BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025185
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870
OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1
Length = 257
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/256 (69%), Positives = 217/256 (84%), Gaps = 2/256 (0%)
Query: 2 ATRLFSRSKIPILASIVLQNLTKNPS-KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR 60
A R+ SR K P ASI QN+T+NPS SF KPK+ + + + ++HDGR
Sbjct: 3 AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 61
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
PRG LWRGKKLIGKEALFVILGLKR K+D+EKL KFIKTHV RLLK+D++AV+ ELERQE
Sbjct: 62 PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 121
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
ET LA+K+F++I+KQ+WYQPD ++YKDLI++LA++ +M+EAM +WE M+KE+LFPDSQTY
Sbjct: 122 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 181
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
TEVIRGFL+DG PADAMN+YEDM+KSPDPPEELPFR+LLKGLLPHPLLR+KVKKDFEELF
Sbjct: 182 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 241
Query: 241 PEKHAYDPPEEIFGKL 256
PEKHAYDPPEEIFG+
Sbjct: 242 PEKHAYDPPEEIFGRC 257
>sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350
OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
Length = 196
Score = 180 bits (457), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 127/181 (70%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+ KE L LKR + +L +FI +HV RLLK D+V+VL E +RQ + L +K++++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R++ WY+PD + Y+D+++ LAR K++E +VWE ++KE++ D T+ +++RGFL +
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P +AM +Y +M +SPD P LPFR++LKGL+P+P LR KVK DF ELFP YDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 252 I 252
I
Sbjct: 181 I 181
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + ++D + DA Y L+ L +G+ ++A ++ M D+ P+ T+T VI
Sbjct: 193 AVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F+K+G ++AM +YE+M + P+ + L+ GL H
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 292
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD IY +I + G +N+A+++++ M ++ + D+ TY ++ G G +DA
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ DM+ P + F ++ + S+ K +EE+ + DP + L
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVKEGKF-SEAMKLYEEM--TRRCVDPDVFTYNSL 285
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L G+++EA Q+ + M + PD TY +I GF K + +
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + + +++G
Sbjct: 337 FREMAQRGLVGDTITYNTIIQG 358
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ +++E +++ M + L D+ TY +I+G+ + G P A I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + ILL GL +
Sbjct: 372 FSRMDSRPNIR---TYSILLYGLCMN 394
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I + GK +EAM+++E M + + PD TY +I G G +A +
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P+ + + L+ G
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFC 325
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L ++ +A+ ++E+M+K ++ D TY VI G K G+ DA +
Sbjct: 378 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ + P+ + + ++ G
Sbjct: 438 LFRSLSCKGLKPDVVSYTTMISGFC 462
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD LI + ++ +A+ + M + PD Y +I G K G DA+
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDPPE 250
+++ M + + + + L+ GL L+R V +D + P +
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD---IVPNVITFTAVI 251
Query: 251 EIFGK 255
++F K
Sbjct: 252 DVFVK 256
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y +I L R + A+ V M K PD T + +I GF + DA+++
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
M + P+ + + ++ G L+ V+
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 195
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K + + D Y +I + + G + +A ++ S+ + L PD +YT +I
Sbjct: 400 ALVLFENMQKSE-IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMI 458
Query: 185 RGFLK 189
GF +
Sbjct: 459 SGFCR 463
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L+E ++ + + K+F +R +D PD + ++ R+G +++A+ + S+++
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVV-PDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD+ YT +I+G+ + G + AMN+ +M++ + + + +L GL +L
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML-G 462
Query: 231 KVKKDFEE-----LFPEKHA 245
+ K F E LFP+ +
Sbjct: 463 EADKLFNEMTERALFPDSYT 482
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G M EA ++ +M + P TY VI G K G A +
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +M++S P+ +R LL
Sbjct: 328 FAEMLRSGLSPDSTTYRSLL 347
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 127 KIFDIIRKQDWYQ----PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
K F +++K + Q PD + Y ++ R +M EA V M + + PD TYT
Sbjct: 638 KAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTC 697
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
+I GF+ + +A I+++M++ P++
Sbjct: 698 MINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ AL G + EA +VW+ M +++ P +I+G+ + G+ +D +
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E MI P+ + + L+ G +
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFV 631
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
MD+V +L L +++ A K+F+ + ++ + PD+Y LI + G + A
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF-PDSYTLTILIDGHCKLGNLQNA 499
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M++++ M+++ + D TY ++ GF K G A I+ DM+ P + + IL+
Sbjct: 500 MELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNA 559
Query: 222 LLP 224
L
Sbjct: 560 LCS 562
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y Y +I L + GK A +V+ M + L PDS TY ++ K G +
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
++ DM P+ + F ++
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMS 383
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ + G ++ A ++W M +++ P +Y+ ++ G A+A ++
Sbjct: 514 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVW 573
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++MI P + ++KG
Sbjct: 574 DEMISKNIKPTVMICNSMIKG 594
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGS 192
+ + PD Y LI R M++A + + M +E L PD TY ++ GF +
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A + MI+ P+ + ++ G +
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI R G ++ AM + M ++ D TY ++ G K +A +
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + P+ IL+ G
Sbjct: 468 FNEMTERALFPDSYTLTILIDG 489
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 36/85 (42%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y ++ AL + GKM + ++++ ++PD TY +I + G +A +
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
M P + ++ GL H
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKH 318
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P I +I R+G ++ E M E PD +Y +I GF+++ + + A
Sbjct: 582 KPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFG 641
Query: 199 IYEDMIKSPDP--PEELPFRILLKGLL 223
+ + M + P+ + +L G
Sbjct: 642 LVKKMEEEQGGLVPDVFTYNSILHGFC 668
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y LI L GK EA+Q+ M ++D P++ TY +I KDG ADA+
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I E M K P+ + + ILL GL
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCA 399
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI A + GKM+EAM + M+ L D YT +IRGF G +++++++
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 208 DPPEELPFRILLKGLL 223
D P + + L++G
Sbjct: 278 DSPCAITYNTLIRGFC 293
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + Y L+ +L + G +++A +++E M++++ FPD ++ +I G LK G A +
Sbjct: 526 QPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAES 585
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M ++ P+ + L+ L
Sbjct: 586 LLVGMSRAGLSPDLFTYSKLINRFL 610
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+R D Y +I +TG +N A + MR +L P Y ++ K+
Sbjct: 490 IVRNSDTYTA-------MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
GS A ++E+M + + P+ + F I++ G L ++S
Sbjct: 543 GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I+D++ ++ D L+ + + G +N+AM++W+ + + +S TYT +I
Sbjct: 443 ALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMI 501
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
GF K G A + M S P + LL L L + + FEE+
Sbjct: 502 DGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL-DQAWRLFEEMQRDNN 560
Query: 240 FPEKHAYD 247
FP+ +++
Sbjct: 561 FPDVVSFN 568
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +++ ++D +P+A Y +I L + G + +A+++ E M+K PD+ TY ++
Sbjct: 336 ALQLLNLMIEKD-EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394
Query: 185 RGFLKDGSPADAMNIYEDMIK--SPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G G +A + M+K S P+ + + L+ GL L + D +L E
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL--DIYDLLVE 452
Query: 243 K 243
K
Sbjct: 453 K 453
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D +Y LI G+++ +++ + + P + TY +IRGF K G +A
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASE 303
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+E MI+ P + L+ GL
Sbjct: 304 IFEFMIERGVRPNVYTYTGLIDGLC 328
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTE 182
AV+I ++++K+ +PD Y L+ L G ++EA ++ M K+ + PD +Y
Sbjct: 371 AVEIVELMKKR-RTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNA 429
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I G K+ A++IY+ +++ + + ILL L
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTL 470
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y + L+ L R + +A+ + MR+ L PD +Y VIRGF + A+ +
Sbjct: 141 NVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELA 200
Query: 201 EDMIKSPDPPEELPFRILL 219
+M S + + IL+
Sbjct: 201 NEMKGSGCSWSLVTWGILI 219
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
D +L L ++ A ++F+ +++ + + PD + +I + G + A +
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKSAESLLVG 589
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
M + L PD TY+++I FLK G +A++ ++ M+ S P+
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 61.6 bits (148), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y++ LI A A+ GK+++AM V+ MR++ L P++ TY VI K G DAM
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ GL
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGL 451
Score = 54.3 bits (129), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + +L+ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 54.3 bits (129), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+F+++ + +P+ Y LI GKM+EAM++ M L P++
Sbjct: 488 KEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNT 546
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLF 592
Score = 47.8 bits (112), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILI 378
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY+ ++ K+G +A I
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQG 345
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+Y + +S E + I+L H L ++K+ D ++F
Sbjct: 603 LYVRITESGTQIELSTYNIIL-----HGLCKNKLTDDALQMF 639
Score = 39.3 bits (90), Expect = 0.026, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
P+ + Y L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAAL 241
Score = 38.9 bits (89), Expect = 0.037, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G ++A + M + PD TY +I K + AM +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + +L G
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHG 275
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + A+ +F +R+Q P+A Y +I L ++G++ +AM +E M E L P +
Sbjct: 383 KQGKVDQAMLVFSKMRQQG-LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 178 QTYTEVIRGF 187
Y +I G
Sbjct: 442 IVYNSLIHGL 451
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y LI R G+++ ++ K+ D+ +T +++G D +D
Sbjct: 81 DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140
Query: 196 AMNI-YEDMIKSPDPPEELPFRILLKGL 222
AM+I M + P + ILLKGL
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGL 168
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIFD + K+ +P+ Y L+ A G + E + + M + + PD ++ +I
Sbjct: 320 ARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378
Query: 185 RGFLKDGSPADAMNIYEDM 203
+ K G AM ++ M
Sbjct: 379 CAYAKQGKVDQAMLVFSKM 397
Score = 32.7 bits (73), Expect = 2.4, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
ER EE IL + I + + +I + + G++ E+ +++E M + + P+
Sbjct: 458 ERAEELILEMLDRGICL-------NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY +I G+ G +AM + M+ P + + L+ G
Sbjct: 511 VITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 384 AKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y+DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRL-DKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410
Query: 254 GK 255
K
Sbjct: 411 CK 412
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y L+ ++++A Q++E M +D FPD TY +I
Sbjct: 349 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+GF K D ++ +M + + + L++GL H +K F+++ +
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 464
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 557
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++++ M K + PD TY ++ GF
Sbjct: 320 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + + L+KG +SK +D ELF E
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG-----FCKSKRVEDGTELFRE 425
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ +T LA+ + + + + D I+ +I +L + +++A+ +++ M
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + P+ TY+ +I G +DA + DMI+ P + F L+
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 488
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 489 ALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P + L++ L
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ P+S TY +IR L+DG A +
Sbjct: 537 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 596
Query: 199 IYEDM 203
+ +M
Sbjct: 597 LIREM 601
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150
EK+Q+ H L + I R+ + LA+ + + K Y+P L+
Sbjct: 109 EKMQRLEIVHGLYTYNILINCFC----RRSQISLALALLGKMMKL-GYEPSIVTLSSLLN 163
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
++++A+ + + M + PD+ T+T +I G ++A+ + + M++ P
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223
Query: 211 EELPFRILLKGLL 223
+ + +++ GL
Sbjct: 224 NLVTYGVVVNGLC 236
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K F + +D PD Y +I + G M EA +++ M + L PDS T+TE+I
Sbjct: 370 ASKFFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
G+ K G DA ++ MI++ P + + L+ GL L S
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ K+ +P++YIY +I L R K+ EA + + M ++ + PD+ YT +I GF K G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + +M P+ L + ++ G
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFC 397
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y ++ L ++G + EA+++ L D+ TYT ++ + K G A
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I ++M+ P + F +L+ G H +L
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A + + M D+ PD TYT +I GF + G +A +
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M P+ + F L+ G
Sbjct: 409 FHEMFCKGLEPDSVTFTELING 430
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+ + +LI + G M +A +V M + P+ TYT +I G K+G A
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M K P + ++ GL + VK
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y ++ R G++++ ++ E M+++ L P+S Y +I + A+A
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+ +MI+ P+ + + L+ G +R+ K F E H+ D
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK-----FFYEMHSRD 381
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y LI L + G ++ A ++ M K L P+ TY ++ G K G+
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 508
Query: 195 DAMNI 199
+A+ +
Sbjct: 509 EAVKL 513
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
D Y L+ A ++G+M++A ++ + M + L P T+ ++ GF G D
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ M+ P F L+K
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVK 604
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + L+ + A +++ M + PD +TY +++G K + +A +
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 653
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M + +L+KG L
Sbjct: 654 FQEMKGKGFSVSVSTYSVLIKGFL 677
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y++L+ + M EA +++ M+ + TY+ +I+GFLK +A +
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688
Query: 200 YEDM 203
++ M
Sbjct: 689 FDQM 692
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A KI D ++K + P+ Y Y L+ + GK+ EA Q ++ ++K L D+
Sbjct: 280 RAGEVERAKKILDFMKK-NGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDT 338
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
YT ++ F ++G +AM + +M S + L + ++L+GL
Sbjct: 339 VGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPDSQTYTEVIRGFLKDGSPADAM 197
QP+ I+ L+ + G +N A V E M++ + +P+S TY+ ++ +A+
Sbjct: 193 QPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAV 252
Query: 198 NIYEDMIK----SPDPPEELPFRILLKGLL 223
++EDMI SPDP + F +++ G
Sbjct: 253 ELFEDMISKEGISPDP---VTFNVMINGFC 279
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + FD ++K + D Y L+ R G+ +EAM++ M+ D+ TY ++
Sbjct: 322 AKQTFDEVKKTG-LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVIL 380
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
RG +G +A+ + + + +RI+L L + L VK
Sbjct: 381 RGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVK 429
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 48/96 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + ++ PD + +I R G++ A ++ + M+K P+ Y+ ++
Sbjct: 251 AVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALM 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
GF K G +A ++++ K+ + + + L+
Sbjct: 311 NGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMN 346
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P++ Y L+ L + EA++++E M KE + PD T+ +I GF + G A
Sbjct: 230 PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK 289
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I + M K+ P + L+ G ++ + K+ F+E+
Sbjct: 290 ILDFMKKNGCNPNVYNYSALMNGFCKVGKIQ-EAKQTFDEV 329
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R+ A FD ++ D ++PD +Y +L+ R G+++EA +V++ M+
Sbjct: 227 VISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLA 284
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ P+ TY+ VI + G + A +++ DM+ S P + F L++
Sbjct: 285 GIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMR 333
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV F+ R +D+ PD + +I L+R + +EA ++S+ K+ PD YT +
Sbjct: 205 AVHCFN--RMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+RG+ + G ++A ++++M + P + I++ L
Sbjct: 262 VRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALC 301
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + +L+ + G+ + +QV+ M+K PD+ TY +I +D + +A+ +
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382
Query: 200 YEDMIK 205
MIK
Sbjct: 383 LNTMIK 388
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D PD Y LI L +G+ ++A ++ M K +++PD T+ +I +K+G
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++A YE+MI+ P+ + + +L+ GL + L D EE+F
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL------------------DEAEEMF 314
Query: 254 G 254
G
Sbjct: 315 G 315
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+ IY +I L ++ +++ A+ + M K+ + PD TY +I G G +DA
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M K P+ F L+ + + S+ ++ +EE+ + + DP
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRV-SEAEEFYEEMI--RRSLDP 289
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ L GK+ +A+ + M+K + D TY +IRG K G ADA +
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
IY + P+ + ++ GL L R
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLYKKGLRR 483
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + K++ Y PD + + LI A + G+++EA + +E M + L PD TY+ +I
Sbjct: 240 ATRMVSCMTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G +A ++ M+ P+ + + IL+ G
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILING 335
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ K+ M+++ M + + ++ TYT +I+G+ + G A I
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M+ P + + +LL GL +
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDN 409
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +++EA +++ M + FPD TY+ +I G+ K M +
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + IL++G
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQG 370
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI R GK+N A +++ M + P+ TY ++ G +G A+ I DM
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQ 423
Query: 205 KSPDPPEELPFRILLKGLL 223
K+ + + + I+++G+
Sbjct: 424 KNGMDADIVTYNIIIRGMC 442
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ D Y +I + + G++ +A ++ S+ + L PD TYT ++ G K G
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLR 482
Query: 194 ADAMNIYEDMIKSPDPPEEL 213
+A ++ M + P E
Sbjct: 483 READALFRKMKEDGILPNEC 502
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 309 AKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+++DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRL-DKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335
Query: 254 GK 255
K
Sbjct: 336 CK 337
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I++ PD + Y LI ++++A Q++E M +D FPD TY +I+GF K
Sbjct: 280 DMIKRS--IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D ++ +M + + + L++GL H +K F+++ +
Sbjct: 338 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 389
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 482
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++ + M K + PD TY +I GF
Sbjct: 245 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM 302
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + L+KG +SK +D ELF E
Sbjct: 303 HDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG-----FCKSKRVEDGTELFRE 350
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ PDS TY +IR L+DG A +
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 521
Query: 199 IYEDM 203
+ +M
Sbjct: 522 LIREM 526
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 129 FDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F+++ K + + D I+ +I +L + +++A+ +++ M + + P+ TY+ +I
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +DA + DMI+ P + F L+
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 413
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 414 ALEVFDYMQKSEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P+ + L++ L
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 511
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150
EK+Q+ +H L + I R+ + LA+ + + K Y+P L+
Sbjct: 34 EKMQRLGISHNLYTYNILINCFC----RRSQISLALALLGKMMKL-GYEPSIVTLSSLLN 88
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
++++A+ + + M + PD+ T+T +I G ++A+ + + M++ P
Sbjct: 89 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 148
Query: 211 EELPFRILLKGLL 223
+ + +++ GL
Sbjct: 149 NLVTYGVVVNGLC 161
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L R G ++EA ++ MR + P TY V+ GF K DA+N+
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M+ + P E + +L++G+
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGI 553
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ +I+ K + QPD + Y LI + ++++A +V + MR +D PD+ TY +I
Sbjct: 143 AVRVMEILEK--FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI 200
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G A+ + ++ P + + IL++ +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PDAY Y LI A R G+++ A++ E+M + PD Y V+ K+G
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ I+ + + P + + L
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R +D + PD Y +I +L GK++ A++V + ++ P TYT +I
Sbjct: 177 ATRVLDRMRSKD-FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILI 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +G +A+ + ++M+ P+ + +++G+ ++
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L R GK+ EAM + + M+++ L PD+ +Y +I F ++G A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
E MI P+ + + +L L +
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKN 416
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + + D QP Y LI A G ++EA+++ + M L PD TY +
Sbjct: 211 LALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRG K+G A + ++ P+ + + ILL+ LL
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +++ + ++ +A+ V ESM P+ TYT +I G G A+AM
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563
Query: 198 NIYEDMIKSPDPPEELPFRIL 218
+ D+++ D E F+ L
Sbjct: 564 ELANDLVR-IDAISEYSFKRL 583
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y ++ L + GK ++A++++ + + P+S +Y + G
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ +M+ + P+E+ + ++ L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLC 484
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 127 KIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ F+++R + +PD Y L+ AL GK E ++ M E P+ TY+ +I
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+DG +AMN+ + M + P+ +
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D + + +PD + Y +I + + G ++ A ++ ++ + PD +Y ++
Sbjct: 247 ALKLMDEMLSRGL-KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHPLLRSKVKKDFEEL 239
R L G + + M P + + IL+ G + + K+ K+ + L
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGL 364
Query: 240 FPEKHAYDP 248
P+ ++YDP
Sbjct: 365 TPDAYSYDP 373
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 95 KFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
+F++T + DIV VL L + + A++IF + + P++ Y + A
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC-SPNSSSYNTMFSA 447
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L +G A+ + M + PD TY +I ++G +A + DM P
Sbjct: 448 LWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPS 507
Query: 212 ELPFRILLKGLL 223
+ + I+L G
Sbjct: 508 VVTYNIVLLGFC 519
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + E +A+++ + + K+ D Y L+ L +G+ ++A ++ M K + P
Sbjct: 186 LCKNGELNIALELLNEMEKKGL-GADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINP 244
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D T+T +I F+K G+ +A +Y++MI+S P + + ++ GL H L KK
Sbjct: 245 DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD-AKKT 303
Query: 236 FE-----ELFPEKHAYDPPEEIFGKL 256
F+ FP Y+ F K
Sbjct: 304 FDLMASKGCFPNVVTYNTLISGFCKF 329
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+ + Y+P+ +Y LI L + G++N A+++ M K+ L D TY ++ G
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +DA + DM+K P+ + F L+
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALI 253
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K FD++ + + P+ Y LI + ++E M++++ M E D TY +I
Sbjct: 300 AKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
G+ + G A++I+ M+ P+ + ILL GL + + S + K
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y +I L G++ +A + ++ M + FP+ TY +I GF K
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVD 333
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ M +++ M + + L+ G LR
Sbjct: 334 EGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + D + Y LI + GK+ A+ ++ M + PD T+ ++ G +G
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ ++DM +S + + I++ GL
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLC 432
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y + LI R +++ A+ V M K P T+ ++ GF DA ++
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
M+KS P + + L+ GL +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKN 189
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 131 IIRKQDWYQPDAYI----YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+++ D + + YI Y +I L + K+ +A +++ + E + PD++TYT +I G
Sbjct: 406 LVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Query: 187 FLKDG 191
K+G
Sbjct: 466 LCKNG 470
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + +A K+ D + + PD Y ++ L ++G +++A V+ M + ++ PD+
Sbjct: 372 REGNSSVAKKLLDQMTELGL-SPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDA 430
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y +I G + G +A+ ++EDM P+EL F+ ++ GL+ L + K
Sbjct: 431 ISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYK 486
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L R+G++ EA++++E M+ ++ PD T+ +I G ++ + A +
Sbjct: 428 PDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKV 487
Query: 200 YEDMI 204
++ M+
Sbjct: 488 WDQMM 492
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + + + L R K+ A+Q + M + PD +YT +I G + G DA+ I
Sbjct: 112 PDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+S P+ L+ GL
Sbjct: 172 WNAMIRSGVSPDNKACAALVVGLC 195
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y LI R +A +++E MR++ + + TYT +I+ FL++G+ + A +
Sbjct: 323 CDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKL 382
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF--------EELFPEKHAYDP 248
+ M + P+ RI +L H V K + E+ P+ +Y+
Sbjct: 383 LDQMTELGLSPD----RIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNS 435
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R+ + AV+ F Q +PD Y LI L R GK+ +A+++W +M + + P
Sbjct: 124 LCRENKVGFAVQTF-FCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSP 182
Query: 176 DSQTYTEVIRGFL 188
D++ ++ G
Sbjct: 183 DNKACAALVVGLC 195
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +Q AV++ + ++ Y + +IY LI L + GK EAM +W M ++ P
Sbjct: 337 LVKQRRATDAVRLLSSMEERG-YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP 395
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ Y+ ++ G ++G P +A I MI S P + L+KG L V+
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y L+ L R GK NEA ++ M P++ TY+ +++GF K G +A+
Sbjct: 394 KPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K+ + + +L+ GL
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLC 478
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+AY Y L+ +TG EA+QVW+ M K + Y+ +I G G +AM +
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMV 489
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M+ P+ + + ++KGL + + +K E L E+ P
Sbjct: 490 WSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L + ER +E +L + D ++ + P IY LI L + G + ++ ++M +
Sbjct: 232 LCKEERIDEAVL---LLDEMQSEGC-SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P+ TY +I G G A+++ E M+ S P ++ + L+ GL+
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLV 338
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ L + +++EA+ + + M+ E P Y +I G K G +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P E+ + L+ GL
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLC 303
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + + +A+++ SM + + Y+ +I G K+G +AM++
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M + P + + +L+ GL
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLC 408
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L GK+++A+ + E M P+ TY +I G +K DA+ +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M + + + +L+ GL
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGL 372
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + +I AL + ++ A++V+ M + PD TY ++ G K+ +A+
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ ++M P + + +L+ GL L ++V K + +F
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDL-TRVTKLVDNMF 284
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 129 FDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+D++R ++ ++P+A Y LI AL + +M EAM+V+ M + + D TYT ++ G
Sbjct: 307 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 366
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
F K G + +DMIK P EL + H ++ + K+ FEE
Sbjct: 367 FCKWGKIDKCYIVLDDMIKKGLMPSELTY--------MHIMVAHEKKESFEECL 412
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+ +R + + + + L+ R GKM EA V M + PD YT ++
Sbjct: 237 AAKLFEDMRMR--FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLL 294
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ G ADA ++ DM + P + +L++ L
Sbjct: 295 SGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALC 333
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +L+ A GKM +A + MR+ P++ YT +I+ K +AM
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + + + + L+ G
Sbjct: 343 KVFVEMERYECEADVVTYTALVSGFC 368
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ E++E +++ + +R+ + Y PD IY +I + G++ EA+++W M +
Sbjct: 398 IMVAHEKKESFEECLELMEKMRQIE-YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEEN 456
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
L P T+ +I G G +A + +++M+
Sbjct: 457 GLSPGVDTFVIMINGLASQGCLLEASDHFKEMV 489
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADA 196
++PD Y++ L+ AL + G + +A +++E MR FP + + +T ++ G+ + G +A
Sbjct: 214 FEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR--FPVNLRYFTSLLYGWCRVGKMMEA 271
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAY 246
+ M ++ P+ + + LL G + LLR ++ FE P + Y
Sbjct: 272 KYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFE---PNANCY 325
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+K P Y +++A + E +++ E MR+ + PD Y VIR K
Sbjct: 382 DMIKKG--LMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 439
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G +A+ ++ +M ++ P F I++ GL L
Sbjct: 440 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCL 478
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L +++R EE A+K+F + + + + D Y L+ + GK+++ V + M
Sbjct: 328 LIQALCKVDRMEE---AMKVFVEMERYEC-EADVVTYTALVSGFCKWGKIDKCYIVLDDM 383
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
K+ L P TY ++ K S + + + E M
Sbjct: 384 IKKGLMPSELTYMHIMVAHEKKESFEECLELMEKM 418
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTE 182
L + F KQ Y +YK ++ L++ + + E MRKE+ + + +
Sbjct: 129 LGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVV 188
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELF 240
+++ F A+ + ++M K P+E F LL L H ++ K +D F
Sbjct: 189 LVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRF 248
Query: 241 P 241
P
Sbjct: 249 P 249
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ L +L +++ + A+++FD++R+Q +YQP Y L++ L ++G+ N A ++++ M
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+E L P + YT ++ + + DA +I + M P P+ + LLK +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACV 206
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ +L +GK+ +AM+V + M + D +PD TYT +I +D AM
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M P+ + + +L+ G+ L +K
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R +D +PD Y L+ L+R GK++EA++ + +
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ T+ ++ G K A++ MI P E + IL++GL
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D + ++D Y PD Y LI A R + AM++ + MR PD TY ++
Sbjct: 223 AMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV 281
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G K+G +A+ DM S P + I+L+ +
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I + + + P Y +I LA+ GK +A+++ + MR +DL PD+ TY+ ++
Sbjct: 433 AVEILNQLSSKGC-SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++G +A+ + + + P + F ++ GL
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K Q QP++ Y L+ + KM+ A++ E M +PD TY ++
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG DA+ I + P + + ++ GL
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R +T A KI +I+ PD Y +I + G++N A+ V + M + PD
Sbjct: 149 RLGKTRKAAKILEILEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDV 204
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY ++R G AM + + M++ P+ + + IL++
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + GK+ +A+++ + + P TY VI G K G A+ +
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M P+ + + L+ GL
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGL 494
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R GK +A ++ E + PD TY +I G+ K G +A+++
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ M SPD + + +L+ L L+
Sbjct: 195 LDRMSVSPDV---VTYNTILRSLCDSGKLK 221
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++RK + P + LI L R G + A+ + E M + P+S +Y ++ GF K
Sbjct: 334 DMLRK--GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A+ E M+ P+ + + +L L
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ RTG++ E + E+M PD T +IRGF + G A I E + S P+
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 212 ELPFRILLKG 221
+ + +++ G
Sbjct: 172 VITYNVMISG 181
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QP+ + ++ ++ TG+ +A ++ M ++ P T+ +I + G
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A++I E M + P L + LL G
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFC 390
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ YIY I+ L R KM EA +++E M+K + P+ TY+ +I G+ K G+ A
Sbjct: 231 KPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYG 290
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y++++ + P + F L+ G
Sbjct: 291 LYKEILVAELLPNVVVFGTLVDGFC 315
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI L ++ EA ++++ M+ E +FP S TY +I G+ K+ + A++
Sbjct: 371 SPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALD 430
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ +M S P + F L+ G
Sbjct: 431 LCSEMTASGVEPNIITFSTLIDG 453
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + M EA++++ M + + P+ T+ ++ GF K+G + A++
Sbjct: 477 PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
Y++ + + F L++GL +
Sbjct: 537 YQENNQQRSCWNHVGFTCLIEGLCQN 562
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y+Y LI ++G M EA+ + M +L PD TYT +I G + A+A +
Sbjct: 337 PNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRL 396
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P + L+ G
Sbjct: 397 FQKMKNERIFPSSATYNSLIHG 418
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
+++L R + A K+F++++K P+ Y Y +I +TG + +A +++ + +
Sbjct: 241 ILDLCRDNKMEEAEKMFELMKKHGVL-PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAE 299
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P+ + ++ GF K A +++ M+K P + L+ G
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI + AM ++ M + + PD TYT +I K+ + +A+
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+Y DM+++ P + F L+ G
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDG 523
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ LI L + G + A + + MR + PD +Y +++G L++ D M + DMI
Sbjct: 552 FTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMI 611
Query: 205 KSPDPPEELPFRILLK 220
K+ P L ++L +
Sbjct: 612 KTGILPNLLVNQLLAR 627
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + QD + PD Y + L+ L + G + A+++ + M +E PD TY VI
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A+ + + MI P + + L+ L
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I D++ Q+ Y PD Y Y +I L + G++ EA++V + M D P++ TY +I
Sbjct: 314 AIEIMDVML-QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ +A + + P+ F L++GL
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ + +PD Y LI L + G++ A ++ S++ + + Y VI
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
+G + +A+N++ +M++ + PP+ + +RI+ +GL
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI AL R ++ A+ + E M L PD +T+T V++G++++G A+
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK-----KDFEELFPEKHAYD 247
I E M++ + +++ G + + + + FP+++ ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++F+ +R + +PD + Y LI +L GK++EA+ + + M TY +
Sbjct: 418 VAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF--- 240
I GF K +A I+++M + + L+ G L +S+ +D +L
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDG-----LCKSRRVEDAAQLMDQM 531
Query: 241 ------PEKHAYD 247
P+K+ Y+
Sbjct: 532 IMEGQKPDKYTYN 544
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ Y LI L ++ ++ +A Q+ + M E PD TY ++ F + G A +I
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 201 EDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M + P+ + + L+ GL + LLRS K L P HAY+P
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI-NLTP--HAYNP 615
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L T AM+++E MR + PD TY +I G +A+N+
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ M S + + L+ G ++ ++ EE+F E +
Sbjct: 458 LKQMELSGCARSVITYNTLIDG-----FCKANKTREAEEIFDEMEVH 499
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPA-DAMNIY 200
+ Y +I L R K EA+ ++ M +++ P D+ +Y V RG G P +A++
Sbjct: 611 HAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFL 670
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++++ PE +L +GLL + + VK
Sbjct: 671 VELLEKGFVPEFSSLYMLAEGLLTLSMEETLVK 703
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 57.4 bits (137), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 125 AVKIFDIIR--------KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
AVK+ D+ + K D P +IY LI L + +MN+A Q+++ M L P
Sbjct: 189 AVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPS 248
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K G+P + + E M P + F LLKGL
Sbjct: 249 LITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Score = 40.0 bits (92), Expect = 0.015, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L+ TGK++EA + + ++ L PD TY +I G+ G+ + +YE+M
Sbjct: 567 YNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK 626
Query: 205 KSPDPPEELPFRILL 219
+S P + +L+
Sbjct: 627 RSGIKPTLKTYHLLI 641
Score = 38.5 bits (88), Expect = 0.043, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y ++ A G M +A + + M ++ + D TY +I G LK G + +
Sbjct: 662 KPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRS 721
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++M PE + I++KG
Sbjct: 722 LIDEMNAREMEPEADTYNIIVKG 744
Score = 37.4 bits (85), Expect = 0.094, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + ++ + + +F I + D ++P ++Y I A + + + ++++ M+ +
Sbjct: 150 LLDHLVKTKQFRVTINVFLNILESD-FRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHD 208
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++P Y +I G K DA ++++M+ P + + L+ G
Sbjct: 209 RIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDG 258
Score = 34.7 bits (78), Expect = 0.71, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D +P + L+ L + G + +A V + M+ PD+ T++ + G+ +
Sbjct: 276 KADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ +YE + S ILL L
Sbjct: 336 EAALGVYETAVDSGVKMNAYTCSILLNAL 364
Score = 34.3 bits (77), Expect = 0.91, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+AY L+ AL + GK+ +A ++ + L P+ Y +I G+ + G A
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412
Query: 201 EDMIKSPDPPEELPFRILLK 220
E M K P+ L + L++
Sbjct: 413 EAMEKQGMKPDHLAYNCLIR 432
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ IY +I R G + A E+M K+ + PD Y +IR F + G +A
Sbjct: 387 PNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKE 446
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M P + IL+ G
Sbjct: 447 VNKMKLKGVSPSVETYNILIGG 468
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 86 FKDDEEKLQKFIKTHVLRLLKM-DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYI 144
F+ +E L+K I+ +++ + D +++ +L E+ +L +I RK +PD +
Sbjct: 549 FRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLL-----EISRKG--LKPDVFT 601
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
Y LI G + + ++E M++ + P +TY +I K+G
Sbjct: 602 YNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG 648
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 57.4 bits (137), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 750 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 809
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 810 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 845
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 535
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 536 ANAFAVFEDMVKEGMKPD 553
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 538 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G ++ +++ M + P F L+ GL+
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 728 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 787
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + L+KG
Sbjct: 788 EEMEALGVKPNIKTYTTLIKG 808
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + IY LI A A M+EA+ M++E + TY+ ++ GF K G A+A +
Sbjct: 342 PTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGH-AEAADY 400
Query: 200 YEDMIK 205
+ D K
Sbjct: 401 WFDEAK 406
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y LI L++ G++ EA ++M PD+ TYT ++ G + G
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ E+M P + + LL GL L+
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++Y ++ K +EA+ V++ M++E + PD TY +I G K G +A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEAR 320
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P+ + L+ G+
Sbjct: 321 MYLKTMVDAGYEPDTATYTSLMNGMC 346
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y L+ + R G+ A+ + E M P+ TY ++ G K M
Sbjct: 331 YEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGM 390
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M S E + L++ L+
Sbjct: 391 ELYEMMKSSGVKLESNGYATLVRSLV 416
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 95 KFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154
F+ H+ + + +V ++ R + FD+ +PD + LI +
Sbjct: 198 NFLLKHLCKCKDLHVVYEFVDEMRDD--------FDV-------KPDLVSFTILIDNVCN 242
Query: 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP 214
+ + EAM + + PD Y +++GF ++A+ +Y+ M + P+++
Sbjct: 243 SKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQIT 302
Query: 215 FRILLKGL 222
+ L+ GL
Sbjct: 303 YNTLIFGL 310
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALART--GKMNEAMQVWESMRKEDLFPDSQTYT 181
VK+F I++ Q ++P + L+ R ++ +V M L PD T
Sbjct: 104 TVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTD 163
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+R + G +A ++ +++ + PP+ + LLK L
Sbjct: 164 IAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLC 205
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD +R D + P Y LI L +G + A ++ E M + +FPD TYT ++
Sbjct: 393 ASLLFDDLRAGDIH-PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLV 451
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+GF+K+G+ + A +Y++M++ P+ +
Sbjct: 452 KGFVKNGNLSMATEVYDEMLRKGIKPDGYAY 482
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + + D + PD IY I L + G + +A++ + + L PD TYT VI
Sbjct: 498 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 557
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RG+L++G A N+Y++M++ P + + +L+ G
Sbjct: 558 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYG 594
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + GK EA +++ +R D+ P TY +I G + G+ A +
Sbjct: 372 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 431
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + L+KG + + L S + ++E+ P+ +AY
Sbjct: 432 KEEMTTQLIFPDVITYTTLVKGFVKNGNL-SMATEVYDEMLRKGIKPDGYAY 482
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G ++ A +V++ M ++ + PD YT G L+ G A +
Sbjct: 442 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRL 501
Query: 200 YEDMIKSP-DPPEELPFRILLKGLL 223
+E+M+ + P+ + + + GL
Sbjct: 502 HEEMVATDHHAPDLTIYNVRIDGLC 526
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI ++ GKM EA + MR+ ++ +I G+ K G DA + ++M+
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 205 KSPDPPEELPFRILLKGLL 223
+ P + I + L
Sbjct: 336 NAGIYPTTSTYNIYICALC 354
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I G+ A +++ M ++ L+P TY +I G K G A
Sbjct: 548 PDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQY 607
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL----RSKVKKDFEELFPEKHAY 246
+M K P + LL G+ + R K + E + P K++Y
Sbjct: 608 STEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSY 658
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + ++ + + G + ++W M++ ++ TY +I GF K+G +A
Sbjct: 236 PTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRF 295
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ DM +S F L++G L
Sbjct: 296 HGDMRRSGFAVTPYSFNPLIEGYCKQGLF 324
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVIL--GLKRFKDDEEKLQKFIKTHVLRLLKMD 108
L L Y D + G L+ + F+IL GL + EE L+ ++ L K D
Sbjct: 246 LALAVYEDFKEDG-------LVEESTTFMILVKGLCKAGRIEEMLE-ILQRMRENLCKPD 297
Query: 109 I---VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
+ A++ L + +++++D +R+ D +PD Y L++ L + G++ +++
Sbjct: 298 VFAYTAMIKTLVSEGNLDASLRVWDEMRR-DEIKPDVMAYGTLVVGLCKDGRVERGYELF 356
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP- 224
M+ + + D + Y +I GF+ DG A N++ED++ S + + ++KGL
Sbjct: 357 MEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSV 416
Query: 225 ----------HPLLRSKVKKDFEELFPEKHAY 246
+ +++ DFE L P AY
Sbjct: 417 NQVDKAYKLFQVAIEEELEPDFETLSPIMVAY 448
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+E+ +A+ +F I++ + +Y L+ AL + G + +++ ++ MRK PDS
Sbjct: 486 EEKNAMALDVFYILKTKG--HGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSS 543
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ I F++ G A + +E +I+ P + L KGL
Sbjct: 544 SYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLC 588
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 53/100 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ ++P ++Y ++ AL + G + A+ V+E +++ L +S T+ +++G K G
Sbjct: 220 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 279
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ + I + M ++ P+ + ++K L+ L + ++
Sbjct: 280 EEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLR 319
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 37/157 (23%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LR + IVA +++L + +A K F KQ Y+ D Y L R G A
Sbjct: 120 LRRVTPSIVAEVLKL--GNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAA 177
Query: 162 MQ-----------------------------------VWESMRKEDLFPDSQTYTEVIRG 186
Q V+E M+K P Y ++
Sbjct: 178 DQLPELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDA 237
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+K+G A+ +YED + E F IL+KGL
Sbjct: 238 LVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLC 274
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD K P Y LI + G++ EA ++W+ M + P++ TY +I
Sbjct: 385 ARKLFDEFEKGSI--PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLI 442
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL------------LPHPLLRSKV 232
G K+G+ + + + E+M++ P + F IL +GL + ++ KV
Sbjct: 443 EGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV 502
Query: 233 KKDFEELFPEKHA 245
K+ ELF +K A
Sbjct: 503 DKESWELFLKKFA 515
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ G M A +V E M +PD+ TYT ++ G+ K G ++A +
Sbjct: 224 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+DM K+ P E+ + ++++ L
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALC 307
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +++++ A +FD + ++ + PD+ + +I AL K++EA +W M K + P
Sbjct: 306 LCKEKKSGEARNMFDEMLERS-FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP 364
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D+ + +I K+G +A ++++ K P L + L+ G+
Sbjct: 365 DNALLSTLIHWLCKEGRVTEARKLFDEFEKG-SIPSLLTYNTLIAGMC 411
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + D + K + +P+ Y +I AL + K EA +++ M + PDS +VI
Sbjct: 280 AATVMDDMEKNE-IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVI 338
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+D +A ++ M+K+ P+ L+ L + ++ +K F+E
Sbjct: 339 DALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRV-TEARKLFDEF 392
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VLI+ +R + L +F ++ P+ + L+ AL + + A +V + +
Sbjct: 161 LLNVLIQNQRFD---LVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI 217
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P+ TYT ++ G++ G A + E+M+ P+ + +L+ G
Sbjct: 218 PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDG 270
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ ++ + + A K++D + K PD Y LI + ++ E M+V+ M +
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
L ++ TYT +I GF + +A +++ M+ P+ + + ILL GL +
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNN 439
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ K + +PD + Y LI L G+ ++A ++ M ++++ PD + +I
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDA 329
Query: 187 FLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPH 225
F+K+G +A +Y++M+KS P+ + + L+KG +
Sbjct: 330 FVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKY 369
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQPD + L+ L + K +EA+ + E M + PD TY VI G K G P A+
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
N+ M K + + + ++ GL +
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKY 263
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L G + A+ V+E M+K D+ D TYT +I K G
Sbjct: 419 SDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D +++ + P + + ++ G R +K++ + LF E
Sbjct: 479 DGWDLFCSLSLKGVKPNVVTYTTMMSG-----FCRKGLKEEADALFVE 521
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AV+ L ++ E LA+ + + + K + D IY +I L + M++A ++ M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGK-IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ + PD TY +I G +DA + DM++ P+ + F L+ + L
Sbjct: 279 KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL-V 337
Query: 231 KVKKDFEELFPEKHAY 246
+ +K ++E+ KH +
Sbjct: 338 EAEKLYDEMVKSKHCF 353
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K+D + D Y +I AL + GK+ + ++ S+ + + P+ TYT ++
Sbjct: 445 ALVVFEYMQKRDM-KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P + L++ L
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARL 542
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y ++ R G EA ++ M+++ P+S TY +IR L+DG A +
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
+ ++M + F GL+ + L ++ K F ++
Sbjct: 553 LIKEMRSCGFAGDASTF-----GLVTNMLHDGRLDKSFLDMLS 590
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + LA+ I + K Y P L+ +++EA+ + + M + PD+
Sbjct: 122 RRSQLSLALAILGKMMKL-GYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+T ++ G + ++A+ + E M+ P+ + + ++ GL
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 226
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ ++PD Y L+ + R G++ EA +++ M + + PD TYT +I+G KDG
Sbjct: 263 EEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRV 322
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+A + M+ P+ + + L+ +++ K
Sbjct: 323 REAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKK 362
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA Q + M + PD +Y +I + K+G + +
Sbjct: 304 PDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL 363
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+M+ + P+ +++++G + L S V
Sbjct: 364 LHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVN 397
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI A + G M ++ ++ M + PD T ++ GF+++G A+N
Sbjct: 338 KPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVN 397
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y + L E E M +E PD TY ++ + + G +A
Sbjct: 233 HPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFY 292
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ M + P+ + + L+KGL
Sbjct: 293 LYKIMYRRRVVPDLVTYTSLIKGLC 317
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 102 LRLLKMDI---VA--VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156
LR LK+DI V +++ L ++ + A + D I +++ ++ Y +LI +L+R
Sbjct: 402 LRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCD 461
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
+ EA+ + ++ ++ D++TY +I + G +A ++ +M S P+
Sbjct: 462 AIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICG 521
Query: 217 ILLKG 221
L+ G
Sbjct: 522 ALVYG 526
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + + PD Y LI + K+++AM+++ M ++ L ++ TYT +I
Sbjct: 301 ARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLI 359
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+GF + G P A ++ M+ PP + +LL L + KVKK
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN----GKVKK 405
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI G ++EA Q++ M + FPD YT +I GF K DAM I
Sbjct: 280 PNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M + + + L++G
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGF 362
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++ L + A+ +FD + +PD +Y L+ L +G+ +A + M
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYG-IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMT 239
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K + PD T+ +I F+K+G DA +Y +MI+ P + L+ G
Sbjct: 240 KRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 125 AVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A+ IF+ ++K+ D P+ + Y L+ L GK+ +A+ V+E MRK ++ TYT
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKD 235
+I+G K G +A+N++ + P + + ++ GL H L R K+K+D
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFR-KMKED 524
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD + LI +M EAM + M + + PD YT +I K+G A+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKK 234
++++ M P+ + + L+ GL LLR K+
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKR 241
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF + Q + Y LI + GK N A +V+ M + P+ +TY ++
Sbjct: 336 AMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394
Query: 185 RGFLKDGSPADAMNIYEDMIK---SPDPPEELPFRILLKGLL 223
+G A+ I+EDM K P + +LL GL
Sbjct: 395 HCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLC 436
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL---FPDSQTYTEVIRGFLKDGSPADA 196
P+ Y L+ L GK+ +A+ ++E M+K ++ P+ TY ++ G +G A
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444
Query: 197 MNIYEDMIK 205
+ ++EDM K
Sbjct: 445 LMVFEDMRK 453
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + K+ + DA Y LI L+ +G+ +A ++ M K + P+ +T +I
Sbjct: 203 ALEVFYCMEKKGI-RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 261
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
F+K+G+ +A N+Y++MI+ P + L+ G H L
Sbjct: 262 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCL 305
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ + + PD Y LI ++ ++ + M+++ M + L D+ TY +I G+
Sbjct: 311 MFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ G A ++ M+ P+ + + ILL L +
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ IY +I L + +N A++V+ M K+ + D+ TY +I G G DA
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
+ DM+K P + F L+
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI 261
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G + EA +++ M + + P+ TY +I GF G DA +
Sbjct: 252 PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 311
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + + L+ G +SK +D +LF E
Sbjct: 312 FDLMVSKGCFPDVVTYNTLITG-----FCKSKRVEDGMKLFCE 349
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y LI + GK+N A +V+ M + PD TY ++ +G A+ +
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 417
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
ED+ KS + + + I+++GL
Sbjct: 418 EDLQKSEMDVDIITYNIIIQGLC 440
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI G + +A +++ M + FPD TY +I GF K D M +
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + L+ G
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHG 368
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A K+F+ R D PD Y L+ L GK+ +A+ + E ++K ++ D TY
Sbjct: 377 VAQKVFN--RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 434
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE-- 238
+I+G + +A ++ + + P+ + + ++ GL L R K+ + +E
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Query: 239 LFPEKHAYD 247
P + YD
Sbjct: 495 FMPSERIYD 503
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++++++ + Y PD + Y LI L G ++EA Q++ M + +P+ YT +I
Sbjct: 277 AKELYNVMIQMSVY-PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K D M I+ +M + + + +L++G
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQG 372
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + Y P+ IY LI ++ ++ + M+++ M ++ + ++ TYT +I
Sbjct: 312 ARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G+ G P A ++ M PP+ + +LL GL +
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCN 411
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L GK+ +A+ ++E MRK ++ + TYT +I+G K G DA ++
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR---SKVKKDFEELF-PEKHAY 246
+ + P + + ++ G L+ S KK E+ F P + Y
Sbjct: 456 FCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + + +P+ Y L+ L G+ +A + M K + P+ T+T +I
Sbjct: 207 AVELFNQM-GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
F+K G +A +Y MI+ P+ + L+ GL + LL + ++ F + E++
Sbjct: 266 DAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL-DEARQMFYLM--ERN 322
Query: 245 AYDPPEEIFGKL 256
P E I+ L
Sbjct: 323 GCYPNEVIYTTL 334
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD I ++P+ Y LI L + +N A++++ M P+ TY ++
Sbjct: 172 AIALFDQILGMG-FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G DA + DM+K P + F L+ +
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFV 269
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI A + GK+ EA +++ M + ++PD TY +I G G +A
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M ++ P E+ + L+ H +SK +D ++F E
Sbjct: 315 MFYLMERNGCYPNEVIYTTLI-----HGFCKSKRVEDGMKIFYE 353
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +RK++ + Y +I + + GK+ +A ++ S+ + + P+ TYT +I
Sbjct: 417 ALMIFEYMRKREM-DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMI 475
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
GF + G +A ++++ M + P E ++
Sbjct: 476 SGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
Q + Y LI G+ + A +V+ M PD +TY ++ G +G
Sbjct: 355 SQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKV 414
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ I+E M K + + I+++G+
Sbjct: 415 EKALMIFEYMRKREMDINIVTYTIIIQGMC 444
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 67 RGKKLIGKEALFVIL---GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
+ K+ ++A+ +IL K + ++ +K + VL L I A+ E
Sbjct: 80 KNTKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES------- 132
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++F+++R+Q WY+P+ IY LI+ L + + +A ++++ M E + + YT +
Sbjct: 133 -AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTAL 191
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + + G A + E M S + P+ + IL+K L
Sbjct: 192 VSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PD Y ++ R+ ++EA++V M ++ + PD+ TY+ +I+GF +
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A ++YE+M++ PP+E + L+
Sbjct: 502 KEACDLYEEMLRVGLPPDEFTYTALINA 529
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + P Y LI TGKM +A+ V E M+++ L PD +Y+ V+ GF + +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDE 468
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELF 240
A+ + +M++ P+ + + L++G R+K D +EE+
Sbjct: 469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQR--RTKEACDLYEEML 512
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI ++ + G MN AM+ + MR L P+ +TYT ++ GF + G +A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + P + + L+ G
Sbjct: 403 LREMNDNGFSPSVVTYNALING 424
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + EA ++E M + L PD TYT +I + +G A+
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +M++ P+ + + +L+ GL
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGL 565
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ ++ G MNEA +V M P TY +I G G DA+ +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
EDM + P+ + + +L G
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFC 461
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L R G+M E V M + D TY +I+G+ K+G+ A+
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M++ P + + L+ +
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMC 356
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
LI G M EA QV+ESM ++ PD Y +I G + G A +Y++M+KS
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y D Y LI + G ++A+ + M + L P TYT +I K G+ AM
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ M P E + L+ G
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDG 389
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A G + +A+Q+ M ++ + PD TY+ +I G K +A +
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ P ++ + L++
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENC 600
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY---------------TEVI 184
PD Y LI L + + EA ++ + E+ P TY +I
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+GF G +A ++E M+ P+ + I++ G
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHG 649
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+E+ A++++D ++K P + LI L GK AM+ ++ + + L PD
Sbjct: 498 REEKVEKALEMWDEMKKVK-ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+ +I G+ K+G A Y + IK P+ ILL GL
Sbjct: 557 STFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLC 602
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ A+++ G++++ ++ M+K L P+ TY ++ G+ K GS +A
Sbjct: 237 NPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQ 296
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
I E M ++ P+ + IL+ GL +R
Sbjct: 297 IVELMKQTNVLPDLCTYNILINGLCNAGSMR 327
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ P+ Y +L+ + G + EA Q+ E M++ ++ PD TY +I G GS
Sbjct: 267 KKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSM 326
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + + + M P+ + + L+ G
Sbjct: 327 REGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI+ R K+ +A+++W+ M+K + P T+ +I G G AM +
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDP 248
+++ +S P++ F ++ G +V+K F E + E KH++ P
Sbjct: 545 DELAESGLLPDDSTFNSIILGYCK----EGRVEKAF-EFYNESIKHSFKP 589
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +I +++ KQ PD Y LI L G M E +++ ++M+ L PD TY +I
Sbjct: 294 AFQIVELM-KQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI 352
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G + G +A + E M ++ I LK L R V + +EL + H
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEE-KREAVTRKVKELV-DMH 410
Query: 245 AYDP 248
+ P
Sbjct: 411 GFSP 414
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +T LA++ FD + + PD + +I+ + G++ +A + + K P
Sbjct: 531 LCHHGKTELAMEKFDELAESGLL-PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKP 589
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
D+ T ++ G K+G A+N + +I+
Sbjct: 590 DNYTCNILLNGLCKEGMTEKALNFFNTLIE 619
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 124 LAVKIFD-IIRKQDWYQPDAYIYKDLIIALAR---TGKMNEAMQVWESMRKEDLFPDSQT 179
+A++IF +IR + +P+ L+I L R + ++ A +V++ M K + + QT
Sbjct: 149 VALQIFQKMIRLK--LKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQT 206
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKS-PDPPEELPFRILLKGL 222
+ ++ G+ +G DA+ + E M+ P+ + + +LK +
Sbjct: 207 FNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAM 250
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y L+ L + G +A+ + ++ +E D+ TY +I F KD +A
Sbjct: 587 FKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAY 645
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + P+ + + L+
Sbjct: 646 DLLSEMEEKGLEPDRFTYNSFISLLM 671
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
D Y +I A + K+ EA + M ++ L PD TY I ++DG
Sbjct: 624 DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDG 674
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLF----PDSQTYTEVIRGFLKDGSPADAMNIYE 201
K L+++ RT + ++ + S+ +L P + + +L +G P A+ I++
Sbjct: 98 KSLLVSYIRTS--DASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQ 155
Query: 202 DMIKSPDPPEELPFRILLKGLLPHP 226
MI+ P L LL GL+ +P
Sbjct: 156 KMIRLKLKPNLLTCNTLLIGLVRYP 180
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TY +I
Sbjct: 379 AKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I++ M+ PP+ + + ILL GL +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A ++ M + + P+ T++ +I F+K+G +A
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y+ + F
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Query: 254 GK 255
K
Sbjct: 406 CK 407
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y LI +++EA ++E M +D FP+ TY +I
Sbjct: 344 AEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K + M ++ +M + + + L++GL
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKG-----FCKAKRVEEGMELFRE 420
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A KIF + D PD Y L+ L + GK+ +A+ V+E ++K + PD TY +
Sbjct: 448 MAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I G K G D +++ + P + + ++ G R +K++ + LF E
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG-----FCRKGLKEEADALFRE 560
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I AL +N+A+ ++ M + + P+ TY +IR G +DA
Sbjct: 252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 358
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I R G EA ++ M+++ P+S TY +IR L+DG A +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591
Query: 199 IYEDM 203
+ ++M
Sbjct: 592 LIKEM 596
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K +PD Y Y +I + + GK+ + ++ S+ + + P+ YT +I
Sbjct: 484 ALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P + L++ L
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y ++ L + G ++ A+ + + M K + D YT +I + DA+N
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M P + + L++ L +
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNY 303
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + PD TY+ ++ G K G A+ ++
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + KS P+ + I+++G+
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMC 511
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 113 LIELERQEETILAVKIFDII-----RKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++E + I + FD++ R Q+ D Y Y LI R ++ A+ V
Sbjct: 80 IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M K PD T + ++ G+ ++A+ + + M P + F L+ GL H
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQP+ + LI L K +EA+ + + M PD TY V+ G K G A+
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ + M K + + + ++ L + K D LF E
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNY-----KNVNDALNLFTE 280
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD++ + +PD Y LI + + ++++ M+++ + + L P++ TY ++
Sbjct: 369 ANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
GF + G A ++++M+ PP + + ILL GL + L +K + FE++
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL-NKALEIFEKM 481
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI L GK ++ ++ M ++ PD T++ +I F+K+G +A
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 336
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+Y +MI P+ + + L+ G L
Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI + GK+ EA +++ M + PD+ TY +I GF K+ +A +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + + IL+ + ++K D LF E
Sbjct: 373 FDLMVSKGCEPDIVTYSILI-----NSYCKAKRVDDGMRLFRE 410
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY +I + K+++A ++ S+ + + PD TY +I G K GS ++A ++ M
Sbjct: 492 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ P++ + IL++ L L S V+
Sbjct: 552 KEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + ++EA Q+++ M + PD TY+ +I + K D M +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ ++ P + + L+ G L + +ELF E + P +
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAA-----KELFQEMVSRGVPPSV 455
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMR 169
VL L + + LA+ +F RK + A + Y +I +L + G ++A+ ++ M
Sbjct: 216 VLNRLCKSGNSALALDLF---RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + D TY+ +I G DG D + +MI P+ + F L+
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD Y ++ L ++G A+ ++ M + ++ Y+ VI KDGS DA+
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ +M + + + L+ GL
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLC 291
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L G++N+A++++E M+K + Y +I G DA ++
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + P+ + + +++ GL
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLC 536
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I L + G ++EA ++ M+++ PD TY +IR L ++
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Query: 199 IYEDM 203
+ E+M
Sbjct: 582 LIEEM 586
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + L+ G+++EA+ + + M + PD T + +I G G ++A+
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 198 NIYEDMIKSPDPPEELPF 215
+ + M++ P+E+ +
Sbjct: 196 VLIDRMVEYGFQPDEVTY 213
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD LI L G+++EA+ + + M + PD TY V+ K G+ A A++
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M + + + I++ L
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLC 256
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 114 IELERQEETILAVKIFDII------RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I+ R + K +D++ + + + D Y +I R K+ A V
Sbjct: 71 IDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGR 130
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K PD+ T++ ++ GF +G ++A+ + + M++ P+ + L+ GL
Sbjct: 131 AWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLC 186
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 112 VLIE-LERQEETILA-VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLI+ L R + T+ A +KIF + K+ PD+Y Y LI L R G+++EA +++ M
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPKRGC-DPDSYTYGTLISGLCRFGRIDEAKKLFTEMV 219
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++D P TYT +I G + +AM E+M P + L+ GL
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L R +E A K+F + ++D P Y LI L + ++EAM+ E M
Sbjct: 198 LISGLCRFGRIDE---AKKLFTEMVEKDC-APTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + + P+ TY+ ++ G KDG AM ++E M+ P + + L+ GL +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 229 RSKV----KKDFEELFPEKHAY 246
+ V + + + L P+ Y
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLY 335
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ++ A+++F+++ + +P+ Y LI L + K+ EA+++ + M + L P
Sbjct: 272 LCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKP 330
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
D+ Y +VI GF +A N ++MI P L + I +K
Sbjct: 331 DAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVK 375
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +P+ + Y L+ L + G+ +AM+++E M P+ TYT +I G K+
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+A+ EL R+ L+GL P L KV F + + A + +E+
Sbjct: 314 QEAV--------------ELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 141 DAYIYKDLIIALART-GKMN---EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ + +D+++++ R G+++ ++++V+ M+ D P + Y V+ +++ A
Sbjct: 81 NCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLA 140
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
Y++M + PP +L+K L + K F E+ K DP +G L
Sbjct: 141 FKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEM--PKRGCDPDSYTYGTL 198
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 87 KDDEEKLQKFIKTHVL-RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
K+ E+ L K IK VL L ++ + L ++ E AV++ + +Q +PD Y
Sbjct: 233 KECEKLLDKVIKRGVLPNLFTYNLF--IQGLCQRGELDGAVRMVGCLIEQGP-KPDVITY 289
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+LI L + K EA M E L PDS TY +I G+ K G A I D +
Sbjct: 290 NNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVF 349
Query: 206 SPDPPEELPFRILLKGLL 223
+ P++ +R L+ GL
Sbjct: 350 NGFVPDQFTYRSLIDGLC 367
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ET A+ +F+ + +P+ +Y LI L+ G + EA Q+ M ++ L P
Sbjct: 366 LCHEGETNRALALFNEALGKGI-KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ QT+ ++ G K G +DA + + MI P+ F IL+ G
Sbjct: 425 EVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + + LI + KM A+++ + M + PD TY ++ G K D M
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
Y+ M++ P F ILL+ L +
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRY 544
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I D++ + PD Y Y L+ L +T K + M+ +++M ++ P+ T+ ++
Sbjct: 480 ALEILDVML-DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +A+ + E+M P+ + F L+ G +
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + L+ +L R K++EA+ + E M+ + + PD+ T+ +I GF K+G A +
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----LFPEKHAY 246
+ M ++ P ++ L + +K F+E L P+ + Y
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ +PD+Y Y LI + G + A ++ PD TY +I G +G
Sbjct: 314 NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN 373
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL--RSKVKKDFEE--LFPEKHAYD 247
A+ ++ + + P + + L+KGL ++ +++ + E L PE ++
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ L+ L + G + E ++ + + K + P+ TY I+G + G A+ + +I
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLI 278
Query: 205 KSPDPPEELPFRILLKGLLPHP 226
+ P+ + + L+ GL +
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNS 300
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI L G+ ++A ++ M + + P+ T++ +I F+K+G +A
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y + F
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Query: 254 GK 255
K
Sbjct: 409 CK 410
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TYT +I
Sbjct: 382 AKHMFELMISKDCF-PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
GF + +A +++ M+ P L + ILL GL +
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ ++ + + A K++D + K+ PD + Y LI +++EA ++E M
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+D FP+ TY+ +I+GF K + M ++ +M + + + L+ G
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFF 444
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 325 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 384
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 385 MFELMISKDCFPNVVTYSTLIKG-----FCKAKRVEEGMELFRE 423
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ L + GK+ +AM V+E +++ + PD TY +I G K G D
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ ++ P + + ++ G
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFC 549
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I L + M++A+ ++ M + + PD TY+ +I G +DA
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 361
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y I R +++ A+ V M K PD T + ++ G+ +DA+ +
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
+ M++ P+ F L+ GL H
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLH 201
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ +PD Y Y +I + + GK+ + +++ ++ + + P+ Y +I
Sbjct: 487 AMVVFEYLQRSTM-EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + GS +A ++ + M + P + L++ L
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + + LI L K +EA+ + + M + PD TY V+ G K G A+
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
++ + M K + + + ++ GL +
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKY 271
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q QPD Y ++ L + G ++ A+ + + M K + D Y +I G K
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
DA+N++ +M P+ + L+ L +
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNY 306
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + LA+ + + K Y+PD L+ + ++++A+ + + M + PD+
Sbjct: 130 RRSQLSLALAVLAKMMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+T +I G ++A+ + + M++ P+ + + ++ GL
Sbjct: 189 FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
P+ Y +I R G EA + + M+++ P+S TY +IR L+DG
Sbjct: 535 SPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDG 587
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 54.3 bits (129), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD++ K+ P++ Y LI L G++ EA + + M ++ P ++TYT +I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ G A N++++MI P + +L+ GL
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGL 346
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y LI L R GK+ EA V M K+ +FP TY +I G+ KDG A
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M K P F L++GL
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGL 416
Score = 44.3 bits (103), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI AL G +++A +++ M P+ TYT +I G +DG +A
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG 357
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-FPEKHAYDPPEEIFGKL 256
+ M+K P + + L+ G +V FE L EK A P F +L
Sbjct: 358 VCRKMVKDRIFPSVITYNALINGYCKD----GRVVPAFELLTVMEKRACKPNVRTFNEL 412
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R G MN A ++ SM D+ PD T+T +I F K G A
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAF 498
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
M++ +E+ L+ G+ KV K + LF
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGV-------CKVGKTRDALF 532
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I L + G++ EA ++ +M+ + P+ TYT +++G++ +G A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M++ + + LL+G +
Sbjct: 674 VRAMVERGYELNDRIYSSLLQGFV 697
Score = 39.3 bits (90), Expect = 0.026, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L R+G + + ++ E M+ P+ YT +I G + G +A +
Sbjct: 579 PSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKL 638
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M S P + + +++KG
Sbjct: 639 LSAMQDSGVSPNHVTYTVMVKG 660
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + +L+ L R GK +A+ + + M L PD +Y +I G ++G A
Sbjct: 403 KPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYK 462
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M P+ L F ++
Sbjct: 463 LLSSMNCFDIEPDCLTFTAIINAF 486
Score = 31.6 bits (70), Expect = 6.2, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y+ ++ AL + G A + K DS T ++ GF + + DA+ +++ M
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMS 257
Query: 205 KSPD-PPEELPFRILLKGL 222
K P + + IL+ GL
Sbjct: 258 KEVTCAPNSVSYSILIHGL 276
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G++ EA ++ + K + P TY+ +I GF K G+ +
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
YEDMIK PP+ + + +L+ GL L+
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ K+F+ ++++ P Y +I L + G+++EA ++ L PD Y +I
Sbjct: 725 SFKLFEEMQEKG-ISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
RG+ K G +A +YE M+++ P++L R L
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ I ++G + A V++ M + + P+ TYT +I+G +DG +A +Y
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++K P + + L+ G LRS +E++ K Y P I+G L
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL-YEDMI--KMGYPPDVVIYGVL 467
Score = 38.1 bits (87), Expect = 0.058, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
++ LI R + +EA++V+ M + PD T+T V+R + +G +A+ ++ M
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM 557
Query: 204 IKSPDPPEELPFRILLKGLLPH 225
K P+ L + L+ H
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKH 579
Score = 35.4 bits (80), Expect = 0.38, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ FD+ + +Q +PD Y LI + G + +++ + + D ++ I
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++K G A A +Y+ M+ P + + IL+KGL
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGL 401
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
P+ + LI + G+M+ A +++ M + + PD Y+ +I G+ K G
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAG 335
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + K + QP IY L+ + GK+ +A+ ++E M++ P TYTE+I
Sbjct: 252 AIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
+G K G +A Y+DM++ P+
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPD 337
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++ Q PD Y Y L+ + + G +NEA + M + D ++ ++
Sbjct: 498 AVDLFNEMKNQG-SGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++E + S P+ + + LL G H + + + E+ +
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEEAARMMREMKDKGF 615
Query: 245 AYDP 248
YD
Sbjct: 616 EYDA 619
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V +++ E Q E + V ++ + D + PD Y LI + + G+ + A+++++ M+
Sbjct: 203 VILMLMQEGQHEKVHEVYT-EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMK 260
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + YT ++ + K G A++++E+M ++ P + L+KGL
Sbjct: 261 DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P + Y +I+ L + G+ + +V+ M E D FPD+ TY+ +I + K G A+
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++++M + P E + LL
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLL 275
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ P Y Y +LI L + G+++EA ++ M ++ L PD ++
Sbjct: 287 ALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLM 345
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G + N++ +M P + + ++K L S+V F+++
Sbjct: 346 NILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+++ + +Y +I + GK++EA+ ++ M+ + PD Y ++ G +K G
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KHAYDPPEEI 252
+A ++ M ++ + I+L G R+ V + E+F KH+ P+ +
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNG-----FARTGVPRRAIEMFETIKHSGIKPDGV 585
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF + ++ +PD Y + LI L ++ A+ + M E + ++ TY +I
Sbjct: 478 AVEIFREMPRKGC-KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
FL+ G +A + +M+ P +E+ + L+KGL + K + FE++ + H
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEV-DKARSLFEKMLRDGH 595
Query: 245 A 245
A
Sbjct: 596 A 596
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ IY+ LI +L++ ++NEA+Q+ E M PD++T+ +VI G K +A +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M+ P+++ + L+ GL
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLC 333
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+++ +R + +P+ Y Y L+ + GK++EA V M + L P++ + +
Sbjct: 407 LALEVLHDMRNKGC-KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL 465
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I F K+ +A+ I+ +M + P+ F L+ GL
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC 505
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G + A++V MR + P+ +YT ++ GF K G +A N+
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M P + F L+
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFC 470
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L R G++ + + ++ ++ E + PD+ T+ ++ K G DA +
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLL 691
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ I+ P + ILL+ ++P L
Sbjct: 692 LDEGIEDGFVPNHRTWSILLQSIIPQETL 720
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ Y LI A R G++ EA ++ M + D TY +I+G + G A ++
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+E M++ P + IL+ GL ++ V+
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA + D+I+ L + ++NEA ++ M PD TY ++ G K G A ++
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + K PE + F L+ G + H L
Sbjct: 345 FYRIPK----PEIVIFNTLIHGFVTHGRL 369
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D + P LI L R+G + EA++ + M PD T+ +I G + G
Sbjct: 592 RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D + ++ + PP+ + F L+ L
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P+ I+ LI G++++A V M + PD TY +I G+ K+G A+
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ DM P + IL+ G
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFC 435
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 129 FDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVI 184
F I + + Y PD Y +I L R GK+ A V M K+ D+ P+ +YT ++
Sbjct: 229 FRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLV 288
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RG+ +A+ ++ DM+ P + + L+KGL
Sbjct: 289 RGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGL 326
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ T +A +FD +R+ PD+Y + LI + ++EA ++++ M
Sbjct: 178 SLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP--PEELPFRILLKG------- 221
PD TY +I G + G A N+ M+K P + + L++G
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEI 297
Query: 222 ----LLPHPLLRSKVKKD---FEEL---FPEKHAYDPPEEIF 253
L+ H +L +K + + L E H YD ++I
Sbjct: 298 DEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL 339
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
+VK+F + KQ P + L+ L + G+ A +++ MR+ + PDS T+ +
Sbjct: 157 SVKLFQTM-KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTL 215
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKK 234
I GF K+ +A I++DM P+ + + ++ GL + H +L +KK
Sbjct: 216 INGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKK 273
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F + K+ P +Y K LI R GK A ++ M + + PD +TY +I
Sbjct: 449 AEKVFRQLMKRGVQDPPSY--KTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLI 506
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G LK G A + + M++S P F +L L
Sbjct: 507 DGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAEL 544
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ PDA + LI A G ++ AM+V++ M L PDS +Y+ +IR
Sbjct: 349 FAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIR 396
>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950
OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
Length = 483
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P YIY+ +I L K EA ++++++ + PD YT +IRGF + G A +
Sbjct: 281 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 340
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MIK P E + +++ G
Sbjct: 341 WFEMIKKGMRPNEFAYNVMIHG 362
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K Y PD +Y +I G + A ++W M K+ + P+ Y +I G K G
Sbjct: 310 KDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEI 369
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ Y +M+++ L ++KG H
Sbjct: 370 SLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSH 401
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y+Y LI G +V +M + FP Y ++I+G + +A I
Sbjct: 246 PGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKKQLEAYCI 305
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAYD 247
++++ P+ + + +++G L S K FE + P + AY+
Sbjct: 306 FKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYN 357
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I GK +EA +++++M + + P++ TY +I+GF K+ + +Y+++
Sbjct: 394 MIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALG 453
Query: 208 DPPEELPFRILLKGL 222
P + + L++ L
Sbjct: 454 LKPSGMAYAALVRNL 468
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+ LI AL G ++E ++ + K+ L P Y ++I GF + G+ A + MI
Sbjct: 217 RCLIRALCDGGDVSEGYELLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIA 276
Query: 206 SPDPPEELPFRILLKGLL 223
P ++ ++KGL
Sbjct: 277 WNHFPSMYIYQKIIKGLC 294
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ +++ K QP+ + LI R K+ EA +V+ M+ ++ P++ TY +I
Sbjct: 292 ALKLKNMMGKSGL-QPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLI 350
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELF 240
G+ + G A YEDM+ + + L + L+ GL R + D E L
Sbjct: 351 NGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLV 410
Query: 241 PEKHAYDP 248
P +
Sbjct: 411 PNSSTFSA 418
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D Y LI L + K +A Q + + KE+L P+S T++ +I G +
Sbjct: 375 QRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFE 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ MI+S P E F +L+
Sbjct: 435 LYKSMIRSGCHPNEQTFNMLVSAFC 459
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 40/83 (48%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
+L G+++ A++ + MR+ + P+ T V+ G+ + G + + +DM +
Sbjct: 212 SLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRA 271
Query: 211 EELPFRILLKGLLPHPLLRSKVK 233
++ + L+ G LL S +K
Sbjct: 272 TDVSYNTLIAGHCEKGLLSSALK 294
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI A AR G ++EAM++ M ++ PD TYT ++ GF + G AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
+I+E+M + P F +K
Sbjct: 405 SIFEEMRNAGCKPNICTFNAFIK 427
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 104 LLKMDIVAVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+L +VA++I + +E + A +F+ + ++D + D Y Y LI A A +G+ EA+
Sbjct: 170 MLDNSVVAIIISMLGKEGRVSSAANMFNGL-QEDGFSLDVYSYTSLISAFANSGRYREAV 228
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM-NIYEDMIKSPDPPEELPFRILLKG 221
V++ M ++ P TY ++ F K G+P + + ++ E M P+ + L+
Sbjct: 229 NVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT- 287
Query: 222 LLPHPLLRSKVKKDFEELFPEKHAYD 247
L + + FEE+ +YD
Sbjct: 288 CCKRGSLHQEAAQVFEEMKAAGFSYD 313
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D PDAY Y LI R EA QV+E M+ D TY ++ + K P
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+AM + +M+ + P + + L+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLI 356
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ R GK+ AM ++E MR P+ T+ I+ + G + M
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I++++ P+ + + LL + + S+V F+E+ ++ + P E F L
Sbjct: 441 IFDEINVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEM--KRAGFVPERETFNTL 495
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R +M +A +++ MR + PD TY I + D +A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ MIK P + + ++ G
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIVDG 778
Score = 38.5 bits (88), Expect = 0.045, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K + D Y L+ ++ + EAM+V M P TY +I
Sbjct: 298 AAQVFEEM-KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +DG +AM + M + P+ + LL G
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Score = 38.1 bits (87), Expect = 0.057, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+ + LI A +R G +AM V+ M + PD TY V+ + G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + +M P EL + LL
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLL 566
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L ER + A+ IF+ +R +P+ + I GK E M++++ +
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGC-KPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC 448
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
L PD T+ ++ F ++G ++ ++++M ++ PE F L+
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 89 DEEKLQKFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
D K ++ ++ + + +K DI++ V+ R A +IF +R PD Y
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSG-IVPDVITY 737
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
I + A EA+ V M K P+ TY ++ G+ K +A ED+
Sbjct: 738 NTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN 797
Query: 206 -SPDPPEELPFRIL 218
P P+ R+L
Sbjct: 798 LDPHAPKGEDLRLL 811
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L + R EE A+ +F+ ++ PD Y Y LI+ L G + EA +++ +
Sbjct: 1002 IINGLGKSHRLEE---ALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-----EELPFR 216
++ L P+ T+ +IRG+ G P A +Y+ M+ P E+LP R
Sbjct: 1059 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI L + +++EA +++ M++ L P TY ++ G K+G +A+
Sbjct: 535 EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 594
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E M++ PP + F L L
Sbjct: 595 LFEGMVQKGCPPNTITFNTLFDCL 618
Score = 47.4 bits (111), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
+D++ +D + P A Y LI L+++G++ EA Q++E M P+ Y +I GF
Sbjct: 879 YDLMSDRD-FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A +++ M+K P+ + +L+ L
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCL 971
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A ++GK++E ++++ M + ++ T+ VI G +K G+ DA+++
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 200 YEDMIKSPD-PPEELPFRILLKGL 222
Y D++ D P + L+ GL
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGL 901
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 106 KMDIVAVLIELER--QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
K D V + L+R + +VK F ++D + PD + L+ AL + G EA
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ MR + + P+ TY +I G L+ DA+ ++ +M
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y + I L R GK+NEA ++ + M E PD TYT +I A
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++E M P+ + + LL + L S VK+ + E+ + H D
Sbjct: 315 VFEKMKTGRHKPDRVTYITLLDRFSDNRDLDS-VKQFWSEMEKDGHVPD 362
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A D++R Q P+ + Y LI L R ++++A++++ +M + P + TY I
Sbjct: 382 AFDTLDVMRDQG-ILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 185 RGFLKDGSPADAMNIYEDM 203
+ K G A+ +E M
Sbjct: 441 DYYGKSGDSVSALETFEKM 459
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY LI + G+ + A +++ M KE + PD +TY+ ++ G + ++
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++++ +S P+ + + +++ GL
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGL 1006
Score = 37.7 bits (86), Expect = 0.072, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++I+++ D PD Y LI AL K++ A +V+E M+ PD TY ++
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F + + +M K P+ + F IL+ L
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373
Score = 37.4 bits (85), Expect = 0.098, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+++ A++ F+ ++ + P+ + +LA+ G+ EA Q++ ++ L PDS TY
Sbjct: 448 DSVSALETFEKMKTKG-IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + K G +A+ + +M+++ P+ + L+ L
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548
Score = 37.4 bits (85), Expect = 0.100, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-KEDLFPDSQTYTEVIRGFLKDGS 192
K+ PD Y +I L ++ ++ EA+ ++ M+ + PD TY +I G
Sbjct: 988 KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A IY ++ ++ P F L++G
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRG 1076
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y L+ + ++ Q W M K+ PD T+T ++ K G+ +A
Sbjct: 324 HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ + M P + L+ GLL
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLL 409
Score = 35.4 bits (80), Expect = 0.44, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+AY Y LI L ++ EAM+V+ M E P QTY+ ++ G K M +
Sbjct: 187 NAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLL 246
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M P F I ++ L
Sbjct: 247 KEMETLGLKPNVYTFTICIRVL 268
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 40/160 (25%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L + +R +E A K+F + K+ +P Y L+ L + GK+ EA++++E M
Sbjct: 544 LINTLYKADRVDE---AWKMF-MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 599
Query: 169 RKE----------DLF-------------------------PDSQTYTEVIRGFLKDGSP 193
++ LF PD TY +I G +K+G
Sbjct: 600 VQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQV 659
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+AM + M K P+ + LL G++ L+ K
Sbjct: 660 KEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYK 698
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 4/147 (2%)
Query: 79 VILGLKRFKDDEEKLQKF--IKTHVLRLLKMDIVAVLIELERQEETILAVK-IFDIIRKQ 135
V GLK F D + F + ++ + + ++E R + + + +FD+++K+
Sbjct: 88 VTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKR 147
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ D Y + +L+ G + +A MR+ ++ +Y +I LK +
Sbjct: 148 -IIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 206
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
AM +Y MI P + L+ GL
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGL 233
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + D Y+P+ + Y +I + K+N A ++ M+++ LFP+ TYT +I
Sbjct: 341 AFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400
Query: 185 RGFLKDGSPADA---MNIYED 202
G K GS A MN+ D
Sbjct: 401 NGHCKAGSFGRAYELMNLMGD 421
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+LI+ + ++ I F + ++ D + LI A R KM E+ ++++ +
Sbjct: 467 TILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVS 526
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L P +TYT +I + K+G A+ + +M + P+ + L+ GL ++
Sbjct: 527 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 586
Query: 231 KVK 233
K
Sbjct: 587 ACK 589
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G ++ A++ + +M++ PDS TY +I G K +A +
Sbjct: 531 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 590
Query: 200 YEDMI-KSPDPPE 211
YE MI + PPE
Sbjct: 591 YEAMIDRGLSPPE 603
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ YK ++I R GK+ EA + M + PD+ T T ++ ++G A+
Sbjct: 215 PDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWY 274
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ MI P + F L+ GL + +K+ FE L
Sbjct: 275 FRKMIDLGFKPNLINFTSLIDGLCK----KGSIKQAFEML 310
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K F +++ PD++ Y LI L + ++EA +++E+M L P T +
Sbjct: 551 LALKYFHNMKRHGCV-PDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 609
Query: 184 IRGFLKDGSPADAMNIYE 201
+ K A+AM + E
Sbjct: 610 AYEYCKRNDSANAMILLE 627
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,575,543
Number of Sequences: 539616
Number of extensions: 4598304
Number of successful extensions: 12188
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 10239
Number of HSP's gapped (non-prelim): 1957
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)