BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025188
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
pdb|4DMB|B Chain B, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
Length = 204
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 4/161 (2%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139
++ FL L +LK R GWV RNV PES++DH YR + ++ D +++D+C+++A+
Sbjct: 17 LLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHXYRXAVXAXVIKD-DRLNKDRCVRLAL 75
Query: 140 VHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTA 199
VHD AE IVGDI P+D IPKEEK +RE EA + +LL + R KE+ ELW EYE S+A
Sbjct: 76 VHDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLR-KELYELWEEYETQSSA 134
Query: 200 EAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 238
EAK VK D+ E ILQA EYE+ + K L++F+ STAGKF
Sbjct: 135 EAKFVKQLDQCEXILQASEYEDLEHKPGRLQDFYDSTAGKF 175
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|B Chain B, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|C Chain C, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|D Chain D, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|E Chain E, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|F Chain F, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
Length = 177
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 15/170 (8%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKC 134
+I+ + L LK R GW+ + V PESIADH + + + L++AD+ ID +K
Sbjct: 4 MIEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDVEKA 63
Query: 135 IKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYE 194
+KMAIVHD+AEAI+ DI S +E + + EA+ + E EL+ EY+
Sbjct: 64 LKMAIVHDLAEAIITDIPLS---AQEFVDKDKAEALVF-------KKVFPEFYELYREYQ 113
Query: 195 ENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGK 244
E S+ EA++V+ DK +MILQA +YE K+L+EF+++ + EL K
Sbjct: 114 ECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIEEIKRLELSK 163
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|B Chain B, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|C Chain C, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|D Chain D, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|E Chain E, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|F Chain F, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
Length = 184
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 15/158 (9%)
Query: 81 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPG-----IDRDKCI 135
ID + L +LK R GW+ + V NPES+ADH YR+ + L++A+ ID +K +
Sbjct: 10 IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKAL 69
Query: 136 KMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEE 195
K+AI+HD+ EAI+ D+ P K + E +A+ + E EL+ EY +
Sbjct: 70 KIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDVL---------PEYTELFEEYSK 119
Query: 196 NSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQS 233
T E ++VK DK +MI+QA EYE K+L EF+ +
Sbjct: 120 ALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNA 157
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus
Length = 175
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIK--- 136
V+ F+ LK T R+GW+K + PES+A+H +R ++ I+A G +K K
Sbjct: 12 VVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHSFRAAIIAFILALKSGESVEKACKAAT 71
Query: 137 MAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEEN 196
A+ HD+ EA D+ I + S E +GAR +++ WME + +
Sbjct: 72 AALFHDLHEARTMDL---HKIARRYVSCDE------------EGAREEQLS--WMESKPD 114
Query: 197 STAEAKIVKDFDKAEMILQAVEYENE 222
+ V D DK E+ Q VEY +
Sbjct: 115 FSDVEVYVSDADKLELAFQGVEYSQQ 140
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600
pdb|1YNB|B Chain B, Crystal Structure Of Genomics Apc5600
pdb|1YNB|C Chain C, Crystal Structure Of Genomics Apc5600
Length = 173
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIK--- 136
V+ F+ LK T R+GW+K + PES+A+H +R ++ I+A G +K K
Sbjct: 10 VVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAAT 69
Query: 137 MAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEEN 196
A+ HD+ EA D+ I + S E +GAR +++ WME + +
Sbjct: 70 AALFHDLHEARTMDL---HKIARRYVSCDE------------EGAREEQLS--WMESKPD 112
Query: 197 STAEAKIVKDFDKAEMILQAVEYENE 222
+ V D DK E+ Q VEY +
Sbjct: 113 FSDVEVYVSDADKLELAFQGVEYSQQ 138
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
pdb|3KH1|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
Length = 200
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 83 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP--GIDRDKCIKMAIV 140
F+ +LKT R + + + E+ A+H + + ++A+ + + + ++
Sbjct: 16 FVVEIDKLKTILRQTLLT-DSSRRENDAEHSWHIATXAFLLAEYADEAVQIGRVARXLLI 74
Query: 141 HDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAE 200
HDI E GD D E+K +RER+A + LL +A E LW EYE TA+
Sbjct: 75 HDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPD-QAAEYSALWQEYEARETAD 133
Query: 201 AKIVKDFDKAEMILQAVEYE 220
A+ D+ + +L E E
Sbjct: 134 ARFADALDRLQPLLHNFETE 153
>pdb|2GZ4|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Atu1052 From Agrobacterium Tumefaciens
pdb|2GZ4|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Atu1052 From Agrobacterium Tumefaciens
pdb|2GZ4|C Chain C, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Atu1052 From Agrobacterium Tumefaciens
pdb|2GZ4|D Chain D, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Atu1052 From Agrobacterium Tumefaciens
Length = 207
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 105 NPESIADHMYRMGLMGLIMADI-----PGIDRDKCIKMAIVHDIAEAIVGD-ITP 153
N ++ DH + + LI+ I PG D+ ++MA++HD E ++GD I+P
Sbjct: 45 NGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDE-MQMALLHDAPEYVIGDMISP 98
>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3CSD|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3QRW|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3QRW|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3RI3|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3RI3|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
Length = 281
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 177 LGQGARAKEIDELWME-YEENSTAEAKIVKDFDKAEMILQ 215
LG GA A+ DELW++ E N T ++ K KA +L+
Sbjct: 114 LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE 153
>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
pdb|2RHR|A Chain A, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
Length = 277
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 177 LGQGARAKEIDELWME-YEENSTAEAKIVKDFDKAEMILQ 215
LG GA A+ DELW++ E N T ++ K KA +L+
Sbjct: 110 LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,378
Number of Sequences: 62578
Number of extensions: 232935
Number of successful extensions: 592
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 16
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)