BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025184
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/260 (71%), Positives = 208/260 (80%), Gaps = 5/260 (1%)
Query: 1 MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISS 56
M T L C S +IS+ + S + + D V+ RRSV+ SG + S+
Sbjct: 2 METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSST 60
Query: 57 AVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSV 116
L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSV
Sbjct: 61 TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSV 120
Query: 117 PQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKV 176
PQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD IE IG P KV
Sbjct: 121 PQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKV 180
Query: 177 INAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG 236
INAFGPEVIGENVEGKVLS +V E GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG
Sbjct: 181 INAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNG 240
Query: 237 LQWKRHYTDLKKIADSFRVV 256
LQWKRHY DLK+IA SFR+V
Sbjct: 241 LQWKRHYKDLKRIASSFRIV 260
>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis
thaliana GN=PPD6 PE=1 SV=1
Length = 262
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 26/231 (11%)
Query: 42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGG 101
+RR +L+ A I A+L ++ ++ + +P LS D +P D
Sbjct: 41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPAL 98
Query: 102 HGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIV 151
+ PY F +P W ++ IA+ L G I+++F + K+G++ V+
Sbjct: 99 RAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVA 153
Query: 152 APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYE 210
+P++R + +ATIE +G PEKVI + GP V G + + ++L +E++ + YY+Y
Sbjct: 154 SPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYV 211
Query: 211 LEPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
LE P H L ATA G+ + LF V+ QW+ L+ I DSF++
Sbjct: 212 LETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262
>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At3g63540 PE=1 SV=2
Length = 229
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
Y++ VP+ W E VS + G D F +PKK L F A ++
Sbjct: 86 YVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKK----TEKEYLTFL------AGFRQLA 135
Query: 172 PPEKVIN--AFGPEVIGENVEG--KVLSMDVEELCGRKYYRYELEP--PHVLITATAAGN 225
P + ++N A + + + G KV+S + ++ G+ YY YE++ H LIT T + N
Sbjct: 136 PRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKN 195
Query: 226 RLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
RLY V +W R + L + DSF+ V
Sbjct: 196 RLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 166 TIEKIGPPEKVINAFGPEVIGE-NVEGKVLSMDVEELCGRKYYRYELE------PPHVLI 218
TI++ GPP+++ +V+ N + ++ ++ G+ YY++E H L
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALG 191
Query: 219 TATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
T T Y + N +W++ L + DSF++
Sbjct: 192 TITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 24/163 (14%)
Query: 105 GWSPIIP----YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADD 160
+SP + Y + P +W E D S K R + +RF
Sbjct: 87 SYSPFVDREDGYSYYYPSDWREFDFRAHD-----------SAFKDRYLQLQNVRVRFIPT 135
Query: 161 LGDDATIEKIGPPEKVI-NAFGPEVIGENVEGKVLSMDVEELCGRKYYRYE--LEPPHVL 217
+D I ++GP E+V+ + + N + M G+ YY +E L P
Sbjct: 136 EKND--IHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYA 193
Query: 218 ITATAA----GNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
T+ A NR Y V N +W++ L+ +ADS +++
Sbjct: 194 TTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKIL 236
>sp|P13486|Y4066_RHIME Uncharacterized protein RA0666 OS=Rhizobium meliloti (strain 1021)
GN=RA0666 PE=4 SV=1
Length = 151
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 ENVEGKVLSMDVEEL-CGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKR 241
E +G V + D+ L C R + +P V IT +GNRLY FS+ G + W R
Sbjct: 9 EECQGVVAAGDLARLACCR-----DDQPYIVPITYAHSGNRLYCFSMPGQKIDWMR 59
>sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1
Length = 4074
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 181 GPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWK 240
GPEV N +G L+ E CGR R +P H+++T AA L T L +K
Sbjct: 565 GPEV--SNSDGD-LTSGTEPFCGRFSLR---QPRHLVLTPPAAQKGYRLDQYTHLCLAYK 618
Query: 241 RHYTDLKKIADSFRV 255
H + K+ SF +
Sbjct: 619 GHMNKILKMIVSFTI 633
>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=5
Length = 3623
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 121 DEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAF 180
+ P++ + + G + +RF S G A ++ G+D + G KV + F
Sbjct: 1814 NSFPLNYSSIVGHTLWVRFISDGSGSGTGFQATFMKI---FGNDNIV---GTHGKVASPF 1867
Query: 181 GPEVIGEN--------------VEGKVLSMDVEELCGRKYYR---YELEPPHVLITATAA 223
PE N V G++L MD+EE+ Y + Y+ H +
Sbjct: 1868 WPENYPHNSNYQWTVNVNASHVVHGRILEMDIEEIQNCYYDKLRIYDGPSIHARLIGAYC 1927
Query: 224 GNRLYLFSVTGNGLQWKRHYTD 245
G + FS TGN L + Y+D
Sbjct: 1928 GTQTESFSSTGNSLTF-HFYSD 1948
>sp|Q8EHY2|GBPA_SHEON GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1)
GN=gbpA PE=3 SV=2
Length = 475
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 26 KAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEP- 84
++ AC TGS+ G ++ V GAS GFP G A G +A G P
Sbjct: 37 RSYACKTGSNVNCGAVQWEPQSVEGAS-------GFPESGPA---DGKIASAANGAFSPL 86
Query: 85 DEQGWRTYRRPDDKSGGHGVGW 106
DEQ + + D KSG + W
Sbjct: 87 DEQSPSRWSKRDIKSGWNDFSW 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,325,526
Number of Sequences: 539616
Number of extensions: 4805440
Number of successful extensions: 9647
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9638
Number of HSP's gapped (non-prelim): 13
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)