BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025186
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 148/242 (61%), Gaps = 6/242 (2%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCH--NEAASMLRNPYDRHELVR-QDVKQVAQVCTNC 73
GC+HY R C ++APCC++++ CR CH NE + R + + + ++ Q C +C
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 78
Query: 74 GVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLC 133
GEY+C IC +D D K Q+HC+ CGICRIG +E++FHC +C C +T+LR H C
Sbjct: 79 STLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 136
Query: 134 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
IEN +CPIC E + S V+ CGH +H CY EM+K + Y CP+C S +DM+R
Sbjct: 137 IENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDMTR 195
Query: 194 TWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPV 253
W+++D E+ T MP +Y++ V ILCNDCN + V FHI+G KC C SYNT
Sbjct: 196 YWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGGRR 255
Query: 254 LP 255
+P
Sbjct: 256 VP 257
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 8/251 (3%)
Query: 1 MEGSANERITFG--KMGYGCKHYRRRCRIRAPCCNEIFDCRHCH--NEAASMLRNPYDRH 56
M +A E G + GC+HY R C ++APCC++++ CR CH NE + R
Sbjct: 1 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV 60
Query: 57 ELVR-QDVKQVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFH 115
+ + + ++ Q C C GEY+CDIC +D D K Q+HC++CGICRIG +E++FH
Sbjct: 61 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFH 118
Query: 116 CKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK 175
C +C C + +L+ H CIEN +CPIC E + S V+ CGH +H CY EM+K
Sbjct: 119 CLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK 178
Query: 176 RDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIG 235
+ Y CP+C S +DM+R W+++D+E+ T MP +Y++ V ILCNDCN + V FHI+G
Sbjct: 179 -EGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILG 237
Query: 236 QKCSHCKSYNT 246
KC C+SYNT
Sbjct: 238 MKCKICESYNT 248
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 141/244 (57%), Gaps = 8/244 (3%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAAS-MLRNPYDRHEL--VRQDVKQVAQVCTNC 73
GC HY R C+++ C+E + CRHCHN+A +L P + L + V+ AQ C C
Sbjct: 141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKYC 200
Query: 74 GVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGR--ENYFHCKRCGSCYSTSLRNNH 131
MG Y+C+ CK +DDD K +HCDDCGICRIG ++YFHCK CG C S+ N H
Sbjct: 201 KNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTH 260
Query: 132 LCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191
CIE S +CPIC EY+F+S + C H +H C+ E I R Y CP C K++I++
Sbjct: 261 RCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYI-RTNYRCPTCYKTIINV 319
Query: 192 SRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNT--RSI 249
+ ++ +D EIE MP Y I CNDCN + +H +G KC+ C SYNT SI
Sbjct: 320 NSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSI 379
Query: 250 APPV 253
P+
Sbjct: 380 YKPL 383
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 116 CKRCGSCYSTSLRNNHLCIENSMHH-HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI 174
K G + R L S+ CP+C E L + + M CGH++ C+ +
Sbjct: 9 AKSTGPGQRSKSRPGALSAPLSLEEARCPVCSEILLEPV----TMPCGHSVCLHCFQRTV 64
Query: 175 KRDKYCCPICSKSVIDMSRTWKRIDEEIEATV 206
K CCP+C V +R R + A +
Sbjct: 65 KLISLCCPLCRLRVSSWARKQSREKSLVNAEL 96
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRI 198
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R+
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWARL 64
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 38.9 bits (89), Expect = 0.039, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS 187
C IC+E +F S +N V+KCGH H C+ + +K + CP C S
Sbjct: 1931 CEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLK-GQSTCPTCGSS 1973
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEE 201
CP+C E + + + C HT C+ E + + CCP+C K V TW R++
Sbjct: 26 CPVCLEIFLEPV----TLPCMHTFCKPCFLETVDKSNMCCPLCRKRV----STWARLNSR 77
Query: 202 IEATVMPEDYRH 213
+ V E +R
Sbjct: 78 NKTLVNMELWRR 89
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKR 197
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWAR 63
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3
PE=2 SV=2
Length = 4903
Score = 37.4 bits (85), Expect = 0.095, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 44/177 (24%)
Query: 69 VCTNCGVNMGEYFCDIC-KFYD--------DDIEKGQFHCDDCGICR----IGGRENYFH 115
VC + G + ++FC C + Y +++ + C +C +C+ G
Sbjct: 345 VCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLV 404
Query: 116 CKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYLFDSLR 154
C C Y T +N +CIE HH+C IC + +
Sbjct: 405 CDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSTQWHHNCLIC-DTCYQQQD 463
Query: 155 NTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDY 211
N CG +CYH +++D C +C + V K D+E+++ + EDY
Sbjct: 464 NLCPF-CG-----KCYHPELQKDMLHCNMCKRWV--HLECDKPTDQELDSQ-LKEDY 511
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 69 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 119
VC NCG N+ Y C C+ + D EK F C+ CG C+ + + K C
Sbjct: 3684 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3731
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 69 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 119
VC NCG N+ Y C C+ + D EK F C+ CG C+ + + K C
Sbjct: 3670 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3717
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 69 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 119
VC NCG N+ Y C C+ + D EK F C+ CG C+ + + K C
Sbjct: 3673 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3720
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPIC 184
C IC+E +F S +N V+KCGH H C+ + +K + CP C
Sbjct: 1957 CEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLK-GQSACPAC 1996
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 41/154 (26%)
Query: 69 VCTNCGVNMGEYFCDIC-KFYD--------DDIEKGQFHCDDCGICR----IGGRENYFH 115
VC + G + ++FC C + Y +++ + C +C +C+ G
Sbjct: 346 VCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLV 405
Query: 116 CKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYLFDSLR 154
C C Y T +N +CIE + HH+C IC + +
Sbjct: 406 CDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSSQWHHNCLIC-DNCYQQQD 464
Query: 155 NTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188
N CG +CYH +++D C +C + V
Sbjct: 465 NLCPF-CG-----KCYHPELQKDMLHCNMCKRWV 492
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
C IC E LF+ + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCQICVEILFEPV----TLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWAR 63
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
CP+C E + + C HT HC+C + K CP+C S + +SR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLN---KWKNSRCPVCRHSSLRLSR 288
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 142 CPICYEYLFDS-LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS------VIDMSRT 194
C IC+E+ ++ + ++CGH +C + +K CP C+K V+ +RT
Sbjct: 287 CTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQARKCPQCNKKAKHSDIVVLYART 346
Query: 195 WKRID----EEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKS 243
+ +D E ++++++ E K+ + C + ++ +CS S
Sbjct: 347 LRALDTSEHERMKSSLLKEQMLRKQAELESAQC----RLQLQVLTDECSKLHS 395
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 196
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 196
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 69 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 119
VC NCG N+ + C C+ + D EK F C CG C+ + + + C
Sbjct: 3806 VCGNCGENV--FQCHKCRAINYD-EKDPFLCHSCGFCKYAKFDFSMYARVC 3853
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 69 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 119
VC NCG N+ + C C+ + D EK F C CG C+ + + + C
Sbjct: 3859 VCGNCGENV--FQCHKCRAINYD-EKDPFLCHSCGFCKYAKFDFSMYARVC 3906
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILLEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 134 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 190
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 274 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 329
Query: 191 MSRTWKRIDEEIEATVMPEDYR 212
S + K ++ EI+A + PEDY+
Sbjct: 330 YSCSGKLLEREIKALLTPEDYQ 351
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
C IC E D ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDG-DKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 151 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 133 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 192
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K + +
Sbjct: 398 VLENELQ--CIICSEYFVEAV----TLNCAHSFCSYCINEWMKR-KVECPICRKDIKSKT 450
Query: 193 RT 194
R+
Sbjct: 451 RS 452
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
C IC E D ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDG-DKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 151 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 151 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 151 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTR 63
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 136 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRT 194
S + C +C FDS +T + CGH C C + ++ + CCPIC + + D+ +
Sbjct: 488 GSRNGECTVC----FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
Query: 195 WK 196
++
Sbjct: 544 YR 545
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 159 MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
+ CGH +H C ++R + CPIC +SVI
Sbjct: 326 LPCGHILHFHCLRNWLERQQ-TCPICRRSVI 355
>sp|Q9WUB0|HOIL1_MOUSE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus
musculus GN=Rbck1 PE=1 SV=2
Length = 508
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 134 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193
+ N+ CP+CY L + +C HT EC I+ + C S
Sbjct: 272 VLNTEPTECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDSTYSC 330
Query: 194 TWKRIDEEIEATVMPEDYR 212
K ++ EI A + PEDY+
Sbjct: 331 PGKLLEREIRALLSPEDYQ 349
>sp|O57415|RREB1_CHICK Ras-responsive element-binding protein 1 OS=Gallus gallus GN=RREB1
PE=2 SV=2
Length = 1615
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 38 CRHCHNEA---ASMLRNPYDRH-ELVRQDVKQVAQVCTNCGVNMGEYFCD---ICKFYDD 90
C+ CH A+ R+ +H ++ R+D+++ + T+ M + FC +CK +
Sbjct: 680 CKICHYPGTVKANCERHLRKKHLKVTRKDIEKNIEYVTSNAAEMVDAFCSPDTVCKLCGE 739
Query: 91 DIEKGQ---FHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMH 139
D++ + H C+ ++ F CK CG+ +S H ++ +H
Sbjct: 740 DLKHYRALRIHMRTHSGCQ---KKKPFECKECGTAFSAKRNCIHHILKQHLH 788
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 133 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 396 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 444
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 133 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 397 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 445
>sp|Q62921|HOIL1_RAT RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Rattus norvegicus GN=Rbck1 PE=1 SV=3
Length = 508
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 134 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 190
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 272 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 327
Query: 191 MSRTWKRIDEEIEATVMPEDYR 212
S K ++ EI A + PEDY+
Sbjct: 328 YSCPGKLLEREIRALLSPEDYQ 349
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 150 FDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 196
FD +T + CGH C C + ++ + CCPIC + + D+ + ++
Sbjct: 507 FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 133 CIENSMHHHCPICY-EYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSK 186
C+ C ICY +Y FD + V+ C H H +C + K CP+C++
Sbjct: 196 CLLEDEEDFCIICYADYAFDDILR--VLPCEHVFHTQCIDTWMTTMKASCPLCNE 248
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 142 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKY-CCPICSKSVIDMSRT 194
CP+C + L D+ TT+ +C HT +C +E I D+ CP+C ID+ T
Sbjct: 20 CPLCDKLLRDA---TTISECLHTFCRKCIYEKITEDEIESCPVCD---IDLGGT 67
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 129 NNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188
+N L ++ C +C ++ + CGHT +C + + C P+C +
Sbjct: 448 SNPLGSFDASDLECSLCMRLFYEPV----TTPCGHTFCLKCLERCLDHNAKC-PLCKDVL 502
Query: 189 ID--MSRTWKR--IDEEIEATVMPEDYRHKK 215
+ SR + + I EE+ AT +PE+++ +K
Sbjct: 503 LQCLPSRKYSKNVILEELIATFLPEEFKERK 533
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189
C IC L + + KC H+ H EC +M + CPIC +V+
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECI-DMWFQSHSTCPICRNTVL 173
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 142 CPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMI 174
CP+C E L S +N + +C H MH +C + MI
Sbjct: 548 CPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMI 582
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 134 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 400 LENELQ--CIICSEYFIEAV----TLNCAHSFCSFCINEWMKR-KVECPICRKDI 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,559,286
Number of Sequences: 539616
Number of extensions: 4000764
Number of successful extensions: 16802
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 16437
Number of HSP's gapped (non-prelim): 661
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)