oligoribonuclease; tran 97.2 0.01 3.5E-07 50.0 14.0 79 136-237 103-184 (186)
24 2kfn_A Klenow fragment of DNA 97.0 0.022 7.4E-07 56.0 16.4 157 25-235 13-194 (605)
25 3saf_A Exosome component 10; e 95.3 0.7 2.4E-05 43.6 16.3 87 132-235 177-278 (428)
26 2e6m_A Werner syndrome ATP-dep 90.7 6.1 0.00021 32.5 13.3 87 132-235 91-196 (208)
27 4hec_A Putative uncharacterize 82.1 5.8 0.0002 33.3 8.3 74 137-232 106-180 (190)
28 2hbj_A Exosome complex exonucl 81.0 5.1 0.00017 37.3 8.3 87 132-235 154-255 (410)
29 1yt3_A Ribonuclease D, RNAse D 67.0 19 0.00065 32.6 8.2 87 132-235 69-171 (375)
30 1vk0_A Hypothetical protein; h 60.8 9.4 0.00032 32.1 4.6 159 19-232 25-205 (206)
31 1dny_A Non-ribosomal peptide s 40.7 27 0.00094 24.8 3.7 36 198-234 21-59 (91)
32 1x9m_A DNA polymerase; DNA plo 39.1 12 0.00043 37.0 2.1 86 136-235 52-184 (698)
33 4i4d_A Peptide synthetase NRPS 39.1 38 0.0013 24.0 4.3 36 198-234 23-61 (93)
34 3pv8_A DNA polymerase I; DNA p 34.5 45 0.0015 32.5 5.2 87 132-235 76-182 (592)
35 1vk0_A Hypothetical protein; h 30.0 17 0.00058 30.5 1.2 47 159-206 91-147 (206)
36 2gv9_A DNA polymerase; polymer 28.8 1.4E+02 0.0048 31.7 8.1 90 140-230 420-550 (1193)
37 4dfk_A DNA polymerase I, therm 24.4 1.1E+02 0.0037 29.4 5.9 71 138-234 57-128 (540)
38 2hbj_A Exosome complex exonucl 22.9 69 0.0024 29.5 4.1 26 25-50 93-118 (410)
39 2cg5_B Fatty acid synthase; tr 21.4 1.1E+02 0.0037 22.2 4.1 38 197-234 12-54 (91)
40 3cym_A Uncharacterized protein 21.4 2.3E+02 0.0079 26.2 7.4 80 136-234 92-187 (440)
41 2ogf_A Hypothetical protein MJ 21.3 45 0.0015 26.0 2.0 45 141-186 23-71 (122)
42 3h4q_A Putative acetyltransfer 20.8 63 0.0022 24.4 2.9 34 2-35 7-40 (188)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=6e-85 Score=593.98 Aligned_cols=241 Identities=44% Similarity=0.749 Sum_probs=224.3
Q ss_pred CCCCCCCCCceEEeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeee
Q 025183 5 PPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGL 84 (256)
Q Consensus 5 ~~~~~~~~~~~v~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGl 84 (256)
||+++.....+|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++||+++|+|||.+++||+||
T Consensus 1 ~p~~~~~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~-d~~Y~~lr~nvd~l~iIQlGL 79 (285)
T 4gmj_B 1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLGL 79 (285)
T ss_dssp ---------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTST-THHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCcCCCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCH-HHHHHHHHHHHHhhcceeEEE
Confidence 3455556678999999999999999999999999999999999999999998888887 999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCeeeEEEeeeecccccccCchhHHHHHHHcC------------------------ccccCCccE
Q 025183 85 TLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVTW 140 (256)
Q Consensus 85 t~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~~L~~~G------------------------lv~~~~v~W 140 (256)
|+|+++|+.|. .+++|||||+ |++++|+|+++||+||+++| ++++++++|
T Consensus 80 t~f~~~g~~p~-----~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~W 153 (285)
T 4gmj_B 80 TFMNEQGEYPP-----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKW 153 (285)
T ss_dssp EEECTTSCCCS-----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEE
T ss_pred EeeccCCCcCC-----CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCce
Confidence 99999999985 3789999999 99999999999999999999 678999999
Q ss_pred EeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCcchhhH
Q 025183 141 VTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDS 220 (256)
Q Consensus 141 vtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAGsds 220 (256)
|+|||+||||||+|+|||++||+++.+|+++++.+||. |||+|||++.|.++++||++||+.|+|+| +|++|||||||
T Consensus 154 vtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~-vYD~K~l~~~~~~l~ggL~~lA~~L~v~r-~g~~HqAGsDS 231 (285)
T 4gmj_B 154 LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDS 231 (285)
T ss_dssp EESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSC-EEEHHHHGGGSTTCCSCHHHHHHHTTCCC-CSCTTSHHHHH
T ss_pred EEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCch-hhhHHHHHHhccccCChHHHHHHhCCCCC-CCCCCcchhHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhcccceEecCCCC
Q 025183 221 LLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 254 (256)
Q Consensus 221 llT~~~F~kl~~~~~~~~~~~~~~~g~l~Gl~~~ 254 (256)
|||++||+|||+.+|++.++.++|+|+||||+..
T Consensus 232 llT~~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~ 265 (285)
T 4gmj_B 232 LLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSG 265 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHhcCCcchHHhCCEEeccCCC
Confidence 9999999999999998887778999999999864
No 2
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=1.1e-83 Score=585.82 Aligned_cols=243 Identities=34% Similarity=0.632 Sum_probs=216.4
Q ss_pred CCCCCCCCCCceEEeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeee
Q 025183 4 VPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIG 83 (256)
Q Consensus 4 ~~~~~~~~~~~~v~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlG 83 (256)
|+.+.|+...+.|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++||+++|+|||.+++||+|
T Consensus 4 ~~~~~p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-d~~Yq~lr~nVd~l~iIQlG 82 (289)
T 1uoc_A 4 PPIFLPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKV-DYHYQTMRANVDFLNPIQLG 82 (289)
T ss_dssp CCCCCCCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCH-HHHHHHHHHhhhhccceEEE
Confidence 44444455679999999999999999999999999999999999999999988888766 99999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCCeeeEEEeeeecccccccCchhHHHHHHHcC------------------------ccccCCcc
Q 025183 84 LTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVT 139 (256)
Q Consensus 84 lt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~~L~~~G------------------------lv~~~~v~ 139 (256)
||+|+++|+.|.. .+++|||||+ ||+.+|+|+++||+||+++| ||++++|+
T Consensus 83 Lt~~~~~g~~p~~----~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~ 157 (289)
T 1uoc_A 83 LSLSDANGNKPDN----GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVT 157 (289)
T ss_dssp EEEECTTCCCCSS----SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSE
T ss_pred EEEEccCCCcCCC----CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCce
Confidence 9999999999853 3789999999 99999999999999999999 78899999
Q ss_pred EEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCC---------------cHHHHHHHc
Q 025183 140 WVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYG---------------GLDRVCKAL 204 (256)
Q Consensus 140 Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~---------------gL~~vA~~L 204 (256)
||||||+||||||+|+|||++||+++.+|.+.++.+||. +||+|||++.|.++++ ||++||+.|
T Consensus 158 Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~-iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L 236 (289)
T 1uoc_A 158 WITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN-FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADEL 236 (289)
T ss_dssp EEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSS-EEEHHHHHHHHTTTCC-------------CCSHHHHHHHT
T ss_pred EEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCcc-ceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHc
Confidence 999999999999999999999999999999999999998 9999999999987766 699999999
Q ss_pred CCcccCCCCCcchhhHHHHHHHHHHHHHhhCC---CchhhhcccceEecCCCC
Q 025183 205 GVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG---NEYELQKYANVLHGLELL 254 (256)
Q Consensus 205 ~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~~---~~~~~~~~~g~l~Gl~~~ 254 (256)
||+| +|.+|||||||+||++||+||++.+|. +..+.++|+|+||||+.+
T Consensus 237 ~v~r-~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 237 GLPR-FSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp TCCC-CGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred CCCc-cCcccccHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 9999 999999999999999999999999873 334568999999999875
No 3
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=2e-83 Score=574.84 Aligned_cols=228 Identities=46% Similarity=0.801 Sum_probs=219.5
Q ss_pred eEEeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCC
Q 025183 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLP 94 (256)
Q Consensus 15 ~v~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p 94 (256)
.|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++|||++|+|||.+++||+|||+++++|+.|
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~-~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p 79 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYP 79 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHH-HHHHHHHHHHHTTCCCCEEEEEEECTTSCCC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCH-HHHHHHHHHhhhhcceeEEEEEEEccCCCCC
Confidence 489999999999999999999999999999999999999988888776 9999999999999999999999999999998
Q ss_pred CCCCCCCeeeEEEeeeecccccccCchhHHHHHHHcC------------------------ccccCCccEEeecchhhHH
Q 025183 95 DLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVTWVTFHSAYDFG 150 (256)
Q Consensus 95 ~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~~L~~~G------------------------lv~~~~v~Wvtfhg~yDf~ 150 (256)
. .+++|||||+ |++.+|+|+++||+||+++| ||++++|+||||||+||||
T Consensus 80 ~-----~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~ 153 (252)
T 2d5r_A 80 P-----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFG 153 (252)
T ss_dssp S-----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHH
T ss_pred C-----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHH
Confidence 5 3789999999 99999999999999999999 7889999999999999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHH
Q 025183 151 YLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 230 (256)
Q Consensus 151 yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl 230 (256)
||+|+|||++||+++++|.++++.+||. +||||||++.|.++++||++||+.|||+| +|++|||||||+||++||+||
T Consensus 154 yL~k~L~~~~LP~~~~~F~~~l~~~FP~-iyD~K~l~~~~~~l~~gL~~la~~L~v~r-~g~~HqAGsDsllT~~~F~km 231 (252)
T 2d5r_A 154 YLIKILTNSNLPEEELDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKM 231 (252)
T ss_dssp HHHHHHHTSCCCSSHHHHHHHHHHHCSC-EEEHHHHGGGCTTCCSSHHHHHHHHTCCC-CSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHCcc-hhhHHHHHHHhcccCCCHHHHHHHcCCCc-cCcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999997 99999999999999999999999999999 999999999999999999999
Q ss_pred HHhhCCCchhhhcccceEecC
Q 025183 231 KDKHFGNEYELQKYANVLHGL 251 (256)
Q Consensus 231 ~~~~~~~~~~~~~~~g~l~Gl 251 (256)
++.+|++.++.++++|+||||
T Consensus 232 ~~~~f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 232 REMFFEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp HHHTSCSSCCHHHHTTBCTTC
T ss_pred HHHhcCCCCCHHHcCCEecCC
Confidence 999998876678999999997
No 4
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=3.9e-83 Score=589.60 Aligned_cols=243 Identities=42% Similarity=0.706 Sum_probs=222.6
Q ss_pred CCCCCCCCCCCCceEEeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceee
Q 025183 2 SDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQ 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~v~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQ 81 (256)
|.-..|+++...+.|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++|||+||+|||.+++||
T Consensus 9 ~~~~~~~~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-e~~Yq~lR~NVd~l~iIQ 87 (333)
T 2p51_A 9 PALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSD-DYHYQTLRANVDSLKIIQ 87 (333)
T ss_dssp ---------CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSH-HHHHHHHHHHHHHSCCCE
T ss_pred CccccCCCCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCH-HHHHHHHHHhhhhccceE
Confidence 3334566677889999999999999999999999999999999999999999998888876 999999999999999999
Q ss_pred eeeeeecCCCCCCCCCCCCCeeeEEEeeeecccccccCchhHHHHHHHcC------------------------ccccCC
Q 025183 82 IGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKD 137 (256)
Q Consensus 82 lGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~~L~~~G------------------------lv~~~~ 137 (256)
+|||+|+++|+.|. .+++|||||+ |++.+|+|+++||+||+++| ||++++
T Consensus 88 lGLt~fd~~G~~p~-----~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~ 161 (333)
T 2p51_A 88 IGLALSDEEGNAPV-----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEE 161 (333)
T ss_dssp EEEEEECTTSCCCT-----TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTT
T ss_pred EEEEEEccCCCCCC-----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCC
Confidence 99999999999985 3799999999 99999999999999999999 788999
Q ss_pred ccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCcch
Q 025183 138 VTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAG 217 (256)
Q Consensus 138 v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAG 217 (256)
|+||+|||+||||||+|+|||++||+++++|.++++.+||. |||||||++.|.++++||++||+.|+|+| +|.+||||
T Consensus 162 V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~-iYD~K~l~~~~~~l~ggL~~lA~~L~v~R-ig~~HqAG 239 (333)
T 2p51_A 162 VTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPK-NYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAG 239 (333)
T ss_dssp CEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSS-EEEHHHHHTTTTCCCCCHHHHHHHTTCCC-CSCTTSHH
T ss_pred ceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcc-hhhHHHHHHHhccccCCHHHHHHHcCCCc-cCcchhhh
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999999 99999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCchhhhcccceEecCCCC
Q 025183 218 SDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 254 (256)
Q Consensus 218 sdsllT~~~F~kl~~~~~~~~~~~~~~~g~l~Gl~~~ 254 (256)
||||||++||+||++.+|++. +.++++|+||||+..
T Consensus 240 sDSlLT~~~F~kl~~~~f~~~-~~~~~~g~l~Gl~~~ 275 (333)
T 2p51_A 240 SDALLTARIFFEIRSRYFDGS-IDSRMLNQLYGLGST 275 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-CCGGGTTCCTTC---
T ss_pred hHHHHHHHHHHHHHHHhcCCC-chhhhCCEEeccCcC
Confidence 999999999999999999765 468999999999875
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=8.5e-53 Score=409.29 Aligned_cols=211 Identities=20% Similarity=0.218 Sum_probs=180.0
Q ss_pred EEeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCCC----CCCCChhhhHHHHHhcccccceeeeeeeeecCCC
Q 025183 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSN----IRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEG 91 (256)
Q Consensus 16 v~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~----~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g 91 (256)
|+|||++||+++|+.|+++|++|+||||||||||++.+|.+. +.++. ++||+++|+||+.+++||+|||+|+++|
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~-~~~Y~~~r~~v~~~~iiQlGlt~f~~~~ 80 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTP-EERYQKLKKHSMDFLLFQFGLCAFKYDH 80 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCH-HHHHHHHHHHHTTBCEEEEEEEEEEECS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCH-HHHHHHHHHHHHhcccceEEEEEEecCC
Confidence 689999999999999999999999999999999999887642 24454 9999999999999999999999999999
Q ss_pred CCCCCCCCCCeeeEEEeeeeccc-----cc---ccCchhHHHHHHHcC-------------------------c------
Q 025183 92 NLPDLGSGSTYYIWEFNFKDFDI-----AR---HAHALDSVELLKRQG-------------------------L------ 132 (256)
Q Consensus 92 ~~p~~~~~~~~~~wqFNF~~F~~-----~~---d~~~~~Si~~L~~~G-------------------------l------ 132 (256)
+.+ .+++|+|||+.|+. .. ++|+++||+||+++| +
T Consensus 81 ~~~------~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~ 154 (507)
T 3d45_A 81 TDS------KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQ 154 (507)
T ss_dssp SSS------CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC----
T ss_pred CCC------ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhh
Confidence 865 48999999999886 33 499999999999999 0
Q ss_pred ----------------------------------------c----ccC--------------------------------
Q 025183 133 ----------------------------------------V----LNK-------------------------------- 136 (256)
Q Consensus 133 ----------------------------------------v----~~~-------------------------------- 136 (256)
+ +|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i 234 (507)
T 3d45_A 155 ANGAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHI 234 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeE
Confidence 0 111
Q ss_pred -----------------------------------------CccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhh
Q 025183 137 -----------------------------------------DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVF 175 (256)
Q Consensus 137 -----------------------------------------~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~ 175 (256)
+..||+||+.|||+||++.++ +|||++.++|.+.++.+
T Consensus 235 ~v~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~l 313 (507)
T 3d45_A 235 VISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICV 313 (507)
T ss_dssp -----------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHh
Confidence 467999999999999999999 59999999999999999
Q ss_pred cCCcccchhHHHHhh--ccC--CCcHHHHHHHcC-----Ccc------------cCCCCCcchhhHHHHHHHHHHHHHhh
Q 025183 176 FGEKVYDVKHLIRFC--TCL--YGGLDRVCKALG-----VER------------VVGKSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 176 Fp~~vyD~K~la~~~--~~l--~~gL~~vA~~L~-----v~r------------~~g~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
||. |||||||++.. ..+ .++|+++++.|+ +++ ..|..||||+||+||+.||++|+..+
T Consensus 314 FP~-i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 314 FPR-LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp CSC-EEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-eeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999873 333 678999999997 333 14678999999999999999999887
Q ss_pred C
Q 025183 235 F 235 (256)
Q Consensus 235 ~ 235 (256)
.
T Consensus 393 ~ 393 (507)
T 3d45_A 393 G 393 (507)
T ss_dssp C
T ss_pred h
Confidence 4
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=2.8e-45 Score=350.17 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=175.6
Q ss_pred EeccccCHHHHHHHHHHHhhcCCeeEEeeccccccccCCC----CCCCCChhhhHHHHHhcccccceeeeeeeeecCCCC
Q 025183 17 REVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDS----NIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGN 92 (256)
Q Consensus 17 ~dVw~~N~~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~----~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~ 92 (256)
.|||++||++.|+.|+++|++|+||||||||||++.+|.. ....+. ++||+++|+||+.+++||+|||+|+++|+
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~-e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~ 79 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTP-EERYQKLKKHSMDFLLFQFGLCTFKYDYT 79 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCH-HHHHHHHHHHTTTBCEEEEEEEEEEEETT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCH-HHHHHHHHHHHhhcceeeEEEEEEeecCC
Confidence 4899999999999999999999999999999999998863 122344 99999999999999999999999999998
Q ss_pred CCCCCCCCCeeeEEEeeeec----cc----ccccCchhHHHHHHHcC-------------------------c-------
Q 025183 93 LPDLGSGSTYYIWEFNFKDF----DI----ARHAHALDSVELLKRQG-------------------------L------- 132 (256)
Q Consensus 93 ~p~~~~~~~~~~wqFNF~~F----~~----~~d~~~~~Si~~L~~~G-------------------------l------- 132 (256)
.+ .+++|||||++| ++ .+++|+++||+||+++| +
T Consensus 80 ~~------~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~ 153 (430)
T 2a1r_A 80 DS------KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQA 153 (430)
T ss_dssp TT------EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC----------
T ss_pred CC------ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhh
Confidence 75 489999999999 43 25899999999999999 0
Q ss_pred --------cc------------------------------cC--------------------------------------
Q 025183 133 --------VL------------------------------NK-------------------------------------- 136 (256)
Q Consensus 133 --------v~------------------------------~~-------------------------------------- 136 (256)
+. ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~ 233 (430)
T 2a1r_A 154 NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETE 233 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeec
Confidence 00 00
Q ss_pred -----------------------------------CccE------------EeecchhhHHHHHHHhcCCCCCCChHHHH
Q 025183 137 -----------------------------------DVTW------------VTFHSAYDFGYLVKCLTQRVLPEKLSEFV 169 (256)
Q Consensus 137 -----------------------------------~v~W------------vtfhg~yDf~yL~k~l~~~~LP~~~~~F~ 169 (256)
..+| |.|++.+|+.|+++.+.| |||++.++|.
T Consensus 234 ~~~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~-pLP~~~~eFk 312 (430)
T 2a1r_A 234 KKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYC-PLPADLSEFK 312 (430)
T ss_dssp -----------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTC-CCCSSHHHHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhcc-CCCCCHHHHH
Confidence 0113 778889999999999995 9999999999
Q ss_pred HHHHhhcCCcccchhHHHHhhc--cC--CCcHHHHHHHcCCcc-----------------cCCCCCcchhhHHHHHHHHH
Q 025183 170 TRVGVFFGEKVYDVKHLIRFCT--CL--YGGLDRVCKALGVER-----------------VVGKSHQAGSDSLLTLHAFL 228 (256)
Q Consensus 170 ~~l~~~Fp~~vyD~K~la~~~~--~l--~~gL~~vA~~L~v~r-----------------~~g~~hqAGsdsllT~~~F~ 228 (256)
+.++.+||. |||||||++.++ .+ ..+|+.+.+.|.-.. ..+..|+||+||++|+.||.
T Consensus 313 ~~i~~lFP~-i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi 391 (430)
T 2a1r_A 313 EMTTCVFPR-LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFI 391 (430)
T ss_dssp HHHHHHCSS-EEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCc-eeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHH
Confidence 999999999 999999998864 12 357999999885321 14678999999999999999
Q ss_pred HHHHhh
Q 025183 229 KIKDKH 234 (256)
Q Consensus 229 kl~~~~ 234 (256)
+|+..+
T Consensus 392 ~l~~~l 397 (430)
T 2a1r_A 392 SMANYL 397 (430)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.75 E-value=5.8e-08 Score=84.27 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeec--CCCCCCCCCCCCCeee
Q 025183 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSD--EEGNLPDLGSGSTYYI 104 (256)
Q Consensus 27 e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~--~~g~~p~~~~~~~~~~ 104 (256)
++..+..-++...||++|+|.+|+... .-.|||+|+..++ ++|+.. ..
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~----------------------~~~IieIgav~~~~~~~g~i~--------~~ 75 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK----------------------TDALLEIAAITLKMDEQGWLM--------PD 75 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT----------------------TBCEEEEEEEEEEECTTSCEE--------EE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC----------------------CCeEEEEEEEEEEEcCCCccc--------cc
Confidence 444566678889999999999998321 1138999999876 456431 23
Q ss_pred EEEeeeecccc-cccCchhHHHH-------HHHcC------------ccc-------cCCccEEeecchhhHHHHHHHhc
Q 025183 105 WEFNFKDFDIA-RHAHALDSVEL-------LKRQG------------LVL-------NKDVTWVTFHSAYDFGYLVKCLT 157 (256)
Q Consensus 105 wqFNF~~F~~~-~d~~~~~Si~~-------L~~~G------------lv~-------~~~v~Wvtfhg~yDf~yL~k~l~ 157 (256)
-+|+.. .+.. ....++.+.+. +.+.| .+. .++..+|++++.||+.+|-+.+.
T Consensus 76 ~~f~~~-v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~ 154 (235)
T 3v9w_A 76 TTLHFH-VEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAE 154 (235)
T ss_dssp EEEEEE-BCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHH
T ss_pred ceEEEE-ECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHH
Confidence 456555 3321 11222222211 00111 111 13567888889999999987765
Q ss_pred CCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 158 QRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 158 ~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
...++.. -+.+..++|+..+++.... ..+|+.+++.+|++...+..|.|..|+..|+++|.+|.+++.
T Consensus 155 ~~g~~~~---------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 155 RASLKRN---------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HTTCCCC---------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCC---------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 3222210 0112237899888887532 248999999999987224789999999999999999998864
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.63 E-value=2.7e-07 Score=79.59 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=102.6
Q ss_pred HHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecC--CCCCCCCCCCCCeeeEEEe
Q 025183 31 IRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE--EGNLPDLGSGSTYYIWEFN 108 (256)
Q Consensus 31 I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~--~g~~p~~~~~~~~~~wqFN 108 (256)
+.+-+++..||++|+|.+|+... .-.|||+|+..++. +|+.. ..-+|+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~----------------------~~~IieIg~v~~~~~~~g~i~--------~~~~f~ 71 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA----------------------TDALLEIAATTVGMDEKGFLF--------PEHTYF 71 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT----------------------TBCEEEEEEEEEEECTTSCEE--------EEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC----------------------CCeeEEEEEEEEEEcCCCccc--------ccceEE
Confidence 45567788999999999997311 12499999999873 56421 234566
Q ss_pred eeecccc-cccCchhHHH-------------------------HHHHcCccc---cCCccEEeecchhhHHHHHHHhcCC
Q 025183 109 FKDFDIA-RHAHALDSVE-------------------------LLKRQGLVL---NKDVTWVTFHSAYDFGYLVKCLTQR 159 (256)
Q Consensus 109 F~~F~~~-~d~~~~~Si~-------------------------~L~~~Glv~---~~~v~Wvtfhg~yDf~yL~k~l~~~ 159 (256)
.. .+.. ....++.+.+ +|.+. +. .++...|++++.+|+.+|.+.+...
T Consensus 72 ~l-V~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v~~~~~~~l~~~--~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~ 148 (224)
T 2f96_A 72 FR-IEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKA--LKANGCKRAILVGHNSSFDLGFLNAAVART 148 (224)
T ss_dssp EE-BCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHHHHHHHHH--HHHTTCSEEEEEETTHHHHHHHHHHHHHHH
T ss_pred EE-ECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHH--hhhcccCCCEEEEeChhhhHHHHHHHHHHc
Confidence 55 3221 1122222222 11110 00 1234678888899999998876522
Q ss_pred CCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCC-CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 160 VLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVG-KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 160 ~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g-~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
.++.. -+.+..++|+..+++..-. ..+|+.+++.+|++. .+ ..|.|-.|++.|+++|.+|.+.+-
T Consensus 149 g~~~~---------p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 149 GIKRN---------PFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEF-DNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TCCCC---------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCC-CTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcC---------CccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCc-CCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 22200 0112237899888876432 247999999999986 44 689999999999999999988753
No 9
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.61 E-value=6.1e-07 Score=75.73 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=100.0
Q ss_pred CeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCCeeeEEEeeeeccccc-
Q 025183 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIAR- 116 (256)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~- 116 (256)
.||++|+|.+|+..... ...-.|||+|...++. +|+. .-+|+.. .+...
T Consensus 11 ~~vviD~ETTGl~~~~~------------------~~~~~Iieigav~~~~~~g~i----------~~~f~~l-v~P~~~ 61 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLEI----------EDTFQQY-VRPEIN 61 (204)
T ss_dssp EEEECCCEECCCTTCCT------------------TSCCCEEEEEEEEEETTTCSE----------EEEEEEE-BCCSSS
T ss_pred EEEEEEEecCCcCCCCC------------------CCCCcEEEEEEEEEECCCCEE----------eeeeeeE-ECCCCC
Confidence 68999999999743210 0112499999999985 6642 2356665 33332
Q ss_pred ccCchhHHHH-------HHHcC------------ccc-----cCCccEEeecchhhHH-HHHHHhc--CCCCCCChHHHH
Q 025183 117 HAHALDSVEL-------LKRQG------------LVL-----NKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEKLSEFV 169 (256)
Q Consensus 117 d~~~~~Si~~-------L~~~G------------lv~-----~~~v~Wvtfhg~yDf~-yL~k~l~--~~~LP~~~~~F~ 169 (256)
...++.+.+. |+ .+ ++. .+....|++++.+|+. +|-+.+. |-++|.
T Consensus 62 ~~i~~~~~~i~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~------ 134 (204)
T 1w0h_A 62 TQLSDFCISLTGITQDQVD-RADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP------ 134 (204)
T ss_dssp CSCCHHHHHHHCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG------
T ss_pred CccCHHHHHHhCCCHHHHh-CCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc------
Confidence 1333333222 11 11 011 1122478888999997 9887764 334332
Q ss_pred HHHHhhcCCcccchhHHHHhhccC---CCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 170 TRVGVFFGEKVYDVKHLIRFCTCL---YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 170 ~~l~~~Fp~~vyD~K~la~~~~~l---~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
++.. ++|++.+++..-.. ..+|+.+++.+|++. .|..|.|-.|+..|+++|.+|.+...
T Consensus 135 -----~~~~-~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 135 -----FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp -----GGSE-EEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----cccc-eEEHHHHHHHHhCCCCccchHHHHHHHcCCCC-CCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 2224 88998887764222 257999999999998 77889999999999999999988643
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.54 E-value=6.2e-07 Score=75.33 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=96.1
Q ss_pred CCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCCeeeEEEeeeecccccc
Q 025183 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARH 117 (256)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d 117 (256)
.+||++|+|.+|+.... . | -+.-.|||+|...++ +|+.- .-.|+.. .+...
T Consensus 9 ~~~vviD~ETTGl~~~~---------~--~------~~~~~Iieig~v~~~-~~~~~---------~~~f~~l-v~P~~- 59 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG---------A--H------YEGHKIIEIGAVEVV-NRRLT---------GNNFHVY-LKPDR- 59 (194)
T ss_dssp CEEEEEEEEESCCCSSS---------S--T------TTTCCEEEEEEEEEE-TTEEC---------SCCEEEE-CCCSS-
T ss_pred CCEEEEEeeCCCCCCcc---------c--C------CCCCEEEEEEEEEEE-CCeEe---------ccEEEEE-ECcCC-
Confidence 47999999999984320 0 0 011249999999887 34321 0124444 33322
Q ss_pred cCchhHHHH-------HHHcC--------c--cccCCccEEeecchhhHHHHHHHhc--CCCCCCChHHHHHHHHhhcCC
Q 025183 118 AHALDSVEL-------LKRQG--------L--VLNKDVTWVTFHSAYDFGYLVKCLT--QRVLPEKLSEFVTRVGVFFGE 178 (256)
Q Consensus 118 ~~~~~Si~~-------L~~~G--------l--v~~~~v~Wvtfhg~yDf~yL~k~l~--~~~LP~~~~~F~~~l~~~Fp~ 178 (256)
..++.+.+. |++.. + .+ .+-.+|++++.+|+.+|-+.+. |.++|. .. .+ .
T Consensus 60 ~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~-~ 128 (194)
T 2gui_A 60 LVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TF-C 128 (194)
T ss_dssp CCCHHHHHHHCCCHHHHTTSCCHHHHHHHHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GT-S
T ss_pred cCCHHHHHhhCcCHHHHhCCCCHHHHHHHHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------cc-C
Confidence 223322221 11111 0 11 2335788889999999988765 344442 10 01 2
Q ss_pred cccchhHHHHhh-ccCCCcHHHHHHHcCCcccCC-CCCcchhhHHHHHHHHHHHHHh
Q 025183 179 KVYDVKHLIRFC-TCLYGGLDRVCKALGVERVVG-KSHQAGSDSLLTLHAFLKIKDK 233 (256)
Q Consensus 179 ~vyD~K~la~~~-~~l~~gL~~vA~~L~v~r~~g-~~hqAGsdsllT~~~F~kl~~~ 233 (256)
.++|+..+++.. ++...+|+.+++.+|++. .+ ..|.|-+|+..|+++|.+|.+.
T Consensus 129 ~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 129 KVTDSLAVARKMFPGKRNSLDALCARYEIDN-SKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp EEEEHHHHHHHHSTTSCCSHHHHHHHTTCCC-TTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred ceeeHHHHHHHHcCCCCCCHHHHHHHcCcCC-CCCCCCChHHHHHHHHHHHHHHHhc
Confidence 378887776653 344568999999999998 66 5899999999999999998764
No 11
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.54 E-value=8.4e-07 Score=74.39 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=93.9
Q ss_pred hhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCCeeeEEEeeeeccc
Q 025183 35 IDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDI 114 (256)
Q Consensus 35 i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~ 114 (256)
+...+||++|+|.+|+... . -.|||+|...++ +|+ ..-+|+.. .+.
T Consensus 9 l~~~~~v~iD~ETTGl~~~-------~---------------~~IieIg~v~~~-~g~----------i~~~f~~l-v~P 54 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ-------V---------------DEIIEIGAVKIQ-GGQ----------IVDEYHTL-IKP 54 (186)
T ss_dssp ----CEEEEEEEESCSCTT-------T---------------CCEEEEEEEEEE-TTE----------EEEEEEEE-CBC
T ss_pred CcCCCEEEEEEECCCCCCC-------C---------------CeEEEEEEEEEE-CCE----------EEEEEEEE-ECc
Confidence 4567999999999997311 0 138999998876 443 22346655 333
Q ss_pred ccccCchhHHHH-------HHHcC--------c-cccCCccEEeecchhhHHHHHHHhc--CCCCCCChHHHHHHHHhhc
Q 025183 115 ARHAHALDSVEL-------LKRQG--------L-VLNKDVTWVTFHSAYDFGYLVKCLT--QRVLPEKLSEFVTRVGVFF 176 (256)
Q Consensus 115 ~~d~~~~~Si~~-------L~~~G--------l-v~~~~v~Wvtfhg~yDf~yL~k~l~--~~~LP~~~~~F~~~l~~~F 176 (256)
.. ..++.+.+. |++.- + -.-.+-..|++++.+|+.+|.+.+. |.+.|
T Consensus 55 ~~-~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~-------------- 119 (186)
T 2p1j_A 55 SR-EISRKSSEITGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDW-------------- 119 (186)
T ss_dssp SS-CCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCC--------------
T ss_pred CC-CCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCC--------------
Confidence 22 222222221 11100 0 0012346788889999999988764 23322
Q ss_pred CCcccchhHHHHhhccC-CCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHh
Q 025183 177 GEKVYDVKHLIRFCTCL-YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDK 233 (256)
Q Consensus 177 p~~vyD~K~la~~~~~l-~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~ 233 (256)
+..++|+..+++...+. ..+|+.+++.+|++. .+ .|.|-.|+..|+++|.+|.+.
T Consensus 120 ~~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~-~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 120 ERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGP-FR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp CCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCS-TT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCC-CC-CcCHHHHHHHHHHHHHHHHHH
Confidence 22378998887765422 457999999999987 44 699999999999999998765
No 12
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.53 E-value=3.9e-06 Score=75.80 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=100.9
Q ss_pred CCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCCeeeEEEeeeeccccc
Q 025183 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (256)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (256)
-.||+||+|.+|+...+. ...-.|||+|...++. +|+ ..-+|+.. .+...
T Consensus 78 ~~~vviD~ETTGl~~~~~------------------~~~~~IIeIgaV~v~~~~g~----------i~~~f~~l-V~P~~ 128 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLE----------IEDTFQQY-VRPEI 128 (299)
T ss_dssp SEEEEECCEECCCTTCCT------------------TCCCCEEEEEEEEEETTTCC----------EEEEEEEE-BCCSS
T ss_pred ceEEEEEeecccCCCCCC------------------CCCCceEEEEEEEEECCCCe----------Eeeeeeee-ecCCC
Confidence 368999999999843210 0112499999999986 353 23356665 33322
Q ss_pred c-cCchhHHHH------------------------HHHcCccccCCccEEeecchhhHH-HHHHHhc--CCCCCCChHHH
Q 025183 117 H-AHALDSVEL------------------------LKRQGLVLNKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEKLSEF 168 (256)
Q Consensus 117 d-~~~~~Si~~------------------------L~~~Glv~~~~v~Wvtfhg~yDf~-yL~k~l~--~~~LP~~~~~F 168 (256)
. ...+.+.+. |...++ -.+....|++++.+|+. +|-+.+. |.++|.
T Consensus 129 ~~~i~~~~~~ihGIt~e~v~~ap~~~evl~~f~~~l~~~~~-~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~----- 202 (299)
T 1zbh_A 129 NTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP----- 202 (299)
T ss_dssp SCSCCHHHHHHHCCCHHHHHTSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----
T ss_pred CCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHHhhccc-CCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----
Confidence 1 233333222 222111 01114678899999999 9987754 344442
Q ss_pred HHHHHhhcCCcccchhHHHHhhccCC---CcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 169 VTRVGVFFGEKVYDVKHLIRFCTCLY---GGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 169 ~~~l~~~Fp~~vyD~K~la~~~~~l~---~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
++.. ++|++.+.....+.. .+|+.+++.+|++. .|..|.|-.|++.|+++|.+|.+...
T Consensus 203 ------~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 203 ------FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp ------GGSE-EEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------ccch-HHHHHHHHHHHhCCCCCCccHHHHHHHcCCCC-CCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 1223 789987766542232 47999999999998 78899999999999999999988753
No 13
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.43 E-value=6.9e-06 Score=70.91 Aligned_cols=151 Identities=14% Similarity=0.152 Sum_probs=95.7
Q ss_pred CeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCC-CCCCCCCCCCCeeeEEEeeeeccccc-
Q 025183 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEE-GNLPDLGSGSTYYIWEFNFKDFDIAR- 116 (256)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~-g~~p~~~~~~~~~~wqFNF~~F~~~~- 116 (256)
.||++|+|.+|+.... +.-.|||+|...++.. |+ ..-+|+.. .+...
T Consensus 32 ~~vviD~ETTGl~~~~--------------------d~~~IieIgav~v~~~~~~----------i~~~f~~l-V~P~~~ 80 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI--------------------HPQEIIEFPILKLNGRTME----------IESTFHMY-VQPVVH 80 (224)
T ss_dssp EEEEECCEECCCC-CC--------------------SSCCEEEEEEEEEETTTCC----------EEEEEEEE-CCCSSS
T ss_pred eEEEEEEEcCCCCCCC--------------------CCcceEEEEEEEEecCCcE----------EeeeeeeE-ECCCCC
Confidence 5999999999973210 1124999999988854 33 23346655 32222
Q ss_pred ccCchh------------------------HHHHHHHcCccc-cCCccEEeecchhhHHHHH-HHhc--CCCCCCChHHH
Q 025183 117 HAHALD------------------------SVELLKRQGLVL-NKDVTWVTFHSAYDFGYLV-KCLT--QRVLPEKLSEF 168 (256)
Q Consensus 117 d~~~~~------------------------Si~~L~~~Glv~-~~~v~Wvtfhg~yDf~yL~-k~l~--~~~LP~~~~~F 168 (256)
...++. -.++|....+|- |....|++. |.+|+.+|+ +.+. |-++|.
T Consensus 81 ~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~----- 154 (224)
T 2xri_A 81 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD----- 154 (224)
T ss_dssp CSCCHHHHHHHCCCHHHHTTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG-----
T ss_pred CcCCHHHHHHhCcCHHHHcCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc-----
Confidence 122222 223344433332 334567777 599999865 3332 444442
Q ss_pred HHHHHhhcCCcccchhHHHHhhccC--CCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhh
Q 025183 169 VTRVGVFFGEKVYDVKHLIRFCTCL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 169 ~~~l~~~Fp~~vyD~K~la~~~~~l--~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
+|.. .+|++...+....+ ..+|..+++.+|++. .|..|.|-.|+..|+++|.+|.++.
T Consensus 155 ------~~~~-~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~-~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 155 ------YFKQ-WINLKKAYSFAMGCWPKNGLLDMNKGLSLQH-IGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp ------GGSC-EEEHHHHHHHHHTSCCTTTHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------cccc-eEeHHHHHHHHhccCCCCCHHHHHHHcCCCC-CCCCcChHHHHHHHHHHHHHHHHcC
Confidence 1224 78876544433222 257999999999997 7889999999999999999998763
No 14
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.37 E-value=5.4e-06 Score=76.85 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=100.0
Q ss_pred CCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCCeeeEEEeeeeccccc
Q 025183 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (256)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (256)
-.||+||+|.+|+...+. ...-.|||||+..++. +|+ ..-.|+.. .+...
T Consensus 128 ~~~vviD~ETTGl~~~~~------------------~~~deIIEIgaV~vd~~~g~----------i~~~f~~l-VkP~~ 178 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLE----------IEDTFQQY-VRPEI 178 (349)
T ss_dssp SEEEECCCEECCCTTCCT------------------TCCCCEEECCEEEEETTTTE----------EEEEECCB-EECSS
T ss_pred CeEEEEEEecCCCCCcCC------------------CCCCeEEEEEEEEEECCCce----------EeEEEEEE-ECCCC
Confidence 368999999999843210 0112499999999985 343 23355555 33222
Q ss_pred c-cCchhHHH------------------------HHHHcCccccCCccEEeecchhhHH-HHHHHhc--CCCCCCChHHH
Q 025183 117 H-AHALDSVE------------------------LLKRQGLVLNKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEKLSEF 168 (256)
Q Consensus 117 d-~~~~~Si~------------------------~L~~~Glv~~~~v~Wvtfhg~yDf~-yL~k~l~--~~~LP~~~~~F 168 (256)
. ...+.+.+ +|...++ -.+....|++++.+|+. +|-+.+. |.++|.
T Consensus 179 ~~~I~~~~t~ihGIT~e~v~~ap~~~eVl~~f~~~l~~~~~-~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~----- 252 (349)
T 1zbu_A 179 NTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP----- 252 (349)
T ss_dssp SCSCCHHHHHHHCCCHHHHHTSEEHHHHHHHHHHHHHHTTB-TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----
T ss_pred CCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHHhcccc-cCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----
Confidence 1 23333322 2222211 00114678888999999 9887654 344442
Q ss_pred HHHHHhhcCCcccchhHHHHhhccCC---CcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 169 VTRVGVFFGEKVYDVKHLIRFCTCLY---GGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 169 ~~~l~~~Fp~~vyD~K~la~~~~~l~---~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
++-. +.|++.+.....++. .+|..+++.+|++. .|..|.|-.|++.|+++|.+|.+...
T Consensus 253 ------~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 253 ------FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp ------GGSE-EEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------ccch-HHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1223 789987766543332 47999999999998 78889999999999999999988753
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.37 E-value=3.6e-06 Score=73.85 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred ccEEeecc-hhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhc---------cC-CCcHHHHHHH-cC
Q 025183 138 VTWVTFHS-AYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT---------CL-YGGLDRVCKA-LG 205 (256)
Q Consensus 138 v~Wvtfhg-~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~---------~l-~~gL~~vA~~-L~ 205 (256)
..+|++++ .||+.+|-+.+....+|.. .-+..++|+-.+++... .. +-+|+.+++. +|
T Consensus 119 ~~lVaHNav~FD~~fL~~~~~r~g~~~~----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~g 188 (242)
T 3mxm_B 119 CCLVAHNGDRYDFPLLQTELARLSTPSP----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 188 (242)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSSSCCT----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHS
T ss_pred CEEEEcCChHhhHHHHHHHHHHcCCCCC----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhC
Confidence 57899998 9999999998864333311 00112677777666421 11 3479999977 99
Q ss_pred CcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 206 VERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 206 v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
++. . ..|.|-+|++.|+++|.++.+.+.
T Consensus 189 i~~-~-~~H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 189 QAP-T-DSHTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp SCC-S-STTSHHHHHHHHHHHHTSSHHHHH
T ss_pred CCC-C-CCcChHHHHHHHHHHHHHHHHHHH
Confidence 987 3 479999999999999999988875
No 16
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.35 E-value=6.2e-06 Score=74.99 Aligned_cols=153 Identities=15% Similarity=0.209 Sum_probs=98.1
Q ss_pred CeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCCeeeEEEeeeecccccc
Q 025183 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIARH 117 (256)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~d 117 (256)
.||+||+|.+|+.... + | .-.|||+|...++. +|+.- ..-+|+.. .+....
T Consensus 20 ~~vviD~ETTGl~~~~---------d--~--------~~eIIEIgaV~vd~~~g~i~--------~~~~f~~l-V~P~~~ 71 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ---------D--Y--------PCEVIQFAIVAYDVPNDKIR--------EDISFNKY-VKPVLN 71 (308)
T ss_dssp EEEEEEEEECCBTTBC---------S--C--------CCCEEEEEEEEEETTTTEEE--------EEEEEEEE-CBCSSB
T ss_pred eEEEEEeecCCCCCCC---------C--C--------CCCeEEEEEEEEEcCCCEEe--------eccceeeE-ECCCCC
Confidence 5899999999984321 0 0 12499999999985 55421 11246655 333322
Q ss_pred -cCchhHHH------------------------HHHHcCccccCCccEEeecchhhH-HHHHHHhc--CCCCCCChHHHH
Q 025183 118 -AHALDSVE------------------------LLKRQGLVLNKDVTWVTFHSAYDF-GYLVKCLT--QRVLPEKLSEFV 169 (256)
Q Consensus 118 -~~~~~Si~------------------------~L~~~Glv~~~~v~Wvtfhg~yDf-~yL~k~l~--~~~LP~~~~~F~ 169 (256)
..++.+.+ +|..+.+| ..++.|++ +|.+|+ .+|-+.+. |-++|.
T Consensus 72 p~i~~~~~~ltGIt~e~v~~ap~~~evl~~f~~~l~~~~lv-ahn~~lv~-~g~fD~~~fL~~~~~~~g~~~p~------ 143 (308)
T 3cg7_A 72 RTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLE-EGKFAFVC-DSRQDLWRIAQYQMKLSNIQMPA------ 143 (308)
T ss_dssp CSCCHHHHHHHCCCHHHHHTSCBHHHHHHHHHHHHHHHCCC-TTSEEEEE-SSSHHHHTHHHHHHHHTTCCCCG------
T ss_pred CCCCHHHHHHcCCCHHHHhcCCCHHHHHHHHHHHHHhCCcC-CcceEEec-cCcccHHHHHHHHHHHcCCCCch------
Confidence 13333222 22222222 35667766 478999 68876554 445543
Q ss_pred HHHHhhcCCcccchhHHHHhh-ccC-------CCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhh
Q 025183 170 TRVGVFFGEKVYDVKHLIRFC-TCL-------YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 170 ~~l~~~Fp~~vyD~K~la~~~-~~l-------~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
+|.. .+|++-+++.. +.. ..+|..+++.+|++. .|..|.|-.|+..|+++|.+|.+..
T Consensus 144 -----~~~~-~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 144 -----FFRQ-YINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPT-IGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp -----GGSE-EEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----hhcc-eeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCC-CCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 2223 77988777653 211 247999999999998 7888999999999999999998764
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.19 E-value=1.8e-05 Score=68.33 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=60.0
Q ss_pred ccEEeecc-hhhHHHHHHHhc--CCCCCCChHHHHHHHHhhcCCcccchhHHHHhhc----------cC-CCcHHHHHHH
Q 025183 138 VTWVTFHS-AYDFGYLVKCLT--QRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT----------CL-YGGLDRVCKA 203 (256)
Q Consensus 138 v~Wvtfhg-~yDf~yL~k~l~--~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~----------~l-~~gL~~vA~~ 203 (256)
..+|++++ .||+.+|-+.+. |.++|.. ..++|+..+++... +. ..+|+.+++.
T Consensus 114 ~~lVahN~~~FD~~fL~~~~~~~g~~~~~~-------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 114 ICLVAHNGFDYDFPLLCAELRRLGARLPRD-------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp EEEEETTTTTTHHHHHHHHHHHHTCCCCTT-------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred CEEEecCchhhhHHHHHHHHHHcCCCCCCC-------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 57899999 999999988764 3444421 22678866666542 22 3579999994
Q ss_pred -cCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 204 -LGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 204 -L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
+|++. ...|.|-.|++.|+++|.+|.+.++
T Consensus 181 ~~gi~~--~~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 181 YFRAEP--SAAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHSSCC--C---CHHHHHHHHHHHHHHTHHHHH
T ss_pred HhCCCC--ccCccHHHHHHHHHHHHHHHHHHHH
Confidence 99986 4579999999999999999988765
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.14 E-value=1.6e-05 Score=76.72 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=98.8
Q ss_pred hhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCCeeeEEEeeeeccc
Q 025183 35 IDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDI 114 (256)
Q Consensus 35 i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~ 114 (256)
+...+||++|+|.+|+... .-.|||+|...++.+|+.-. -.|+.. .+.
T Consensus 6 ~~~~~~vv~DlETTGl~p~----------------------~d~IIEIgaV~vd~~g~ii~---------~~f~~l-VkP 53 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA----------------------LDRPAQFAAIRTDSEFNVIG---------EPEVFY-CKP 53 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT----------------------TSCEEEEEEEEECTTSCBCS---------CCEEEE-BCC
T ss_pred CCCCCEEEEEEECCCCCCC----------------------CCeEEEEEEEEEECCCeEEe---------eeeEEE-ECC
Confidence 4567899999999998311 01499999999988776421 125655 444
Q ss_pred cccc-CchhHHH-------HHHHcCc-----------ccc-CCccEEeecc-hhhHHHHHHHhcCCCCCCChHHHHHHHH
Q 025183 115 ARHA-HALDSVE-------LLKRQGL-----------VLN-KDVTWVTFHS-AYDFGYLVKCLTQRVLPEKLSEFVTRVG 173 (256)
Q Consensus 115 ~~d~-~~~~Si~-------~L~~~Gl-----------v~~-~~v~Wvtfhg-~yDf~yL~k~l~~~~LP~~~~~F~~~l~ 173 (256)
..+. -.++++. .|+.+|. .+. ++..+|+++| .||+.+|-+.+...-+|.-. .
T Consensus 54 ~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~-------~ 126 (482)
T 2qxf_A 54 ADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA-------W 126 (482)
T ss_dssp CTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSG-------G
T ss_pred CCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccc-------c
Confidence 4433 2444442 2444441 112 3567888884 89999998887633222110 0
Q ss_pred hh-cCCcccchhHHHHhhc--------------cC-CCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHh
Q 025183 174 VF-FGEKVYDVKHLIRFCT--------------CL-YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDK 233 (256)
Q Consensus 174 ~~-Fp~~vyD~K~la~~~~--------------~l-~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~ 233 (256)
.| .+...+|+--+++.+. +. .-+|+.+++.+|++. +..|-|-+|++.|+++|.+|++.
T Consensus 127 ~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~--~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp GTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC--C---CTTHHHHHHHHHHHHHHHH
T ss_pred ccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 0122567766655542 11 236999999999986 45799999999999999998865
No 19
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.10 E-value=9e-06 Score=68.31 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=56.5
Q ss_pred CccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhh-----cc-CCCcHHHHHHH-cCCccc
Q 025183 137 DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFC-----TC-LYGGLDRVCKA-LGVERV 209 (256)
Q Consensus 137 ~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~-----~~-l~~gL~~vA~~-L~v~r~ 209 (256)
+..+|+++..+|+.+|-+ .+|. ..++|+..+.... +. -..+|..+++. ||++.
T Consensus 83 ~~~lV~hn~~fD~~~L~~-----~~~~--------------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~- 142 (189)
T 1wlj_A 83 GKLVVGHDLKHDFQALKE-----DMSG--------------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSI- 142 (189)
T ss_dssp TSEEEESSHHHHHHHTTC-----CCTT--------------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCC-
T ss_pred CCEEEECCcHHHHHHHHH-----hCCC--------------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCC-
Confidence 446788888899988743 2342 1277886553221 11 24589999998 89986
Q ss_pred CCC--CCcchhhHHHHHHHHHHHHHhhC
Q 025183 210 VGK--SHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 210 ~g~--~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
.+. .|.|-.|+..|+++|.+|++.+.
T Consensus 143 ~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 143 QNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 443 89999999999999999998765
No 20
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=98.09 E-value=6e-05 Score=62.29 Aligned_cols=144 Identities=18% Similarity=0.174 Sum_probs=85.4
Q ss_pred cCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCCeeeEEEeeeeccccc
Q 025183 37 RYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (256)
Q Consensus 37 ~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (256)
..+||++|+|.+|+... . -.|||+|...++.+|+. ..-.|+.. .+...
T Consensus 4 ~~~~v~iD~ETTGl~~~-------~---------------~~IieIg~v~~~~~~~~---------~~~~~~~l-v~P~~ 51 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE-------R---------------DRIIEIATLVTDANLNI---------LAEGPTIA-VHQSD 51 (180)
T ss_dssp GGCEEEEEEEESSSCTT-------T---------------CCEEEEEEEEECTTCCE---------EEEEEEEE-CCCCH
T ss_pred CCcEEEEEeeCCCCCCC-------C---------------CceEEEEEEEEcCCCcE---------ecCCcceE-ECCCH
Confidence 44899999999997311 0 13999999988766542 22236665 33322
Q ss_pred c---cCchhHHHHHHHcCc--------------------cccC-----CccEEeecchhhHHHHHHHhcCCCCCCChHHH
Q 025183 117 H---AHALDSVELLKRQGL--------------------VLNK-----DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 168 (256)
Q Consensus 117 d---~~~~~Si~~L~~~Gl--------------------v~~~-----~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F 168 (256)
. ..++.+.+.-.-+|+ .+.+ +..+|+++..+|+.+|-+.+-.
T Consensus 52 ~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~---------- 121 (180)
T 2igi_A 52 EQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPE---------- 121 (180)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHH----------
T ss_pred HHhhcCCHHHHHHHHHcCCCHHHHhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHH----------
Confidence 1 112222222112330 1112 3467777778999999886521
Q ss_pred HHHHHhhcCCcccchhH---HHHhhccCCCcHHHHHHHcCCcccCCCCCcchhhHHHHHHHHHHHHHhhC
Q 025183 169 VTRVGVFFGEKVYDVKH---LIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 169 ~~~l~~~Fp~~vyD~K~---la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
+...++....|++- +++.. ..++. .|++ .+..|.|-+|+..|+++|.++++.+|
T Consensus 122 ---~~~~~~~~~~d~~tl~~l~~~~---~p~~~-----~~i~--~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 122 ---LEAYFHYRYLDVSTLKELARRW---KPEIL-----DGFT--KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ---HHHHSCSCEEETHHHHHHHHHH---CGGGG-----GGSC--CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ---hccCCCcceeeHHHHHHHHHHh---ChHhh-----hCCC--CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 12345555788433 34332 12221 1553 35689999999999999999999876
No 21
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.95 E-value=4.8e-05 Score=69.66 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=96.2
Q ss_pred CeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCC---------CCCCCCCCCeeeEEEee
Q 025183 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGN---------LPDLGSGSTYYIWEFNF 109 (256)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~---------~p~~~~~~~~~~wqFNF 109 (256)
.||.+|+|-+|+.... =.|||||+..++.++. .+..+.. ...+-.|+.
T Consensus 13 tfVv~DlETTGL~~~~----------------------d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~-~~v~~~~~~ 69 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSR----------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRP-PRVVDKLSL 69 (314)
T ss_dssp EEEEEEEEESSCGGGC----------------------CCEEEEEEEEEEHHHHHC--CCCSSSCCCCCC-CSSCEEEEE
T ss_pred CEEEEEEECCCCCCCC----------------------CeEEEEEEEEEECCcccccccccccccccccc-ceeeeeEEE
Confidence 5999999999984321 1399999998875421 1000000 123456666
Q ss_pred eecccccccCchhHH-------HHHHHcCc--------------cc--cCCccEEeecc-hhhHHHHHHHhcCCCCCCCh
Q 025183 110 KDFDIARHAHALDSV-------ELLKRQGL--------------VL--NKDVTWVTFHS-AYDFGYLVKCLTQRVLPEKL 165 (256)
Q Consensus 110 ~~F~~~~d~~~~~Si-------~~L~~~Gl--------------v~--~~~v~Wvtfhg-~yDf~yL~k~l~~~~LP~~~ 165 (256)
. .+... .+.+++. +.|++.|. +- .+...+|+||| .||+.||-+.+....++...
T Consensus 70 l-I~P~~-~I~~~a~~IhGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~ 147 (314)
T 3u3y_B 70 C-IAPGK-ACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL 147 (314)
T ss_dssp E-CBCSS-CCCHHHHHHHSCCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT
T ss_pred E-ECCCC-CCCHHHHHhcCCCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC
Confidence 5 44322 2222222 22444431 00 12257889995 79999999988643332210
Q ss_pred HHHHHHHHhhcCCcccchhHHHHhh-c----c-----CCCcHHHHHHH-cCCcccCCCCCcchhhHHHHHHHHHHHHHhh
Q 025183 166 SEFVTRVGVFFGEKVYDVKHLIRFC-T----C-----LYGGLDRVCKA-LGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 166 ~~F~~~l~~~Fp~~vyD~K~la~~~-~----~-----l~~gL~~vA~~-L~v~r~~g~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
.+....|+--+++.. . . -+-+|+.+++. +|++. ...|.|-+|++.|+++|.++.+.+
T Consensus 148 ----------~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~--~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 148 ----------DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP--TDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp ----------TTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCC--SCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred ----------CCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 011144654433311 1 1 23479999999 99986 468999999999999999999886
Q ss_pred C
Q 025183 235 F 235 (256)
Q Consensus 235 ~ 235 (256)
.
T Consensus 216 l 216 (314)
T 3u3y_B 216 L 216 (314)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.83 E-value=0.00023 Score=59.86 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=51.7
Q ss_pred cEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCcchh
Q 025183 139 TWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGS 218 (256)
Q Consensus 139 ~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hqAGs 218 (256)
.+|+++..||+.||-+-+-. +..+++.+..|+.-+.+.+..+... +++ +++ ....|.|-+
T Consensus 106 ~lvghn~~FD~~fL~~~~~~-------------~~~~~~~~~~d~~~l~~l~~~~~p~---~~~--~i~--~~~~H~Al~ 165 (194)
T 2gbz_A 106 PMCGNSICQDRRFLHRQMSR-------------LERYFHYRNLDVSTIKELARRWAPA---VAS--GFA--KSSAHTALS 165 (194)
T ss_dssp CEEESSHHHHHHHHHHHCHH-------------HHHHSCSCEEEHHHHHHHHHHHCGG---GGT--TCC--CCSCCSHHH
T ss_pred eEEecCHHHhHHHHHHHHHH-------------hcccCCCccccHHHHHHHHHHhCHH---HHh--CCC--CCCCcccHH
Confidence 48888889999999887531 1244554477876543332222111 112 343 356799999
Q ss_pred hHHHHHHHHHHHHHhhC
Q 025183 219 DSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 219 dsllT~~~F~kl~~~~~ 235 (256)
|+..|+++|..+++.++
T Consensus 166 Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 166 DVRDSIDELRHYRQFMG 182 (194)
T ss_dssp HHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999876
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.18 E-value=0.01 Score=50.03 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=55.6
Q ss_pred CCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccc---hhHHHHhhccCCCcHHHHHHHcCCcccCCC
Q 025183 136 KDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYD---VKHLIRFCTCLYGGLDRVCKALGVERVVGK 212 (256)
Q Consensus 136 ~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD---~K~la~~~~~l~~gL~~vA~~L~v~r~~g~ 212 (256)
.+...|.++-.+|.+||-+-+- .+..+|+.++.| +|.|++.. ..++.. +++ ...
T Consensus 103 ~~~~lvghn~~FD~~FL~~~~~-------------~~~~~~~~~~iDvsTl~elar~~---~P~~~~-----~~~--~~~ 159 (186)
T 3tr8_A 103 GKSPLCGNSVCQDRRFLSRYMP-------------RLNQFFHYRHLDVTTLKILAQRW---APQIAA-----AHI--KES 159 (186)
T ss_dssp TCSCEEESSTHHHHHHHHHHCH-------------HHHHHSCSCEEEHHHHHHHHHHH---CHHHHT-----TSC--CCC
T ss_pred CCcEEEEEcHHHhHHHHHHHHH-------------HcCCCCCCcEEeHHHHHHHHHHH---Cccccc-----cCC--CCC
Confidence 3446677777899999988742 234567766999 34466654 223321 443 366
Q ss_pred CCcchhhHHHHHHHHHHHHHhhCCC
Q 025183 213 SHQAGSDSLLTLHAFLKIKDKHFGN 237 (256)
Q Consensus 213 ~hqAGsdsllT~~~F~kl~~~~~~~ 237 (256)
.|.|=+|++-|...+.-.++.+|..
T Consensus 160 ~HrAl~Da~ati~~l~~y~~~~~~~ 184 (186)
T 3tr8_A 160 QHLALQDIRDSIEELRYYRAHLLNL 184 (186)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTBCC
T ss_pred CcChHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999998854
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=96.99 E-value=0.022 Score=56.03 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhcCCeeEEeeccccccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCCeee
Q 025183 25 ISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYI 104 (256)
Q Consensus 25 ~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~ 104 (256)
.+++..+.+.++...+|++|||.+|+... . -.++++|++. .+|+ .
T Consensus 13 ~~~l~~~~~~l~~~~~va~DtEttgl~~~-----~-----------------~~iv~I~~~~--~~g~-----------~ 57 (605)
T 2kfn_A 13 EETLKAWIAKLEKAPVFAFDTETDSLDNI-----S-----------------ANLVGLSFAI--EPGV-----------A 57 (605)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEESCSCTT-----T-----------------CCEEEEEEEE--ETTE-----------E
T ss_pred HHHHHHHHHhcccCCeEEEEEecCCCCcc-----c-----------------CceEEEEEEE--cCCc-----------E
Confidence 46776666667778999999999997321 0 0266777774 2332 1
Q ss_pred EEEeeee--cccccccCchhHHHHHHHcCccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccc
Q 025183 105 WEFNFKD--FDIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYD 182 (256)
Q Consensus 105 wqFNF~~--F~~~~d~~~~~Si~~L~~~Glv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD 182 (256)
|-+.+.. +.....+-..+-++.|+. ++-++++.||.|+..||+.+|.+. |-++ +..++|
T Consensus 58 ~yip~~~~~~~~~~~l~~~~vl~~L~~--~L~d~~i~kV~hnak~D~~~L~~~--Gi~l---------------~~~~~D 118 (605)
T 2kfn_A 58 AYIPVAHDYLDAPDQISRERALELLKP--LLEDEKALKVGQNLKYDRGILANY--GIEL---------------RGIAFD 118 (605)
T ss_dssp EEEECCCCSTTCCCCCCHHHHHHHHHH--HHTCTTSCEEESSHHHHHHHHHTT--TCCC---------------CCEEEE
T ss_pred EEEeccccccccccccCHHHHHHHHHH--HHcCCCCeEEEECcHHHHHHHHHC--CCCC---------------CCcccc
Confidence 1111110 000001101111222222 344567899999999999999872 4333 222799
Q ss_pred hhHHHHhhcc-C-CCcHHHHHHHc-CCccc-------CCC-------------CCcchhhHHHHHHHHHHHHHhhC
Q 025183 183 VKHLIRFCTC-L-YGGLDRVCKAL-GVERV-------VGK-------------SHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 183 ~K~la~~~~~-l-~~gL~~vA~~L-~v~r~-------~g~-------------~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
|..++..+.. . ..+|+.+|+.+ ++... .|. .|.|..|+.+|.+.|.+|.+..-
T Consensus 119 T~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 119 TMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888753 2 46899999987 87631 011 14588999999999999988764
No 25
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=95.28 E-value=0.7 Score=43.65 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=61.8
Q ss_pred ccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHH-cCCcccC
Q 025183 132 LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKA-LGVERVV 210 (256)
Q Consensus 132 lv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~-L~v~r~~ 210 (256)
++-++++.+|.++..+|+.-|.+.+ |-. +.+++||..++..+..-..||..+++. ||+.-.-
T Consensus 177 lL~dp~i~KV~H~~k~Dl~~L~~~~-Gi~----------------~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 177 SLTDPAIVKVFHGADSDIEWLQKDF-GLY----------------VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp HHTCTTSEEEESSCHHHHHHHHHHH-CCC----------------CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred HHcCCCceEEEeehHHHHHHHHHHc-CCC----------------cCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 4557888899888889998876543 322 234899999888876334699999877 6764210
Q ss_pred C--------------CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 211 G--------------KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 211 g--------------~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
+ ..+-|..|+..+.+.|-+|+...-
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 113477899999999999988764
No 26
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=90.72 E-value=6.1 Score=32.47 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=56.4
Q ss_pred ccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccc-hhHHHHhhcc-CCCcHHHHHHHc-CCcc
Q 025183 132 LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYD-VKHLIRFCTC-LYGGLDRVCKAL-GVER 208 (256)
Q Consensus 132 lv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD-~K~la~~~~~-l~~gL~~vA~~L-~v~r 208 (256)
++-+++++.|.|+.-+|+..|.+.+ |-. +.+++| +...+..+.. -..||+.+|+.. +..-
T Consensus 91 lL~d~~i~Kv~~~~k~D~~~L~~~~-gi~----------------~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 91 LLENKSIKKAGVGIEGDQWKLLRDF-DVK----------------LESFVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHTCTTSEEEESSHHHHHHHHHHHH-CCC----------------CCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HhcCCCceEEEEeeHHHHHHHHHHC-CCC----------------CCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 3446788999998889998887643 322 233889 4444433332 345899999875 6432
Q ss_pred c------------CC----CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 209 V------------VG----KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 209 ~------------~g----~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
. .. ..+-|..|+..+.+.+-+|++..-
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 01 123477899999999999987653
No 27
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=82.11 E-value=5.8 Score=33.30 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=43.0
Q ss_pred CccEEeecchhhHHHHHHHhcC-CCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHcCCcccCCCCCc
Q 025183 137 DVTWVTFHSAYDFGYLVKCLTQ-RVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQ 215 (256)
Q Consensus 137 ~v~Wvtfhg~yDf~yL~k~l~~-~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L~v~r~~g~~hq 215 (256)
.+.-+++.++||...|.+++-. ..||... |..-.|++-+...+.. -++++..+..|.
T Consensus 106 ~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~-----------p~~~~dlr~~~~~~g~-----------~~lp~~~~~~H~ 163 (190)
T 4hec_A 106 SIELWAWVGAYDHVALCQLWGPMTALPPTV-----------PRFTRELRQLWEDRGC-----------PRMPPRPRDVHD 163 (190)
T ss_dssp EEEEEESSCHHHHHHHHTTTSSGGGSCTTS-----------CSSCEEHHHHHHHTTC-----------CCCCC-----CC
T ss_pred CCEEEEecccccHHHHHHHhcccccCCccc-----------chhhHHHHHHHHHcCC-----------CCCCCCCCCCcC
Confidence 3445678899999999887532 3455442 2213355444433321 112222466799
Q ss_pred chhhHHHHHHHHHHHHH
Q 025183 216 AGSDSLLTLHAFLKIKD 232 (256)
Q Consensus 216 AGsdsllT~~~F~kl~~ 232 (256)
|=.|+-..+++|..|..
T Consensus 164 AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 164 ALVDARDQLRRFRLITS 180 (190)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 99999999999988865
No 28
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=80.98 E-value=5.1 Score=37.27 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=62.9
Q ss_pred ccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHc-CCcccC
Q 025183 132 LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL-GVERVV 210 (256)
Q Consensus 132 lv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L-~v~r~~ 210 (256)
++-++++++|.|...+|+..|.+.+ |-. +.+++||...+..++.-+.||..+++.+ |+.-.-
T Consensus 154 lL~d~~i~KV~h~~k~Dl~~L~~~~-Gi~----------------~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K 216 (410)
T 2hbj_A 154 VFTNPSIVKVFHGAFMDIIWLQRDL-GLY----------------VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSK 216 (410)
T ss_dssp HHTCTTSEEEESSCHHHHHHHHHHH-CCC----------------CSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCC
T ss_pred HHcCCCceEEEEehHHHHHHHHHHc-CCC----------------cCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCc
Confidence 4456789999999999999988753 321 3349999988888763357999999885 654210
Q ss_pred C--------------CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 211 G--------------KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 211 g--------------~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
| ...-|..|+..+..+|-+|++..-
T Consensus 217 ~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 217 KYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112367899999999999988764
No 29
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=67.00 E-value=19 Score=32.63 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred ccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccC-CCcHHHHHHHc-CCccc
Q 025183 132 LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCL-YGGLDRVCKAL-GVERV 209 (256)
Q Consensus 132 lv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l-~~gL~~vA~~L-~v~r~ 209 (256)
++.++++++|.|+.-+|+..|.+.+ |-. |..++||...+..++.- ..||+.+++.. |+.-.
T Consensus 69 ll~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~----------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~ 131 (375)
T 1yt3_A 69 ILRDPSITKFLHAGSEDLEVFLNVF-GEL----------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 (375)
T ss_dssp HHHCTTSEEEESSCHHHHHHHHHHH-SSC----------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCC
T ss_pred HHcCCCceEEEeeHHHHHHHHHHHc-CCC----------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCC
Confidence 4456788999999999999987743 322 22389999988887532 46899999874 65421
Q ss_pred CC--------------CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 210 VG--------------KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 210 ~g--------------~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
-+ ..+-|..|+..+.++|-+|++..-
T Consensus 132 K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp CTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112367899999999999987764
No 30
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=60.79 E-value=9.4 Score=32.13 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=94.9
Q ss_pred ccccCHHHHHHHHHH-Hh-hcCCeeEEeeccc-cccccCCCCCCCCChhhhHHHHHhcccccceeeeeeeeecCCCCCCC
Q 025183 19 VFEFNLISEFERIRA-LI-DRYPIISMDTEFP-GVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPD 95 (256)
Q Consensus 19 Vw~~N~~~e~~~I~~-~i-~~~~fIAiDtEFp-Gv~~~~~~~~~~~~~e~rY~~lk~nvd~~~iiQlGlt~~~~~g~~p~ 95 (256)
+....+......+.+ .+ ...++|++|||+. +.... . . ...|. -+.+.+||+.- |+
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~---~---~--~~~~~-----~~~~~LiQla~------~~--- 82 (206)
T 1vk0_A 25 GSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPET---E---T--KTKTS-----GWSLSSVKLST------RN--- 82 (206)
T ss_dssp CSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC--------------CGGG-----GCEEEEEEEEC------SS---
T ss_pred ecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCccc---c---c--ccCCC-----CCceEEEEEec------CC---
Confidence 346667777776633 33 4678999999985 42100 0 0 01111 14677899852 11
Q ss_pred CCCCCCeeeEEEeeeecccccccCchhHHHHHHHcCccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhh
Q 025183 96 LGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVF 175 (256)
Q Consensus 96 ~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~~L~~~Glv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~ 175 (256)
.++-|-. . +.. +.+++.|.+ ++.+++++.|.+....|+..|.+.+ |-.
T Consensus 83 -------~~~l~~l-----~-~~~-~~~L~~L~~--lL~d~~i~Kvg~~~~~D~~~L~~~~-g~~--------------- 130 (206)
T 1vk0_A 83 -------LCLFLRL-----P-KPF-HDNLKDLYR--FFASKFVTFVGVQIEEDLDLLRENH-GLV--------------- 130 (206)
T ss_dssp -------EEEEEEC-----C-SSC-CGGGHHHHH--HHTCSSSEEEESSCHHHHHHHHHHH-CCC---------------
T ss_pred -------CeEEEec-----c-ccC-CccHHHHHH--HhcCCCceEEEeccHHHHHHHHHhc-CCC---------------
Confidence 2333332 1 222 234333332 5567889999988999999997764 321
Q ss_pred cCCcccchhHHHHh-hcc---CCCcHHHHHHH-cCCcc-c-------------CCCCCcchhhHHHHHHHHHHHHH
Q 025183 176 FGEKVYDVKHLIRF-CTC---LYGGLDRVCKA-LGVER-V-------------VGKSHQAGSDSLLTLHAFLKIKD 232 (256)
Q Consensus 176 Fp~~vyD~K~la~~-~~~---l~~gL~~vA~~-L~v~r-~-------------~g~~hqAGsdsllT~~~F~kl~~ 232 (256)
|.+++|+..+|.. +.. ..-||+.+++. ||++= . ..+.+-|-.|++...++|.+|++
T Consensus 131 -~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 131 -IRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp -CSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4459999877643 432 35689998877 56532 0 11334578899999999999865
No 31
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=40.69 E-value=27 Score=24.79 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHcCCcccCCC---CCcchhhHHHHHHHHHHHHHhh
Q 025183 198 DRVCKALGVERVVGK---SHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 198 ~~vA~~L~v~r~~g~---~hqAGsdsllT~~~F~kl~~~~ 234 (256)
+-+++.|+++. ++. .-..|-||+.+.+.-.++++.+
T Consensus 21 ~i~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 21 EIWERVLGVSG-IGILDNFFQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp HHHHHHHTCSS-CCSSCCTTSSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCC-CCCCCCHHHcCCCHHHHHHHHHHHHHHH
Confidence 34567788875 443 3489999999999999998875
No 32
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=39.12 E-value=12 Score=37.02 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCccEEeecc-hhhHHHHHHHhc-----CCCCCCChHHHHHHHHhhcCCcccchhHHHHhhcc-C-CCcHHHHHHHc---
Q 025183 136 KDVTWVTFHS-AYDFGYLVKCLT-----QRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTC-L-YGGLDRVCKAL--- 204 (256)
Q Consensus 136 ~~v~Wvtfhg-~yDf~yL~k~l~-----~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~-l-~~gL~~vA~~L--- 204 (256)
+++.+|.|+. .||+.+|.+.+. |-.+|. ..++||..++..+.. . ..+|+.||+.+
T Consensus 52 ~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~--------------~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~ 117 (698)
T 1x9m_A 52 RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR--------------ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPG 117 (698)
T ss_dssp TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG--------------GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCS
T ss_pred cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCC--------------CcchhHHHHHHHhCCCCCCCCHHHHHHHHccc
Confidence 6688999998 999999988752 444441 126677666666532 1 22333333322
Q ss_pred -----C----------------------Cc-c---cCC-----CCCcchhhHHHHHHHHHHHHHhhC
Q 025183 205 -----G----------------------VE-R---VVG-----KSHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 205 -----~----------------------v~-r---~~g-----~~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
+ .. + ... ..|-|..|+.+|.+.|.+|.+.+-
T Consensus 118 sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 118 ALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred chhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 0 000 135688999999999999988764
No 33
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=39.12 E-value=38 Score=23.96 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHcCCcccCC---CCCcchhhHHHHHHHHHHHHHhh
Q 025183 198 DRVCKALGVERVVG---KSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 198 ~~vA~~L~v~r~~g---~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
+-+++.||++. ++ .....|-||+++.+.-.+|++.+
T Consensus 23 ~i~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 61 (93)
T 4i4d_A 23 AIWAETLGRDS-VGPHEDFAALGGNSIHAIXITNRVEELV 61 (93)
T ss_dssp HHHHHHHTCSC-CCTTCCTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-CCCCCCHHHcCCcHHHHHHHHHHHHHHh
Confidence 34667788866 44 35589999999999999998875
No 34
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=34.52 E-value=45 Score=32.48 Aligned_cols=87 Identities=10% Similarity=-0.117 Sum_probs=60.1
Q ss_pred ccccCCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhcc-C-CCcHHHHHHH-cCCcc
Q 025183 132 LVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTC-L-YGGLDRVCKA-LGVER 208 (256)
Q Consensus 132 lv~~~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~-l-~~gL~~vA~~-L~v~r 208 (256)
++-+++++-|.++.-||+..|.+. |-.+|. . +|||...+..+.. . ..+|+.||+. |++.-
T Consensus 76 lLed~~i~KV~hn~K~Dl~vL~~~--Gi~l~g--------------~-~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l 138 (592)
T 3pv8_A 76 WLGDETKKKSMFDSKRAAVALKWK--GIELCG--------------V-SFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAV 138 (592)
T ss_dssp HHTCTTSEEEESSHHHHHHHHHHT--TCCCCC--------------E-EEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSS
T ss_pred HHhCCCCeEEEechHHHHHHHHHc--CCCCCC--------------c-cchHHHHHHHcCCCCCCCCHHHHHHHHcCCCC
Confidence 344677888888888999988763 545432 3 8899988877753 2 4689999987 45532
Q ss_pred c-----CCC------------CCcchhhHHHHHHHHHHHHHhhC
Q 025183 209 V-----VGK------------SHQAGSDSLLTLHAFLKIKDKHF 235 (256)
Q Consensus 209 ~-----~g~------------~hqAGsdsllT~~~F~kl~~~~~ 235 (256)
. .|. .+.|..|+..|.+.+-+|+..+-
T Consensus 139 ~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 139 RPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp CCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 111 13467899999999988887654
No 35
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=30.00 E-value=17 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCCCCChHHHHHHHH------hhcCCcccchhHHHHhhccCCCc---HHHHHH-HcCC
Q 025183 159 RVLPEKLSEFVTRVG------VFFGEKVYDVKHLIRFCTCLYGG---LDRVCK-ALGV 206 (256)
Q Consensus 159 ~~LP~~~~~F~~~l~------~~Fp~~vyD~K~la~~~~~l~~g---L~~vA~-~L~v 206 (256)
.++|.++..+.+++. ..+.. =.|++.|.+...-...+ |+.+|. .+|.
T Consensus 91 ~~~~~~L~~L~~lL~d~~i~Kvg~~~-~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~ 147 (206)
T 1vk0_A 91 KPFHDNLKDLYRFFASKFVTFVGVQI-EEDLDLLRENHGLVIRNAINVGKLAAEARGT 147 (206)
T ss_dssp SSCCGGGHHHHHHHTCSSSEEEESSC-HHHHHHHHHHHCCCCSSEEEHHHHHHHHHTC
T ss_pred ccCCccHHHHHHHhcCCCceEEEecc-HHHHHHHHHhcCCCcCCeeeHHHHHHHHcCC
Confidence 467777544444433 23344 67888887766422222 677774 4664
No 36
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=28.81 E-value=1.4e+02 Score=31.65 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=50.9
Q ss_pred EEeecc-hhhHHHHHHH---hcCCCCCCC-------------h--HHHHHHHHhhcCC-cccchhHHHHhhccC-CCcHH
Q 025183 140 WVTFHS-AYDFGYLVKC---LTQRVLPEK-------------L--SEFVTRVGVFFGE-KVYDVKHLIRFCTCL-YGGLD 198 (256)
Q Consensus 140 Wvtfhg-~yDf~yL~k~---l~~~~LP~~-------------~--~~F~~~l~~~Fp~-~vyD~K~la~~~~~l-~~gL~ 198 (256)
-++|++ ++|+.||++= +.|-++|.= . ..|...-...++. -+.|+-.+++....+ .-+|+
T Consensus 420 IvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl~~~~~~~~kl~sYsL~ 499 (1193)
T 2gv9_A 420 VTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLN 499 (1193)
T ss_dssp EEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTTCCCSCCCHH
T ss_pred EEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCeEeehHHHHHHHHhccCCCCHH
Confidence 578886 4999999965 356566520 0 1222211222332 266875555443233 34799
Q ss_pred HHHHH-cCCcccCCCCC-------cch------------hhHHHHHHHHHHH
Q 025183 199 RVCKA-LGVERVVGKSH-------QAG------------SDSLLTLHAFLKI 230 (256)
Q Consensus 199 ~vA~~-L~v~r~~g~~h-------qAG------------sdsllT~~~F~kl 230 (256)
.||+. ||..+ ....+ +.| .|+++|.+.|.|+
T Consensus 500 ~Va~~~Lg~~K-~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 500 AVAEAVLKDKK-KDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp HHHHHTSCCCC-CCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCC-CCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 88877 33221 112 4899999999886
No 37
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=24.40 E-value=1.1e+02 Score=29.41 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=51.7
Q ss_pred ccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhc-cCCCcHHHHHHHcCCcccCCCCCcc
Q 025183 138 VTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT-CLYGGLDRVCKALGVERVVGKSHQA 216 (256)
Q Consensus 138 v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~-~l~~gL~~vA~~L~v~r~~g~~hqA 216 (256)
++-|.++.-||+. -.|-++ +. ++||..++..+. + ..+|+.||+.+... .| |.|
T Consensus 57 ~~kV~hn~K~Dl~-----~~Gi~~---------------~~-~fDT~laAyLL~p~-~~~L~~La~~yl~~--~g--k~a 110 (540)
T 4dfk_A 57 RGLLAKDLSVLAL-----REGLGL---------------PP-GDDPMLLAYLLDPS-NTTPEGVARRYGGE--WT--EEA 110 (540)
T ss_dssp CSTTHHHHHHHHH-----HTTCCC---------------CB-CCCHHHHHHHHCTT-CCCHHHHHHHHTSC--CC--SCH
T ss_pred CCEEEeccHHHHH-----HcCCCC---------------Cc-ceeHHHHHHHhCCC-CCCHHHHHHHHhhh--hc--cch
Confidence 5556666668887 224322 22 889998888874 4 77999999986432 22 567
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 025183 217 GSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 217 GsdsllT~~~F~kl~~~~ 234 (256)
..|+..|.+.|.+|++.+
T Consensus 111 ~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 111 GERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999998887
No 38
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=22.94 E-value=69 Score=29.49 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCCeeEEeeccccc
Q 025183 25 ISEFERIRALIDRYPIISMDTEFPGV 50 (256)
Q Consensus 25 ~~e~~~I~~~i~~~~fIAiDtEFpGv 50 (256)
.+++..+.+.+.....||+|||+.+.
T Consensus 93 ~~~L~~~~~~L~~~~~vavDtE~~~~ 118 (410)
T 2hbj_A 93 STELESMLEDLKNTKEIAVDLEHHDY 118 (410)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCceEEEeeecCC
Confidence 46777777777788999999998764
No 39
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=21.42 E-value=1.1e+02 Score=22.23 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=28.9
Q ss_pred HHHHHHHcCCcc--cC---CCCCcchhhHHHHHHHHHHHHHhh
Q 025183 197 LDRVCKALGVER--VV---GKSHQAGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 197 L~~vA~~L~v~r--~~---g~~hqAGsdsllT~~~F~kl~~~~ 234 (256)
-+.||+.||++. .+ .....-|-|||++.+.=.+|.+.|
T Consensus 12 ~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~f 54 (91)
T 2cg5_B 12 VEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLEREL 54 (91)
T ss_dssp HHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHH
Confidence 477999999853 12 234688999999999888887776
No 40
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=21.41 E-value=2.3e+02 Score=26.18 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCccEEeecchhhHHHHHHHhcCCCCCCChHHHHHHHHhhcCCcccchhHHHHhhccCCCcHHHHHHHc-CCcccCCCCC
Q 025183 136 KDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL-GVERVVGKSH 214 (256)
Q Consensus 136 ~~v~Wvtfhg~yDf~yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~vyD~K~la~~~~~l~~gL~~vA~~L-~v~r~~g~~h 214 (256)
.+.++|.++..+|+..|. -.|-. |..+|||...+..++.-.-||..|++.+ |+.- .-...
T Consensus 92 ~d~~KV~h~~k~Dl~~L~--~~gi~----------------~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~-~K~~~ 152 (440)
T 3cym_A 92 GDAVWILHDSLQDLPGFD--ELGME----------------PQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTL-AKEHS 152 (440)
T ss_dssp TTCEEEESSHHHHHHHHH--HHTCC----------------CCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEEC-CCCCT
T ss_pred CCCCEEEEcCHHHHHHHH--HcCCc----------------CCceehHHHHHHHhCCCCCCHHHHHHHHhCCCc-ccccc
Q ss_pred c---------------chhhHHHHHHHHHHHHHhh
Q 025183 215 Q---------------AGSDSLLTLHAFLKIKDKH 234 (256)
Q Consensus 215 q---------------AGsdsllT~~~F~kl~~~~ 234 (256)
. |..|+..+...|-+|++..
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 41
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=21.29 E-value=45 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=35.0
Q ss_pred EeecchhhHHHHHHHhcCCCC-CCChHHHHHHHHhhc---CCcccchhHH
Q 025183 141 VTFHSAYDFGYLVKCLTQRVL-PEKLSEFVTRVGVFF---GEKVYDVKHL 186 (256)
Q Consensus 141 vtfhg~yDf~yL~k~l~~~~L-P~~~~~F~~~l~~~F---p~~vyD~K~l 186 (256)
..|-+|.-||=|+..+.|.|. |+|....-+.+..-. |. +.|+|.=
T Consensus 23 A~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~-v~~v~V~ 71 (122)
T 2ogf_A 23 AVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPC-VYDIKVK 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTT-EEEEEEE
T ss_pred HHHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCc-eEEEEEE
Confidence 468899999999999999999 999887766655333 66 7676653
No 42
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=20.76 E-value=63 Score=24.40 Aligned_cols=34 Identities=9% Similarity=-0.167 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCceEEeccccCHHHHHHHHHHHh
Q 025183 2 SDVPPPQPPKPRILIREVFEFNLISEFERIRALI 35 (256)
Q Consensus 2 ~~~~~~~~~~~~~~v~dVw~~N~~~e~~~I~~~i 35 (256)
++|+||..+.+.+.||....+.+++.+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~iR~~~~~D~~~i~~l~~~~~ 40 (188)
T 3h4q_A 7 HHHHHHENLYFQGMIRLGKMSDLDQILNLVEEAK 40 (188)
T ss_dssp ------------CCEEECCGGGHHHHHHHHHHHH
T ss_pred CCcccccCcceeEEEEecCHhhHHHHHHHHHHHH
Confidence 3456666678889999999999998888888763
Done!