Query 025186
Match_columns 256
No_of_seqs 192 out of 634
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 2.7E-51 9.1E-56 341.7 7.4 128 3-140 4-142 (143)
2 2k2d_A Ring finger and CHY zin 100.0 7.4E-32 2.5E-36 204.7 3.3 75 181-255 1-75 (79)
3 2ecm_A Ring finger and CHY zin 99.4 4.8E-14 1.6E-18 96.5 2.6 52 137-189 3-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.4 6.3E-13 2.2E-17 99.2 5.2 49 139-189 26-75 (81)
5 1iym_A EL5; ring-H2 finger, ub 99.3 3.9E-13 1.3E-17 92.0 3.6 50 138-189 4-54 (55)
6 2ep4_A Ring finger protein 24; 99.3 3.3E-13 1.1E-17 97.8 2.3 56 135-192 11-66 (74)
7 2kiz_A E3 ubiquitin-protein li 99.3 6.3E-13 2.1E-17 95.1 3.3 53 135-189 10-62 (69)
8 1x4j_A Ring finger protein 38; 99.3 3.9E-13 1.3E-17 98.0 1.6 53 137-191 21-73 (75)
9 1v87_A Deltex protein 2; ring- 99.3 1.5E-12 5.3E-17 101.6 3.6 56 136-191 22-95 (114)
10 2ect_A Ring finger protein 126 99.3 1.7E-12 6E-17 94.9 3.3 52 137-190 13-64 (78)
11 2l0b_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 98.9 2.8 51 137-189 38-88 (91)
12 2ea6_A Ring finger protein 4; 99.2 3E-12 1E-16 90.7 2.5 52 137-189 13-67 (69)
13 3ng2_A RNF4, snurf, ring finge 99.2 2.8E-12 9.4E-17 91.7 2.3 52 137-189 8-62 (71)
14 1g25_A CDK-activating kinase a 99.2 8.2E-12 2.8E-16 88.6 4.2 51 139-189 3-54 (65)
15 2xeu_A Ring finger protein 4; 99.2 4.1E-12 1.4E-16 88.7 2.5 52 138-190 2-56 (64)
16 1e4u_A Transcriptional repress 99.1 3.8E-12 1.3E-16 95.2 0.1 62 137-200 9-72 (78)
17 1chc_A Equine herpes virus-1 r 99.1 1E-11 3.6E-16 88.3 2.1 50 138-191 4-53 (68)
18 2ecn_A Ring finger protein 141 99.1 2.1E-12 7.3E-17 92.6 -2.0 53 137-195 13-65 (70)
19 2ct2_A Tripartite motif protei 99.1 2.5E-11 8.4E-16 90.0 3.1 52 138-189 14-67 (88)
20 3dpl_R Ring-box protein 1; ubi 99.1 4.3E-11 1.5E-15 94.5 3.9 50 139-189 48-100 (106)
21 2d8t_A Dactylidin, ring finger 99.1 3E-11 1E-15 87.2 2.6 48 137-189 13-60 (71)
22 2djb_A Polycomb group ring fin 99.0 4.7E-11 1.6E-15 86.4 2.0 49 138-190 14-62 (72)
23 4ap4_A E3 ubiquitin ligase RNF 99.0 7.7E-11 2.7E-15 92.7 3.0 53 137-190 5-60 (133)
24 1t1h_A Gspef-atpub14, armadill 99.0 9E-11 3.1E-15 85.7 3.1 49 137-189 6-54 (78)
25 2ysl_A Tripartite motif-contai 99.0 1E-10 3.6E-15 84.0 3.3 49 137-189 18-68 (73)
26 2csy_A Zinc finger protein 183 99.0 6.2E-11 2.1E-15 87.4 2.1 48 137-189 13-60 (81)
27 2ecy_A TNF receptor-associated 99.0 1.1E-10 3.8E-15 82.9 2.8 49 138-190 14-62 (66)
28 2yur_A Retinoblastoma-binding 99.0 1.4E-10 4.7E-15 84.6 1.7 51 138-192 14-66 (74)
29 4ayc_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 93.0 2.9 46 140-190 54-99 (138)
30 3lrq_A E3 ubiquitin-protein li 98.9 1.3E-10 4.5E-15 89.5 1.1 48 139-189 22-69 (100)
31 2d8s_A Cellular modulator of i 98.9 2.2E-10 7.6E-15 86.1 2.1 51 137-189 13-69 (80)
32 2ysj_A Tripartite motif-contai 98.9 4.3E-10 1.5E-14 79.0 3.1 44 137-184 18-63 (63)
33 2ecj_A Tripartite motif-contai 98.9 5.2E-10 1.8E-14 76.8 3.3 43 138-184 14-58 (58)
34 4a0k_B E3 ubiquitin-protein li 98.9 1.6E-10 5.4E-15 93.1 0.5 51 138-189 47-111 (117)
35 2egp_A Tripartite motif-contai 98.9 2.3E-10 7.9E-15 83.2 1.1 48 138-189 11-64 (79)
36 3ztg_A E3 ubiquitin-protein li 98.9 3.1E-10 1.1E-14 85.2 1.3 48 138-189 12-61 (92)
37 4ap4_A E3 ubiquitin ligase RNF 98.9 7.4E-10 2.5E-14 87.0 3.4 53 137-190 70-125 (133)
38 1rmd_A RAG1; V(D)J recombinati 98.9 4.9E-10 1.7E-14 87.8 2.2 62 139-204 23-86 (116)
39 2ecw_A Tripartite motif-contai 98.9 9E-10 3.1E-14 80.5 3.4 48 138-189 18-70 (85)
40 3fl2_A E3 ubiquitin-protein li 98.9 6.9E-10 2.4E-14 88.1 2.8 48 139-190 52-99 (124)
41 2y43_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 85.3 2.1 48 139-190 22-69 (99)
42 2ckl_B Ubiquitin ligase protei 98.9 9.7E-10 3.3E-14 91.2 3.7 49 139-190 54-102 (165)
43 2ckl_A Polycomb group ring fin 98.9 6.7E-10 2.3E-14 86.1 2.4 49 138-190 14-62 (108)
44 2ecv_A Tripartite motif-contai 98.9 8.8E-10 3E-14 80.5 2.7 49 137-189 17-70 (85)
45 3l11_A E3 ubiquitin-protein li 98.8 8.6E-10 2.9E-14 86.3 1.5 48 139-190 15-62 (115)
46 3hct_A TNF receptor-associated 98.8 8.7E-10 3E-14 87.0 1.4 75 138-227 17-94 (118)
47 1z6u_A NP95-like ring finger p 98.8 1.8E-09 6.2E-14 89.4 2.6 48 139-190 78-125 (150)
48 1jm7_A BRCA1, breast cancer ty 98.7 3E-09 1E-13 82.1 2.5 47 139-189 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.6 7.5E-09 2.6E-13 74.0 1.3 51 136-191 5-58 (64)
50 1bor_A Transcription factor PM 98.6 7.7E-09 2.6E-13 71.7 0.4 46 136-189 3-48 (56)
51 2vje_B MDM4 protein; proto-onc 98.6 1E-08 3.5E-13 73.1 1.0 50 137-191 5-57 (63)
52 4ic3_A E3 ubiquitin-protein li 98.5 1.3E-08 4.6E-13 74.3 1.0 44 139-191 24-68 (74)
53 1jm7_B BARD1, BRCA1-associated 98.5 1.7E-08 5.9E-13 79.4 1.2 45 139-189 22-66 (117)
54 3knv_A TNF receptor-associated 98.5 1.1E-08 3.8E-13 83.9 0.0 47 138-188 30-76 (141)
55 3hcs_A TNF receptor-associated 98.5 3E-08 1E-12 82.4 1.3 64 138-205 17-81 (170)
56 2y1n_A E3 ubiquitin-protein li 98.4 9.6E-08 3.3E-12 90.7 3.4 50 137-190 330-379 (389)
57 2kr4_A Ubiquitin conjugation f 98.4 1.1E-07 3.9E-12 71.4 2.2 47 138-189 13-59 (85)
58 2ct0_A Non-SMC element 1 homol 98.4 1.5E-07 5.2E-12 70.0 2.6 48 139-189 15-63 (74)
59 2ecg_A Baculoviral IAP repeat- 98.3 8.7E-08 3E-12 69.9 1.1 44 139-191 25-69 (75)
60 2kre_A Ubiquitin conjugation f 98.3 1.7E-07 5.9E-12 72.7 2.7 48 137-189 27-74 (100)
61 2c2l_A CHIP, carboxy terminus 98.3 1.8E-07 6.3E-12 81.7 3.0 51 135-189 204-254 (281)
62 2ea5_A Cell growth regulator w 98.3 1.7E-07 5.7E-12 67.9 1.9 49 136-193 12-61 (68)
63 1wgm_A Ubiquitin conjugation f 98.3 2.9E-07 9.9E-12 71.2 3.0 47 138-189 21-68 (98)
64 1wim_A KIAA0161 protein; ring 98.2 3E-07 1E-11 69.6 2.1 49 138-187 4-61 (94)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.2 4.3E-07 1.5E-11 64.6 2.7 51 135-189 2-58 (60)
66 2yho_A E3 ubiquitin-protein li 98.2 3E-07 1E-11 68.4 0.7 48 139-195 18-66 (79)
67 2yu4_A E3 SUMO-protein ligase 98.2 8.2E-07 2.8E-11 67.6 2.7 47 138-187 6-59 (94)
68 3k1l_B Fancl; UBC, ring, RWD, 98.0 8.6E-07 2.9E-11 83.4 0.4 53 137-189 306-372 (381)
69 2f42_A STIP1 homology and U-bo 97.9 6.6E-06 2.3E-10 70.5 4.3 49 137-189 104-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.8 4.8E-06 1.6E-10 75.5 1.9 50 137-189 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.7 4.5E-06 1.5E-10 77.9 0.3 44 139-191 295-339 (345)
72 2bay_A PRE-mRNA splicing facto 97.3 4.8E-05 1.6E-09 53.9 0.9 48 138-189 2-49 (61)
73 3vk6_A E3 ubiquitin-protein li 97.2 0.00012 4E-09 57.5 2.3 50 141-193 3-52 (101)
74 3nw0_A Non-structural maintena 95.2 0.0098 3.3E-07 52.6 3.0 47 139-188 180-227 (238)
75 2ko5_A Ring finger protein Z; 91.6 0.066 2.3E-06 41.6 1.7 44 139-189 28-72 (99)
76 3a43_A HYPD, hydrogenase nicke 90.0 0.11 3.6E-06 42.3 1.6 39 214-252 67-124 (139)
77 2jun_A Midline-1; B-BOX, TRIM, 89.2 0.15 5.1E-06 38.1 1.8 34 139-174 3-38 (101)
78 2lbm_A Transcriptional regulat 87.0 0.47 1.6E-05 39.0 3.6 66 134-204 58-139 (142)
79 3v43_A Histone acetyltransfera 84.9 0.2 6.9E-06 38.9 0.3 75 108-186 21-111 (112)
80 2ysm_A Myeloid/lymphoid or mix 84.5 0.2 6.7E-06 38.7 0.1 81 100-187 8-104 (111)
81 2kdx_A HYPA, hydrogenase/ureas 84.3 0.36 1.2E-05 37.8 1.5 37 214-252 70-107 (119)
82 2kwj_A Zinc finger protein DPF 76.9 0.18 6E-06 39.5 -2.6 85 100-189 2-110 (114)
83 2jrp_A Putative cytoplasmic pr 76.3 0.37 1.3E-05 36.2 -0.8 68 138-234 1-71 (81)
84 4bbq_A Lysine-specific demethy 75.1 0.71 2.4E-05 35.6 0.5 46 140-186 60-113 (117)
85 2jne_A Hypothetical protein YF 72.8 0.41 1.4E-05 37.3 -1.4 67 138-233 31-100 (101)
86 1weo_A Cellulose synthase, cat 63.8 6.3 0.00021 30.2 3.5 56 134-189 11-69 (93)
87 2lri_C Autoimmune regulator; Z 57.0 7.2 0.00025 27.6 2.7 46 137-187 10-59 (66)
88 1we9_A PHD finger family prote 56.6 1.1 3.7E-05 31.1 -1.7 49 138-187 5-58 (64)
89 1zfo_A LAsp-1; LIM domain, zin 54.9 2.5 8.7E-05 25.5 -0.0 30 138-170 2-31 (31)
90 3lqh_A Histone-lysine N-methyl 51.7 4.1 0.00014 34.5 0.8 51 140-190 3-66 (183)
91 1g47_A Pinch protein; LIM doma 50.1 6.4 0.00022 27.2 1.5 43 137-190 9-51 (77)
92 2egq_A FHL1 protein; LIM domai 50.0 4.9 0.00017 27.9 0.8 42 138-190 14-58 (77)
93 3uk3_C Zinc finger protein 217 49.1 16 0.00055 22.7 3.3 17 177-193 3-19 (57)
94 1x61_A Thyroid receptor intera 48.6 7.1 0.00024 26.7 1.5 40 139-189 5-44 (72)
95 2k16_A Transcription initiatio 47.2 3.5 0.00012 29.3 -0.3 49 139-189 18-70 (75)
96 1f62_A Transcription factor WS 46.1 8.8 0.0003 25.1 1.6 45 141-187 2-50 (51)
97 1x63_A Skeletal muscle LIM-pro 45.8 6 0.00021 27.8 0.8 41 139-190 15-55 (82)
98 2k4x_A 30S ribosomal protein S 45.1 15 0.00052 25.1 2.7 27 95-121 17-44 (55)
99 4ayb_P DNA-directed RNA polyme 44.2 13 0.00044 25.2 2.1 28 77-104 1-31 (48)
100 1wil_A KIAA1045 protein; ring 44.1 19 0.00065 27.3 3.3 32 137-173 13-47 (89)
101 2dkt_A Ring finger and CHY zin 43.4 5.3 0.00018 32.8 0.2 28 80-107 99-126 (143)
102 1vq8_Z 50S ribosomal protein L 43.1 6.5 0.00022 29.3 0.6 40 59-109 13-58 (83)
103 3ql9_A Transcriptional regulat 43.0 18 0.00062 29.0 3.3 52 133-189 51-113 (129)
104 1bbo_A Human enhancer-binding 42.7 14 0.00047 23.1 2.1 13 179-191 2-14 (57)
105 3v43_A Histone acetyltransfera 42.5 16 0.00054 28.0 2.8 27 159-185 30-62 (112)
106 2l5u_A Chromodomain-helicase-D 41.3 11 0.00036 26.0 1.5 48 135-187 7-58 (61)
107 1iml_A CRIP, cysteine rich int 40.5 5.9 0.0002 27.6 0.0 39 141-191 2-40 (76)
108 1x4l_A Skeletal muscle LIM-pro 40.5 12 0.00041 25.6 1.6 41 139-190 5-47 (72)
109 2ysm_A Myeloid/lymphoid or mix 40.2 9.6 0.00033 28.9 1.2 47 137-185 5-55 (111)
110 1b8t_A Protein (CRP1); LIM dom 38.3 3 0.0001 34.6 -2.1 67 140-242 116-182 (192)
111 3mjh_B Early endosome antigen 38.2 16 0.00054 22.9 1.7 14 178-191 5-18 (34)
112 1wyh_A SLIM 2, skeletal muscle 37.9 7.6 0.00026 26.5 0.3 41 139-190 5-45 (72)
113 2jvx_A NF-kappa-B essential mo 37.9 10 0.00035 22.8 0.8 16 178-193 3-18 (28)
114 1x6a_A LIMK-2, LIM domain kina 37.6 11 0.00038 26.3 1.1 39 139-190 15-53 (81)
115 2ehe_A Four and A half LIM dom 37.0 12 0.00042 26.2 1.3 41 139-190 15-55 (82)
116 2cu8_A Cysteine-rich protein 2 36.2 9.2 0.00032 26.5 0.5 41 138-190 8-48 (76)
117 1x4k_A Skeletal muscle LIM-pro 36.1 12 0.00041 25.4 1.1 41 139-190 5-45 (72)
118 2dj7_A Actin-binding LIM prote 35.8 14 0.0005 26.1 1.5 42 137-190 13-54 (80)
119 2fiy_A Protein FDHE homolog; F 35.5 15 0.0005 33.5 1.8 50 178-244 182-231 (309)
120 2kmk_A Zinc finger protein GFI 35.3 27 0.00091 23.1 2.8 17 177-193 28-44 (82)
121 1x68_A FHL5 protein; four-and- 35.1 14 0.00048 25.6 1.3 40 139-189 5-46 (76)
122 2e6s_A E3 ubiquitin-protein li 34.8 14 0.00047 26.9 1.2 64 110-186 7-76 (77)
123 3gox_A Restriction endonucleas 34.5 26 0.00089 30.2 3.1 73 106-189 68-148 (200)
124 2co8_A NEDD9 interacting prote 34.4 11 0.00039 26.7 0.7 42 137-190 13-54 (82)
125 1mm2_A MI2-beta; PHD, zinc fin 33.3 13 0.00044 25.5 0.9 49 136-188 6-57 (61)
126 1vq8_1 50S ribosomal protein L 32.7 18 0.00061 25.3 1.4 28 212-242 12-39 (57)
127 2adr_A ADR1; transcription reg 32.2 22 0.00076 22.3 1.8 15 178-192 2-16 (60)
128 1znf_A 31ST zinc finger from X 31.9 27 0.00092 17.8 1.9 14 179-192 2-15 (27)
129 1klr_A Zinc finger Y-chromosom 31.4 27 0.00094 18.0 1.9 16 178-193 2-17 (30)
130 2cup_A Skeletal muscle LIM-pro 31.3 13 0.00045 27.0 0.6 40 139-189 5-44 (101)
131 2lce_A B-cell lymphoma 6 prote 30.9 38 0.0013 22.3 2.9 16 177-192 16-31 (74)
132 3iz5_l 60S ribosomal protein L 30.7 20 0.00068 27.5 1.5 31 212-245 11-48 (94)
133 2cor_A Pinch protein; LIM doma 30.5 19 0.00064 25.4 1.3 41 137-190 13-53 (79)
134 3v2d_5 50S ribosomal protein L 30.3 18 0.00061 25.3 1.2 30 216-250 29-58 (60)
135 2cs3_A Protein C14ORF4, MY039 30.1 28 0.00097 26.2 2.3 65 137-205 13-86 (93)
136 2m0e_A Zinc finger and BTB dom 29.7 31 0.0011 17.5 2.0 16 178-193 2-17 (29)
137 4a18_A RPL37, ribosomal protei 29.5 20 0.00067 27.5 1.3 30 213-245 12-48 (94)
138 1x3h_A Leupaxin; paxillin fami 29.4 19 0.00066 24.9 1.2 39 139-190 15-53 (80)
139 3u5n_A E3 ubiquitin-protein li 29.4 17 0.00059 30.5 1.1 46 136-188 4-55 (207)
140 3i2d_A E3 SUMO-protein ligase 29.3 28 0.00096 32.6 2.7 48 139-189 249-299 (371)
141 1ard_A Yeast transcription fac 29.3 33 0.0011 17.6 2.0 15 178-192 2-16 (29)
142 6rxn_A Rubredoxin; electron tr 28.9 26 0.00088 23.2 1.7 28 77-104 2-38 (46)
143 2puy_A PHD finger protein 21A; 28.7 75 0.0026 21.3 4.2 24 100-125 6-29 (60)
144 1vd4_A Transcription initiatio 28.7 27 0.00093 22.7 1.8 13 111-123 37-49 (62)
145 2kgg_A Histone demethylase jar 28.6 7.2 0.00025 26.0 -1.1 44 141-185 4-52 (52)
146 2v3b_B Rubredoxin 2, rubredoxi 28.6 29 0.001 23.7 2.0 12 77-88 1-12 (55)
147 4fo9_A E3 SUMO-protein ligase 28.4 29 0.001 32.4 2.6 48 139-189 215-265 (360)
148 2kvf_A Zinc finger and BTB dom 28.2 29 0.00098 17.9 1.6 15 178-192 3-17 (28)
149 2zjr_Z 50S ribosomal protein L 28.2 27 0.00091 24.4 1.8 31 215-250 28-58 (60)
150 1x5w_A Zinc finger protein 64, 27.9 25 0.00087 23.0 1.6 22 177-198 36-57 (70)
151 4gzn_C ZFP-57, zinc finger pro 27.8 52 0.0018 22.0 3.2 41 177-228 3-43 (60)
152 3f6q_B LIM and senescent cell 27.7 17 0.00059 24.3 0.7 44 137-191 9-52 (72)
153 2gmg_A Hypothetical protein PF 27.6 26 0.00089 27.3 1.8 33 215-248 65-97 (105)
154 1p7a_A BF3, BKLF, kruppel-like 27.4 35 0.0012 19.0 2.0 17 177-193 10-26 (37)
155 1wep_A PHF8; structural genomi 26.9 26 0.00088 25.1 1.5 48 140-189 13-65 (79)
156 1llm_C Chimera of ZIF23-GCN4; 26.5 48 0.0017 22.6 3.0 13 178-190 31-43 (88)
157 2l3k_A Rhombotin-2, linker, LI 26.5 19 0.00066 27.4 0.9 39 140-189 9-47 (123)
158 1twf_L ABC10-alpha, DNA-direct 26.4 36 0.0012 24.4 2.2 7 98-104 47-53 (70)
159 2cur_A Skeletal muscle LIM-pro 26.4 26 0.00088 23.6 1.4 38 139-189 5-42 (69)
160 1x6e_A Zinc finger protein 24; 26.1 29 0.001 22.8 1.7 15 177-191 13-27 (72)
161 2d8x_A Protein pinch; LIM doma 26.1 21 0.00071 24.1 0.9 40 139-191 5-44 (70)
162 2g45_A Ubiquitin carboxyl-term 25.9 26 0.00091 27.9 1.6 25 218-245 35-61 (129)
163 2d9h_A Zinc finger protein 692 25.8 76 0.0026 20.9 3.8 17 177-193 6-22 (78)
164 2elr_A Zinc finger protein 406 25.6 48 0.0016 18.2 2.4 17 177-193 8-24 (36)
165 1e8j_A Rubredoxin; iron-sulfur 25.5 45 0.0015 22.5 2.5 12 77-88 1-12 (52)
166 2cuq_A Four and A half LIM dom 25.3 32 0.0011 23.7 1.8 38 139-189 15-52 (80)
167 2kvh_A Zinc finger and BTB dom 25.1 35 0.0012 17.5 1.6 15 178-192 3-17 (27)
168 3a7q_B Low-density lipoprotein 25.1 55 0.0019 20.8 2.8 32 111-143 10-43 (44)
169 1paa_A Yeast transcription fac 25.0 36 0.0012 17.7 1.7 16 178-193 2-17 (30)
170 3asl_A E3 ubiquitin-protein li 24.8 1E+02 0.0036 21.5 4.5 37 88-125 8-45 (70)
171 2kvg_A Zinc finger and BTB dom 24.5 30 0.001 18.0 1.2 15 178-192 3-17 (27)
172 1v6g_A Actin binding LIM prote 24.4 27 0.00092 24.3 1.2 39 139-190 15-53 (81)
173 1wii_A Hypothetical UPF0222 pr 24.2 44 0.0015 24.9 2.4 39 177-233 22-63 (85)
174 1v5n_A PDI-like hypothetical p 24.2 38 0.0013 25.0 2.0 12 110-121 58-69 (89)
175 1ajj_A LR5, low-density lipopr 24.1 43 0.0015 20.5 2.0 31 112-143 5-37 (37)
176 1rim_A E6APC2 peptide; E6-bind 23.9 45 0.0015 18.4 2.0 16 178-193 2-17 (33)
177 2m0f_A Zinc finger and BTB dom 23.5 38 0.0013 17.3 1.5 15 178-192 2-16 (29)
178 1rik_A E6APC1 peptide; E6-bind 23.3 31 0.0011 17.8 1.1 15 178-192 2-16 (29)
179 2ct1_A Transcriptional repress 22.8 44 0.0015 22.2 2.1 14 178-191 15-28 (77)
180 3ihp_A Ubiquitin carboxyl-term 22.4 22 0.00076 36.4 0.6 81 143-245 160-242 (854)
181 2zkr_2 60S ribosomal protein L 22.2 35 0.0012 26.3 1.5 31 213-246 12-49 (97)
182 2m0d_A Zinc finger and BTB dom 22.1 36 0.0012 17.5 1.2 16 178-193 3-18 (30)
183 1a1h_A QGSR zinc finger peptid 21.9 57 0.002 21.9 2.6 16 177-192 33-48 (90)
184 2lvu_A Zinc finger and BTB dom 27.5 19 0.00065 18.5 0.0 14 178-191 2-15 (26)
185 2emz_A ZFP-95, zinc finger pro 21.8 85 0.0029 18.4 3.1 17 177-193 11-27 (46)
186 3h0g_L DNA-directed RNA polyme 21.8 51 0.0017 23.3 2.2 12 93-104 35-46 (63)
187 2dar_A PDZ and LIM domain prot 21.4 32 0.0011 24.5 1.2 42 136-190 22-63 (90)
188 1dx8_A Rubredoxin; electron tr 21.3 52 0.0018 23.5 2.3 14 75-88 3-16 (70)
189 3o70_A PHD finger protein 13; 21.2 9.6 0.00033 27.0 -1.7 48 137-187 17-67 (68)
190 1qf8_A Casein kinase II; casei 21.2 39 0.0013 28.6 1.8 15 23-37 131-145 (182)
191 2ku3_A Bromodomain-containing 20.5 21 0.00073 25.4 -0.0 51 135-186 12-65 (71)
192 1ptq_A Protein kinase C delta 20.4 51 0.0017 21.0 1.9 10 94-103 26-35 (50)
193 1x62_A C-terminal LIM domain p 20.0 42 0.0014 23.3 1.5 40 138-190 14-53 (79)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=2.7e-51 Score=341.66 Aligned_cols=128 Identities=44% Similarity=1.091 Sum_probs=119.9
Q ss_pred CCccccccCCCCccCCccccCCceeEcCcCCCeecCCcchhhhhccCCCCCCCceecchhhhhh-----------hhccc
Q 025186 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQV-----------AQVCT 71 (256)
Q Consensus 3 ~~~~~~~~~~~~~~GC~HY~R~cki~apcC~~~y~CR~CHde~~~~~~~~~~~H~l~r~~v~~v-----------~~~C~ 71 (256)
++....+|++++++||+||+|+|+|+||||++|||||+||||++ +|+|+|+++++| ++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~--------dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE--------DHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS--------SSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc--------ccccchhccceeeecccCccccccCcCC
Confidence 45556789999999999999999999999999999999999976 799999988877 78999
Q ss_pred ccCcccceeeCCccccccCCCCCCcccCCCCCccccCCccceeecCccCccccccccCcceeecCCCCC
Q 025186 72 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 140 (256)
Q Consensus 72 ~Cg~~f~~y~C~~C~l~dd~~~k~~yHC~~CgiCRvG~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~~ 140 (256)
+||+.||+|||+|||||| ++|+||||++|||||||+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999875
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=7.4e-32 Score=204.66 Aligned_cols=75 Identities=41% Similarity=0.810 Sum_probs=40.3
Q ss_pred CCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeecCCCCCCccccccCCCCCC
Q 025186 181 CPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 255 (256)
Q Consensus 181 CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~~~~~~ 255 (256)
||+|+||++||+.+|++||++|+++|||++|++++|+|+||||+++|.++||||||||++|+||||++++++..|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~ 75 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRIS 75 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999865443
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=4.8e-14 Score=96.45 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+.+..||||++.+.++...+++++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4568899999998777677889999999999999999984 589999998764
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-13 Score=99.23 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=39.7
Q ss_pred CCCCchhhhhhcccCCccEEe-ccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~L-pCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+..||||++++..+ +.+++| +|||.||..||.+|++ .+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcc
Confidence 56799999986554 444454 5999999999999998 4679999999875
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=3.9e-13 Score=92.02 Aligned_cols=50 Identities=28% Similarity=0.694 Sum_probs=41.7
Q ss_pred CCCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.+..||||++.+.+ .+.+..|+ |||.||..|+.+|++ .+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 35689999998554 45677787 999999999999998 5789999998764
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.3e-13 Score=97.81 Aligned_cols=56 Identities=23% Similarity=0.694 Sum_probs=46.6
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchh
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 192 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~ 192 (256)
+...+..||||++.+ .....+.+|||||.||..|+.+|++. +.+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 445678999999984 44567788999999999999999984 579999999998653
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=95.13 Aligned_cols=53 Identities=25% Similarity=0.599 Sum_probs=44.5
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+......||||++.+ .....++.|||||.||..|+.+|+. .+.+||+||+.+.
T Consensus 10 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCC-CSSSCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccc-cCCCcEEEeCCCCHHHHHHHHHHHH-cCCCCcCcCcccc
Confidence 345567899999985 4446788899999999999999998 4678999999876
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-13 Score=98.00 Aligned_cols=53 Identities=26% Similarity=0.592 Sum_probs=44.6
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
.....||||++.+ ...+.++.|||||.||..|+.+|++ .+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 4567899999985 4446788999999999999999998 468999999988643
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.27 E-value=1.5e-12 Score=101.62 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=43.6
Q ss_pred CCCCCCCchhhhhhcccC--------------CccEEeccCCccChhhHHHHhc----CCCCCCCCCCccccch
Q 025186 136 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVIDM 191 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~--------------~~v~~LpCGH~~H~~Cl~~~~~----~~~~~CPiCrksv~dm 191 (256)
...+..|||||++|.... ..++.|+|||.||..||.+|+. ..+.+||+||+.+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999975432 2344789999999999999994 2468999999988754
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=1.7e-12 Score=94.89 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=44.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....||||++.+ .....+.+|+|||.||..|+.+|++ .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 3467899999984 4446778899999999999999998 56899999999874
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=98.86 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=43.3
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+..||||++.+.. ...++.|||||.||..|+.+|+. .+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 346689999998544 46788899999999999999998 5789999999875
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3e-12 Score=90.74 Aligned_cols=52 Identities=29% Similarity=0.658 Sum_probs=42.8
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.....||||++.+.+. ...++.++|||.||..|+.+|+. .+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-HCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-cCCCCCCCCCccC
Confidence 4467899999986553 23447899999999999999998 4789999998875
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=2.8e-12 Score=91.74 Aligned_cols=52 Identities=29% Similarity=0.658 Sum_probs=43.3
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+..||||++.+.+. ...++.++|||.||..|+.+|++ .+.+||+||+.+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccC
Confidence 4567899999986553 24457899999999999999998 4679999999887
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=8.2e-12 Score=88.55 Aligned_cols=51 Identities=25% Similarity=0.522 Sum_probs=41.9
Q ss_pred CCCCchhhh-hhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle-~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+..||||++ .+.+....+..++|||.|+..|+.+|+..+..+||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 468999999 655543444678999999999999997656789999999986
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=4.1e-12 Score=88.74 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 356899999986552 244578999999999999999984 7899999998873
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=3.8e-12 Score=95.25 Aligned_cols=62 Identities=23% Similarity=0.577 Sum_probs=48.4
Q ss_pred CCCCCCchhhhhhcccCCccEEec--cCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHHHH
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMK--CGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDE 200 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~Lp--CGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~~~lD~ 200 (256)
..+..||||+|.+ +. .++.++| |||.|+..|+..+.....++||+||+.+..+...|+++|+
T Consensus 9 ~~~~~CpICle~~-~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 72 (78)
T 1e4u_A 9 EDPVECPLCMEPL-EI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72 (78)
T ss_dssp CCCCBCTTTCCBC-CT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCC
T ss_pred ccCCcCCccCccC-cc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCH
Confidence 3457899999975 32 3445555 9999999999999865678999999999987777765543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1e-11 Score=88.32 Aligned_cols=50 Identities=26% Similarity=0.637 Sum_probs=42.3
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
.+..||||++.+. ++++.+||||.||..|+.+|++ .+.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 4578999999843 3568899999999999999998 468999999998753
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-12 Score=92.58 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=43.7
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHh
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTW 195 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~ 195 (256)
.....||||++.+.+ +.|||||.||..|+.+|+. ...+||+||+.+......|
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence 346789999997432 7899999999999999998 6789999999988654443
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=89.98 Aligned_cols=52 Identities=29% Similarity=0.702 Sum_probs=43.0
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC--CCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~--~~~CPiCrksv~ 189 (256)
....||||++.+.++....+.|+|||.||..|+.+|+... ..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 4568999999866554447788999999999999999743 489999999875
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.09 E-value=4.3e-11 Score=94.49 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=38.1
Q ss_pred CCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+..|+||++++.++ ..+++.|+|||.||..||.+||. .+.+||+||+.+.
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 44677777654322 22467789999999999999998 5789999999853
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=87.19 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=40.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.....||||++.+. ..+.|+|||.||..|+.+|+. .+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhC
Confidence 44578999999752 346789999999999999998 4689999999987
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.7e-11 Score=86.37 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=40.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.+..||||++.+.+ ++.+++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCc
Confidence 45689999997533 555569999999999999997 47899999998863
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=7.7e-11 Score=92.69 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.7
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
+.+..||||++.+.+. .+.++.++|||.||..|+.+|++ .+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3457899999986543 34458899999999999999998 46799999999873
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=9e-11 Score=85.67 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=40.9
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+..||||++.| . ++ +.++|||+|++.|+.+|+..++.+||+|++.+.
T Consensus 6 ~~~~~C~IC~~~~-~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELM-K--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCC-S--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccc-c--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3467899999975 3 23 457999999999999999865789999999986
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=84.01 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=40.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC--CCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~--~~~~CPiCrksv~ 189 (256)
.....||||++.+ . ..+.|+|||.||..|+.+|++. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDIL-Q---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBC-S---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCccc-C---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4467899999974 3 3456799999999999999962 4679999999875
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=6.2e-11 Score=87.42 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=40.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.....||||++.+ . ++ ++++|||+||..|+.+|+. ...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF-Q--NP-VVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC-C--SE-EECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh-c--Ce-eEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3456899999975 2 23 4689999999999999997 4789999999986
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=82.87 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=40.0
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.+..||||++.+ . +++. ++|||.||..|+.+|+.....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~-~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVL-C--SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEE-S--SCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHh-c--CeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 356799999975 3 2343 89999999999999996567899999998863
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-10 Score=84.55 Aligned_cols=51 Identities=24% Similarity=0.594 Sum_probs=40.1
Q ss_pred CCCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcCC-CCCCCCCCccccchh
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMS 192 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~Cl~~~~~~~-~~~CPiCrksv~dm~ 192 (256)
.+..||||++.+.+ .+.|+ |||.||..|+.+|+... ..+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35689999997532 34588 99999999999999742 379999999876443
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.96 E-value=2.2e-10 Score=92.96 Aligned_cols=46 Identities=35% Similarity=0.852 Sum_probs=39.3
Q ss_pred CCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 140 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
..||||++.+. ..+.|||||+||..|+..|+. .+.+||+||+.+..
T Consensus 54 ~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFI----EAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred CCCcccCcccC----CceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 46999999753 345789999999999999998 57899999999864
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.94 E-value=1.3e-10 Score=89.53 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+..||||++.+ . +++..++|||.||..|+.+|+.....+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKL-R--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccc-c--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45799999975 3 356559999999999999999854479999999986
No 31
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.2e-10 Score=86.12 Aligned_cols=51 Identities=29% Similarity=0.605 Sum_probs=40.8
Q ss_pred CCCCCCchhhhhhcccCCccEEeccC-----CccChhhHHHHhcCC-CCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCG-----H~~H~~Cl~~~~~~~-~~~CPiCrksv~ 189 (256)
+.+..|+||+++ |+...+ .++||+ |.||..||++||... ..+||+||..+.
T Consensus 13 ~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 456789999998 444344 469996 999999999999753 369999999886
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.3e-10 Score=78.98 Aligned_cols=44 Identities=27% Similarity=0.792 Sum_probs=35.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC--CCCCCCCC
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 184 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~--~~~~CPiC 184 (256)
..+..||||++.+. ..++|+|||.||..|+.+|++. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34678999999743 2456799999999999999973 46789998
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.2e-10 Score=76.78 Aligned_cols=43 Identities=28% Similarity=0.892 Sum_probs=35.0
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC--CCCCCCCC
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 184 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~--~~~~CPiC 184 (256)
....||||++.+.+ + +.|+|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999998533 3 45899999999999999653 57899998
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.91 E-value=1.6e-10 Score=93.07 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=0.9
Q ss_pred CCCCCchhhhhhccc--------------CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s--------------~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...+|+||+++|.+. ...+..++|||.||..|+.+||. .+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 346899999886431 11344469999999999999998 4789999998753
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.90 E-value=2.3e-10 Score=83.21 Aligned_cols=48 Identities=33% Similarity=0.723 Sum_probs=39.4
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC------CCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~------~~~CPiCrksv~ 189 (256)
.+..||||++.+ . ++ +.|+|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 11 ~~~~C~IC~~~~-~--~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELL-T--EP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEEC-S--SC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCccc-C--Ce-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 356899999974 3 23 448999999999999999742 679999999986
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.88 E-value=3.1e-10 Score=85.23 Aligned_cols=48 Identities=25% Similarity=0.668 Sum_probs=38.8
Q ss_pred CCCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcC-CCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~Cl~~~~~~-~~~~CPiCrksv~ 189 (256)
.+..||||++.| . ..+.|+ |||+|+..|+.+|+.. +..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~-~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIM-T---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEEC-S---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhh-c---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456899999975 3 235678 9999999999999863 3479999999974
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=7.4e-10 Score=87.04 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.3
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....||||++.+.+. ...++.++|||.||..|+++|++ .+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 4567899999986542 23457889999999999999998 46799999999873
No 38
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=4.9e-10 Score=87.82 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=45.7
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchh--HHhHHHHHHHHh
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS--RTWKRIDEEIEA 204 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~--~~~~~lD~~i~~ 204 (256)
+..||||++.+ . ++ +.++|||.|+..|+.+|+.....+||+||+.+..-. .....|.++|..
T Consensus 23 ~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 23 SISCQICEHIL-A--DP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HTBCTTTCSBC-S--SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCcHh-c--Cc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 46899999975 3 23 448999999999999999855789999999987422 223445555544
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=9e-10 Score=80.48 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=39.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-----CCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~-----~~~CPiCrksv~ 189 (256)
....||||++.+.+ + ++++|||.||..|+.+|+... ..+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKE---P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSS---C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCc---c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 45689999997422 3 478999999999999999742 689999999876
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.87 E-value=6.9e-10 Score=88.07 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=40.2
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
+..||||++.+. ..+.++|||.||..|+..|+.....+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457999999753 235579999999999999998666799999999974
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.87 E-value=5.5e-10 Score=85.25 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=39.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...||||++.+ . +++..++|||.||..|+..|+. .+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYF-N--IAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhh-C--CcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 46899999975 3 2555569999999999999998 56899999999873
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.86 E-value=9.7e-10 Score=91.24 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=41.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
+..||||++.+ . +++..++|||.||..|+..|+..+..+||+||+.+..
T Consensus 54 ~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDML-K--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBC-S--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHh-h--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34799999975 3 3666679999999999999998657899999999853
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.86 E-value=6.7e-10 Score=86.15 Aligned_cols=49 Identities=29% Similarity=0.644 Sum_probs=40.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.+..||||++.+ . +++..++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF-I--DATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC-S--SEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCS
T ss_pred CcCCCccCChHH-h--CcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccc
Confidence 356899999975 3 3566669999999999999998 46899999999874
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=8.8e-10 Score=80.53 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=40.0
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-----CCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~-----~~~~CPiCrksv~ 189 (256)
.....||||++.+ . ..+.|+|||.||..|+.+|+.. ...+||+||+.+.
T Consensus 17 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELL-T---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCC-S---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCccc-C---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3467899999975 3 2345799999999999999874 2689999999887
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.81 E-value=8.6e-10 Score=86.31 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=40.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
+..||||++.+. ..+.|+|||+|+..|+..|+..+..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457999999753 245679999999999999998667899999999863
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=8.7e-10 Score=87.05 Aligned_cols=75 Identities=21% Similarity=0.453 Sum_probs=52.3
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhH-HhHHHHHHHHhcCCChhhhcCee
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEIEATVMPEDYRHKKV 216 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~-~~~~lD~~i~~~pmP~~y~~~~v 216 (256)
.+..||||++.+.+ + +.++|||.|+..|+.+|+.....+||+||+.+..... .-..+.++|.+ .
T Consensus 17 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~-----------l 81 (118)
T 3hct_A 17 SKYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS-----------L 81 (118)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT-----------S
T ss_pred CCCCCCcCChhhcC---e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcc-----------c
Confidence 34689999997532 3 5589999999999999998555699999999875321 11344454544 2
Q ss_pred EEEc--cCCCCcc
Q 025186 217 WILC--NDCNDTT 227 (256)
Q Consensus 217 ~I~C--nDC~~~s 227 (256)
.|.| ..|+.+.
T Consensus 82 ~v~C~n~gC~~~~ 94 (118)
T 3hct_A 82 MVKCPNEGCLHKM 94 (118)
T ss_dssp EEECSSTTCCCEE
T ss_pred eeECCCCCCCCEE
Confidence 4667 5777543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.78 E-value=1.8e-09 Score=89.41 Aligned_cols=48 Identities=21% Similarity=0.571 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...||||++.+ . ++ +.|+|||+|+..|+..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~~-~--~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELV-Y--QP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBC-S--SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhh-c--CC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 46799999974 3 23 4489999999999999998666799999999874
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=3e-09 Score=82.09 Aligned_cols=47 Identities=26% Similarity=0.716 Sum_probs=37.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC--CCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~--~~~CPiCrksv~ 189 (256)
...||||++.+ . ++ +.++|||.||..|+..|+... ..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELI-K--EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCC-S--SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhh-c--Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45899999974 3 23 348999999999999999742 358999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=7.5e-09 Score=73.98 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=40.7
Q ss_pred CCCCCCCchhhhhhcccCCccEEe--ccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~L--pCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
...+..|+||++.. ..+.++ ||||. |...|+..|.. .+.+||+||+.+.+.
T Consensus 5 ~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 5 LNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMI 58 (64)
T ss_dssp CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEE
T ss_pred CCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhce
Confidence 34567899999973 234555 99999 78999999997 467999999998754
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=7.7e-09 Score=71.75 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=36.8
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
......||||++.+ .. .+.|||||+|+..|+..| ..+||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~-~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEA-KC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSC-BC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred cccCCCceEeCCcc-CC---eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 34567899999974 32 367899999999999774 579999999875
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=1e-08 Score=73.05 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=39.7
Q ss_pred CCCCCCchhhhhhcccCCccEEe--ccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~L--pCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
.....|+||++... +..++ ||||. |...|+..|.+ .+.+||+||+.+.+.
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhce
Confidence 34578999999632 23344 99998 99999999987 457999999998754
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.54 E-value=1.3e-08 Score=74.33 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=37.1
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
+..|+||++.+ ...+.|||||. |+..|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 46899999974 34677899999 999999888 6899999998753
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=1.7e-08 Score=79.40 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=37.5
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+..||||++.+ . +++...+|||+|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL-R--EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC-S--SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHh-h--CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 56899999974 3 3454449999999999999986 78999999985
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.52 E-value=1.1e-08 Score=83.94 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 188 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv 188 (256)
.+..||||++.|.+ + +.++|||.|++.|+.+|+..+..+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35689999997533 4 45899999999999999986667999999965
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=3e-08 Score=82.42 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=46.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHH-hHHHHHHHHhc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRT-WKRIDEEIEAT 205 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~-~~~lD~~i~~~ 205 (256)
.+..||||++.|.+ + +.++|||+|++.|+.+|+..+..+||+||+.+..-..+ -..+..+|.+.
T Consensus 17 ~~~~C~IC~~~~~~---p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 17 SKYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCChhhcC---c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 35689999997532 4 45899999999999999975556999999998742211 12445555553
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.41 E-value=9.6e-08 Score=90.74 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=41.7
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
+....||||++.+ ..++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 330 ~~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3346899999974 3467899999999999999997456899999999874
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.37 E-value=1.1e-07 Score=71.37 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=39.8
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.+..||||++.| . +.++++|||+|-+.||.+|+. ++.+||+|+..+.
T Consensus 13 ~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T---DPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S---SEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCchh-c---CCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 467899999975 3 345678999999999999998 4789999999886
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.5e-07 Score=69.96 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=37.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-CCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~-~~~CPiCrksv~ 189 (256)
..+|+||.+.+.. ...-..|+|.||..||..||+.. +.+||+|+....
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4689999997542 23334899999999999999743 278999997765
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=8.7e-08 Score=69.93 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
+..||||++.+ ..++.|||||. |+..|+..+ .+||+||+.+...
T Consensus 25 ~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC----CCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 35799999974 34567899999 999999643 6899999998753
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.34 E-value=1.7e-07 Score=72.71 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+..||||++.| . +.++++|||+|.+.||..|+. .+.+||+|+..+.
T Consensus 27 p~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLM-T---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBC-S---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcc-c---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 3467899999965 3 345678999999999999998 5789999999886
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=1.8e-07 Score=81.71 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=41.3
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+......||||++.| . +.+++||||+|.+.||..|+..+..+||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~-~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELM-R---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBC-S---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHh-c---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345577899999964 3 33468899999999999999855566999999986
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.7e-07 Score=67.91 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=39.5
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccchhH
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 193 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~LpCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm~~ 193 (256)
......|+||++.. ..++.|||||. |...|+.. ..+||+||+.|...-.
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEE
Confidence 34567899999963 46788999999 99999984 3689999999986433
No 63
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.30 E-value=2.9e-07 Score=71.21 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccC-CccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCG-H~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
.+..||||++.| . +.++++|| |+|-+.||.+|+. .+.+||+|++.+.
T Consensus 21 ~~~~CpI~~~~m-~---dPV~~~cG~htf~r~cI~~~l~-~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLM-C---DPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBC-S---SEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCC
T ss_pred HhcCCcCccccc-c---CCeECCCCCeEECHHHHHHHHH-hCCCCCCCCCCCC
Confidence 467899999964 3 34568999 9999999999998 4789999999886
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=3e-07 Score=69.56 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=36.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-------CCCCCCC--CCcc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 187 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~-------~~~~CPi--Crks 187 (256)
....||||+++ +.....+..++|||.|...|+.+|++. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999998 443222333489999999999999862 2368999 9998
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.24 E-value=4.3e-07 Score=64.56 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=39.1
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccC--C---ccChhhHHHHhcC-CCCCCCCCCcccc
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSVI 189 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~LpCG--H---~~H~~Cl~~~~~~-~~~~CPiCrksv~ 189 (256)
|.+....|.||++.. ..+. ++||. + .||..|+.+|+.. ++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456678899999872 2333 68964 4 9999999999974 4689999997653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.18 E-value=3e-07 Score=68.35 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=38.5
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccchhHHh
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSRTW 195 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~ 195 (256)
+..|+||++.+ ..++.+||||. |...|+..| .+||+||+.+...-..|
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECB
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEE
Confidence 45799999863 35778999999 999999876 39999999998654333
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=8.2e-07 Score=67.64 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=36.8
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-----CCCCCC--CCcc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 187 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~-----~~~CPi--Crks 187 (256)
.+..||||++.| . +||+...|||+|.+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~-~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM-K--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC-S--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh-c--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456899999964 4 355543599999999999999742 479999 9866
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.01 E-value=8.6e-07 Score=83.40 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=39.4
Q ss_pred CCCCCCchhhhhhcccC-CccE---EeccCCccChhhHHHHhcCC----------CCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSL-RNTT---VMKCGHTMHCECYHEMIKRD----------KYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~-~~v~---~LpCGH~~H~~Cl~~~~~~~----------~~~CPiCrksv~ 189 (256)
....+|+||++.+.++. .+.+ .++|||.||..|+.+|++.. ..+||+||+.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35678999999865522 2222 35899999999999999731 157999999876
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.92 E-value=6.6e-06 Score=70.50 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+..||||++.| . +.+++||||+|-+.||..|+.....+||+|+..+.
T Consensus 104 p~~f~CPI~~elm-~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELM-R---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBC-S---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccC-C---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3456899999965 3 24456999999999999999753447999999886
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=4.8e-06 Score=75.50 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=41.8
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-CCCCCCC--CCcccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 189 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~-~~~~CPi--Crksv~ 189 (256)
..+..||||++.| . +||+.+.|||+|-+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f-~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-E--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-S--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-c--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4466899999974 3 58887899999999999999974 3478999 999775
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.74 E-value=4.5e-06 Score=77.94 Aligned_cols=44 Identities=25% Similarity=0.664 Sum_probs=37.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
+..||||++.+ ..++.|||||. |+..|+..| .+||+||..+...
T Consensus 295 ~~~C~IC~~~~----~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKE----VSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSB----CCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcC----CceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 56899999974 34677899999 999999887 5899999998743
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.32 E-value=4.8e-05 Score=53.92 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+...|||+++.|- ++|...++||+|-+.++.+|+.. +.+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 4568999999753 35554499999999999999984 568999998886
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.23 E-value=0.00012 Score=57.54 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=41.3
Q ss_pred CCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhH
Q 025186 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 193 (256)
Q Consensus 141 ~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~ 193 (256)
.|++|.-++. .-.+.+||.|+|...|+..|.+.+..+||+|+.+|.+.+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4788877642 2567889999999999999987677899999999997654
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.20 E-value=0.0098 Score=52.61 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=34.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-CCCCCCCCccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSV 188 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~-~~~CPiCrksv 188 (256)
-..|.||.+-+.- .++--.|+|.||..|+..|++.. +.+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4578888875432 22223499999999999999743 46999999754
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.62 E-value=0.066 Score=41.57 Aligned_cols=44 Identities=20% Similarity=0.577 Sum_probs=36.4
Q ss_pred CCCCchhhhhhcccCCccEEeccC-CccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCG-H~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..+|-.|+-. + -..+.|. |.+...|+..+|. .+.+||||.+.+-
T Consensus 28 ~~nCKsCWf~-~-----k~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-N-----KGLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-C-----SSEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-c-----CCeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4688899853 2 2467896 9999999999998 5789999999986
No 76
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=89.95 E-value=0.11 Score=42.35 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=30.5
Q ss_pred CeeEEEccCCCCccee-------------eeeEe------eecCCCCCCccccccCCC
Q 025186 214 KKVWILCNDCNDTTEV-------------YFHII------GQKCSHCKSYNTRSIAPP 252 (256)
Q Consensus 214 ~~v~I~CnDC~~~s~~-------------~fH~l------g~kC~~C~SyNT~~~~~~ 252 (256)
..+...|++||..... .+|++ ..+||.|||.+...+++.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~ 124 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGR 124 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESS
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCC
Confidence 3457899999987643 56776 689999999999887653
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.20 E-value=0.15 Score=38.12 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCchhhhhhcccCCccEE-eccCCccChhhHHH-Hh
Q 025186 139 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHE-MI 174 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~-~~ 174 (256)
+..|+||++..+. .++.. |.|||+|...|+.. |.
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 4679999985443 34444 99999999999998 53
No 78
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.02 E-value=0.47 Score=38.99 Aligned_cols=66 Identities=17% Similarity=0.455 Sum_probs=43.1
Q ss_pred ecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh----------cCCCCCCCCCCcccc-ch----hHHhHH
Q 025186 134 IENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSKSVI-DM----SRTWKR 197 (256)
Q Consensus 134 ~e~~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~----------~~~~~~CPiCrksv~-dm----~~~~~~ 197 (256)
.+...+..|.||.+. . .+.. =.|--.||..|+..-+ ..+...||+|.-.-. .+ +++++.
T Consensus 58 d~Dg~~d~C~vC~~G----G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~ 132 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFEN 132 (142)
T ss_dssp CTTSCBCSCSSSCCC----S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeecccCCC----C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHH
Confidence 456778899999974 1 2222 2688999999999654 246789999995432 32 234555
Q ss_pred HHHHHHh
Q 025186 198 IDEEIEA 204 (256)
Q Consensus 198 lD~~i~~ 204 (256)
||+.+++
T Consensus 133 ~~~~~~~ 139 (142)
T 2lbm_A 133 LEQLLQQ 139 (142)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 5555443
No 79
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.89 E-value=0.2 Score=38.92 Aligned_cols=75 Identities=25% Similarity=0.554 Sum_probs=44.1
Q ss_pred CCccceeecCccCcccccc-c-----------cCcceeecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh
Q 025186 108 GGRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI 174 (256)
Q Consensus 108 G~~~~ffHC~~C~~C~s~~-l-----------~~~H~C~e~~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~ 174 (256)
|.+++...|+.|+.-|-.+ | ..+=.|.+= ..|.||.+.-.+. ..+.. -.|...||..|++.-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCc-cceEEcCCCCCeeecccCCCCC
Confidence 4467899999997655332 1 122223321 1588887631111 12222 2688999999997655
Q ss_pred c---CCCCCCCCCCc
Q 025186 175 K---RDKYCCPICSK 186 (256)
Q Consensus 175 ~---~~~~~CPiCrk 186 (256)
. .+...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 4 24678999975
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.47 E-value=0.2 Score=38.66 Aligned_cols=81 Identities=21% Similarity=0.603 Sum_probs=46.2
Q ss_pred CCCCccccCCc-cceeecCccCcc-----cccccc----CcceeecCCCCCCCchhhhhhcccCCccEEe---ccCCccC
Q 025186 100 DDCGICRIGGR-ENYFHCKRCGSC-----YSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVM---KCGHTMH 166 (256)
Q Consensus 100 ~~CgiCRvG~~-~~ffHC~~C~~C-----~s~~l~----~~H~C~e~~~~~~CPICle~lf~s~~~v~~L---pCGH~~H 166 (256)
+.|.||..||. ++...|+.|+.- +.+.+. +.=.|.+= ..|.||.+. . ++..+| .|.-.||
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~---~~~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-G---EDSKMLVCDTCDKGYH 80 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-S---CCTTEEECSSSCCEEE
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-C---CCCCeeECCCCCcHHh
Confidence 35677777663 567888888754 333321 11112110 146677764 1 122233 6789999
Q ss_pred hhhHHHHhc---CCCCCCCCCCcc
Q 025186 167 CECYHEMIK---RDKYCCPICSKS 187 (256)
Q Consensus 167 ~~Cl~~~~~---~~~~~CPiCrks 187 (256)
..|++.-+. .+...||.|...
T Consensus 81 ~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 81 TFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp GGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred HHhcCCccccCCCCCcCCcCCcCc
Confidence 999986443 245678877543
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=84.28 E-value=0.36 Score=37.83 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=28.9
Q ss_pred CeeEEEccCCCCcceeeeeEeee-cCCCCCCccccccCCC
Q 025186 214 KKVWILCNDCNDTTEVYFHIIGQ-KCSHCKSYNTRSIAPP 252 (256)
Q Consensus 214 ~~v~I~CnDC~~~s~~~fH~lg~-kC~~C~SyNT~~~~~~ 252 (256)
..+...|.+||......-. .. +||.|+|.+++.+++.
T Consensus 70 ~p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNAL--DYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp ECCEEECSSSSCEECSCCS--TTCCCSSSSSCCCEEEESS
T ss_pred ccceEEcCCCCCEEeCCCC--CCCcCccccCCCcEEecCC
Confidence 3467899999988765432 45 8999999999988764
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.88 E-value=0.18 Score=39.47 Aligned_cols=85 Identities=21% Similarity=0.533 Sum_probs=48.9
Q ss_pred CCCCccccCC--------ccceeecCccCcc-----ccccc-------cCcceeecCCCCCCCchhhhhhcccCCccEE-
Q 025186 100 DDCGICRIGG--------RENYFHCKRCGSC-----YSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV- 158 (256)
Q Consensus 100 ~~CgiCRvG~--------~~~ffHC~~C~~C-----~s~~l-------~~~H~C~e~~~~~~CPICle~lf~s~~~v~~- 158 (256)
+.|+||..|+ +++...|+.|+.- +...+ ...=.|.+= ..|.||...- +. ..+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~-~~ll~C 76 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-ND-DQLLFC 76 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TT-TTEEEC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CC-CceEEc
Confidence 3566665543 4688999999854 43321 112223321 2577887642 11 12222
Q ss_pred eccCCccChhhHHHHhc---CCCCCCCCCCcccc
Q 025186 159 MKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 189 (256)
Q Consensus 159 LpCGH~~H~~Cl~~~~~---~~~~~CPiCrksv~ 189 (256)
-.|...||..|+..=|. .+...||.|...+.
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 26889999999985443 24577888865544
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.28 E-value=0.37 Score=36.21 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=42.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeE
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVW 217 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~ 217 (256)
|+..||+|..+|.-... +.....|-.++.. ...||-|++++.-..+ =--++
T Consensus 1 M~~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~--~afCPeCgq~Le~lkA-------------------CGA~~ 51 (81)
T 2jrp_A 1 MEITCPVCHHALERNGD--------TAHCETCAKDFSL--QALCPDCRQPLQVLKA-------------------CGAVD 51 (81)
T ss_dssp CCCCCSSSCSCCEECSS--------EEECTTTCCEEEE--EEECSSSCSCCCEEEE-------------------TTEEE
T ss_pred CCCCCCCCCCccccCCC--------ceECccccccCCC--cccCcchhhHHHHHHh-------------------cCCcC
Confidence 45789999988754322 2334455555544 3489999988864211 01358
Q ss_pred EEccCCCC---cceeeeeEe
Q 025186 218 ILCNDCND---TTEVYFHII 234 (256)
Q Consensus 218 I~CnDC~~---~s~~~fH~l 234 (256)
++||.|+. |+.|.|.+.
T Consensus 52 yFC~~C~~LiSkkrv~f~~~ 71 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVNFVIS 71 (81)
T ss_dssp ECCTTTTCCCCTTSSEEEEC
T ss_pred eeeccCCCEeecceEEEEec
Confidence 99999994 667777655
No 84
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=75.08 E-value=0.71 Score=35.57 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=26.6
Q ss_pred CCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc-------CCCCCCCCCCc
Q 025186 140 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK-------RDKYCCPICSK 186 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~-------~~~~~CPiCrk 186 (256)
..|+.|.+. .+....++. --|...+|..|+....+ ...+.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 356666554 222122222 36899999999875432 02488999974
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.76 E-value=0.41 Score=37.26 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=44.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeE
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVW 217 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~ 217 (256)
|+..||+|..+|--.. |++....|-..+.. ...||-|.+++.-+.+ =--|+
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~~--~a~CPdC~q~LevLkA-------------------CGAvd 81 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEM--KALCPDCHQPLQVLKA-------------------CGAVD 81 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCEEEE--EEECTTTCSBCEEEEE-------------------TTEEE
T ss_pred ccccCccCCCcceecC--------CEEECccccchhhc--cccCcchhhHHHHHHH-------------------hcCcc
Confidence 6789999998864321 33335566666654 4689999988875432 11378
Q ss_pred EEccCCC---CcceeeeeE
Q 025186 218 ILCNDCN---DTTEVYFHI 233 (256)
Q Consensus 218 I~CnDC~---~~s~~~fH~ 233 (256)
++||.|. +|+.|.|.+
T Consensus 82 YFC~~chgLiSKkRV~F~~ 100 (101)
T 2jne_A 82 YFCQHGHGLISKKRVEFVL 100 (101)
T ss_dssp EEETTTTEEECTTTSEEEE
T ss_pred hhhccCCceeecceEEEEe
Confidence 9999998 466676653
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.80 E-value=6.3 Score=30.17 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=41.8
Q ss_pred ecCCCCCCCchhhhhhcccCCccEE---eccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 134 IENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 134 ~e~~~~~~CPICle~lf~s~~~v~~---LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
+.......|-||.|++-...+.-.+ .-|+=.+.+.||+.-.+..+..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3445567999999996433332222 3689999999999998888999999997654
No 87
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=56.95 E-value=7.2 Score=27.56 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhcC---CCCCCCCCCcc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKS 187 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~~---~~~~CPiCrks 187 (256)
+....|.||.+. . .+.. -.|...||..|++..|.. +...||.|...
T Consensus 10 ~~~~~C~vC~~~----~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 344569999753 2 2222 268899999999877653 46789999743
No 88
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.56 E-value=1.1 Score=31.10 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc----CCCCCCCCCCcc
Q 025186 138 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK----RDKYCCPICSKS 187 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~----~~~~~CPiCrks 187 (256)
....||||.....+. ...+. -.|.-.||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 346799998763222 22222 36889999999864322 146889988653
No 89
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.85 E-value=2.5 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=16.4
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhH
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 170 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl 170 (256)
|...||.|....+.. +.+. .=|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345677777665443 2222 22677777764
No 90
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=51.74 E-value=4.1 Score=34.49 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=32.8
Q ss_pred CCCchhhhhhcccCCccEEe---ccCCccChhhHHHH------hc----CCCCCCCCCCccccc
Q 025186 140 HHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEM------IK----RDKYCCPICSKSVID 190 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~L---pCGH~~H~~Cl~~~------~~----~~~~~CPiCrksv~d 190 (256)
..||||....-++......+ .|...||..|..-- +. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 46999987643332112233 57899999998431 11 126999999987664
No 91
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.06 E-value=6.4 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....|+.|.+.+......+.. =|..+|..|| +|-.|++++.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC---------eECCCCCCCCC
Confidence 4467899999987643222223 3778887765 68889988875
No 92
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=50.04 E-value=4.9 Score=27.95 Aligned_cols=42 Identities=19% Similarity=0.471 Sum_probs=28.5
Q ss_pred CCCCCchhhhhhcc---cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~---s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
....|+.|.+.+.. ....+..+ |..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC---------BCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCcccC---------EehhcCCCCCC
Confidence 34679999988764 22333333 778887764 78889988863
No 93
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=49.10 E-value=16 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=11.1
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..|.|++|.+++...+.
T Consensus 3 ~~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYY 19 (57)
T ss_dssp --CBCTTTCCBCSCHHH
T ss_pred CCccCCCCcchhCChHH
Confidence 35788888888875443
No 94
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.56 E-value=7.1 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=27.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...|+.|.+.+......+.. =|..+|..|| +|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC---------cccccCCcCC
Confidence 46788898877653222333 3788888765 6888998885
No 95
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.21 E-value=3.5 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhcC---CCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~~---~~~~CPiCrksv~ 189 (256)
...|+||...- + ....+. =.|.-.||..|+..-+.. ..+.||.|...+.
T Consensus 18 ~~~C~~C~~~~-~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPD-D-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCC-S-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCC-C-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34699998752 2 112222 268899999999764432 4688999986553
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.14 E-value=8.8 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.594 Sum_probs=27.9
Q ss_pred CCchhhhhhcccCCccEE-eccCCccChhhHHHHhc---CCCCCCCCCCcc
Q 025186 141 HCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKS 187 (256)
Q Consensus 141 ~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~---~~~~~CPiCrks 187 (256)
.|.||... -+. ..+.. -.|.-.||..|++.=+. .+...||.|..+
T Consensus 2 ~C~vC~~~-~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 46777753 111 12222 26889999999975333 246789999764
No 97
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.84 E-value=6 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.551 Sum_probs=27.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+......+. .=|..+|..|| +|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECccccccccC---------chhhCCCccCC
Confidence 4678999988754322222 23778887765 67789888864
No 98
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=45.10 E-value=15 Score=25.12 Aligned_cols=27 Identities=26% Similarity=0.732 Sum_probs=13.1
Q ss_pred CcccCCCCCc-cccCCccceeecCccCc
Q 025186 95 GQFHCDDCGI-CRIGGRENYFHCKRCGS 121 (256)
Q Consensus 95 ~~yHC~~Cgi-CRvG~~~~ffHC~~C~~ 121 (256)
...-||.||- --+....+.++|.+|+.
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCC
Confidence 3455555553 22223345666666654
No 99
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.20 E-value=13 Score=25.16 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=15.7
Q ss_pred cceeeCCcc-ccccCCC--CCCcccCCCCCc
Q 025186 77 MGEYFCDIC-KFYDDDI--EKGQFHCDDCGI 104 (256)
Q Consensus 77 f~~y~C~~C-~l~dd~~--~k~~yHC~~Cgi 104 (256)
|+.|-|..| +-|++++ --+--+|+.||.
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 456777777 4555543 236678998886
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=44.12 E-value=19 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCCCCchhhhhhcccCCccEEec---cCCccChhhHHHH
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM 173 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~Lp---CGH~~H~~Cl~~~ 173 (256)
..+..|+||-- |++. ..+| ||=.||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 46788999974 4432 3455 6999999999997
No 101
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=43.36 E-value=5.3 Score=32.81 Aligned_cols=28 Identities=29% Similarity=0.818 Sum_probs=18.4
Q ss_pred eeCCccccccCCCCCCcccCCCCCcccc
Q 025186 80 YFCDICKFYDDDIEKGQFHCDDCGICRI 107 (256)
Q Consensus 80 y~C~~C~l~dd~~~k~~yHC~~CgiCRv 107 (256)
|-|+.|.+=--...++-|||+.||+|--
T Consensus 99 yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 99 YHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4444444332234688999999999954
No 102
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=43.08 E-value=6.5 Score=29.30 Aligned_cols=40 Identities=28% Similarity=0.637 Sum_probs=27.2
Q ss_pred cchhhhhh------hhcccccCcccceeeCCccccccCCCCCCcccCCCCCccccCC
Q 025186 59 VRQDVKQV------AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 109 (256)
Q Consensus 59 ~r~~v~~v------~~~C~~Cg~~f~~y~C~~C~l~dd~~~k~~yHC~~CgiCRvG~ 109 (256)
.|+.|++| .-.|.+||... +| ++...+++|+.||-=-.||
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred HHHHHHHHHHhccccCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 46666666 44577777643 22 2456899999999887776
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.99 E-value=18 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=35.9
Q ss_pred eecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh----------cCCCCCCCCCCcccc
Q 025186 133 CIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSKSVI 189 (256)
Q Consensus 133 C~e~~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~----------~~~~~~CPiCrksv~ 189 (256)
=.+...+..|.||.+. -.+.. =.|-..||..|+...+ ......|++|+-+-.
T Consensus 51 ~d~Dg~~~~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp BCTTSCBSSCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred cCCCCCCCcCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3456778889999974 11111 1578999999999642 235689999976544
No 104
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=42.71 E-value=14 Score=23.06 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=8.6
Q ss_pred CCCCCCCccccch
Q 025186 179 YCCPICSKSVIDM 191 (256)
Q Consensus 179 ~~CPiCrksv~dm 191 (256)
|.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 5677777776644
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.49 E-value=16 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=19.9
Q ss_pred eccCCccChhhHHH------HhcCCCCCCCCCC
Q 025186 159 MKCGHTMHCECYHE------MIKRDKYCCPICS 185 (256)
Q Consensus 159 LpCGH~~H~~Cl~~------~~~~~~~~CPiCr 185 (256)
-.|+..||..|+.. .+......||-|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 36899999999952 2334577888886
No 106
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.32 E-value=11 Score=26.00 Aligned_cols=48 Identities=23% Similarity=0.611 Sum_probs=32.3
Q ss_pred cCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc---CCCCCCCCCCcc
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKS 187 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~---~~~~~CPiCrks 187 (256)
+...+..|.||.+. ..+.. -.|--.||..|+..-+. .+...||.|.+.
T Consensus 7 ~~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC-----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34456789999863 12222 26778999999987443 357889999753
No 107
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.53 E-value=5.9 Score=27.58 Aligned_cols=39 Identities=26% Similarity=0.643 Sum_probs=27.0
Q ss_pred CCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 025186 141 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 141 ~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
.|+.|.+.+... +.+..+ |..+|..|| +|..|+++|.+.
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~CF---------~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPCL---------KCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTTC---------BCTTTCCBCCTT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCCC---------CccccCccCCCC
Confidence 478888876543 234444 888888764 788999988753
No 108
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.49 E-value=12 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=28.3
Q ss_pred CCCCchhhhhhcc--cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~--s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+.. +... +..=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY--ISFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC--EECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcce--EEECCcccCcccC---------EeccCCCcCCC
Confidence 4678999988764 2222 2234788998765 78889988863
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.21 E-value=9.6 Score=28.90 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=30.5
Q ss_pred CCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc---CCCCCCCCCC
Q 025186 137 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICS 185 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~---~~~~~CPiCr 185 (256)
..+..|.||.+.- ...+.+. -.|+..||..|+...+. .....||.|.
T Consensus 5 ~~~~~C~~C~~~g--~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCC--CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCC--CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899998741 1112222 37899999999987654 2456677665
No 110
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=38.28 E-value=3 Score=34.55 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=42.3
Q ss_pred CCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeEEE
Q 025186 140 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWIL 219 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~ 219 (256)
..|+.|.+.+... +.+.. =|..+|..| ++|-.|+++|.+- .++ .....++
T Consensus 116 ~~C~~C~~~I~~~-~~v~a--~~~~~H~~C---------F~C~~C~~~L~~~-~~~-----------------~~~g~~y 165 (192)
T 1b8t_A 116 DGCPRCGQAVYAA-EKVIG--AGKSWHKSC---------FRCAKCGKSLEST-TLA-----------------DKDGEIY 165 (192)
T ss_dssp EECTTTSCEECSS-SCEEE--TTEEECTTT---------CBCTTTCCBCCSS-SEE-----------------EETTEEE
T ss_pred CcCCCCCCEecCc-EEEec--CCCccchhc---------CCccccCCCCCCC-ccc-----------------ccCCEEe
Confidence 4599999987653 33433 377888776 4788999988642 121 1123577
Q ss_pred ccCCCCcceeeeeEeeecCCCCC
Q 025186 220 CNDCNDTTEVYFHIIGQKCSHCK 242 (256)
Q Consensus 220 CnDC~~~s~~~fH~lg~kC~~C~ 242 (256)
|.+|-.+ .++-||..|+
T Consensus 166 C~~cy~~------~f~~kc~~C~ 182 (192)
T 1b8t_A 166 CKGCYAK------NFGPKGFGFG 182 (192)
T ss_dssp EHHHHHH------HTCCCCCCCC
T ss_pred CHHHHHH------hcCCcCCCCC
Confidence 8777643 2366787776
No 111
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.23 E-value=16 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=11.5
Q ss_pred CCCCCCCCccccch
Q 025186 178 KYCCPICSKSVIDM 191 (256)
Q Consensus 178 ~~~CPiCrksv~dm 191 (256)
.+.||+|.+.+.+-
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 47899999999854
No 112
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.91 E-value=7.6 Score=26.47 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=27.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+..... .+..=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR--KLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC--EECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc--EEEECccccCcccC---------eECCCCCcCCC
Confidence 4578888888654322 23334788887765 68889988764
No 113
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.88 E-value=10 Score=22.82 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.2
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999999988654
No 114
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.62 E-value=11 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=26.6
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--PFMVA--GEFKYHPECF---------ACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS--CCBCC--TTCCBCTTSC---------BCTTTCCBCCT
T ss_pred CCcCccCCCCcCc--eEEEE--CCceeccccC---------CccCCCCccCC
Confidence 3468899988762 23333 3778887654 78889988864
No 115
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.98 E-value=12 Score=26.18 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=26.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC---------eecCCCCccCC
Confidence 45788999887632222222 3778887764 68889988863
No 116
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.21 E-value=9.2 Score=26.51 Aligned_cols=41 Identities=27% Similarity=0.613 Sum_probs=28.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
....|+.|.+.+... +.+. .=|..+|..| ++|..|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA-EKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTT-TEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECC-eEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 346799999987643 3333 3477888766 478899999874
No 117
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.08 E-value=12 Score=25.43 Aligned_cols=41 Identities=20% Similarity=0.527 Sum_probs=27.2
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC---------cccccCCccCC
Confidence 35788898887653222222 3678887665 68889988764
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.84 E-value=14 Score=26.14 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=29.4
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....|+.|.+.+... +.+..+ |..+|..|| +|-.|++.|.+
T Consensus 13 ~~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF---------~C~~C~~~L~~ 54 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF---------KCQTCSVILTG 54 (80)
T ss_dssp SSCSCCTTTCCCCSSS-CCEEET--TEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCcCcCCeeCCC-eEEEEC--CcccccccC---------CcCcCCCCcCC
Confidence 3456899999987643 334443 778888764 78889988863
No 119
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.48 E-value=15 Score=33.52 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=32.4
Q ss_pred CCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeecCCCCCCc
Q 025186 178 KYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSY 244 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~Sy 244 (256)
...||+|+..-.- +.+ + .. ....+.+ ...|+-|+ ..+|+.-.||++||+-
T Consensus 182 ~~~CPvCGs~P~~-s~l-~-~~---------g~~~G~R-~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMA-GMI-R-QG---------GKETGLR-YLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEE-EEE-E-C-------------CCEE-EEEETTTC----CEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCce-eEE-e-ec---------CCCCCcE-EEEeCCCC----CEEeecCcCCcCCCCC
Confidence 4689999976541 110 0 00 0122333 78999999 6788888999999985
No 120
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=35.26 E-value=27 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.2
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..+.|++|.+.+.....
T Consensus 28 ~~~~C~~C~~~f~~~~~ 44 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSD 44 (82)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeeCCcCChhhCCHHH
Confidence 45888888888875443
No 121
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.09 E-value=14 Score=25.59 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=27.8
Q ss_pred CCCCchhhhhhcc--cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~--s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...|+.|.+.+.. +.+.+ ..=|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~--~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI--CFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE--EETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE--EECCcccCcccC---------ChhhCCCcCC
Confidence 4578899988764 22223 334778888775 7889999886
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.76 E-value=14 Score=26.86 Aligned_cols=64 Identities=22% Similarity=0.622 Sum_probs=37.5
Q ss_pred ccceeecCccCccccccccCcceeecCCCCCCCchhhhhhcccCCccEEe--ccCCccChhhHHHHhc---CC-CCCCCC
Q 025186 110 RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIK---RD-KYCCPI 183 (256)
Q Consensus 110 ~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~Cl~~~~~---~~-~~~CPi 183 (256)
|.++..|+.|.. ...=.|.+ ..|.||... +. ....++ .|.-.||..|++.=|. .+ ...||.
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~~----c~C~vC~~~--~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCHS----CSCRVCGGK--HE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCSS----SSCSSSCCC--CC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred ccCCccChhhcC------CCCeECCC----CCCcCcCCc--CC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcC
Confidence 456777776654 12334432 368888853 11 122222 6789999999985433 23 567888
Q ss_pred CCc
Q 025186 184 CSK 186 (256)
Q Consensus 184 Crk 186 (256)
|..
T Consensus 74 C~~ 76 (77)
T 2e6s_A 74 CKT 76 (77)
T ss_dssp TCC
T ss_pred ccC
Confidence 863
No 123
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=34.47 E-value=26 Score=30.23 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=48.3
Q ss_pred ccCCccceeecCccCccccccccCcceeecCC---CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCC----
Q 025186 106 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 178 (256)
Q Consensus 106 RvG~~~~ffHC~~C~~C~s~~l~~~H~C~e~~---~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~---- 178 (256)
+.|++.....|.+|+.=-+.+.+...+=..+. ....|.-|.-.+ ....+. ..=++++++.+.
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGIT---------~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKLS---------STEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCCC---------HHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCCC---------HHHHHHHHHHcccCCC
Confidence 78989999999999998777766554444334 667899997653 111111 112445555455
Q ss_pred -CCCCCCCcccc
Q 025186 179 -YCCPICSKSVI 189 (256)
Q Consensus 179 -~~CPiCrksv~ 189 (256)
.+||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 78999998776
No 124
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.37 E-value=11 Score=26.71 Aligned_cols=42 Identities=24% Similarity=0.573 Sum_probs=29.0
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....|+.|.+.+... +.+. .=|..+|..|| +|-.|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF---------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC---------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC---------EEcCCCCCcCC
Confidence 4456799999887543 2333 33778888774 78889988874
No 125
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=33.34 E-value=13 Score=25.53 Aligned_cols=49 Identities=16% Similarity=0.475 Sum_probs=31.4
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhc---CCCCCCCCCCccc
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSV 188 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~---~~~~~CPiCrksv 188 (256)
...+..|.||.+. .+-+.--.|.-.||..|+..-+. .+...||.|....
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3446678888752 11111125789999999985443 2467899997654
No 126
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.70 E-value=18 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=22.7
Q ss_pred hcCeeEEEccCCCCcceeeeeEeeecCCCCC
Q 025186 212 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 242 (256)
Q Consensus 212 ~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~ 242 (256)
+..+..|+|.-||.+ .||+--..|..||
T Consensus 12 r~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 12 KNTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred cCCCccccccccCCh---hhhcccccccccc
Confidence 345778999999975 5787778899998
No 127
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.23 E-value=22 Score=22.35 Aligned_cols=15 Identities=13% Similarity=0.762 Sum_probs=9.9
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+.+...+
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (60)
T 2adr_A 2 SFVCEVCTRAFARQE 16 (60)
T ss_dssp CBCCTTTCCCBSCHH
T ss_pred cCcCCCCccccCCHH
Confidence 367777777776543
No 128
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.93 E-value=27 Score=17.79 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=11.2
Q ss_pred CCCCCCCccccchh
Q 025186 179 YCCPICSKSVIDMS 192 (256)
Q Consensus 179 ~~CPiCrksv~dm~ 192 (256)
|.|++|.+++...+
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 68999999987543
No 129
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.36 E-value=27 Score=17.97 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 4789999999886543
No 130
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.28 E-value=13 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...|+.|.+.+..+...+..+ |..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--NRFWHDTCF---------RCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--TEEEETTTC---------CCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEEC--ccChhhcCC---------cccccCCCCC
Confidence 456777777764322333333 566666554 5667777764
No 131
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.85 E-value=38 Score=22.34 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.0
Q ss_pred CCCCCCCCCccccchh
Q 025186 177 DKYCCPICSKSVIDMS 192 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~ 192 (256)
..|.|++|.+.+...+
T Consensus 16 ~~~~C~~C~k~f~~~~ 31 (74)
T 2lce_A 16 KPYKCDRCQASFRYKG 31 (74)
T ss_dssp CSBCCTTSSCCBSCHH
T ss_pred CCeECCCCCceeCCHH
Confidence 3577888888777543
No 132
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=30.72 E-value=20 Score=27.45 Aligned_cols=31 Identities=39% Similarity=0.831 Sum_probs=25.2
Q ss_pred hcCeeEEEccCCCCcceeeeeEeeecCCCCC-------Ccc
Q 025186 212 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 245 (256)
Q Consensus 212 ~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyN 245 (256)
+..+..|+|.-||. ..||+--..|..|| +||
T Consensus 11 r~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 3iz5_l 11 RRNKTHTLCVRCGR---RSFHLQKSTCSSCGYPAARIRKYN 48 (94)
T ss_dssp CCCCSEEECTTTCS---EEEEGGGTEETTTCSSCSSCCCCS
T ss_pred cCCCccceecCcCc---hhhhcccccccccCCchhhccccc
Confidence 34567899999997 45788788999999 777
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.53 E-value=19 Score=25.36 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
.....|+-|.+.+.+ +.+. .=|..+|..| ++|-.|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIIDE--QPLI--FKNDPYHPDH---------FNCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCCS--CCCC--CSSSCCCTTT---------SBCSSSCCBCCT
T ss_pred cCCCCCccCCCEecc--eEEE--ECcceeCCCC---------CEeCCCCCccCC
Confidence 345679999998763 2333 3378888776 478889998874
No 134
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=30.32 E-value=18 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=23.1
Q ss_pred eEEEccCCCCcceeeeeEeeecCCCCCCccccccC
Q 025186 216 VWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 250 (256)
Q Consensus 216 v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~ 250 (256)
..+.|..||+. ...| +-|++||.|+-+++-
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V~ 58 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKVL 58 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEECC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEee
Confidence 46889999973 4455 459999999998864
No 135
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.07 E-value=28 Score=26.22 Aligned_cols=65 Identities=31% Similarity=0.541 Sum_probs=41.8
Q ss_pred CCCCCCchhhhhhcccCCccEEecc----CCccChhhHHHHhcC----CCCCCCCCCcccc-chhHHhHHHHHHHHhc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKC----GHTMHCECYHEMIKR----DKYCCPICSKSVI-DMSRTWKRIDEEIEAT 205 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpC----GH~~H~~Cl~~~~~~----~~~~CPiCrksv~-dm~~~~~~lD~~i~~~ 205 (256)
+.-..|.+|.|.|-+ .....| +|-|.-.|-++.++. ...-||.=.|-.+ .-..-|.-+..||++.
T Consensus 13 ~a~l~CtlC~erLEd----tHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFmqgEIatI 86 (93)
T 2cs3_A 13 SGPLCCTICHERLED----THFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATI 86 (93)
T ss_dssp CCSCCCSSSCSCCSS----TTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCCHHHHHHH
T ss_pred CCeeEeecchhhhcc----CceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHHhhHHHHH
Confidence 445789999999754 345556 699999999999872 1233444333332 2223477777777764
No 136
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.68 E-value=31 Score=17.55 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.2
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.|.|+.|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 4789999999875443
No 137
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=29.55 E-value=20 Score=27.48 Aligned_cols=30 Identities=30% Similarity=0.827 Sum_probs=25.3
Q ss_pred cCeeEEEccCCCCcceeeeeEeeecCCCCC-------Ccc
Q 025186 213 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 245 (256)
Q Consensus 213 ~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyN 245 (256)
..+..|+|.-||. ..||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 12 HQKTHTLCRRCGK---ATYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCEEECTTTCS---EEEETTTTEESSSCGGGSSCCCCT
T ss_pred CCCccceecCcCc---hhhhhccccccccCCcHHHhcCcc
Confidence 3467899999997 45788888999999 899
No 138
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.40 E-value=19 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTTC---------BCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCcC---------ChhhCCCCCCC
Confidence 3578888888754 33333 3677887664 78889998874
No 139
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.39 E-value=17 Score=30.54 Aligned_cols=46 Identities=17% Similarity=0.535 Sum_probs=32.0
Q ss_pred CCCCCCCchhhhhhcccCCccEEe---ccCCccChhhHHHHhc---CCCCCCCCCCccc
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEMIK---RDKYCCPICSKSV 188 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~L---pCGH~~H~~Cl~~~~~---~~~~~CPiCrksv 188 (256)
...+..|.||... + . +| .|.-.||..|+..-+. .+...||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g-~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----G-D--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----E-E--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----C-c--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456678898753 1 1 33 5789999999976654 2468899998753
No 140
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.29 E-value=28 Score=32.64 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=33.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc--cChhhHHHHhc-CCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~--~H~~Cl~~~~~-~~~~~CPiCrksv~ 189 (256)
...|||=+..|. .|++-..|.|. |=..=|.++.. ....+||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 457998777642 58888999987 55444444432 35799999999884
No 141
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=29.29 E-value=33 Score=17.61 Aligned_cols=15 Identities=13% Similarity=0.762 Sum_probs=11.9
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+++...+
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 2 SFVCEVCTRAFARQE 16 (29)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 478999999988543
No 142
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.92 E-value=26 Score=23.25 Aligned_cols=28 Identities=36% Similarity=1.039 Sum_probs=17.1
Q ss_pred cceeeCCcccc-ccC---CC-----CCCcccCCCCCc
Q 025186 77 MGEYFCDICKF-YDD---DI-----EKGQFHCDDCGI 104 (256)
Q Consensus 77 f~~y~C~~C~l-~dd---~~-----~k~~yHC~~Cgi 104 (256)
|.+|-|.+|-+ ||. |+ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 78899999966 452 21 112367777663
No 143
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.74 E-value=75 Score=21.28 Aligned_cols=24 Identities=33% Similarity=0.937 Sum_probs=15.7
Q ss_pred CCCCccccCCccceeecCccCccccc
Q 025186 100 DDCGICRIGGRENYFHCKRCGSCYST 125 (256)
Q Consensus 100 ~~CgiCRvG~~~~ffHC~~C~~C~s~ 125 (256)
+.|.+|+.|| +..-|+.|..-+-.
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH~ 29 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYHL 29 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEECG
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEEC
Confidence 4577777764 57778877755433
No 144
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.67 E-value=27 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=6.4
Q ss_pred cceeecCccCccc
Q 025186 111 ENYFHCKRCGSCY 123 (256)
Q Consensus 111 ~~ffHC~~C~~C~ 123 (256)
+.-|-|..||.-.
T Consensus 37 ~k~~~C~~C~k~f 49 (62)
T 1vd4_A 37 TGTFRCTFCHTEV 49 (62)
T ss_dssp TTEEBCSSSCCBC
T ss_pred CCCEECCCCCCcc
Confidence 3445555555443
No 145
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=28.61 E-value=7.2 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCchhhhhhcccCCccEE-e-ccCCccChhhHHHHh---cCCCCCCCCCC
Q 025186 141 HCPICYEYLFDSLRNTTV-M-KCGHTMHCECYHEMI---KRDKYCCPICS 185 (256)
Q Consensus 141 ~CPICle~lf~s~~~v~~-L-pCGH~~H~~Cl~~~~---~~~~~~CPiCr 185 (256)
.|+||..+..++ ...+. - .|.-.||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~~-~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT-CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC-CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477887764322 22222 2 588899999975321 12578999885
No 146
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.59 E-value=29 Score=23.67 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=9.3
Q ss_pred cceeeCCccccc
Q 025186 77 MGEYFCDICKFY 88 (256)
Q Consensus 77 f~~y~C~~C~l~ 88 (256)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 678999999654
No 147
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=28.35 E-value=29 Score=32.38 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=34.5
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc--cChhhHHHHhc-CCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~--~H~~Cl~~~~~-~~~~~CPiCrksv~ 189 (256)
...|||=+..| ..|++-..|.|. |-..=|.++.. ....+||+|.+.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34699877654 258888999987 65555555543 35789999999985
No 148
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.23 E-value=29 Score=17.92 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=11.8
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+++...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 578999999887543
No 149
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.18 E-value=27 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=23.5
Q ss_pred eeEEEccCCCCcceeeeeEeeecCCCCCCccccccC
Q 025186 215 KVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 250 (256)
Q Consensus 215 ~v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~ 250 (256)
...+.|..||+. ...| +-|++||-|+-+++-
T Consensus 28 p~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 28 PNLTECPQCHGK--KLSH---HICPNCGYYDGRQVL 58 (60)
T ss_dssp CCCEECTTTCCE--ECTT---BCCTTTCBSSSBCSC
T ss_pred CCceECCCCCCE--eCCc---eEcCCCCcCCCEEee
Confidence 346889999975 3344 569999999998863
No 150
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.86 E-value=25 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCCCCCCCccccchhHHhHHH
Q 025186 177 DKYCCPICSKSVIDMSRTWKRI 198 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~~~~~l 198 (256)
..|.|++|.+.+...+.+.+-+
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~ 57 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHM 57 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHH
T ss_pred CCEeCCCCCCccCCHHHHHHHH
Confidence 4589999999998655444433
No 151
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.78 E-value=52 Score=21.96 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeEEEccCCCCcce
Q 025186 177 DKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTE 228 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~ 228 (256)
.-|.|++|.|++...+..-+-+- + ..+.+ ...|..|++...
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~--~--------Ht~ek-p~~C~~C~k~F~ 43 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRR--A--------HLGYR-PRSCPECGKCFR 43 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHH--H--------HHTCC-CEECTTTCCEES
T ss_pred CCccCCCCCCEeCCHHHHHHHHH--H--------hCCCc-CeECCCCCCCcC
Confidence 35788888888875443222111 1 11222 367888887553
No 152
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.69 E-value=17 Score=24.31 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=29.2
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 025186 137 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
.....|+.|.+.+.... .+ +..=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e-~~-~~~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAE-KI-VNSNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTC-EE-EEETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCc-eE-EEeCcCeeCcCCC---------cccCCCCCCCCC
Confidence 44567999998876432 22 1233677887766 688899998754
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.61 E-value=26 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=23.0
Q ss_pred eeEEEccCCCCcceeeeeEeeecCCCCCCccccc
Q 025186 215 KVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRS 248 (256)
Q Consensus 215 ~v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~ 248 (256)
..-..|.|||-+..... ...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEI-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCS-SCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccC-CCCCCCcCCCCCccCC
Confidence 44578999998751111 2346999999999764
No 154
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.40 E-value=35 Score=18.98 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.4
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..|.||+|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSBCCTTTCCCBSSHHH
T ss_pred CCccCCCCCcccCcHHH
Confidence 46899999999986443
No 155
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.93 E-value=26 Score=25.07 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=29.5
Q ss_pred CCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc----CCCCCCCCCCcccc
Q 025186 140 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK----RDKYCCPICSKSVI 189 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~----~~~~~CPiCrksv~ 189 (256)
..| ||.... +.....+. -.|.-.||..|+.--.. ...|.||.|+.+..
T Consensus 13 ~~C-~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPY-NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSC-CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCcc-CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 445 777652 21122222 36889999999953211 25799999997654
No 156
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.55 E-value=48 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.858 Sum_probs=6.9
Q ss_pred CCCCCCCCccccc
Q 025186 178 KYCCPICSKSVID 190 (256)
Q Consensus 178 ~~~CPiCrksv~d 190 (256)
.|.|++|.+++..
T Consensus 31 ~~~C~~C~k~f~~ 43 (88)
T 1llm_C 31 PFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESS
T ss_pred CccCCCCCCccCC
Confidence 3555555555543
No 157
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.53 E-value=19 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=25.6
Q ss_pred CCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 140 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 140 ~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
..|+.|.+.+......+..+ |..+|..|| +|-.|++.|.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 47 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVK--DKVYHLECF---------KCAACQKHFS 47 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCS--SCCCCTTTC---------BCTTTCCBCC
T ss_pred CcccCCCCeecCCceEEEEC--CcccccccC---------ccccCCCCCC
Confidence 36888888765432222333 788888765 6778888874
No 158
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.42 E-value=36 Score=24.42 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=3.8
Q ss_pred cCCCCCc
Q 025186 98 HCDDCGI 104 (256)
Q Consensus 98 HC~~Cgi 104 (256)
+|+.||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5555553
No 159
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.40 E-value=26 Score=23.59 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=26.7
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...|+.|.+.+.. +.+.. =|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 4578888888753 23333 3778888765 6888998886
No 160
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.09 E-value=29 Score=22.83 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=9.8
Q ss_pred CCCCCCCCCccccch
Q 025186 177 DKYCCPICSKSVIDM 191 (256)
Q Consensus 177 ~~~~CPiCrksv~dm 191 (256)
..|.|++|.+.+...
T Consensus 13 k~~~C~~C~k~f~~~ 27 (72)
T 1x6e_A 13 KPYGCVECGKAFSRS 27 (72)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCccCCCCCCccCCH
Confidence 356777777777643
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.09 E-value=21 Score=24.14 Aligned_cols=40 Identities=25% Similarity=0.706 Sum_probs=27.1
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 191 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm 191 (256)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKA--MNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEE--TTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEE--CcccccccCC---------EeCCCCCcCCCC
Confidence 3568888887653 23333 3778888765 788899888753
No 162
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=25.90 E-value=26 Score=27.88 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEccCCCCcceeeeeEeeecCCC--CCCcc
Q 025186 218 ILCNDCNDTTEVYFHIIGQKCSH--CKSYN 245 (256)
Q Consensus 218 I~CnDC~~~s~~~fH~lg~kC~~--C~SyN 245 (256)
..|.+|+...++ ||-|.|.+ |+.|.
T Consensus 35 ~~C~~C~~~~~L---wlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 35 WKCSKCDMRENL---WLNLTDGSILCGRRY 61 (129)
T ss_dssp CCCSSSSCCSSE---EEETTTCCEEECCBC
T ss_pred CcCccccCcCce---EEeccCCccccCccc
Confidence 359999988765 99999997 87764
No 163
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.84 E-value=76 Score=20.92 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=10.9
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..|.|++|.+.+...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKAS 22 (78)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred cCeECCCCCCeeCCHHH
Confidence 35677777777765433
No 164
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.64 E-value=48 Score=18.16 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.3
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..|.|++|.+++...+.
T Consensus 8 ~~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGT 24 (36)
T ss_dssp SSCBCTTTCCBCSSHHH
T ss_pred CCeecCcCCCCcCchHH
Confidence 46899999999985443
No 165
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.50 E-value=45 Score=22.47 Aligned_cols=12 Identities=33% Similarity=1.027 Sum_probs=9.6
Q ss_pred cceeeCCccccc
Q 025186 77 MGEYFCDICKFY 88 (256)
Q Consensus 77 f~~y~C~~C~l~ 88 (256)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (52)
T 1e8j_A 1 MDIYVCTVCGYE 12 (52)
T ss_dssp CCCEECSSSCCC
T ss_pred CCcEEeCCCCeE
Confidence 678999999655
No 166
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.33 E-value=32 Score=23.72 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=26.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 189 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~ 189 (256)
...|+.|.+.+.. +. +..=|..+|..|| +|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~--~~--v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ--GG--VTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS--CC--EESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC--cE--EEECCchhhhhhC---------CcccCCCcCC
Confidence 4679999988754 22 3344788888765 6888998885
No 167
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.12 E-value=35 Score=17.49 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.8
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+++...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFS 17 (27)
T ss_dssp CEECSSSSCEESSHH
T ss_pred CccCCCcChhhCCHH
Confidence 578999999987543
No 168
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=25.10 E-value=55 Score=20.81 Aligned_cols=32 Identities=25% Similarity=0.795 Sum_probs=22.6
Q ss_pred cceeecCccCcccccccc--CcceeecCCCCCCCc
Q 025186 111 ENYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 143 (256)
Q Consensus 111 ~~ffHC~~C~~C~s~~l~--~~H~C~e~~~~~~CP 143 (256)
.+.|.|.. +.|++..+. +..-|..++.+.+|+
T Consensus 10 ~~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 10 KDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TTEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 35788888 889988765 555667777777775
No 169
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.02 E-value=36 Score=17.67 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=12.2
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.|.|+.|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 4789999999875443
No 170
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=24.84 E-value=1e+02 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.552 Sum_probs=20.8
Q ss_pred ccCCCCCCcccCCCCCccccCC-ccceeecCccCccccc
Q 025186 88 YDDDIEKGQFHCDDCGICRIGG-RENYFHCKRCGSCYST 125 (256)
Q Consensus 88 ~dd~~~k~~yHC~~CgiCRvG~-~~~ffHC~~C~~C~s~ 125 (256)
-.|+....-..| .|.||+.+. ..+..-|+.|..-+-+
T Consensus 8 c~~~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 8 CKDDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp TTTCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred ccCCCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 334433333334 456666543 5678899999765543
No 171
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.50 E-value=30 Score=18.00 Aligned_cols=15 Identities=27% Similarity=0.888 Sum_probs=11.7
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+++...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLA 17 (27)
T ss_dssp TEEETTTTEEESCHH
T ss_pred CcCCCCCCcccCCHH
Confidence 578999999887543
No 172
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.35 E-value=27 Score=24.34 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 139 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 139 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
...|+.|.+.+.+ +.+. .=|..+|..|| +|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 4579999988753 3333 33778887765 67889988864
No 173
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.19 E-value=44 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.520 Sum_probs=26.7
Q ss_pred CCCCCCCCCcc-cc--chhHHhHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeE
Q 025186 177 DKYCCPICSKS-VI--DMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHI 233 (256)
Q Consensus 177 ~~~~CPiCrks-v~--dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~fH~ 233 (256)
..++||.|... .+ .|.. ......|.|.-|+...+...+.
T Consensus 22 t~F~CPfCnh~~sV~vkidk------------------~~~~g~l~C~~Cg~~~~~~i~~ 63 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDR------------------ARNTGVISCTVCLEEFQTPITY 63 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEET------------------TTTEEEEEESSSCCEEEEECCS
T ss_pred CeEcCCCCCCCCeEEEEEEc------------------cCCEEEEEcccCCCeEEeccCc
Confidence 57999999987 33 3321 2346789999999877665543
No 174
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=24.16 E-value=38 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=7.6
Q ss_pred ccceeecCccCc
Q 025186 110 RENYFHCKRCGS 121 (256)
Q Consensus 110 ~~~ffHC~~C~~ 121 (256)
..-+|+|..|+.
T Consensus 58 ~~~~Y~C~~C~f 69 (89)
T 1v5n_A 58 TIWSYHCDECDF 69 (89)
T ss_dssp CSCEEECTTTCC
T ss_pred CCcEEEcCCCCC
Confidence 345677777764
No 175
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=24.09 E-value=43 Score=20.48 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=18.6
Q ss_pred ceeecCccCcccccccc--CcceeecCCCCCCCc
Q 025186 112 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 143 (256)
Q Consensus 112 ~ffHC~~C~~C~s~~l~--~~H~C~e~~~~~~CP 143 (256)
+.|.|.. |.|++.++. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4677765 778877653 344455556555554
No 176
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.88 E-value=45 Score=18.42 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.6
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.|.|++|.+.+...+.
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 4789999999986543
No 177
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.55 E-value=38 Score=17.28 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.6
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+++...+
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 2 PLKCRECGKQFTTSG 16 (29)
T ss_dssp CEECTTTSCEESCHH
T ss_pred CccCCCCCCccCChh
Confidence 478999999887544
No 178
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.25 E-value=31 Score=17.78 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.6
Q ss_pred CCCCCCCCccccchh
Q 025186 178 KYCCPICSKSVIDMS 192 (256)
Q Consensus 178 ~~~CPiCrksv~dm~ 192 (256)
.|.|++|.+.+...+
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 1rik_A 2 KFACPECPKRFMRSD 16 (29)
T ss_dssp CEECSSSSCEESCSH
T ss_pred CccCCCCCchhCCHH
Confidence 378999999987543
No 179
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.84 E-value=44 Score=22.15 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=8.6
Q ss_pred CCCCCCCCccccch
Q 025186 178 KYCCPICSKSVIDM 191 (256)
Q Consensus 178 ~~~CPiCrksv~dm 191 (256)
.|.|++|.+.+...
T Consensus 15 ~~~C~~C~k~f~~~ 28 (77)
T 2ct1_A 15 PYECYICHARFTQS 28 (77)
T ss_dssp SEECTTTCCEESCH
T ss_pred CeECCCcCchhCCH
Confidence 46677776666643
No 180
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=22.39 E-value=22 Score=36.40 Aligned_cols=81 Identities=7% Similarity=0.151 Sum_probs=37.3
Q ss_pred chhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHHHHHHHhcCCChhhhcCeeEEEccC
Q 025186 143 PICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCND 222 (256)
Q Consensus 143 PICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnD 222 (256)
+.|+|.|-.. --.+|..-+.++..++..|-. ..||+|+.... +. .++ ...++|+ . .-.|.+
T Consensus 160 ~~~~~~~~~~--~~~i~~~~~~~~~~~~~~w~~---~~~~~c~h~~~-~~----~~~---~~~~~~~--~----~~~C~~ 220 (854)
T 3ihp_A 160 DIVRDRVTSA--VEALLSADSASRKQEVQAWDG---EVRQVSKHAFS-LK----QLD---NPARIPP--C----GWKCSK 220 (854)
T ss_dssp HHHHHHHHHH--HHHHTC-------------------CCCBCTTTTT-CC----CCS---SCCCCCS--S----CCCCSS
T ss_pred hhhHHHHHHH--HHHHHhcCCHHHHHHHHhhcC---ccCCCCcCccc-cc----ccc---ccccCCC--C----CCcCcC
Confidence 3466655433 223566789999999999953 45999987753 10 000 0112222 1 246999
Q ss_pred CCCcceeeeeEeeecCCC--CCCcc
Q 025186 223 CNDTTEVYFHIIGQKCSH--CKSYN 245 (256)
Q Consensus 223 C~~~s~~~fH~lg~kC~~--C~SyN 245 (256)
|+...++ |+-|.|++ |+.|.
T Consensus 221 c~~~~~l---w~CL~Cg~vgC~r~~ 242 (854)
T 3ihp_A 221 CDMRENL---WLNLTDGSILCGRRY 242 (854)
T ss_dssp SCCCSSE---EEETTTCCEEECCBC
T ss_pred cCCcCce---EEEecCCCccccccc
Confidence 9988766 89999986 87553
No 181
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=22.23 E-value=35 Score=26.28 Aligned_cols=31 Identities=29% Similarity=0.767 Sum_probs=24.7
Q ss_pred cCeeEEEccCCCCcceeeeeEeeecCCCCC-------Cccc
Q 025186 213 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYNT 246 (256)
Q Consensus 213 ~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyNT 246 (256)
..+..++|.-||.. .||+--..|..|| +||=
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCGYpa~k~R~ynW 49 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCGYPAKRKRKYNW 49 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTCTTTSSCCCCSS
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccCCchHhccCcch
Confidence 44678999999986 4588888899998 7773
No 182
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.09 E-value=36 Score=17.46 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.3
Q ss_pred CCCCCCCCccccchhH
Q 025186 178 KYCCPICSKSVIDMSR 193 (256)
Q Consensus 178 ~~~CPiCrksv~dm~~ 193 (256)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTS 18 (30)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5789999999875443
No 183
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=21.94 E-value=57 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=10.3
Q ss_pred CCCCCCCCCccccchh
Q 025186 177 DKYCCPICSKSVIDMS 192 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~ 192 (256)
..+.|++|.+.+...+
T Consensus 33 ~~~~C~~C~~~f~~~~ 48 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSD 48 (90)
T ss_dssp CCEECTTTCCEESCHH
T ss_pred CCccCCCCCcccCCHH
Confidence 3567777777776543
No 184
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.50 E-value=19 Score=18.46 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=10.6
Q ss_pred CCCCCCCCccccch
Q 025186 178 KYCCPICSKSVIDM 191 (256)
Q Consensus 178 ~~~CPiCrksv~dm 191 (256)
.|.|++|++++...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 37899999887743
No 185
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.82 E-value=85 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.6
Q ss_pred CCCCCCCCCccccchhH
Q 025186 177 DKYCCPICSKSVIDMSR 193 (256)
Q Consensus 177 ~~~~CPiCrksv~dm~~ 193 (256)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSH 27 (46)
T ss_dssp CSCCCSSSCCCCSSHHH
T ss_pred CCeECCCCCcccCCHHH
Confidence 46899999999986544
No 186
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.76 E-value=51 Score=23.30 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=8.3
Q ss_pred CCCcccCCCCCc
Q 025186 93 EKGQFHCDDCGI 104 (256)
Q Consensus 93 ~k~~yHC~~Cgi 104 (256)
......|+.||-
T Consensus 35 ~~~~iRC~~CG~ 46 (63)
T 3h0g_L 35 AKEVIRCRECGH 46 (63)
T ss_dssp SSSCCCCSSSCC
T ss_pred CCCceECCCCCc
Confidence 346778888873
No 187
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.44 E-value=32 Score=24.52 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=29.6
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 136 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 136 ~~~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
......|+.|.+.+.+ +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 22 ~~~~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRG--PFL--VALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCCS--CEE--EETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEecc--eEE--EECCccccccCC---------ccCCCCCCCCC
Confidence 4456789999998742 223 344888888765 78889998874
No 188
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.29 E-value=52 Score=23.51 Aligned_cols=14 Identities=29% Similarity=1.028 Sum_probs=10.9
Q ss_pred cccceeeCCccccc
Q 025186 75 VNMGEYFCDICKFY 88 (256)
Q Consensus 75 ~~f~~y~C~~C~l~ 88 (256)
..|.+|.|.+|-+.
T Consensus 3 ~~m~~y~C~vCGyi 16 (70)
T 1dx8_A 3 IDEGKYECEACGYI 16 (70)
T ss_dssp CCSSCEEETTTCCE
T ss_pred CCCceEEeCCCCEE
Confidence 35789999999655
No 189
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.20 E-value=9.6 Score=26.98 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc--CCCCCCCCCCcc
Q 025186 137 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK--RDKYCCPICSKS 187 (256)
Q Consensus 137 ~~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~Cl~~~~~--~~~~~CPiCrks 187 (256)
.....| ||.... +. ...+. -.|.-.||..|+.--.. ...|.||.|+++
T Consensus 17 ~~~~~C-iC~~~~-~~-~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPF-AG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCC-TT-CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcC-CC-CCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 445567 887652 22 22222 36899999999964321 146888888754
No 190
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=21.18 E-value=39 Score=28.60 Aligned_cols=15 Identities=13% Similarity=0.598 Sum_probs=13.2
Q ss_pred CCceeEcCcCCCeec
Q 025186 23 RRCRIRAPCCNEIFD 37 (256)
Q Consensus 23 R~cki~apcC~~~y~ 37 (256)
..+||.||.|+.+|.
T Consensus 131 ~~VKlyCP~C~DvY~ 145 (182)
T 1qf8_A 131 AMVKLYCPKCMDVYT 145 (182)
T ss_dssp CBCEEECTTTCCEEC
T ss_pred CceEEECCCccceeC
Confidence 378999999999995
No 191
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.46 E-value=21 Score=25.42 Aligned_cols=51 Identities=24% Similarity=0.510 Sum_probs=31.6
Q ss_pred cCCCCCCCchhhhhhcccCCccEEe--ccCCccChhhHHHH-hcCCCCCCCCCCc
Q 025186 135 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEM-IKRDKYCCPICSK 186 (256)
Q Consensus 135 e~~~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~Cl~~~-~~~~~~~CPiCrk 186 (256)
+......|.||.+.-.+. ....++ .|.=.||..|+..- +-.+...||.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~-~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCS-SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345577899998742122 222333 68899999999743 2234667777753
No 192
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.43 E-value=51 Score=20.97 Aligned_cols=10 Identities=50% Similarity=1.358 Sum_probs=4.9
Q ss_pred CCcccCCCCC
Q 025186 94 KGQFHCDDCG 103 (256)
Q Consensus 94 k~~yHC~~Cg 103 (256)
|+-|.|..||
T Consensus 26 ~qg~~C~~C~ 35 (50)
T 1ptq_A 26 KQGLKCEDCG 35 (50)
T ss_dssp SCEEEETTTC
T ss_pred CccCEeCCCC
Confidence 4445555444
No 193
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=42 Score=23.27 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=28.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 025186 138 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 190 (256)
Q Consensus 138 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~Cl~~~~~~~~~~CPiCrksv~d 190 (256)
....|+.|.+.+.. +. +..=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VF--VKLRDRHRHPECY---------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--SC--EECSSCEECTTTT---------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--cE--EEECcceeCcCcC---------eeCCCCCCCCC
Confidence 35689999998764 22 3334788998875 68889988863
Done!