Query 025184
Match_columns 256
No_of_seqs 164 out of 273
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.6E-35 5.6E-40 253.5 14.7 144 86-256 6-177 (177)
2 2xb3_A PSBP protein; photosynt 100.0 4.9E-34 1.7E-38 240.0 16.9 144 87-256 6-165 (165)
3 2lnj_A SLL1418 protein, putati 100.0 3.2E-35 1.1E-39 249.3 0.0 147 87-256 12-170 (170)
4 1tu1_A Hypothetical protein PA 98.1 4.4E-05 1.5E-09 62.5 12.5 120 111-255 10-141 (148)
5 3lyd_A Uncharacterized protein 96.0 0.27 9.3E-06 40.9 14.4 125 111-256 19-158 (161)
6 4exr_A Putative lipoprotein; Y 66.7 16 0.00054 30.2 7.0 58 172-233 33-92 (174)
7 2pq4_B Periplasmic nitrate red 66.0 3.1 0.0001 25.9 1.8 13 41-53 3-15 (35)
8 4exr_A Putative lipoprotein; Y 59.4 27 0.00091 28.8 7.1 52 169-235 112-163 (174)
9 3hlz_A Uncharacterized protein 59.3 7.6 0.00026 34.2 3.7 33 112-151 14-48 (269)
10 4esn_A Hypothetical protein; p 43.7 64 0.0022 24.5 6.4 40 199-238 22-66 (104)
11 3ld7_A LIN0431 protein; DUF131 40.7 68 0.0023 24.1 6.1 40 199-238 12-63 (101)
12 2kpp_A LIN0431 protein; soluti 35.6 96 0.0033 23.9 6.3 40 199-238 12-63 (114)
13 3stb_C RNA-editing complex pro 30.5 34 0.0012 27.8 3.1 44 166-211 89-135 (148)
14 4drr_A Outer capsid protein VP 26.3 63 0.0021 26.7 3.9 37 200-236 85-122 (163)
15 2aen_A Hemagglutinin, outer ca 25.6 85 0.0029 25.9 4.6 38 200-237 86-124 (164)
16 1ywi_A Formin-binding protein 22.1 36 0.0012 21.3 1.3 20 222-241 19-38 (41)
17 2ysi_A Transcription elongatio 21.7 21 0.00071 22.4 0.1 20 222-241 17-36 (40)
18 4aay_B AROB; oxidoreductase, r 21.6 26 0.00089 28.9 0.8 17 39-55 8-24 (175)
19 1kqr_A VP4; spike protein, out 21.5 87 0.003 26.2 3.9 38 200-237 101-139 (179)
20 2le2_A P56; UDG inhibition, DN 20.7 53 0.0018 22.0 2.0 28 195-222 13-52 (56)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.6e-35 Score=253.52 Aligned_cols=144 Identities=23% Similarity=0.466 Sum_probs=119.8
Q ss_pred CCCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCC
Q 025184 86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGD 163 (256)
Q Consensus 86 ~~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~ 163 (256)
..||++|. .+| |+|.||++|+++++.. .+|+|++|+|+++ +||+|+|+|+ +
T Consensus 6 ~~g~~~y~-----~~g----------ysf~yP~~W~~~~~~~----~~G~~~~f~d~~~~~~nvsV~v~p~--------~ 58 (177)
T 1v2b_A 6 DTDFQTYN-----GDG----------FKLQIPSKWNPNKEVE----YPGQVLRFEDNFDATSNVIVAITPT--------D 58 (177)
T ss_dssp -CCEEEEE-----CSS----------EEEEEETTCEECCCCC----STTEEEEEEETTEEEEEEEEEEEEC--------S
T ss_pred CCCceEEe-----cCC----------EEEEcCCCCccccccc----CCCceEEEeCCcCCCccEEEEEeCC--------C
Confidence 38999993 566 9999999999877642 3689999999987 5999999995 4
Q ss_pred cccccccCCHHHHHHHh----CccccCC------------CcccceeEeeeEEEcCeeeEEEEEc---------CCceEE
Q 025184 164 DATIEKIGPPEKVINAF----GPEVIGE------------NVEGKVLSMDVEELCGRKYYRYELE---------PPHVLI 218 (256)
Q Consensus 164 ~~sI~dlGspeev~~~l----~~~~~g~------------~~~a~ll~a~~r~~dG~~YY~yEl~---------~pH~L~ 218 (256)
+++|+|||+|+++++.+ +++++.+ ..+++|+++++++.||++||+|||. .+|+|+
T Consensus 59 ~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~ 138 (177)
T 1v2b_A 59 KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLV 138 (177)
T ss_dssp CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEE
T ss_pred CCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEE
Confidence 58999999999975554 4443432 1358999999999999999999984 249999
Q ss_pred EEEEeCCEEEEEEEecCccchHhh-hHHHHHHhhccccC
Q 025184 219 TATAAGNRLYLFSVTGNGLQWKRH-YTDLKKIADSFRVV 256 (256)
Q Consensus 219 satv~~GrLYtl~~~a~e~rW~k~-~~~Lr~v~~SFrvv 256 (256)
++||++||||+|+++++|+||+++ ++.|++|++||+|+
T Consensus 139 ~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 139 TATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177 (177)
T ss_dssp EEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred EEEEECCEEEEEEEecCHHHhhhhHHHHHHHHHhheecC
Confidence 999999999999999999999996 99999999999985
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=4.9e-34 Score=240.02 Aligned_cols=144 Identities=24% Similarity=0.456 Sum_probs=128.4
Q ss_pred CCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCc
Q 025184 87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDD 164 (256)
Q Consensus 87 ~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~ 164 (256)
.||++| .|..+| |+|.||++|+++.++ .|++++|+|+.+ +||+|+|.|+ .+.
T Consensus 6 ~g~~~~---~D~~~g----------ysf~~P~~W~~~~~~------~g~~v~f~d~~~~~~~v~V~v~p~-------~~~ 59 (165)
T 2xb3_A 6 SGLQAY---VDSYDG----------YEFLYPRGWVQVQVE------DPVDVVFHDIIETTENVSVVVNTV-------AST 59 (165)
T ss_dssp CCEEEE---EETTTT----------EEEEEETTEEEECCC------TTEEEEEEESSCTTSEEEEEEEEC-------SSC
T ss_pred CCceEE---EcCCCC----------EEEEcCCCCeEecCC------CCceEEEECcccCCceEEEEEecC-------CCC
Confidence 799999 777777 999999999997764 278899999976 4999999996 345
Q ss_pred ccccccCCHHHHHHHhCccccCCC---cccceeEeeeEEEcCeeeEEEEEc----C-------CceEEEEEEeCCEEEEE
Q 025184 165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELE----P-------PHVLITATAAGNRLYLF 230 (256)
Q Consensus 165 ~sI~dlGspeev~~~l~~~~~g~~---~~a~ll~a~~r~~dG~~YY~yEl~----~-------pH~L~satv~~GrLYtl 230 (256)
++|+|||+||++++.|++..++++ .+++|++++.++.+|++||+||+. . +|+|+++++.+||||+|
T Consensus 60 ~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l 139 (165)
T 2xb3_A 60 KSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTL 139 (165)
T ss_dssp CCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEE
T ss_pred CChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEE
Confidence 899999999999999998877543 368999999999999999999985 2 29999999999999999
Q ss_pred EEecCccchHhhhHHHHHHhhccccC
Q 025184 231 SVTGNGLQWKRHYTDLKKIADSFRVV 256 (256)
Q Consensus 231 ~~~a~e~rW~k~~~~Lr~v~~SFrvv 256 (256)
++++||++|+++++.|++|++||+|+
T Consensus 140 ~~sape~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 140 SVSAPEERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred EEecCHHHhHHHHHHHHHHHhhEEeC
Confidence 99999999999999999999999986
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=3.2e-35 Score=249.27 Aligned_cols=147 Identities=23% Similarity=0.395 Sum_probs=131.3
Q ss_pred CCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCc
Q 025184 87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDD 164 (256)
Q Consensus 87 ~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~ 164 (256)
.||++| .|..+| |+|.||++|+++.+++ +++|.|++|+|+.+ +||+|+|+|+ ..+
T Consensus 12 ~g~~~y---~d~~~g----------y~f~~P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~-------~~~ 68 (170)
T 2lnj_A 12 ASLQRY---SDTKDG----------YEFLYPNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEI-------PSD 68 (170)
Confidence 799999 777778 9999999999987653 23588999999987 4999999996 345
Q ss_pred ccccccCCHHHHHHHhCccccCCC---cccceeEeeeEEEcCeeeEEEEEcC-------CceEEEEEEeCCEEEEEEEec
Q 025184 165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVTG 234 (256)
Q Consensus 165 ~sI~dlGspeev~~~l~~~~~g~~---~~a~ll~a~~r~~dG~~YY~yEl~~-------pH~L~satv~~GrLYtl~~~a 234 (256)
++|+|||+|+++++.|++.++.++ .+++|+++++++.||++||+|||.. .|+|+++++.+||||+|++++
T Consensus 69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~a 148 (170)
T 2lnj_A 69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLST 148 (170)
Confidence 899999999999999999877543 4689999999999999999999862 299999999999999999999
Q ss_pred CccchHhhhHHHHHHhhccccC
Q 025184 235 NGLQWKRHYTDLKKIADSFRVV 256 (256)
Q Consensus 235 ~e~rW~k~~~~Lr~v~~SFrvv 256 (256)
||++|++.++.|++|++||+|+
T Consensus 149 pe~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 149 AEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 9999999999999999999985
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.11 E-value=4.4e-05 Score=62.46 Aligned_cols=120 Identities=11% Similarity=0.119 Sum_probs=75.9
Q ss_pred ceEEecCCCCeecccccccCCCCceeEEEeCCCCC-e--EEEEEEe--cccccccCCCcccccccCCHH-HHHHHhCccc
Q 025184 111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG-R--LFVIVAP--VLRFADDLGDDATIEKIGPPE-KVINAFGPEV 184 (256)
Q Consensus 111 ~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~-~--vsVvv~p--~~rl~~~~~~~~sI~dlGspe-ev~~~l~~~~ 184 (256)
.++|.+|.+|++..+. .|..+..+ . .+++|+- + .+..+++++=.-+ +.++.-++.
T Consensus 10 Egsl~lP~gw~D~t~n-----------v~~~~~~~~~g~~~lvIsR~~~-------~~~~~l~~~~~~q~~~l~~~l~~- 70 (148)
T 1tu1_A 10 EADLEIPDAWQDQSIN-----------IFKLPASGPAREASFVISRDAS-------QGDAPFADYVARQLENAEKQLPG- 70 (148)
T ss_dssp SEEEEEETTSEECCBE-----------EEEECCBTTBCCEEEEEEEECC-------CTTSCHHHHHHHHHHHHHHHSTT-
T ss_pred CEEEeCCCCcEeeeEE-----------EEEcCCCCCCCceEEEEEeccC-------CCCCCHHHHHHHHHHHHHhhCcC-
Confidence 4899999999965543 34444432 3 6776653 2 2333443332222 111111111
Q ss_pred cCCCcccceeEeeeEEEcCeeeEEEEE--cCC----ceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184 185 IGENVEGKVLSMDVEELCGRKYYRYEL--EPP----HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255 (256)
Q Consensus 185 ~g~~~~a~ll~a~~r~~dG~~YY~yEl--~~p----H~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv 255 (256)
-+++.....+.+|..-..+|+ ... |....+....+++|+|+.+++..-|+..+..++.|++||+.
T Consensus 71 ------y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 71 ------FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp ------CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred ------cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 244444444457766555554 222 88888877766999999999999999999999999999984
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=95.96 E-value=0.27 Score=40.91 Aligned_cols=125 Identities=9% Similarity=0.056 Sum_probs=75.5
Q ss_pred ceEEecCCCCeecccccccCCCCceeEEEeCC----CCCeEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccC
Q 025184 111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASP----KKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIG 186 (256)
Q Consensus 111 ~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~----~~~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g 186 (256)
.+++.+|.||+....-+. +-+.=.+. +..|+-|.+.-+ ..+ + .|+.-..+ .+.++
T Consensus 19 ~~~v~~P~gWe~~~~~~~------~~~~~~~~~~~~F~pN~vVtv~r~-------~~~--~-----~e~~r~el-~~~~~ 77 (161)
T 3lyd_A 19 GFTVPIPETWQPDPTMGT------QFAARPHTPPQGFTPNIIGTVRRA-------ATG--A-----LHNQRTEL-DQRAT 77 (161)
T ss_dssp EEEEECCTTEEECTTSSS------SEEEEESSCCSSSCCEEEEEEEEE-------CTT--H-----HHHHHHHH-HHHHT
T ss_pred eeeccCCCCceEcCCCCc------eEEeccCCCCCCccccEEEEEEec-------CcH--H-----HHHHHHHH-HHHHh
Confidence 389999999998754221 11112122 224777777653 111 1 24333333 11111
Q ss_pred CCcccceeEeeeEEEcCeeeEEEEEc--CC----c--eEEEEEE-eCCEEEEE--EEecCccchHhhhHHHHHHhhcccc
Q 025184 187 ENVEGKVLSMDVEELCGRKYYRYELE--PP----H--VLITATA-AGNRLYLF--SVTGNGLQWKRHYTDLKKIADSFRV 255 (256)
Q Consensus 187 ~~~~a~ll~a~~r~~dG~~YY~yEl~--~p----H--~L~satv-~~GrLYtl--~~~a~e~rW~k~~~~Lr~v~~SFrv 255 (256)
.--.-++++....+.+|..-|..|+. .+ | .+..+.+ .++..|++ +++|.+.+-+...+.++.|++||+|
T Consensus 78 ~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v 157 (161)
T 3lyd_A 78 QLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTV 157 (161)
T ss_dssp TSTTCEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEE
T ss_pred hCCCcEeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEe
Confidence 11112445545568899888877764 33 3 2344444 45788877 8889999999999999999999997
Q ss_pred C
Q 025184 256 V 256 (256)
Q Consensus 256 v 256 (256)
+
T Consensus 158 ~ 158 (161)
T 3lyd_A 158 Q 158 (161)
T ss_dssp E
T ss_pred c
Confidence 4
No 6
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=66.73 E-value=16 Score=30.19 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred CHHHHHHHhCccccCCCcccceeEeeeEEEcCeeeEEEEEcCCceE--EEEEEeCCEEEEEEEe
Q 025184 172 PPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVL--ITATAAGNRLYLFSVT 233 (256)
Q Consensus 172 speev~~~l~~~~~g~~~~a~ll~a~~r~~dG~~YY~yEl~~pH~L--~satv~~GrLYtl~~~ 233 (256)
+++++.+.+...+-| +.|.+.+-...+|+..|++|+...... +-+-...|++.-....
T Consensus 33 s~e~A~~~a~~~~pg----a~I~~iele~~~G~~vYEVe~~~~g~e~ev~IDA~tG~Vl~~~~e 92 (174)
T 4exr_A 33 PYTDAINIFKDKYKD----ADIVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTE 92 (174)
T ss_dssp CHHHHHHHHHHHSTT----CEEEEEEEEEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHCCC----CEEEEEEEEEeCCEEEEEEEEEECCEEEEEEEECCCCcEeccccc
Confidence 888888887554332 356666666689999999998533222 2222334555555443
No 7
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=66.04 E-value=3.1 Score=25.91 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHH
Q 025184 41 MKRRSVLVSGASL 53 (256)
Q Consensus 41 ~sRR~aL~~~~~~ 53 (256)
.+||++|-+.+++
T Consensus 3 lsRR~FLK~~aaa 15 (35)
T 2pq4_B 3 LSRRSFMKANAVA 15 (35)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5899999865543
No 8
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=59.38 E-value=27 Score=28.77 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHhCccccCCCcccceeEeeeEEEcCeeeEEEEEcCCceEEEEEEeCCEEEEEEEecC
Q 025184 169 KIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGN 235 (256)
Q Consensus 169 dlGspeev~~~l~~~~~g~~~~a~ll~a~~r~~dG~~YY~yEl~~pH~L~satv~~GrLYtl~~~a~ 235 (256)
..-+++++....+... .+.+++.+-...+|+.||++|+. .+|+.|.+.+.+.
T Consensus 112 ~~is~~~A~~~Al~~~-----~G~v~e~eLd~d~G~~vYevei~----------~~~~~~ev~IDA~ 163 (174)
T 4exr_A 112 DIMTPQQAMEIALKEQ-----NGIVKEWSLDKDLDVTFYKIRID----------KDKNEYDIKVDSK 163 (174)
T ss_dssp TCCCHHHHHHHHHHHS-----CSEEEEEEEEEETTEEEEEEEEE----------ETTEEEEEEEETT
T ss_pred CCcCHHHHHHHHHHhC-----CCeEEEEEEEEeCCEEEEEEEEE----------ECCEEEEEEEECC
Confidence 3447777776654443 24566766666799999999994 4567777766654
No 9
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=59.28 E-value=7.6 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=23.3
Q ss_pred eEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEE
Q 025184 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIV 151 (256)
Q Consensus 112 Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv 151 (256)
||..||.+|.|..-. +=-.-|.||.. ||..+.-
T Consensus 14 fs~~yP~~W~EfEd~-------E~sflFynp~~WtGNfRISa 48 (269)
T 3hlz_A 14 FSMNYPSDWNEFEDG-------EGSFLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEEECTTCEEECCC-------TTEEEEECSSSCCCEEEEEE
T ss_pred eEEecCCCcccccCC-------CCceeeeChhhcccceEEEe
Confidence 999999999996631 11236899987 6765443
No 10
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=43.73 E-value=64 Score=24.54 Aligned_cols=40 Identities=10% Similarity=-0.028 Sum_probs=30.8
Q ss_pred EEEcCeeeEEEEEcCCce-----EEEEEEeCCEEEEEEEecCccc
Q 025184 199 EELCGRKYYRYELEPPHV-----LITATAAGNRLYLFSVTGNGLQ 238 (256)
Q Consensus 199 r~~dG~~YY~yEl~~pH~-----L~satv~~GrLYtl~~~a~e~r 238 (256)
-..||+.|+.|.|..... ...+-+.+|+.....+.||++-
T Consensus 22 I~vdGk~~~~i~L~~~~~i~i~g~n~IeI~dg~vrv~es~CPdki 66 (104)
T 4esn_A 22 VTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQL 66 (104)
T ss_dssp EEETTEEEEEEETTSCEEEEETTTEEEEEETTEEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCcEEEECCcEEEEEECCEEEEEECCCCCcc
Confidence 357999999999865421 2455689999999999999863
No 11
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=40.72 E-value=68 Score=24.15 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=30.4
Q ss_pred EEEcCeeeEEEEEc---CC--------c-eEEEEEEeCCEEEEEEEecCccc
Q 025184 199 EELCGRKYYRYELE---PP--------H-VLITATAAGNRLYLFSVTGNGLQ 238 (256)
Q Consensus 199 r~~dG~~YY~yEl~---~p--------H-~L~satv~~GrLYtl~~~a~e~r 238 (256)
-..||+.|+.|.|. .+ . ....+-+.+|+.....+.||++-
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~~~i~~~~G~~n~ieI~dg~vrv~es~CPdki 63 (101)
T 3ld7_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQV 63 (101)
T ss_dssp EEETTEEEEEEECTTCBSEEEEEEECSTTCEEEEEEETTEEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCCCCEEEEEEcCCCCEEEEEEECCEEEEEECCCCCcc
Confidence 35799999999886 22 1 13466789999999999999874
No 12
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=35.60 E-value=96 Score=23.86 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=30.3
Q ss_pred EEEcCeeeEEEEEcCC------------ceEEEEEEeCCEEEEEEEecCccc
Q 025184 199 EELCGRKYYRYELEPP------------HVLITATAAGNRLYLFSVTGNGLQ 238 (256)
Q Consensus 199 r~~dG~~YY~yEl~~p------------H~L~satv~~GrLYtl~~~a~e~r 238 (256)
...||+.|+.|.|... .....+-|.+|+.....+.||++-
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~i~i~~~~G~~n~IeIkdg~vrv~es~CPdki 63 (114)
T 2kpp_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQV 63 (114)
T ss_dssp EEETTEEEEEEECTTCCSEEEEEEEEETTEEEEEEEESSCEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCCcceEEEEecCCCCEEEEEEECCEEEEEECCCCCee
Confidence 4589999999998432 123456689999999999999874
No 13
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=30.55 E-value=34 Score=27.83 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=26.3
Q ss_pred cccccCCHHHHHHHhCcccc-CCCc--ccceeEeeeEEEcCeeeEEEEE
Q 025184 166 TIEKIGPPEKVINAFGPEVI-GENV--EGKVLSMDVEELCGRKYYRYEL 211 (256)
Q Consensus 166 sI~dlGspeev~~~l~~~~~-g~~~--~a~ll~a~~r~~dG~~YY~yEl 211 (256)
.|.=|| .++++.+.+.+- |..+ ++.|---.-.+.+|+.||.|.+
T Consensus 89 ~V~vfG--g~lAE~i~~ylkkG~rVlVeGRLrmn~~~d~~gkk~Y~~p~ 135 (148)
T 3stb_C 89 TVRVFD--SDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPV 135 (148)
T ss_dssp EEEECS--HHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEC--ChHHHHHHHHhcCCCEEEEEEEEEcceeECCCCCEEeeccE
Confidence 467777 444554423222 4443 5565443445689999999996
No 14
>4drr_A Outer capsid protein VP4; viral protein, cell attachment factor, histo blood antigen, galectin-fold; 1.50A {Rotavirus SP} PDB: 4drv_A* 4ds0_A*
Probab=26.27 E-value=63 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.6
Q ss_pred EEcCeeeEEEE-EcCCceEEEEEEeCCEEEEEEEecCc
Q 025184 200 ELCGRKYYRYE-LEPPHVLITATAAGNRLYLFSVTGNG 236 (256)
Q Consensus 200 ~~dG~~YY~yE-l~~pH~L~satv~~GrLYtl~~~a~e 236 (256)
...+.+|+.+. |.++|-|..+--.+||||++.-..|.
T Consensus 85 ~s~~~~y~~~~tL~S~tkL~a~mK~gGrl~ty~GeTPn 122 (163)
T 4drr_A 85 LEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPN 122 (163)
T ss_dssp SSTTSCCEEEEEEEESSCCEEEEEETTEEEEEEEETTS
T ss_pred ccCCcceEEeeeecCcceeeEEEEeCCEEEEEEcCCCC
Confidence 34456787776 56789999998899999999988775
No 15
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization antigen, spike protein; 1.60A {Human rotavirus A} PDB: 2dwr_A
Probab=25.56 E-value=85 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred EEcCeeeEEEE-EcCCceEEEEEEeCCEEEEEEEecCcc
Q 025184 200 ELCGRKYYRYE-LEPPHVLITATAAGNRLYLFSVTGNGL 237 (256)
Q Consensus 200 ~~dG~~YY~yE-l~~pH~L~satv~~GrLYtl~~~a~e~ 237 (256)
...+.+|..+. |.++|-|..+--.+||||++.-..|..
T Consensus 86 ~s~~~~y~~~~~L~S~tKL~a~mK~ggrl~ty~GeTPna 124 (164)
T 2aen_A 86 GSSQGDFSNRRTLTSSNRLVGMLKYGGRVWTFHGETPRA 124 (164)
T ss_dssp SSTTCCCEEEEEEEESSCEEEEEEETTEEEEEEEETTSC
T ss_pred ccCCcceEeeccccCchhheeeEecCCEEEEEECCCCCc
Confidence 34566776666 567899999988999999999887753
No 16
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=22.05 E-value=36 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.562 Sum_probs=13.7
Q ss_pred EeCCEEEEEEEecCccchHh
Q 025184 222 AAGNRLYLFSVTGNGLQWKR 241 (256)
Q Consensus 222 v~~GrLYtl~~~a~e~rW~k 241 (256)
..+|+.|-++..+.+.+|.+
T Consensus 19 ~~~G~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEK 38 (41)
T ss_dssp ETTTEEEEEETTTTEEEESC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 34567777777777777765
No 17
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=21.68 E-value=21 Score=22.41 Aligned_cols=20 Identities=10% Similarity=0.546 Sum_probs=13.9
Q ss_pred EeCCEEEEEEEecCccchHh
Q 025184 222 AAGNRLYLFSVTGNGLQWKR 241 (256)
Q Consensus 222 v~~GrLYtl~~~a~e~rW~k 241 (256)
..+|+.|-++..+.+.+|++
T Consensus 17 ~~~G~~YYyN~~T~eS~We~ 36 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTK 36 (40)
T ss_dssp CTTSCEEEEETTTCCEESSC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 44567777777777777765
No 18
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=21.62 E-value=26 Score=28.91 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHh
Q 025184 39 GVMKRRSVLVSGASLIS 55 (256)
Q Consensus 39 ~~~sRR~aL~~~~~~~a 55 (256)
..++||++|-+++++++
T Consensus 8 ~~~~rr~fl~~~~~a~~ 24 (175)
T 4aay_B 8 VDIGRRQFLRGGALAAA 24 (175)
T ss_dssp -----------------
T ss_pred ccccHHHHhhhhHHhhh
Confidence 36799999997655433
No 19
>1kqr_A VP4; spike protein, outer capsid, sialic AC hemagglutinin, cell attachment, neutralization antigen, LEC galectin fold, viral protein; HET: MNA; 1.40A {Rhesus rotavirus} SCOP: b.29.1.14 PDB: 2p3k_A* 2p3i_A* 2p3j_A* 3sit_A* 3sis_A* 2i2s_A*
Probab=21.49 E-value=87 Score=26.21 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=29.9
Q ss_pred EEcCeeeEEEE-EcCCceEEEEEEeCCEEEEEEEecCcc
Q 025184 200 ELCGRKYYRYE-LEPPHVLITATAAGNRLYLFSVTGNGL 237 (256)
Q Consensus 200 ~~dG~~YY~yE-l~~pH~L~satv~~GrLYtl~~~a~e~ 237 (256)
...+.+|..+. |.++|-|..+--.+||||++.-..|..
T Consensus 101 ~s~~~~Y~~~~~L~S~tKL~a~mK~gGrl~ty~GeTPna 139 (179)
T 1kqr_A 101 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNV 139 (179)
T ss_dssp SSTTSCCEEEEEEEESSCCEEEEEETTEEEEEEEETTSC
T ss_pred ccCCcceEeecccccchheeeeEecCCEEEEEEccCCCc
Confidence 44566777776 567899999988999999999887753
No 20
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=20.74 E-value=53 Score=21.96 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=19.0
Q ss_pred EeeeEEEcCeeeEEEEE------------cCCceEEEEEE
Q 025184 195 SMDVEELCGRKYYRYEL------------EPPHVLITATA 222 (256)
Q Consensus 195 ~a~~r~~dG~~YY~yEl------------~~pH~L~satv 222 (256)
+.--++.||+.||+|.- .++|+++..-+
T Consensus 13 t~ll~dddg~q~~e~h~glslsdfev~ygn~~~eiikl~l 52 (56)
T 2le2_A 13 TMLLQDDDGKQYYEYHKGLSLSDFEVLYGNTADEIIKLRL 52 (56)
T ss_dssp EEEEECTTSCEEEEEEEEECHHHHHHHHHHSCSCEEEEEE
T ss_pred EEEEEcCCCceeeeeecCcccccEEEEeCCChhHeeEEEE
Confidence 33457889999999873 12477776543
Done!