BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025188
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1
Length = 200
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 115/163 (70%), Gaps = 4/163 (2%)
Query: 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMA 138
+++ F+ L +LK R GWV RN+ PES++DHMYRM +M L + DI +++++C+K+A
Sbjct: 3 NMLQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLA 61
Query: 139 IVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENST 198
+VHD+AE IVGDI P+D + K EK +RE++A+ ++ LL G R KEI LW EYE S+
Sbjct: 62 LVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSS 120
Query: 199 AEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 239
EAK+VK+ D EMI+QA EYE +GK L+EFF ST GKF
Sbjct: 121 PEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFH 163
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=hddc2 PE=3 SV=1
Length = 190
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 118/190 (62%), Gaps = 13/190 (6%)
Query: 78 SSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGID 130
S+ ++F +C +LKT KR GWV V PES++DHMYRM +MG LI D ID
Sbjct: 2 SNYLEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEID 61
Query: 131 RDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELW 190
+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI + L G KEI +LW
Sbjct: 62 KMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTLS-GEVGKEIFDLW 120
Query: 191 MEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGK-----DLEEFFQSTAGKFQTELGKA 245
EYE+ T EA +VKDFDK EMILQA EYE + + L+ FF ST GKF L K+
Sbjct: 121 QEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKS 180
Query: 246 WAAEIVSRRK 255
A ++ S RK
Sbjct: 181 LALQLESDRK 190
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1
Length = 201
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDK 133
SS+ S++ F+ L +LK R GW+ R V PES++DHMYRM +M ++ D +++D+
Sbjct: 8 SSAGKSLLQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTED-RKLNKDR 66
Query: 134 CIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEY 193
CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL + E+ +LW EY
Sbjct: 67 CIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEY 125
Query: 194 EENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 239
E TAEAK VK+ D+ EMILQA+EYE + + L++F+ STAGKF+
Sbjct: 126 EHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1
Length = 198
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/189 (47%), Positives = 123/189 (65%), Gaps = 9/189 (4%)
Query: 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDK 133
++ S S++ FL RLKTT R GW+ + PESIADHMYRMG++ ++ D P I++++
Sbjct: 3 AAKSLSIVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKER 61
Query: 134 CIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGQGARAKEIDELW 190
C+K+A+VHD+AE+IVGDITP + + KEEK + E EA IT L +A+EI EL+
Sbjct: 62 CLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELF 121
Query: 191 MEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKF-QTELGKAWA 247
+EYE ST EAK VKD DK EMI Q EYE + KDL +F + AGK Q L K W
Sbjct: 122 LEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGWL 179
Query: 248 AEIVSRRKK 256
+++ R++
Sbjct: 180 NDVLQEREQ 188
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1
Length = 238
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 121/182 (66%), Gaps = 7/182 (3%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139
++ FL++ +LK +R G++ + ESI+DHMYR+ ++ +++ D ++RDKC+++A+
Sbjct: 48 ILAFLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIAL 106
Query: 140 VHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGAR---AKEIDELWMEYEEN 196
VHDIAE++VGDITP D I KEEK +RE E I Y+C L + AKEI + W+ YE
Sbjct: 107 VHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENV 166
Query: 197 STAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAWAAEIVSRR 254
++ EA+ VKD DK EM++Q EYE E K+ ++FF + A +T+ K W +++V +R
Sbjct: 167 TSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVAS-IKTDEVKGWTSDLVVQR 225
Query: 255 KK 256
+K
Sbjct: 226 QK 227
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1
Length = 204
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 5/176 (2%)
Query: 66 SSVNGAAFSSSSS-SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA 124
+SV+ A FS + S++ FL L +LK R GWV RNV PES++DHMYRM +M +++
Sbjct: 2 ASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIK 61
Query: 125 DIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAK 184
D +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL + R K
Sbjct: 62 D-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-K 119
Query: 185 EIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 238
E+ ELW EYE S+AEAK VK D+ EMILQA EYE+ + K L++F+ STAGKF
Sbjct: 120 ELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1
Length = 215
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 115/178 (64%), Gaps = 7/178 (3%)
Query: 83 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHD 142
FL++ LKT +R GWV ++ ESI+DHMYRMGL +++ D +DR+KCI++A+VHD
Sbjct: 32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHD 90
Query: 143 IAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQG---ARAKEIDELWMEYEENSTA 199
AE++VGDITP+D + KEEK +RE E + Y+C+ + + + ++EI + W+ YE+ +
Sbjct: 91 FAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCL 150
Query: 200 EAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 255
E + VKD DK EM++Q EYE + KDL++F +T+ K W ++ R+
Sbjct: 151 EGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKWTQSLLEDRQ 207
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1
Length = 205
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 126/182 (69%), Gaps = 10/182 (5%)
Query: 59 SINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGL 118
S +P+A+ S GA +++ FL L +LK R GWV RNV PES++DHMYRM +
Sbjct: 3 SASPVATMSGRGA------RNLLQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAV 56
Query: 119 MGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG 178
M L+ D +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+ + +LL
Sbjct: 57 MALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLP 115
Query: 179 QGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAG 236
+ + KE+ ELW EYE S+AEAK VK D+ EMILQA EYE+ + K L++F+ STAG
Sbjct: 116 EDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAG 174
Query: 237 KF 238
KF
Sbjct: 175 KF 176
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1
Length = 199
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 4/169 (2%)
Query: 72 AFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR 131
A S S + ++ FL L +LK R GWV RNV PES++DHMYRM +M ++ D +++
Sbjct: 4 ASSGSGAGLLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNK 62
Query: 132 DKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWM 191
D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL + R KE+ ELW
Sbjct: 63 DRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWE 121
Query: 192 EYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 238
EYE S+ EAK VK D+ EMILQA EYE+ + K L++F+ STAGKF
Sbjct: 122 EYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170
>sp|B7JUK2|TRPA_CYAP8 Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801)
GN=trpA PE=3 SV=1
Length = 267
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 20 LIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSS 79
LIP T + T ++A R+ +AS + G +PLA V AA + +
Sbjct: 19 LIPFITAGDPDLETT---AKALRL-LDASGADLIELGVPYSDPLADGPVIQAAATRALGR 74
Query: 80 VI---DFLSLCHRLKTTKRAGWVKRNVNNP------ESIADHMYRMGLMGLIMADIPGID 130
+ D L + + +A + NP E+ + G+ GL++ D+P +
Sbjct: 75 GVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEE 134
Query: 131 RDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG 178
+ +K A H++ A+ + P+ I + E R+ + Y+ + G
Sbjct: 135 AESLLKPA--HEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTG 180
>sp|A5E1T3|EIF3A_LODEL Eukaryotic translation initiation factor 3 subunit A
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=TIF32
PE=3 SV=1
Length = 883
Score = 35.8 bits (81), Expect = 0.30, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 159 KEEKSQREREAITYMCKL-LGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAV 217
KEEK QRE+EAI K L + AK I ++ M +KD DK+++ L +
Sbjct: 624 KEEKLQREKEAILENEKRKLAEEINAKGIIKVDMNN----------LKDLDKSKLQLMQI 673
Query: 218 EYENEQGKDLEEFFQSTAGK 237
E N+ K+LEE + TA K
Sbjct: 674 EQLNKDRKELEEKLKGTAKK 693
>sp|B2VIV0|Y1201_ERWT9 UPF0207 protein ETA_12010 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=ETA_12010 PE=3 SV=1
Length = 198
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 83 FLSLCHRLKTTKRAGW-VKRNVNNPESIADHMYRMGLMGLIMADIPG------IDRDKCI 135
F + RLK R W + RNV E++++H ++ ++ +A I ++ ++
Sbjct: 6 FFAHLSRLKLINR--WPLMRNVRT-ENVSEHSLQVAMVAHALALIKNARFAGNLNPERIA 62
Query: 136 KMAIVHDIAEAIVGDI-TP---SDGIPKEEKSQREREAITYMCKLLGQGAR---AKEIDE 188
MA+ HD +E + GD+ TP + E + E+ A + ++L + R A IDE
Sbjct: 63 LMAVYHDASEVLTGDLPTPVKYYNAQIAHEYKKIEKIAQHKLIEMLPEELRSAYAPLIDE 122
Query: 189 LWMEYEENSTAEAKIVKDFD 208
++S AE IVK D
Sbjct: 123 -----HQHSEAETAIVKQAD 137
>sp|Q9ERC1|MYO16_RAT Unconventional myosin-XVI OS=Rattus norvegicus GN=Myo16 PE=1 SV=1
Length = 1912
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 99 VKRNVNNPESIADHMY------RMGLMGLIMADIPGIDRDKCIK--MAIVHDIAEAIVGD 150
VK N + + DH Y +G++GL+ G + ++ +A ++G+
Sbjct: 1041 VKPNTSQLPGVFDHFYVSAQLQYLGVLGLVRLFRYGYPVRPSFEDFLSRYEPLASVLLGE 1100
Query: 151 ITPSDGIPKEEKSQREREAITYMCKLLG----------QGARAKEIDELWMEYEENSTAE 200
G P EE+ + + CKL G + + ++ +LW++ +
Sbjct: 1101 ---KKGQPAEERCR----LVLQRCKLQGWQMGVHKVFLKYWQVDQLGDLWLQMQRKIVTC 1153
Query: 201 AKIVKDFDKAEMILQAVEYENEQGKDLEEFFQST 234
K+++ F + +LQ + + ++ ++ F QST
Sbjct: 1154 QKVIRGFLARQHLLQRMSIKQQEVTSIKSFLQST 1187
>sp|Q5FL81|RNY_LACAC Ribonuclease Y OS=Lactobacillus acidophilus (strain ATCC 700396 /
NCK56 / N2 / NCFM) GN=rny PE=3 SV=1
Length = 543
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + + +++ H +G +
Sbjct: 314 ARKEVNDDIYEAGESALMELG--IHRMNPELVKTLGRLKYHTSYGQNVLSHSIEVGKLAG 371
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 372 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 404
>sp|A8YUB8|RNY_LACH4 Ribonuclease Y OS=Lactobacillus helveticus (strain DPC 4571) GN=rny
PE=3 SV=1
Length = 543
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 314 ARKEVNDDIYEAGESALMELG--IHRMNPELVKTLGRLKYRTSYGQNVLSHSIEVGKLAG 371
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 372 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 404
>sp|Q9CMR5|Y747_PASMU UPF0207 protein PM0747 OS=Pasteurella multocida (strain Pm70)
GN=PM0747 PE=3 SV=1
Length = 195
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 83 FLSLCHRLKTTKRAGW-VKRNVNNPESIADHMYRMGLMGLIMADIPG------IDRDKCI 135
F + RL+ +R W + RN+ E++A+H ++ + +A I ++ D+
Sbjct: 6 FFACLDRLRLIQR--WSLMRNIEK-ENLAEHSLQVAFVAHALAVIKNKFYQGHLNPDRIA 62
Query: 136 KMAIVHDIAEAIVGDI-TPSDGI-PKEEKSQRERE 168
MA+ HD +E GD+ TP PK ++ +E E
Sbjct: 63 VMAMYHDTSEIFTGDLPTPIKYFNPKITQAYKEIE 97
>sp|Q04BJ7|RNY_LACDB Ribonuclease Y OS=Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC BAA-365) GN=rny PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 318 ARKEVNDDIYEAGESALMELG--IHRMNPELVKILGRLKYRTSYGQNVLAHSIEVGKLAG 375
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 376 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 408
>sp|Q1GB50|RNY_LACDA Ribonuclease Y OS=Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC 11842 / DSM 20081) GN=rny PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 318 ARKEVNDDIYEAGESALMELG--IHRMNPELVKILGRLKYRTSYGQNVLAHSIEVGKLAG 375
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 376 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 408
>sp|Q5DU14|MYO16_MOUSE Unconventional myosin-XVI OS=Mus musculus GN=Myo16 PE=1 SV=2
Length = 1919
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/154 (18%), Positives = 64/154 (41%), Gaps = 25/154 (16%)
Query: 99 VKRNVNNPESIADHMY------RMGLMGLIMADIPGIDRDKCIK--MAIVHDIAEAIVGD 150
+K N + + DH Y +G++GL+ G + ++ +A ++G+
Sbjct: 1040 IKPNTSQLPGVFDHFYVSAQLQYLGVLGLVRLFRSGYPVRPSFEDFLSRYEPLASVLLGE 1099
Query: 151 ITPSDGIPKEEKSQREREAITYMCKLLG----------QGARAKEIDELWMEYEENSTAE 200
+ G EE+ + + CKL G + ++ +LW++ +
Sbjct: 1100 ---TKGQAAEERCR----LVLQRCKLQGWQIGVHKVFLKYWHVDQLSDLWLQLQRKIVTC 1152
Query: 201 AKIVKDFDKAEMILQAVEYENEQGKDLEEFFQST 234
K+++ F + +LQ + + ++ ++ F QST
Sbjct: 1153 QKVIRGFLARQHLLQRMSIKQQEVTSIKSFLQST 1186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,062,164
Number of Sequences: 539616
Number of extensions: 3422541
Number of successful extensions: 17546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 16104
Number of HSP's gapped (non-prelim): 1033
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)