Query 025188
Match_columns 256
No_of_seqs 133 out of 852
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3197 Predicted hydrolases o 100.0 2.9E-56 6.3E-61 385.1 20.5 179 76-256 23-203 (210)
2 PF13023 HD_3: HD domain; PDB: 100.0 2.3E-44 5E-49 306.6 8.3 148 87-235 1-150 (165)
3 PRK03826 5'-nucleotidase; Prov 100.0 2.6E-39 5.6E-44 283.5 16.7 167 80-250 2-181 (195)
4 COG1896 Predicted hydrolases o 100.0 9.6E-36 2.1E-40 260.5 16.9 172 79-253 4-182 (193)
5 PF12917 HD_2: HD containing h 99.9 2.2E-25 4.8E-30 197.4 17.2 168 80-251 3-186 (215)
6 PRK10119 putative hydrolase; P 98.5 3.8E-06 8.3E-11 76.0 13.4 133 110-249 27-196 (231)
7 cd00077 HDc Metal dependent ph 98.0 4.9E-06 1.1E-10 63.6 3.3 46 107-152 1-49 (145)
8 smart00471 HDc Metal dependent 97.9 4.5E-05 9.8E-10 57.3 7.3 108 106-217 2-119 (124)
9 TIGR00295 conserved hypothetic 97.8 0.00035 7.6E-09 59.6 11.7 124 106-250 11-156 (164)
10 PF01966 HD: HD domain; Inter 97.8 9E-06 2E-10 62.2 1.5 42 109-150 1-44 (122)
11 TIGR03401 cyanamide_fam HD dom 97.5 0.00097 2.1E-08 60.2 11.0 100 107-214 54-167 (228)
12 PRK12705 hypothetical protein; 97.3 0.00083 1.8E-08 67.2 8.4 91 107-212 322-416 (508)
13 PRK12703 tRNA 2'-O-methylase; 97.0 0.01 2.3E-07 56.8 11.9 41 106-146 185-225 (339)
14 PRK12704 phosphodiesterase; Pr 96.6 0.0076 1.6E-07 60.5 8.3 93 106-212 333-428 (520)
15 COG2206 c-di-GMP phosphodieste 96.6 0.013 2.9E-07 55.4 9.3 143 107-251 147-312 (344)
16 COG1418 Predicted HD superfami 96.6 0.002 4.2E-08 58.0 3.4 43 105-147 33-75 (222)
17 PRK13480 3'-5' exoribonuclease 96.4 0.036 7.8E-07 52.5 11.0 111 107-220 158-286 (314)
18 PRK00106 hypothetical protein; 96.3 0.042 9.1E-07 55.6 11.2 93 107-211 349-442 (535)
19 TIGR03319 YmdA_YtgF conserved 96.1 0.02 4.3E-07 57.5 7.7 95 106-212 327-422 (514)
20 TIGR00277 HDIG uncharacterized 95.8 0.012 2.5E-07 42.2 3.7 42 107-148 3-44 (80)
21 PRK07152 nadD putative nicotin 95.8 0.068 1.5E-06 50.5 9.7 41 107-147 195-235 (342)
22 TIGR00488 putative HD superfam 95.3 0.019 4.1E-07 48.3 3.8 40 107-146 7-46 (158)
23 COG1713 Predicted HD superfami 92.1 0.17 3.7E-06 44.9 3.7 36 109-144 18-53 (187)
24 COG4341 Predicted HD phosphohy 85.5 4.5 9.8E-05 35.6 7.7 73 95-176 18-92 (186)
25 PF08668 HDOD: HDOD domain; I 84.0 2.6 5.6E-05 35.8 5.6 44 106-149 92-136 (196)
26 TIGR03760 ICE_TraI_Pfluor inte 79.7 3 6.5E-05 37.6 4.6 41 107-147 66-121 (218)
27 PF13328 HD_4: HD domain; PDB: 79.1 29 0.00063 28.7 10.1 34 107-145 18-51 (153)
28 PRK01286 deoxyguanosinetriphos 71.2 3.8 8.3E-05 39.4 3.1 38 107-144 61-98 (336)
29 PRK03007 deoxyguanosinetriphos 66.2 5.6 0.00012 39.4 3.2 39 106-144 68-106 (428)
30 TIGR03276 Phn-HD phosphonate d 63.3 19 0.00041 31.7 5.7 37 106-147 23-59 (179)
31 COG3437 Response regulator con 62.7 38 0.00083 33.1 8.0 116 107-222 184-318 (360)
32 COG1639 Predicted signal trans 61.8 11 0.00023 35.7 4.0 49 106-154 114-164 (289)
33 TIGR01596 cas3_HD CRISPR-assoc 58.8 6.9 0.00015 32.3 2.0 37 110-146 2-46 (177)
34 TIGR01353 dGTP_triPase deoxygu 51.7 11 0.00025 36.5 2.5 38 107-144 37-85 (381)
35 PF14244 UBN2_3: gag-polypepti 50.8 1.2E+02 0.0026 24.9 8.3 95 132-233 22-127 (152)
36 COG0232 Dgt dGTP triphosphohyd 49.6 14 0.0003 36.6 2.8 54 90-144 48-109 (412)
37 COG3481 Predicted HD-superfami 45.0 28 0.00061 32.9 3.9 40 107-146 139-180 (287)
38 PRK11092 bifunctional (p)ppGpp 43.2 31 0.00066 36.4 4.3 34 107-145 43-76 (702)
39 TIGR00691 spoT_relA (p)ppGpp s 39.9 60 0.0013 34.0 5.8 34 107-145 18-51 (683)
40 COG1480 Predicted membrane-ass 39.8 2.3E+02 0.0051 30.1 9.9 49 111-159 492-549 (700)
41 COG0751 GlyS Glycyl-tRNA synth 39.6 2.3E+02 0.005 30.1 9.9 128 70-217 321-466 (691)
42 PF02092 tRNA_synt_2f: Glycyl- 36.5 3.1E+02 0.0067 28.3 10.1 97 107-217 353-460 (548)
43 COG2316 Predicted hydrolase (H 35.6 1.3E+02 0.0028 26.9 6.3 106 103-221 43-151 (212)
44 KOG1157 Predicted guanosine po 35.3 84 0.0018 31.7 5.6 29 115-145 103-131 (543)
45 TIGR02621 cas3_GSU0051 CRISPR- 33.5 53 0.0012 35.5 4.3 39 106-144 673-713 (844)
46 COG1078 HD superfamily phospho 30.4 36 0.00079 33.6 2.3 57 86-144 28-96 (421)
47 PRK05007 PII uridylyl-transfer 29.3 4.3E+02 0.0093 28.6 10.2 44 106-149 459-516 (884)
48 PRK01233 glyS glycyl-tRNA synt 28.8 5E+02 0.011 27.5 10.4 97 107-217 356-462 (682)
49 PRK13298 tRNA CCA-pyrophosphor 28.2 6.1E+02 0.013 25.3 12.3 35 107-146 227-261 (417)
50 TIGR01693 UTase_glnD [Protein- 27.3 1E+02 0.0023 32.8 5.2 42 106-147 426-481 (850)
51 PRK05318 deoxyguanosinetriphos 26.3 54 0.0012 32.5 2.7 39 106-144 56-105 (432)
52 COG2844 GlnD UTP:GlnB (protein 25.8 1E+02 0.0022 33.5 4.7 77 76-152 409-504 (867)
53 PRK01096 deoxyguanosinetriphos 25.4 40 0.00087 33.6 1.6 39 106-144 59-112 (440)
54 COG4965 TadB Flp pilus assembl 22.4 2.9E+02 0.0063 26.5 6.7 66 169-235 158-228 (309)
55 PRK10885 cca multifunctional t 22.2 7.5E+02 0.016 24.2 15.5 39 106-149 224-263 (409)
56 PF10463 Peptidase_U49: Peptid 21.6 3.8E+02 0.0082 24.1 6.9 78 74-168 44-131 (206)
57 KOG2681 Metal-dependent phosph 21.4 2.4E+02 0.0052 28.7 6.0 59 87-145 51-121 (498)
No 1
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-56 Score=385.13 Aligned_cols=179 Identities=61% Similarity=1.033 Sum_probs=171.4
Q ss_pred CcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC
Q 025188 76 SSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD 155 (256)
Q Consensus 76 ~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~ 155 (256)
+..++++|+.++++||+++|+||+.+||++|||||+|||||++++|++.+ .|||.+||++|||+||++|+++|||+|.+
T Consensus 23 ~~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP~~ 101 (210)
T KOG3197|consen 23 SSKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITPSD 101 (210)
T ss_pred CchHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 33479999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHh
Q 025188 156 GIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQS 233 (256)
Q Consensus 156 ~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn--~~l~ef~~~ 233 (256)
++++++|+++|-+|++.|++.|++++.++||.+||.|||++.|+||+|||++||++|++||++|++.+| .++++|| +
T Consensus 102 ~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~-s 180 (210)
T KOG3197|consen 102 GVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF-S 180 (210)
T ss_pred CccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH-H
Confidence 999999999999999999999976789999999999999999999999999999999999999999764 4899999 8
Q ss_pred hcccccCHHHHHHHHHHHHhhcC
Q 025188 234 TAGKFQTELGKAWAAEIVSRRKK 256 (256)
Q Consensus 234 ~~~~i~t~~~k~~~~~i~~~r~~ 256 (256)
+.++|+||.+|+|.++|+++|.|
T Consensus 181 t~g~~~~~~vk~w~~el~~~R~~ 203 (210)
T KOG3197|consen 181 TVGKFKTPEVKKWVSELLEERQK 203 (210)
T ss_pred hcccccChHHHHHHHHHHHHHHH
Confidence 89999999999999999999964
No 2
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=100.00 E-value=2.3e-44 Score=306.64 Aligned_cols=148 Identities=46% Similarity=0.756 Sum_probs=126.8
Q ss_pred HhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHH
Q 025188 87 CHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPG--IDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQ 164 (256)
Q Consensus 87 ~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~--vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~ 164 (256)
+++||+++|+||..+|+++|||||||||+||++|+++++..+ +|.+||++|||+||++|++||||++++++.+..|+.
T Consensus 1 ~~~Lk~i~R~gw~~~g~~~~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~ 80 (165)
T PF13023_consen 1 VDRLKFIKRTGWVLRGRPRPESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEE 80 (165)
T ss_dssp HHHCCCSB-HHHHHCTSSSG-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHH
T ss_pred CcccCcccCCCcccCCCCCCccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHH
Confidence 589999999999999987889999999999999999998875 999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhhc
Q 025188 165 REREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTA 235 (256)
Q Consensus 165 ~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~~~~ 235 (256)
+|++|+++++++| |++++.+|..||.|||+++|+||++||++|+|++++|+++|++.++...+.+++...
T Consensus 81 ~E~~a~~~l~~~L-p~~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~lq~~~~~~~~~~~~~~~~~~~~ 150 (165)
T PF13023_consen 81 REEAAIEELFSLL-PEELQEELKELWEEFEEGESPEAKLVKAADKLEPLLQALEYEGDGWSEFEIFLSQFY 150 (165)
T ss_dssp HHHHHHHHHCTTS-SCHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHCCT-T--TTTHHHH
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHHHHHHHccccchHHHHHHHHHh
Confidence 9999999999999 888999999999999999999999999999999999999999988776544444433
No 3
>PRK03826 5'-nucleotidase; Provisional
Probab=100.00 E-value=2.6e-39 Score=283.46 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=142.5
Q ss_pred HHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC----C--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 025188 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI----P--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (256)
Q Consensus 80 ~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~----~--~vD~~Kvv~MALiHDL~Ea~tGDI~~ 153 (256)
..+|+.++++||+|+||||++ +++ +||||||||+||+||++|+.. + ++|++||++|||+||++|++||||++
T Consensus 2 ~~~F~~~~~rLK~i~Rw~~~~-~~~-~EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~t 79 (195)
T PRK03826 2 QSHFFAHLSRLKLINRWPLMR-NVR-TENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPT 79 (195)
T ss_pred hHHHHHHHHhhccccccCCCC-CCC-CCccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCccc
Confidence 478999999999999999985 465 599999999999999999853 3 69999999999999999999999988
Q ss_pred CCC----CChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 025188 154 SDG----IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEE 229 (256)
Q Consensus 154 ~~~----v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~e 229 (256)
|.+ ...+.+++.|++|+++|+++| |++++++|..+|.||+ .+|+||++||++|||++++||++|.+.||..+..
T Consensus 80 PvK~~~~~~~~~~~~~E~~a~~~l~~~L-P~~l~~~~~~~~~e~e-~~~~Ea~lvK~aDkL~a~l~a~~e~~~Gn~ef~~ 157 (195)
T PRK03826 80 PVKYFNPEIAHEYKKIEKIAEQKLLDML-PEELQEDFRPLLDSHA-ASEEEKAIVKQADALCAYLKCLEELSAGNNEFNL 157 (195)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccc-CCcHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 764 223567899999999999999 8889999999999986 6899999999999999999999999999987776
Q ss_pred HHHhhccc---ccCHHHHHHHHHH
Q 025188 230 FFQSTAGK---FQTELGKAWAAEI 250 (256)
Q Consensus 230 f~~~~~~~---i~t~~~k~~~~~i 250 (256)
..++.... ...|+++-..+..
T Consensus 158 a~~~~~~~~~~~~~pev~~f~~~f 181 (195)
T PRK03826 158 AKKRLEKTLEARRSPEMDYFMEVF 181 (195)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHh
Confidence 66554333 3556666555443
No 4
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=9.6e-36 Score=260.49 Aligned_cols=172 Identities=36% Similarity=0.595 Sum_probs=147.4
Q ss_pred HHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 025188 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITP 153 (256)
Q Consensus 79 ~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~-----~vD~~Kvv~MALiHDL~Ea~tGDI~~ 153 (256)
.+++|+..+.+||.++|+||+..|+.++||||+|||+||++|+++++.. ++|++|++.|||+||++|++||||++
T Consensus 4 ~~~~~~~~~~~Lk~i~R~gw~~~g~~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~t 83 (193)
T COG1896 4 DLLKFFALLSRLKDIPRTGWLLRGIWNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPT 83 (193)
T ss_pred hHHHHHHHHHHHHhhhccchhhcCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCC
Confidence 4778889999999999999999999999999999999999999998865 38999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHH
Q 025188 154 SDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFF 231 (256)
Q Consensus 154 ~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~--l~ef~ 231 (256)
+.+.....+++.++++++..+..+- ++ ..++.++|.||++.+|+|+++||++|||++++|+.+|.+.+|.+ +..|+
T Consensus 84 p~k~~~~~~~~~~~e~e~~~~~~~~-~~-p~e~~~~~~~~~~~~s~ea~~vk~aDkl~~~l~~~~~~~~~~~~~~~~~~~ 161 (193)
T COG1896 84 PVKYARAGLYKEEEEAEEAAIHLLF-GL-PEELLELFREYEKRSSLEARIVKDADKLELLLQALEYEQGGNGEDILKAFL 161 (193)
T ss_pred chhhhcchHHHHHHHHHHHHHHccc-CC-cHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 9876666666777777777777762 22 68999999999999999999999999999999999999866665 88888
Q ss_pred HhhcccccCHHHHHHHHHHHHh
Q 025188 232 QSTAGKFQTELGKAWAAEIVSR 253 (256)
Q Consensus 232 ~~~~~~i~t~~~k~~~~~i~~~ 253 (256)
... ..+.+.....|+.+....
T Consensus 162 ~~~-~~l~~~~~~~~~~~~~~~ 182 (193)
T COG1896 162 EAI-IPLRRGEAQKYFLELFEA 182 (193)
T ss_pred Hhh-ccccchHHHHHHHHHHHH
Confidence 764 466776666666655543
No 5
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=99.93 E-value=2.2e-25 Score=197.39 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=121.4
Q ss_pred HHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCCC
Q 025188 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITPS 154 (256)
Q Consensus 80 ~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~-----~vD~~Kvv~MALiHDL~Ea~tGDI~~~ 154 (256)
+.+|+.-+.+|++|.||+-++.- .+ +|||+|||+||.+|++|+... .||+.+++.+||.||++|++||||++|
T Consensus 3 ~~~f~~~l~~le~I~R~pg~fk~-~~-~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TP 80 (215)
T PF12917_consen 3 MHQFFQSLSRLETIIRWPGMFKF-QE-HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTP 80 (215)
T ss_dssp HHHHHHHHHHTTSSBSSTSS--S-S---BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-
T ss_pred HHHHHHHHHhhHHHHHccCccCc-ch-hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCc
Confidence 56899999999999999888764 33 999999999999999999852 589999999999999999999999999
Q ss_pred CCC-Ch---HHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC--h
Q 025188 155 DGI-PK---EEKSQREREAITYMC-KLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--L 227 (256)
Q Consensus 155 ~~v-~~---~~K~~~E~~A~~~L~-~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~--l 227 (256)
++. ++ +.-.+.|+.+.++++ +.+ |+++++.|+....|- +.+|.|+++|++||||+++++|..+.+.||.. +
T Consensus 81 VKy~tPelr~~~~~VE~~m~~~~i~~~i-P~e~q~~Y~~~l~E~-KDdt~EG~Iv~~ADkidal~e~~~Ei~~GN~E~~F 158 (215)
T PF12917_consen 81 VKYATPELREMLAQVEEEMTENFIKKEI-PEEFQEAYRRRLKEG-KDDTLEGQIVKAADKIDALYECFGEIQKGNPEKVF 158 (215)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHS----SSSHHHHHHHHHHHHHHHHHHHHHHHTT-S-THH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 974 33 334478888888877 477 888888888877763 46799999999999999999999999999986 4
Q ss_pred HHHHHhhccc----ccCHHHHHHHHHHH
Q 025188 228 EEFFQSTAGK----FQTELGKAWAAEIV 251 (256)
Q Consensus 228 ~ef~~~~~~~----i~t~~~k~~~~~i~ 251 (256)
.+.+.....+ ...+.+.-..+.++
T Consensus 159 ~e~y~e~l~~i~~~~~~~sV~yFl~~~l 186 (215)
T PF12917_consen 159 KEIYRESLEKIKKFRDMPSVQYFLKEIL 186 (215)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 4444433332 24566665555543
No 6
>PRK10119 putative hydrolase; Provisional
Probab=98.46 E-value=3.8e-06 Score=76.00 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC-CCChHHHHHHHHHHHHHHHHh--cC-CchhHHH
Q 025188 110 ADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD-GIPKEEKSQREREAITYMCKL--LG-QGARAKE 185 (256)
Q Consensus 110 AEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~-~v~~~~K~~~E~~A~~~L~~l--L~-p~~~~~e 185 (256)
-.|..||--+|..|+...+.|..-+...|++||+ ||..... .... . ...-.+.+..++.. .+ |++..+.
T Consensus 27 ~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv-----~d~~k~~~~~~~-~-~~~~a~~a~~~L~~~~~g~~~~~i~~ 99 (231)
T PRK10119 27 ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDI-----VSLAKNHPQRHR-S-SILAAEETRRILREDFPDFPAEKIEA 99 (231)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc-----chhhhcCccccc-h-hhHHHHHHHHHHHHcccCcCHHHHHH
Confidence 5799999999998887778999999999999999 3432211 1110 0 01112222233322 21 5556666
Q ss_pred HHHHHHHHh-----hCCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCC--------------------ChHHHHHh--
Q 025188 186 IDELWMEYE-----ENSTAEAKIVKDFDKAEM-----ILQAVEYENEQGK--------------------DLEEFFQS-- 233 (256)
Q Consensus 186 i~~Lw~EyE-----~~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~--------------------~l~ef~~~-- 233 (256)
+..+...-. ...|+|+++|.+||||++ +..++.|.+..|. .++-|++.
T Consensus 100 V~~iI~~~sfs~~~~p~tlE~kIVQDADRLDAiGAIGIaR~f~~gG~~gr~~~d~~~~~~~~~~~~~~~~~i~HF~eKLl 179 (231)
T PRK10119 100 VCHAIEAHSFSAQIAPLTLEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDAEDPFAQHRPLDDKQYALDHFQTKLL 179 (231)
T ss_pred HHHHHHHcCCCCCCCCCCHHHhhhhhHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCcchhhccccCchhHHHHHHHHHH
Confidence 666664432 245899999999999998 5788888875333 24455543
Q ss_pred -hcccccCHHHHHHHHH
Q 025188 234 -TAGKFQTELGKAWAAE 249 (256)
Q Consensus 234 -~~~~i~t~~~k~~~~~ 249 (256)
....++|+.+|+++++
T Consensus 180 ~L~~~m~T~~gr~lA~~ 196 (231)
T PRK10119 180 KLPQTMQTERGKQLAQH 196 (231)
T ss_pred hhHhhCCCHHHHHHHHH
Confidence 4567999999999874
No 7
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.00 E-value=4.9e-06 Score=63.55 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=39.4
Q ss_pred CcHHhHHHHHHHHHHHhccCC---CCCHHHHHHHHHhhhhhhhhhcCCC
Q 025188 107 ESIADHMYRMGLMGLIMADIP---GIDRDKCIKMAIVHDIAEAIVGDIT 152 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~---~vD~~Kvv~MALiHDL~Ea~tGDI~ 152 (256)
+++.+||++|+.++..++... +.|.+.+...||+||+++...++..
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~~~~ 49 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAI 49 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCcccc
Confidence 478899999999999888754 5778899999999999998877754
No 8
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.92 E-value=4.5e-05 Score=57.32 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCchhH
Q 025188 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCK-LLGQGARA 183 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~v-D~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~-lL~p~~~~ 183 (256)
.+++.+|+++++.++..+++..+. |.+.+...||+||+++...++...... . ....-+......+-. .+ +....
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~-~--~~~~h~~~~~~~~~~~~~-~~~~~ 77 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKT-S--VLEDHHFIGAEILLEEEE-PRILE 77 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCc-c--HHHHhHHHHHHHHHhCCC-CHHHH
Confidence 378999999999999999887655 778899999999999988876543210 0 111112222222211 12 22111
Q ss_pred HHHH--HHHH------HHhhCCcHHHHHHHHHHHHHHHHHHH
Q 025188 184 KEID--ELWM------EYEENSTAEAKIVKDFDKAEMILQAV 217 (256)
Q Consensus 184 ~ei~--~Lw~------EyE~~~T~EAklVK~aDkLe~llQa~ 217 (256)
+-.. -.+. +++...+.++++++.+|+++.+.+..
T Consensus 78 ~~~~~~i~~h~~~~~~~~~~~~~~~~~il~~aD~~~~~~~~~ 119 (124)
T smart00471 78 EILATAILSHHERPDGLRGEPITLEARIVKVADRLDALRRDR 119 (124)
T ss_pred HHHhhHHHHhccccCCCCCCcCCHHHHHHHHHHHHHHHhcCC
Confidence 1100 1111 12336788999999999999987653
No 9
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.80 E-value=0.00035 Score=59.61 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC-----CCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-C
Q 025188 106 PESIADHMYRMGLMGLIMADIPG-----IDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-Q 179 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~-----vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p 179 (256)
++++-+||.+|+.+|..++..++ +|.+.+...||+||++-..+-+ ....... . +++...+ |
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~------~~H~~~G------~-~iL~~~g~~ 77 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHG------FEHFVKG------A-EILRKEGVD 77 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCC------CCHHHHH------H-HHHHHcCCC
Confidence 48899999999999999988653 8999999999999997554311 1111110 0 1222221 2
Q ss_pred chhHHHHHHHH---------HHHh------hCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhhcccccCH-HH
Q 025188 180 GARAKEIDELW---------MEYE------ENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTE-LG 243 (256)
Q Consensus 180 ~~~~~ei~~Lw---------~EyE------~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~~~~~~i~t~-~~ 243 (256)
+....-+..-. .+|. ...|+|+++|..||++.+ ......+++.+.....++.+. ..
T Consensus 78 ~~i~~iI~~H~~~g~p~~~~~~~~l~~~~~~p~t~ea~IV~~AD~l~~--------~~~~~~~e~~~~~~~~~~~~~~~~ 149 (164)
T TIGR00295 78 EKIVRIAERHFGAGINAEEASKLGLPPKDYMPETLEEKIVAHADNLIM--------GVREVTIDEVIKKLEERLGKNHPS 149 (164)
T ss_pred HHHHHHHHHHhCCCCchhhHhhcCCCcccCCCCCHHHHHHHHHHHhcc--------ccccccHHHHHHHHHHHhCCChHH
Confidence 11111111000 0110 135789999999999973 234457888887666665544 35
Q ss_pred HHHHHHH
Q 025188 244 KAWAAEI 250 (256)
Q Consensus 244 k~~~~~i 250 (256)
+.++...
T Consensus 150 ~~~~~~~ 156 (164)
T TIGR00295 150 IERARKL 156 (164)
T ss_pred HHHHHHH
Confidence 5544433
No 10
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=97.78 E-value=9e-06 Score=62.19 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhhhhhhhcC
Q 025188 109 IADHMYRMGLMGLIMADIPG--IDRDKCIKMAIVHDIAEAIVGD 150 (256)
Q Consensus 109 VAEHS~rvAliAllLa~~~~--vD~~Kvv~MALiHDL~Ea~tGD 150 (256)
+.+||.+|+-+|..++...+ .|.+.+...||+||++-...+|
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHSTHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCCch
Confidence 46899999999999888666 8888999999999999988775
No 11
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.53 E-value=0.00097 Score=60.24 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=61.1
Q ss_pred CcHHhHHHHHHHHHHHhccCC----CCCHHHHHHHHHhhhhhhhhhcCCCCCC---CCChHHHHHHHHHHHHHHHHhc-C
Q 025188 107 ESIADHMYRMGLMGLIMADIP----GIDRDKCIKMAIVHDIAEAIVGDITPSD---GIPKEEKSQREREAITYMCKLL-G 178 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~----~vD~~Kvv~MALiHDL~Ea~tGDI~~~~---~v~~~~K~~~E~~A~~~L~~lL-~ 178 (256)
+-.-.||+||..+|..++... +.|.+-+..-||+||++ |...+. +...+. ....+..+++... |
T Consensus 54 ~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG-----~~~~~~~~~~~~fe~---~ga~~A~~~L~~~~G 125 (228)
T TIGR03401 54 PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG-----TTDENMTATKMSFEF---YGGILALDVLKEQTG 125 (228)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc-----cccccCCcccCCHHH---HHHHHHHHHHHHCCC
Confidence 356789999999999988632 79999999999999985 332221 111111 1112222333332 2
Q ss_pred -CchhHHHHHHHHHHHh-----hCCcHHHHHHHHHHHHHHHH
Q 025188 179 -QGARAKEIDELWMEYE-----ENSTAEAKIVKDFDKAEMIL 214 (256)
Q Consensus 179 -p~~~~~ei~~Lw~EyE-----~~~T~EAklVK~aDkLe~ll 214 (256)
+++..+.+......-+ ...++|+++|.++|+++.+=
T Consensus 126 ~~~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~G 167 (228)
T TIGR03401 126 ANQDQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVG 167 (228)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHcc
Confidence 3333444443333221 23478999999999998863
No 12
>PRK12705 hypothetical protein; Provisional
Probab=97.31 E-value=0.00083 Score=67.21 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=63.6
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
.|+-+||.+||.+|..+|...|+|.+.+...+|+||++.+...++. .+... .-.+++...+ |. .
T Consensus 322 qnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie~e~~----~~H~~-------iGaeLlkk~~~p~----~ 386 (508)
T PRK12705 322 QNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSIDRESD----GNHVE-------IGAELARKFNEPD----E 386 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcchhhhc----ccHHH-------HHHHHHHhcCCCH----H
Confidence 6799999999999999999889999999999999999997644331 11111 1112333332 22 2
Q ss_pred HHHHH---HHHhhCCcHHHHHHHHHHHHHH
Q 025188 186 IDELW---MEYEENSTAEAKIVKDFDKAEM 212 (256)
Q Consensus 186 i~~Lw---~EyE~~~T~EAklVK~aDkLe~ 212 (256)
+...+ .+...+.++++++|..+|.++.
T Consensus 387 Vv~aI~~HHe~~~~~~~~a~IVaiADaLSa 416 (508)
T PRK12705 387 VINAIASHHNKVNPETVYSVLVQIADALSA 416 (508)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHcC
Confidence 33333 3444678899999999998765
No 13
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.98 E-value=0.01 Score=56.75 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=37.0
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
+|.+..|+.+|+-+|..++..+++|.+.+...||+||++-.
T Consensus 185 ~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~ 225 (339)
T PRK12703 185 SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRT 225 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccc
Confidence 47899999999999999998889999999999999999543
No 14
>PRK12704 phosphodiesterase; Provisional
Probab=96.61 E-value=0.0076 Score=60.51 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=60.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcCCchhHHH
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKE 185 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~e 185 (256)
..|+-.||.+||.+|..+|...|+|.+.+...+|+||++-+...++. .+..... ..++...+ . ...
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~~~e~~----~~H~~iG-------a~il~~~~-~--~~~ 398 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDHEVE----GSHVEIG-------AELAKKYK-E--SPV 398 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCcccccc----CCHHHHH-------HHHHHHcC-C--CHH
Confidence 36789999999999999999889999999999999999887533321 1111110 11222221 1 112
Q ss_pred HHHHHH---HHhhCCcHHHHHHHHHHHHHH
Q 025188 186 IDELWM---EYEENSTAEAKIVKDFDKAEM 212 (256)
Q Consensus 186 i~~Lw~---EyE~~~T~EAklVK~aDkLe~ 212 (256)
+..... +-....++++.+|.++|.|+.
T Consensus 399 v~~aI~~HHe~~~~~~~~a~IV~~ADaLsa 428 (520)
T PRK12704 399 VINAIAAHHGDEEPTSIEAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHhC
Confidence 222221 212456899999999998764
No 15
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=96.57 E-value=0.013 Score=55.36 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=88.6
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHH---HHHHHHhhhhhhhhhcCCCC--CCCCChHHHHHHHHHHH--HHHHHhcCC
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDK---CIKMAIVHDIAEAIVGDITP--SDGIPKEEKSQREREAI--TYMCKLLGQ 179 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~K---vv~MALiHDL~Ea~tGDI~~--~~~v~~~~K~~~E~~A~--~~L~~lL~p 179 (256)
+....||.+||.+|..+|...|++.++ +..-|++||++-+.+=|-.- +.+.+.++....=.... ..++..+ +
T Consensus 147 ~~t~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~~~-~ 225 (344)
T COG2206 147 DYTYGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILKDL-P 225 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHHhc-c
Confidence 788999999999999999988876664 46678999998877654322 22344443322111111 1244444 2
Q ss_pred chhHHHHHHH---HHHHh-----------hCCcHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHhhcccccCHHH
Q 025188 180 GARAKEIDEL---WMEYE-----------ENSTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELG 243 (256)
Q Consensus 180 ~~~~~ei~~L---w~EyE-----------~~~T~EAklVK~aDkLe~llQa~ey~~~g--n~~l~ef~~~~~~~i~t~~~ 243 (256)
. ..+..... ..|-. +.-+.+||++..||-++++...--|.+.- +..+.+..+...++|....+
T Consensus 226 ~-~~~~~~~~~l~HHEr~DGtGYP~GL~GeeI~l~aRIiAVADvydAlts~RpYkka~s~~~Al~~l~~~~~~~fDp~vv 304 (344)
T COG2206 226 E-FLESVRAVALRHHERWDGTGYPRGLKGEEIPLEARIIAVADVYDALTSDRPYKKAKSPEEALEELRKNSGGKFDPKVV 304 (344)
T ss_pred c-ccHHHHHHHHHhhhccCCCCCCCCCCcccCChHhHHHHHhhHHHHHhcCCCCcccCCHHHHHHHHHHhcCCCCCHHHH
Confidence 1 11222222 22322 24569999999999999999777675542 22455555555556777777
Q ss_pred HHHHHHHH
Q 025188 244 KAWAAEIV 251 (256)
Q Consensus 244 k~~~~~i~ 251 (256)
..+.+.+.
T Consensus 305 ~~~~~~~~ 312 (344)
T COG2206 305 DAFLKALS 312 (344)
T ss_pred HHHHHHHh
Confidence 76666554
No 16
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=96.56 E-value=0.002 Score=57.97 Aligned_cols=43 Identities=28% Similarity=0.551 Sum_probs=38.9
Q ss_pred CCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 025188 105 NPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (256)
Q Consensus 105 ~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~ 147 (256)
..+|+-+||-+|+.+|+.++...|+|++-+.+-||+||++=..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccc
Confidence 3489999999999999999998899999999999999995444
No 17
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=96.41 E-value=0.036 Score=52.48 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=67.3
Q ss_pred CcHHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhhh--hcCCCC-CC---C-CChHHHHHHHHHHHHHHHHhcC
Q 025188 107 ESIADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEAI--VGDITP-SD---G-IPKEEKSQREREAITYMCKLLG 178 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~-~vD~~Kvv~MALiHDL~Ea~--tGDI~~-~~---~-v~~~~K~~~E~~A~~~L~~lL~ 178 (256)
-=.++||..|+-+|..+++.+ .+|++-++..||+||++=+. .|++.+ +. + +....- -.+.+.+....++
T Consensus 158 GGLleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~l---g~~~i~~~~~~l~ 234 (314)
T PRK13480 158 SGLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHISI---MVNEIAKAADELQ 234 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHHH---HHHHHHHHHHHcC
Confidence 458999999999999998877 79999999999999998543 444321 11 1 111000 0111122222221
Q ss_pred -CchhHHHHHHH----HHHHh-----hCCcHHHHHHHHHHHHHHHHHHHHHH
Q 025188 179 -QGARAKEIDEL----WMEYE-----ENSTAEAKIVKDFDKAEMILQAVEYE 220 (256)
Q Consensus 179 -p~~~~~ei~~L----w~EyE-----~~~T~EAklVK~aDkLe~llQa~ey~ 220 (256)
+.+....+.-+ .-++| .-.|+||-+++.+|.|++-++.+...
T Consensus 235 ~~~e~~~~L~H~ILSHHG~~E~GSPv~P~t~EA~iLh~~D~lDAkl~~~~~~ 286 (314)
T PRK13480 235 IDGEEVLILQHMVLSHHGKAEWGSPKPPLVKEAEILHYIDNIDAKMNMMDRA 286 (314)
T ss_pred CCHHHHHHHHhhhhccCCccccCCCCCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 22111111111 12333 35689999999999999999887543
No 18
>PRK00106 hypothetical protein; Provisional
Probab=96.27 E-value=0.042 Score=55.56 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
+++-+||..||.+|..+|..+|+|.+.+...+|+||++-++...+.. +.... -..++...+ |+....-
T Consensus 349 qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~e~~g----~Ha~i-------Ga~ll~~~~~~~~v~~a 417 (535)
T PRK00106 349 QNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDREVEG----SHVEI-------GMEFARKYKEHPVVVNT 417 (535)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCccccC----ChHHH-------HHHHHHHcCCCHHHHHH
Confidence 78999999999999999998899999999999999999986433311 11111 112222221 2222222
Q ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHH
Q 025188 186 IDELWMEYEENSTAEAKIVKDFDKAE 211 (256)
Q Consensus 186 i~~Lw~EyE~~~T~EAklVK~aDkLe 211 (256)
+..=..++ ...++++.+|..+|.|.
T Consensus 418 I~~HH~~~-~~~s~~a~IV~~AD~ls 442 (535)
T PRK00106 418 IASHHGDV-EPESVIAVIVAAADALS 442 (535)
T ss_pred HHHhCCCC-CCCChHHHHHHHHHHhc
Confidence 21111122 35689999999999887
No 19
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.06 E-value=0.02 Score=57.49 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHH
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~ 184 (256)
..++-.||.+||.+|..+|..+|+|.+.+...+|+||++-++.-++. .+.... -..++...+ |.....
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~e~~----~~H~~~-------Ga~ll~~~~~~~~V~~ 395 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDHEVE----GSHVEI-------GAELAKKYKESPEVVN 395 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccchhhc----ccHHHH-------HHHHHHHcCCCHHHHH
Confidence 36788999999999999999889999999999999999876422211 011110 012222221 222222
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHH
Q 025188 185 EIDELWMEYEENSTAEAKIVKDFDKAEM 212 (256)
Q Consensus 185 ei~~Lw~EyE~~~T~EAklVK~aDkLe~ 212 (256)
.+..=. +-....++++.+|..+|.++.
T Consensus 396 aI~~HH-~~~~~~~~~a~IV~~AD~lsa 422 (514)
T TIGR03319 396 AIAAHH-GDVEPTSIEAVLVAAADALSA 422 (514)
T ss_pred HHHHhC-CCCCCCCHHHHHHHHHHHhcC
Confidence 221111 112356899999999999886
No 20
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.81 E-value=0.012 Score=42.22 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=37.0
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIV 148 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~t 148 (256)
+.+-.|+.+++.+|..++...++|.+.+...||+||++....
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPIT 44 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCccc
Confidence 467899999999999999877899999999999999977653
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.78 E-value=0.068 Score=50.47 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=37.5
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~ 147 (256)
+..-.||.+||.+|..+|...|+|.+++...+|+||++-..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEW 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccC
Confidence 66789999999999999988899999999999999999853
No 22
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.34 E-value=0.019 Score=48.27 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=36.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
+.--+||.+||.+|..+|...++|.+++...+|+||++..
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKF 46 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhcc
Confidence 6678999999999999998878999999999999999973
No 23
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.11 E-value=0.17 Score=44.90 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 025188 109 IADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (256)
Q Consensus 109 VAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~ 144 (256)
=-+|+-+|+=+|.-||..+++|.+|+-.-+|+||++
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~a 53 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIA 53 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999985
No 24
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=85.50 E-value=4.5 Score=35.64 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=45.8
Q ss_pred ccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh--hcCCCCCCCCChHHHHHHHHHHHHH
Q 025188 95 RAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI--VGDITPSDGIPKEEKSQREREAITY 172 (256)
Q Consensus 95 R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~--tGDI~~~~~v~~~~K~~~E~~A~~~ 172 (256)
|.|=-..+ .+|=|-.||+.+.|.+|+--. .| +.+|.-||.|||+-.+ -||.+...++.+ ...|..+..-
T Consensus 18 ~~g~e~y~-ge~VTq~eHaLQ~AtlAerdG----a~-~~lVaaALLHDiGhl~~~~g~~ps~~~i~d---~~hee~~~~v 88 (186)
T COG4341 18 RHGDEGYS-GEPVTQLEHALQCATLAERDG----AD-TALVAAALLHDIGHLYADYGHTPSAAGIDD---PFHEEFATPV 88 (186)
T ss_pred Hccccccc-cCcchhhhhHHHHhHHHHhcC----Cc-HHHHHHHHHHhHHHHhhhcCCCccccccch---hHHHHHhHHH
Confidence 44444322 135778999999888766433 22 5688999999999876 567777665532 3344455444
Q ss_pred HHHh
Q 025188 173 MCKL 176 (256)
Q Consensus 173 L~~l 176 (256)
|-.+
T Consensus 89 L~~~ 92 (186)
T COG4341 89 LRKL 92 (186)
T ss_pred HHHh
Confidence 4333
No 25
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=84.03 E-value=2.6 Score=35.76 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhc
Q 025188 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVG 149 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~v-D~~Kvv~MALiHDL~Ea~tG 149 (256)
.+..-.||..+|.+|..++...+. +++.+...+|+||+++.+.=
T Consensus 92 ~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gLL~~iG~l~l~ 136 (196)
T PF08668_consen 92 LERFWRHSLAAAAIARRLARELGFDDPDEAYLAGLLHDIGKLLLL 136 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHH
Confidence 377899999999999998887754 45999999999999998754
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=79.71 E-value=3 Score=37.59 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=32.8
Q ss_pred CcHHhHHHHHHHHHHHhccCC----CCCHH-----------HHHHHHHhhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIP----GIDRD-----------KCIKMAIVHDIAEAI 147 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~----~vD~~-----------Kvv~MALiHDL~Ea~ 147 (256)
--..+||..|+.+|+-++..+ |.+++ -++..||+|||+.++
T Consensus 66 GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 66 GGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Confidence 458999999999999888754 45544 478899999999874
No 27
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=79.07 E-value=29 Score=28.69 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=22.3
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAE 145 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~E 145 (256)
+..-.|-..||.+ ++.. |.| +.++.-||+||..|
T Consensus 18 ~py~~H~~~va~~---l~~~-~~d-~~~i~aalLHD~ie 51 (153)
T PF13328_consen 18 EPYISHPLEVAEI---LAEL-GLD-EETIAAALLHDVIE 51 (153)
T ss_dssp -BTTHHHHHHHHH---HHTS-----HHHHHHHHHTTHHH
T ss_pred CcHHHHHHHHHHH---HHHc-CCC-HHHHhhheeecHHH
Confidence 4455788887665 4444 566 45889999999999
No 28
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=71.18 E-value=3.8 Score=39.35 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=32.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~ 144 (256)
-|=-+||..|+-+|-.++...+.|.+-+-..||.|||+
T Consensus 61 rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 61 RTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 36789999999999988887678887777899999995
No 29
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=66.15 E-value=5.6 Score=39.41 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~ 144 (256)
.-|--.||..||-+|-.++...+.|..-+-..||.|||+
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 467899999999999998887788888888999999995
No 30
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=63.31 E-value=19 Score=31.74 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~ 147 (256)
+=|-.+|+.++|.+|.- .|.| +.++..||+||++-.+
T Consensus 23 ~Vs~leH~LQ~A~lA~~----~Gad-~elvvAALLHDIGhll 59 (179)
T TIGR03276 23 AVSQLEHALQCAQLAEA----AGAD-DELIVAAFLHDIGHLL 59 (179)
T ss_pred CCcHHHHHHHHHHHHHH----cCCC-HHHHHHHHHHhcchhh
Confidence 45678999999887653 3555 5568999999997543
No 31
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=62.73 E-value=38 Score=33.05 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=67.4
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHH---HHHHHHHhhhhhhhhhcCCC--CCCCCChHHHHHHHH--HHHHHHHHhcCC
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRD---KCIKMAIVHDIAEAIVGDIT--PSDGIPKEEKSQRER--EAITYMCKLLGQ 179 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~---Kvv~MALiHDL~Ea~tGDI~--~~~~v~~~~K~~~E~--~A~~~L~~lL~p 179 (256)
-.+++|.-|++-++-.+|+.+|+... -+.+-|.+||++=+-+=|-. .+.+.+.++....-. ..-.++++.+.+
T Consensus 184 ~etg~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~~G~~il~~s~~ 263 (360)
T COG3437 184 YETGDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPILGAEILKSSER 263 (360)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchHHHHHHHHHHHH
Confidence 46799999999999999998876554 45777899999776655532 122333333211100 001122222200
Q ss_pred -chhHHHHHHHHHHHhh-----------CCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 025188 180 -GARAKEIDELWMEYEE-----------NSTAEAKIVKDFDKAEMILQAVEYENE 222 (256)
Q Consensus 180 -~~~~~ei~~Lw~EyE~-----------~~T~EAklVK~aDkLe~llQa~ey~~~ 222 (256)
-..+.+|..-..|-=+ .--..|++++.+|-++++.-..-|.+.
T Consensus 264 ~mq~a~eIa~~HHErwDGsGYPdgLkGd~IPl~arI~aiADvfDAL~s~r~Yk~~ 318 (360)
T COG3437 264 LMQVAAEIARHHHERWDGSGYPDGLKGDEIPLSARIVAIADVFDALVSGRPYKEA 318 (360)
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHhcCCCCCCC
Confidence 0122334333333212 223899999999999999977666553
No 32
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=61.76 E-value=11 Score=35.73 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=42.3
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC-CCHHHHHHHHHhhhhhhhh-hcCCCCC
Q 025188 106 PESIADHMYRMGLMGLIMADIPG-IDRDKCIKMAIVHDIAEAI-VGDITPS 154 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~-vD~~Kvv~MALiHDL~Ea~-tGDI~~~ 154 (256)
...+-+++++.|++|..+++..| .+.++++.-.|+|++++.. .-|.+++
T Consensus 114 ~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~~gLLh~lG~l~ll~~~~~~ 164 (289)
T COG1639 114 RQLFWDTAIETAMIAEGLARALGRADSDEAYTAGLLHNLGILVLLTDFPDH 164 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHccHHHHHHHhHHH
Confidence 37789999999999999999886 9999999999999999976 4555544
No 33
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=58.78 E-value=6.9 Score=32.28 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHh-------ccCCCCC-HHHHHHHHHhhhhhhh
Q 025188 110 ADHMYRMGLMGLIM-------ADIPGID-RDKCIKMAIVHDIAEA 146 (256)
Q Consensus 110 AEHS~rvAliAllL-------a~~~~vD-~~Kvv~MALiHDL~Ea 146 (256)
.+|+..|+-++..+ +...+.+ .+-+...|++||++=+
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccC
Confidence 58999999988753 3333433 5566778999999764
No 34
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=51.66 E-value=11 Score=36.51 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.3
Q ss_pred CcHHhHHHHHHHHHHHhccCCCC-----------CHHHHHHHHHhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGI-----------DRDKCIKMAIVHDIA 144 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~v-----------D~~Kvv~MALiHDL~ 144 (256)
-|=-+||..||-+|-.++...+. |..-+-..||.|||+
T Consensus 37 ~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 37 RTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred cCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 46689999999999877654322 666677899999995
No 35
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=50.83 E-value=1.2e+02 Score=24.92 Aligned_cols=95 Identities=13% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHHh-hhhhhhhhcCCCCCCCCCh--HHHHHHHHHHHHHHHHhcCCchhHHHH------HHHHHHHhhCCcHHHH
Q 025188 132 DKCIKMAIV-HDIAEAIVGDITPSDGIPK--EEKSQREREAITYMCKLLGQGARAKEI------DELWMEYEENSTAEAK 202 (256)
Q Consensus 132 ~Kvv~MALi-HDL~Ea~tGDI~~~~~v~~--~~K~~~E~~A~~~L~~lL~p~~~~~ei------~~Lw~EyE~~~T~EAk 202 (256)
...+.++|. +++-..+.|++++|..-.. +...+.-..++.-|+..+. ++....| .++|+.. +.+
T Consensus 22 ~~~~~~~L~~~~l~~~i~g~~~~P~~~~~~~~~W~~~d~~v~swl~~sis-~~i~~~i~~~~tak~~W~~L------~~~ 94 (152)
T PF14244_consen 22 SQQMEMALRGKGLWGFIDGTIPKPPETDPAYEKWERKDQLVLSWLLNSIS-PDILSTIIFCETAKEIWDAL------KER 94 (152)
T ss_pred HHHHHHHHHhCCCcccccCccccccccchhhhhHHHhhhHHHHHHHHhhc-HHHHhhhHhhhhHHHHHHHH------HHH
Confidence 345666555 7888999999988754322 2333444445555666662 2222112 2345443 333
Q ss_pred HHHHH--HHHHHHHHHHHHHHhcCCChHHHHHh
Q 025188 203 IVKDF--DKAEMILQAVEYENEQGKDLEEFFQS 233 (256)
Q Consensus 203 lVK~a--DkLe~llQa~ey~~~gn~~l~ef~~~ 233 (256)
|...- -++-.+-+.+...++|+..+.+++..
T Consensus 95 f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~ 127 (152)
T PF14244_consen 95 FSQKSNASRVFQLRNELHSLKQGDKSVTEYFNK 127 (152)
T ss_pred hhcccHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 33222 23334555555666778889988864
No 36
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=49.56 E-value=14 Score=36.63 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=38.5
Q ss_pred hccccccCccCCCCC---CCCcHHhHHHHHHHHHHHhccCCCCC-----HHHHHHHHHhhhhh
Q 025188 90 LKTTKRAGWVKRNVN---NPESIADHMYRMGLMGLIMADIPGID-----RDKCIKMAIVHDIA 144 (256)
Q Consensus 90 LK~i~R~Gw~~~gi~---~~ESVAEHS~rvAliAllLa~~~~vD-----~~Kvv~MALiHDL~ 144 (256)
+++++....++ +.. ..-|=-.||-.||.||=.++...+.| .+=|=..||.||++
T Consensus 48 fRRLq~KTQVf-~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiG 109 (412)
T COG0232 48 FRRLQDKTQVF-PLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIG 109 (412)
T ss_pred HHhhcccceec-ccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCC
Confidence 44555555553 222 13455789999999999888876777 66777789999995
No 37
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=45.00 E-value=28 Score=32.94 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=34.6
Q ss_pred Cc-HHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhh
Q 025188 107 ES-IADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ES-VAEHS~rvAliAllLa~~~-~vD~~Kvv~MALiHDL~Ea 146 (256)
++ +|.|++-|+-++.-+++.+ -+|.+-+..-+++||++=.
T Consensus 139 ~~gLa~ht~~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~ 180 (287)
T COG3481 139 EGGLAEHTLTVLELYKRISEIYPTVNRELIYAGAILHDIGKV 180 (287)
T ss_pred hcchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhccccc
Confidence 56 8999999988888888876 7999999999999999643
No 38
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=43.19 E-value=31 Score=36.39 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=25.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAE 145 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~E 145 (256)
|.--.|-..||.+ |++. +.|.+ .+.-||+||..|
T Consensus 43 ePYi~Hpl~VA~i---La~l-~~D~~-ti~AaLLHDvvE 76 (702)
T PRK11092 43 EPYITHPVAVACI---LAEM-RLDYE-TLMAALLHDVIE 76 (702)
T ss_pred CcHHHHHHHHHHH---HHHc-CCCHH-HHHHhcccchhh
Confidence 3335798887766 5554 68866 789999999999
No 39
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=39.94 E-value=60 Score=34.04 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=26.0
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAE 145 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~E 145 (256)
|.-..|-.+||.+ +++. +.|.+ .+.-||+||..|
T Consensus 18 ~PYi~Hpl~VA~i---L~~~-~~D~~-~i~AaLLHDvvE 51 (683)
T TIGR00691 18 EPYIIHPLAVALI---LAEL-GMDEE-TVCAALLHDVIE 51 (683)
T ss_pred CcHHHHHHHHHHH---HHHh-CCCHH-HHHHHhccchHh
Confidence 5557899998776 4543 67765 688999999988
No 40
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=39.83 E-value=2.3e+02 Score=30.10 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh---------hhhhcCCCCCCCCCh
Q 025188 111 DHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA---------EAIVGDITPSDGIPK 159 (256)
Q Consensus 111 EHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~---------Ea~tGDI~~~~~v~~ 159 (256)
-||--||-+|=..|+..|-|..=|-.-|.+||++ |=.+|+..+++..++
T Consensus 492 ~HSvmVAnLAEaAa~~IGan~lLaRVgayYHDIGK~~rP~~FiENQ~~g~N~Hd~lsP 549 (700)
T COG1480 492 QHSVMVANLAEAAAEEIGANSLLARVGAYYHDIGKMKRPLFFIENQMGGKNPHDDLSP 549 (700)
T ss_pred cchhhHHHHHHHHHHHhCCchHHHHHHHHHhhcccccCCccccccccCCCCCcccCCH
Confidence 5899999988888887799999999999999995 788999999886554
No 41
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=39.55 E-value=2.3e+02 Score=30.11 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCCCCCCcHHHHHHHHH---------HhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHh
Q 025188 70 GAAFSSSSSSVIDFLSL---------CHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIV 140 (256)
Q Consensus 70 ~~~~~~~~~~~~~Fl~~---------~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALi 140 (256)
...-..+++...-|+.. +.+|++|.=+ .+ -=|.+||+=|+-.+|-.+|+..|.|.+++..-|++
T Consensus 321 EKVlraRLsDA~FF~k~Dlk~~L~~~~~kL~~VtFh----~k---LGTl~dKv~Ri~~iA~~ia~~l~~d~~~~~rAa~l 393 (691)
T COG0751 321 EKVLRARLSDAEFFFKEDLKKPLESRLPKLKTVTFH----EK---LGTLADKVERIKKIAAYIAPQLGADVEDADRAALL 393 (691)
T ss_pred ceeeeeccchHHHHHhhhhcccHHHHHHhhceeeeh----Hh---cccHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33344566665555543 4555554321 11 24899999999999999999888888877666665
Q ss_pred --hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-------hCCcHHHHHHHHHHHHH
Q 025188 141 --HDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYE-------ENSTAEAKIVKDFDKAE 211 (256)
Q Consensus 141 --HDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE-------~~~T~EAklVK~aDkLe 211 (256)
-||.--.+|-.|--.++- -+-+..+..+ -.+-=..+.+.|- =-+|+.+.+|-.+|||+
T Consensus 394 ~KaDL~T~mV~EFpELQGiM------------G~~YA~~~Ge-~~~VA~Ai~EhY~Pr~~gd~lP~t~~g~~valADKLD 460 (691)
T COG0751 394 AKADLVTEMVGEFPELQGIM------------GEYYALHDGE-DEEVALAIEEHYLPRFAGDELPSTPVGAVVALADKLD 460 (691)
T ss_pred HhhhhhHhhhcCChhhhHHH------------HHHHHHHcCC-CHHHHHHHHHhcCCCCCCCCCCCchHHHHHHHHHHHH
Confidence 388777777665543321 2222222111 1111225566663 24678899999999999
Q ss_pred HHHHHH
Q 025188 212 MILQAV 217 (256)
Q Consensus 212 ~llQa~ 217 (256)
+++-++
T Consensus 461 TLvg~F 466 (691)
T COG0751 461 TLVGFF 466 (691)
T ss_pred HHHHHH
Confidence 999874
No 42
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=36.49 E-value=3.1e+02 Score=28.30 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=63.7
Q ss_pred CcHHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHh--hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcCCchhH
Q 025188 107 ESIADHMYRMGLMGLIMADIP-GIDRDKCIKMAIV--HDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARA 183 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~-~vD~~Kvv~MALi--HDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~ 183 (256)
=|+.|-+-|+.-+|-.++... +.|.+.+...|.+ .||.--.+|-.|--.++ |-..+.....+ .
T Consensus 353 Gtl~dK~~Ri~~la~~ia~~l~~~~~~~~~rAa~L~KaDL~T~mV~EFPELQGi------------MG~~YA~~~GE--~ 418 (548)
T PF02092_consen 353 GTLYDKTERIRKLARYIAEQLGEEDKEDAERAALLCKADLVTNMVGEFPELQGI------------MGRYYALADGE--S 418 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhhhcccccChHHHHH------------HHHHHHHHCCC--c
Confidence 489999999999999988876 6666666665555 68877677765443321 22223332111 1
Q ss_pred HHHH-HHHHHHh-------hCCcHHHHHHHHHHHHHHHHHHH
Q 025188 184 KEID-ELWMEYE-------ENSTAEAKIVKDFDKAEMILQAV 217 (256)
Q Consensus 184 ~ei~-~Lw~EyE-------~~~T~EAklVK~aDkLe~llQa~ 217 (256)
+++. .+.+.|. --+|+.+.+|--|||+++++-++
T Consensus 419 ~~VA~AI~EhY~P~~~~d~lP~t~~g~ilsiADKlDtl~g~F 460 (548)
T PF02092_consen 419 EEVALAIEEHYLPRFAGDELPSTPIGAILSIADKLDTLVGFF 460 (548)
T ss_pred hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1222 3444453 23689999999999999999885
No 43
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=35.57 E-value=1.3e+02 Score=26.91 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=64.0
Q ss_pred CCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCC-CCCCChHHHHHHHHHHHHHHHHhcCCch
Q 025188 103 VNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITP-SDGIPKEEKSQREREAITYMCKLLGQGA 181 (256)
Q Consensus 103 i~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~-~~~v~~~~K~~~E~~A~~~L~~lL~p~~ 181 (256)
+|. ||.--|+.-++-.--.+|..+|-|-+|.-...|+||+.=-++-|-+- +.-..-+. -+|..+-.++
T Consensus 43 v~~-e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~ei--L~~edv~eei-------- 111 (212)
T COG2316 43 VPS-ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEI--LREEDVSEEI-------- 111 (212)
T ss_pred CCc-HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceeh--HhhcCCCHHH--------
Confidence 565 99999998876554457777799999999999999997666533222 21111111 1111111111
Q ss_pred hHHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 025188 182 RAKEIDELWMEYE--ENSTAEAKIVKDFDKAEMILQAVEYEN 221 (256)
Q Consensus 182 ~~~ei~~Lw~EyE--~~~T~EAklVK~aDkLe~llQa~ey~~ 221 (256)
.+.++. ..+|- ..+|+-.+-.-++|-+.-++||..-.+
T Consensus 112 -l~ai~~-H~~~~~~~~et~~e~aL~AvD~~tGli~AaALir 151 (212)
T COG2316 112 -LDAIMG-HAAYTGTPRETRLEQALFAVDELTGLIQAAALIR 151 (212)
T ss_pred -HHHHHH-hhhhhcCCcccHHHHHHHhhccchhHHHHHHHhC
Confidence 111111 22332 246777778888999999999876654
No 44
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=35.31 E-value=84 Score=31.73 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=19.8
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHhhhhhh
Q 025188 115 RMGLMGLIMADIPGIDRDKCIKMAIVHDIAE 145 (256)
Q Consensus 115 rvAliAllLa~~~~vD~~Kvv~MALiHDL~E 145 (256)
+...-|++||+. +.| ..|+..+|+||..|
T Consensus 103 H~i~ta~iLAd~-~~d-s~Vv~AaiLHDVVD 131 (543)
T KOG1157|consen 103 HCIETAMILADI-GAD-STVVVAAILHDVVD 131 (543)
T ss_pred hHHHHHHHHHHh-hcc-hHHHHHHHHHHHHh
Confidence 344456678887 344 34667799999977
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=33.52 E-value=53 Score=35.49 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCH-HH-HHHHHHhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDR-DK-CIKMAIVHDIA 144 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~-~K-vv~MALiHDL~ 144 (256)
.+++.||.-.||-+|-.+|..+|+.. .+ +-.++++||++
T Consensus 673 ~q~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlG 713 (844)
T TIGR02621 673 EVALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLG 713 (844)
T ss_pred cEEHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 58999999999999999988776521 11 35799999996
No 46
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=30.42 E-value=36 Score=33.63 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHhHhccccccCccC---CCCCCCCcHHhHHHHHHHHHHHhccCCC------CCHH---HHHHHHHhhhhh
Q 025188 86 LCHRLKTTKRAGWVK---RNVNNPESIADHMYRMGLMGLIMADIPG------IDRD---KCIKMAIVHDIA 144 (256)
Q Consensus 86 ~~~~LK~i~R~Gw~~---~gi~~~ESVAEHS~rvAliAllLa~~~~------vD~~---Kvv~MALiHDL~ 144 (256)
+..||++|+=.|-.. .|.. -|==|||-.|--+|=.+.+..+ +|.+ -+..-||+||++
T Consensus 28 ~FQRLRrIkQLG~a~lvyPgAn--HTRFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 28 EFQRLRRIKQLGLAYLVYPGAN--HTRFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred HHHHHHHhhhccceeEecCCCc--ccccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 567777777776553 3322 4556999999888887666431 2211 356679999984
No 47
>PRK05007 PII uridylyl-transferase; Provisional
Probab=29.30 E-value=4.3e+02 Score=28.63 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCcHHhHHHHHHHHHHHhccC-C------------CC-CHHHHHHHHHhhhhhhhhhc
Q 025188 106 PESIADHMYRMGLMGLIMADI-P------------GI-DRDKCIKMAIVHDIAEAIVG 149 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~-~------------~v-D~~Kvv~MALiHDL~Ea~tG 149 (256)
..+|-+|+.++--.+--++.. . ++ +..-+..-||+||++-...|
T Consensus 459 ~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGKg~~~ 516 (884)
T PRK05007 459 AYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAKGRGG 516 (884)
T ss_pred cCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcCCCCC
Confidence 579999999986655433221 0 22 33334556789999885433
No 48
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=28.79 E-value=5e+02 Score=27.52 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=60.4
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHh--hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcCCchhHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIV--HDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAK 184 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALi--HDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ 184 (256)
=|+.|.+-|+.-+|-.+++..++|.+.+..-|.+ .||.--.+|-.|--.++ |-..+.....+ .+
T Consensus 356 Gs~~dK~~Ri~~La~~la~~l~~~~~~~~RAa~L~KaDL~T~mV~EFpELQGi------------MG~~YA~~~GE--~~ 421 (682)
T PRK01233 356 GTLYDKVERIRALAGYIAEQLGADAALAERAALLAKADLVTEMVGEFPELQGI------------MGRYYALHDGE--DE 421 (682)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhccchhhccChHhhHH------------HHHHHHHHCCC--CH
Confidence 4899999999999999998777776544333333 46766666654433221 22222332111 11
Q ss_pred HHH-HHHHHHh-------hCCcHHHHHHHHHHHHHHHHHHH
Q 025188 185 EID-ELWMEYE-------ENSTAEAKIVKDFDKAEMILQAV 217 (256)
Q Consensus 185 ei~-~Lw~EyE-------~~~T~EAklVK~aDkLe~llQa~ 217 (256)
++. .+.+.|- --+|+.+.+|--+|||+++.-++
T Consensus 422 ~VA~AI~EhY~P~~~~d~lP~t~~g~ilaiADKlDtL~g~F 462 (682)
T PRK01233 422 EVALAIEEHYLPRFAGDELPSTPVGAAVALADKLDTLVGIF 462 (682)
T ss_pred HHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 222 3444443 24678999999999999999874
No 49
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=28.22 E-value=6.1e+02 Score=25.26 Aligned_cols=35 Identities=3% Similarity=-0.216 Sum_probs=19.2
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
..+-+|++.+--.+--+. -|. .+--.||+||++-.
T Consensus 227 ~d~~~htl~~l~~~~~~~----~~l-~lR~AaLlHDiGK~ 261 (417)
T PRK13298 227 FNLGNYILMGLSKISKLT----KDI-DIRFSYLCQFLGSM 261 (417)
T ss_pred hhHHHHHHHHHHHHHhcC----CCH-HHHHHHHHhhhcCC
Confidence 467777775422221111 122 24557899999864
No 50
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=27.34 E-value=1e+02 Score=32.80 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCcHHhHHHHHHHHHHHhccC------------C-CCCHHHHHHH-HHhhhhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADI------------P-GIDRDKCIKM-AIVHDIAEAI 147 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~------------~-~vD~~Kvv~M-ALiHDL~Ea~ 147 (256)
..+|-+|+.++.-.+.-+... + +++...++.+ ||+||++-..
T Consensus 426 ~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg~ 481 (850)
T TIGR01693 426 VYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKGR 481 (850)
T ss_pred ecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcCC
Confidence 469999998875544433220 1 3333444444 8999999743
No 51
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.29 E-value=54 Score=32.52 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.9
Q ss_pred CCcHHhHHHHHHHHHHHhccCC-C---------C-CHHHHHHHHHhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIP-G---------I-DRDKCIKMAIVHDIA 144 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~-~---------v-D~~Kvv~MALiHDL~ 144 (256)
.-|=-.||..||-+|-.++... + . |..-+-.+||.|||+
T Consensus 56 ~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 56 YRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred CcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 4577899999999998766532 1 2 333355899999995
No 52
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=1e+02 Score=33.45 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHhHh-ccccccCc----cCCCCCCCCcHHhHHHHHHHHHHHhccCC-------------CC-CHHHHHH
Q 025188 76 SSSSVIDFLSLCHRL-KTTKRAGW----VKRNVNNPESIADHMYRMGLMGLIMADIP-------------GI-DRDKCIK 136 (256)
Q Consensus 76 ~~~~~~~Fl~~~~~L-K~i~R~Gw----~~~gi~~~ESVAEHS~rvAliAllLa~~~-------------~v-D~~Kvv~ 136 (256)
++...+.+|+..+-| +.+|=||. |++..-..=+|-||+-++..-.--++.-. ++ +++-.+.
T Consensus 409 ~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLyl 488 (867)
T COG2844 409 AIRRTLRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYL 488 (867)
T ss_pred cHHHHHHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHHHH
Confidence 445555555555555 34555644 33333336799999999876554444311 23 5577888
Q ss_pred HHHhhhhhhhhhcCCC
Q 025188 137 MAIVHDIAEAIVGDIT 152 (256)
Q Consensus 137 MALiHDL~Ea~tGDI~ 152 (256)
-||+||++=-.-||-.
T Consensus 489 AaLfHDIaKGRggDHs 504 (867)
T COG2844 489 AALFHDIAKGRGGDHS 504 (867)
T ss_pred HHHHHHhhcCCCCchH
Confidence 9999999998888853
No 53
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=25.39 E-value=40 Score=33.55 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=26.3
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC--CC------------H-HHHHHHHHhhhhh
Q 025188 106 PESIADHMYRMGLMGLIMADIPG--ID------------R-DKCIKMAIVHDIA 144 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~--vD------------~-~Kvv~MALiHDL~ 144 (256)
.-|=-+||-.|+-+|-.++...+ ++ . .=+-..||.|||+
T Consensus 59 ~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiG 112 (440)
T PRK01096 59 IHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIG 112 (440)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCC
Confidence 35678999999999886544221 11 1 2346689999984
No 54
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=22.38 E-value=2.9e+02 Score=26.52 Aligned_cols=66 Identities=11% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCCChHHHHHhhc
Q 025188 169 AITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEM-----ILQAVEYENEQGKDLEEFFQSTA 235 (256)
Q Consensus 169 A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~~l~ef~~~~~ 235 (256)
|++...+.. |+|.+.||..+.++-.-+.++++-+.+..+++.. +.-++.-+.++|.++.|..++..
T Consensus 158 Al~~~~~e~-~~Pl~~ef~~i~~~~~~G~~~~~a~~~~~er~p~~el~fl~ivi~iq~~~GGnL~e~l~~ls 228 (309)
T COG4965 158 ALRLAAKET-PEPLGTEFTLITDRQQLGIDLPAALLRMYERYPLEELYFLAIVISIQSRHGGNLSELLDNLS 228 (309)
T ss_pred HHHHHHhhC-CCchHHHHHHHHHHHHcCCChhHHHHHHHHhCCchhHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 444444555 7889999999999999999999999999887521 23334444466778999887753
No 55
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=22.16 E-value=7.5e+02 Score=24.21 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=22.2
Q ss_pred CC-cHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhc
Q 025188 106 PE-SIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVG 149 (256)
Q Consensus 106 ~E-SVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tG 149 (256)
+| +|-+|+..+--.+--+.. + ..+--.||+||++-..++
T Consensus 224 ~e~dv~~Htl~~l~~~~~l~~----~-l~lr~AaLlHDlGK~~t~ 263 (409)
T PRK10885 224 PEIDTGIHTLMVLDQAAKLSP----S-LDVRFAALCHDLGKGLTP 263 (409)
T ss_pred CCCcHHHHHHHHHHHHHhcCC----C-HHHHHHHHhccccCCCCC
Confidence 44 889998654221111111 1 235567899999886643
No 56
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=21.61 E-value=3.8e+02 Score=24.14 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHhHhcccc-ccCccCCCCCCCC---cHH------hHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhh
Q 025188 74 SSSSSSVIDFLSLCHRLKTTK-RAGWVKRNVNNPE---SIA------DHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDI 143 (256)
Q Consensus 74 ~~~~~~~~~Fl~~~~~LK~i~-R~Gw~~~gi~~~E---SVA------EHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL 143 (256)
...++...+.+..+.+|.... ++.|...++|+|+ +.+ +|..-+..+| +.-.|.|.+
T Consensus 44 ~~~~~~~~~~~~~a~~ll~~~~~~~w~p~~iP~P~~~~~~~~~~~~~~~~n~l~~~A--------------~~fil~HE~ 109 (206)
T PF10463_consen 44 EELLQKAMDLFSWARSLLENFEFTSWDPEDIPNPEDFDDISPETVYGEKANDLFCCA--------------IAFILLHEL 109 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccCcccCCCcccccccccchhhHHHHHHHHHHH--------------HHHHHHHHH
Confidence 345666677677777776654 7888667899987 555 4544444433 334678888
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHH
Q 025188 144 AEAIVGDITPSDGIPKEEKSQRERE 168 (256)
Q Consensus 144 ~Ea~tGDI~~~~~v~~~~K~~~E~~ 168 (256)
+=+..|-.-.. ....+.+.|.+
T Consensus 110 ~Hv~~~h~~~~---~~~~~~~eE~~ 131 (206)
T PF10463_consen 110 AHVVLGHEGDS---SPSQSIQEEKE 131 (206)
T ss_pred HHHHHcCcccc---ccchhHHHHHh
Confidence 88888776553 33344444544
No 57
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=21.36 E-value=2.4e+02 Score=28.68 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=36.7
Q ss_pred HhHhccccccCccCCCCCC-CCcHHhHHHHHHHHHHHhccCC--------C---CCHHHHHHHHHhhhhhh
Q 025188 87 CHRLKTTKRAGWVKRNVNN-PESIADHMYRMGLMGLIMADIP--------G---IDRDKCIKMAIVHDIAE 145 (256)
Q Consensus 87 ~~~LK~i~R~Gw~~~gi~~-~ESVAEHS~rvAliAllLa~~~--------~---vD~~Kvv~MALiHDL~E 145 (256)
..||++++-.|...-=.|. .-|=-+||-.+-.+|..+.... + .|..-+=..+|+||++-
T Consensus 51 FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGH 121 (498)
T KOG2681|consen 51 FQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGH 121 (498)
T ss_pred HHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 4556666666544211122 3677899999999998765421 3 34444455789999963
Done!