Query 025188
Match_columns 256
No_of_seqs 133 out of 852
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dmb_A HD domain-containing pr 100.0 1E-54 3.5E-59 381.9 18.7 181 73-255 10-192 (204)
2 1ynb_A Hypothetical protein AF 100.0 4.4E-47 1.5E-51 326.0 7.3 163 74-256 4-169 (173)
3 3kh1_A Predicted metal-depende 100.0 1.7E-45 5.7E-50 322.4 16.2 176 75-253 8-191 (200)
4 1xx7_A Oxetanocin-like protein 100.0 1.5E-46 5.1E-51 324.8 9.2 167 79-256 8-183 (184)
5 2cqz_A 177AA long hypothetical 100.0 4.7E-44 1.6E-48 305.9 12.3 168 77-255 1-177 (177)
6 2paq_A 5'-deoxynucleotidase YF 100.0 1.1E-39 3.6E-44 284.8 13.6 169 80-252 5-186 (201)
7 3mzo_A LIN2634 protein; HD-dom 100.0 4.5E-37 1.5E-41 271.5 20.1 169 79-251 3-187 (216)
8 2gz4_A Hypothetical protein AT 99.9 6.8E-28 2.3E-32 212.0 9.3 135 79-232 27-164 (207)
9 3b57_A LIN1889 protein; Q92AN1 98.5 1E-06 3.5E-11 75.8 11.5 133 107-250 24-184 (209)
10 3dto_A BH2835 protein; all alp 98.3 4.2E-06 1.4E-10 73.5 11.9 132 107-249 24-195 (223)
11 3djb_A Hydrolase, HD family; a 98.3 1.1E-05 3.9E-10 70.7 12.9 132 107-249 24-195 (223)
12 2qgs_A Protein Se1688; alpha-h 98.2 2.5E-05 8.5E-10 68.0 12.9 132 107-250 24-197 (225)
13 3gw7_A Uncharacterized protein 98.1 2.8E-06 9.7E-11 75.5 6.4 133 109-249 26-196 (239)
14 2pjq_A Uncharacterized protein 98.1 1.6E-05 5.5E-10 69.6 10.9 133 107-250 29-202 (231)
15 2pq7_A Predicted HD superfamil 98.0 5.6E-05 1.9E-09 65.0 11.0 138 106-250 31-202 (220)
16 3tm8_A BD1817, uncharacterized 97.4 0.0012 4.2E-08 60.3 11.3 138 107-249 165-324 (328)
17 2hek_A Hypothetical protein; p 97.2 0.0011 3.6E-08 62.4 9.0 146 86-234 27-189 (371)
18 3hc1_A Uncharacterized HDOD do 96.5 0.017 5.8E-07 51.8 10.3 109 106-215 116-245 (305)
19 2o08_A BH1327 protein; putativ 95.6 0.0063 2.1E-07 51.0 2.9 40 107-146 17-56 (188)
20 3ccg_A HD superfamily hydrolas 95.5 0.0068 2.3E-07 50.9 2.9 41 107-147 18-58 (190)
21 2ogi_A Hypothetical protein SA 95.4 0.0076 2.6E-07 51.0 2.9 40 107-146 25-64 (196)
22 2dqb_A Deoxyguanosinetriphosph 94.2 0.33 1.1E-05 45.7 10.9 58 86-144 54-111 (376)
23 2q14_A Phosphohydrolase; BT420 92.7 1.2 4.1E-05 42.3 12.2 142 84-233 30-190 (410)
24 3m1t_A Putative phosphohydrola 90.8 0.15 5.1E-06 45.0 3.4 43 107-149 104-146 (275)
25 3ljx_A MMOQ response regulator 89.7 0.32 1.1E-05 43.2 4.6 44 107-150 107-151 (288)
26 3nr1_A HD domain-containing pr 89.2 5.8 0.0002 33.2 11.9 98 107-215 29-128 (178)
27 3nqw_A CG11900; stringent resp 86.1 7.5 0.00026 32.5 10.7 118 76-215 8-130 (179)
28 3i7a_A Putative metal-dependen 84.2 0.63 2.2E-05 40.9 3.3 42 107-148 116-164 (281)
29 1vqr_A Hypothetical protein CJ 81.4 0.86 2.9E-05 40.3 3.0 44 107-150 123-167 (297)
30 3mem_A Putative signal transdu 77.7 2 6.7E-05 40.8 4.4 44 106-149 276-323 (457)
31 1vj7_A Bifunctional RELA/SPOT; 72.5 15 0.0005 34.7 8.9 35 107-146 48-82 (393)
32 3irh_A HD domain protein; phos 52.7 19 0.00066 34.9 5.7 136 85-234 62-235 (480)
33 2ibn_A Inositol oxygenase; red 44.8 23 0.00077 31.7 4.5 44 107-154 58-111 (250)
34 3u1n_A SAM domain and HD domai 43.1 30 0.001 34.0 5.4 58 85-144 41-111 (528)
35 3kq5_A Hypothetical cytosolic 40.0 25 0.00086 33.3 4.2 42 106-147 73-119 (393)
36 3sk9_A Putative uncharacterize 34.6 26 0.0009 30.9 3.3 41 106-146 23-79 (265)
37 2q73_A MAZG, hypothetical prot 28.1 1.3E+02 0.0043 22.2 5.7 61 79-139 23-85 (100)
38 3bg2_A DGTP triphosphohydrolas 24.1 49 0.0017 31.6 3.3 59 85-144 42-119 (444)
No 1
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=100.00 E-value=1e-54 Score=381.91 Aligned_cols=181 Identities=48% Similarity=0.814 Sum_probs=171.9
Q ss_pred CCCCcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCC
Q 025188 73 FSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT 152 (256)
Q Consensus 73 ~~~~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~ 152 (256)
....++++++|+.++++||+++||||+.+|++++|||||||||||+||+++++. ++|++||++|||+||++|++||||+
T Consensus 10 ~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~~-~vD~~r~~~maL~HDl~E~~tGDit 88 (204)
T 4dmb_A 10 SGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDD-RLNKDRCVRLALVHDMAECIVGDIA 88 (204)
T ss_dssp ---CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCCT-TSCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred cccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHhcchHHhhcCCCc
Confidence 345789999999999999999999999999977899999999999999999975 6999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHH
Q 025188 153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGK--DLEEF 230 (256)
Q Consensus 153 ~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~--~l~ef 230 (256)
|+++++++.|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||++++||++|++.||. ++++|
T Consensus 89 p~k~~~~~~k~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~f 167 (204)
T 4dmb_A 89 PADNIPKEEKHRREEEAMKQITQLL-PEDLRKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDF 167 (204)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHH
T ss_pred cccccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHH
Confidence 8888899999999999999999999 88899999999999999999999999999999999999999999998 99999
Q ss_pred HHhhcccccCHHHHHHHHHHHHhhc
Q 025188 231 FQSTAGKFQTELGKAWAAEIVSRRK 255 (256)
Q Consensus 231 ~~~~~~~i~t~~~k~~~~~i~~~r~ 255 (256)
|.++.++|+||.+++|+++|+++|+
T Consensus 168 f~~~~~~~~~~~~~~~~~~l~~~r~ 192 (204)
T 4dmb_A 168 YDSTAGKFNHPEIVQLVSELEAERS 192 (204)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999996
No 2
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=100.00 E-value=4.4e-47 Score=326.01 Aligned_cols=163 Identities=26% Similarity=0.344 Sum_probs=147.1
Q ss_pred CCCcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCH---HHHHHHHHhhhhhhhhhcC
Q 025188 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR---DKCIKMAIVHDIAEAIVGD 150 (256)
Q Consensus 74 ~~~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~---~Kvv~MALiHDL~Ea~tGD 150 (256)
..++.++++|+.++++||+++||||+.+|+.++||||||||+||+||+++++..|+|+ +||++|||+||++|++|||
T Consensus 4 ~~~~~~~~~Fl~~~~~LK~i~R~gw~~~gv~~~EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~~~GD 83 (173)
T 1ynb_A 4 IKPMDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMD 83 (173)
T ss_dssp ---CHHHHHHHHHHHGGGGSBCGGGGGGTCSSCCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCC
T ss_pred hHhHHHHHHHHHHHHHhccCccCCcccCCCCCCCcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHhhccC
Confidence 3478899999999999999999999999987789999999999999999998669999 9999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 025188 151 ITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEF 230 (256)
Q Consensus 151 I~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef 230 (256)
|+++++.... +.|++|++++++.| +|.+||.|||+ |||++|||++++||++|++. |.++++|
T Consensus 84 i~~~~k~~~~---~~E~~a~~~l~~~L-------e~~~Lw~Eye~-------~vk~~Dkle~llq~~ey~~~-~~~~~~f 145 (173)
T 1ynb_A 84 LHKIARRYVS---CDEEGAREEQLSWM-------ESKPDFSDVEV-------YVSDADKLELAFQGVEYSQQ-VSYAIRF 145 (173)
T ss_dssp CCTTGGGTCC---CCHHHHHHHHTTTC-------SSCCCCGGGHH-------HHHHHHHHHHHHHHHHHTTT-CGGGGGG
T ss_pred CCcccccccc---HHHHHHHHHHHHhh-------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh-cccHHHH
Confidence 9888642222 56888999988776 58899999986 99999999999999999999 8999999
Q ss_pred HHhhcccccCHHHHHHHHHHHHhhcC
Q 025188 231 FQSTAGKFQTELGKAWAAEIVSRRKK 256 (256)
Q Consensus 231 ~~~~~~~i~t~~~k~~~~~i~~~r~~ 256 (256)
|+++ +|+||.+|+|+++|+++|+.
T Consensus 146 ~~~~--~~~t~~~~~~~~~i~~~~~~ 169 (173)
T 1ynb_A 146 AENV--ELKTDAAKEIYRVLMERKNP 169 (173)
T ss_dssp GSSC--CCCSHHHHHHHHHHHHHCCC
T ss_pred HHHh--hccCHHHHHHHHHHHHhhHH
Confidence 9987 99999999999999999863
No 3
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=100.00 E-value=1.7e-45 Score=322.42 Aligned_cols=176 Identities=26% Similarity=0.404 Sum_probs=158.1
Q ss_pred CCcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC--CCCHHHHHHHHHhhhhhhhhhcCCC
Q 025188 75 SSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP--GIDRDKCIKMAIVHDIAEAIVGDIT 152 (256)
Q Consensus 75 ~~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~--~vD~~Kvv~MALiHDL~Ea~tGDI~ 152 (256)
.+++++++|+.++++||+++||||+.++. ++|||||||||||+||+++++.. ++|++||++|||+||++|++||||+
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~-r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~ 86 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSS-RRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTF 86 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSS-SEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCC-CCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCcc
Confidence 36899999999999999999999986654 47999999999999999999876 5999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHH----hcCCChH
Q 025188 153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN----EQGKDLE 228 (256)
Q Consensus 153 ~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~----~gn~~l~ 228 (256)
++++..+..|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||++++||++|.+ .+|...+
T Consensus 87 ~~~~~~~~~~~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~~lqa~~~~g~~w~~~gv~~~ 165 (200)
T 3kh1_A 87 IHDEAGNEDKEERERKAAARLFGLL-PPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRA 165 (200)
T ss_dssp TTCCC---CHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCBHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCccHH
Confidence 9988878889999999999999999 8899999999999999999999999999999999999999975 4688999
Q ss_pred HHHHhhccccc--CHHHHHHHHHHHHh
Q 025188 229 EFFQSTAGKFQ--TELGKAWAAEIVSR 253 (256)
Q Consensus 229 ef~~~~~~~i~--t~~~k~~~~~i~~~ 253 (256)
+|++. ..+++ .|..-+|+.++++.
T Consensus 166 q~~~~-~~~i~~~~~~lw~~~~~~~~~ 191 (200)
T 3kh1_A 166 KVDKL-LPRIEAGSKRLGAYARALVDE 191 (200)
T ss_dssp HHHHH-HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHH-hHHHhhcCHHHHHHHHHHHHH
Confidence 99975 56777 77888888887754
No 4
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=100.00 E-value=1.5e-46 Score=324.83 Aligned_cols=167 Identities=35% Similarity=0.561 Sum_probs=150.1
Q ss_pred HHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC-----CCCCHHHHHHHHHhhhhhhhhhcCCCC
Q 025188 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCIKMAIVHDIAEAIVGDITP 153 (256)
Q Consensus 79 ~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~-----~~vD~~Kvv~MALiHDL~Ea~tGDI~~ 153 (256)
...+|+.++++||+++||||+.+|++++||||||||+||+||+++++. .++|++||++|||+||++|++|||||.
T Consensus 8 ~~~~Fl~~~~~Lk~v~R~~~~~~gv~~~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~~GDip~ 87 (184)
T 1xx7_A 8 GSIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPL 87 (184)
T ss_dssp -CHHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCH
T ss_pred CHHHHHHHHHHhccCcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhhcCCCCC
Confidence 457899999999999999999888867899999999999999999975 489999999999999999999999944
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 025188 154 SDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQS 233 (256)
Q Consensus 154 ~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~~ 233 (256)
.......++++|++++++++ ++|.+||.||++.+|+||++||++|||++++||++|.+.||.++++|+.+
T Consensus 88 -~~~~~~~~~~~E~~a~~~ll---------~e~~~l~~eye~~~t~Ea~~vK~aDkl~a~lqa~~~~~~g~~~~~~~~~~ 157 (184)
T 1xx7_A 88 -SAQKYLNKEEAEAKALKDVL---------PEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNA 157 (184)
T ss_dssp -HHHTTSCHHHHHHHHHHHHC---------GGGHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGH
T ss_pred -cccchHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHH
Confidence 33344567889999999883 46889999999999999999999999999999999999999999999998
Q ss_pred hccccc----CHHHHHHHHHHHHhhcC
Q 025188 234 TAGKFQ----TELGKAWAAEIVSRRKK 256 (256)
Q Consensus 234 ~~~~i~----t~~~k~~~~~i~~~r~~ 256 (256)
.. +++ ||.+|+|+++|+++|++
T Consensus 158 ~~-~l~~~~~t~~~~~l~~~i~~~r~~ 183 (184)
T 1xx7_A 158 LE-DLEKLEISRYLREIIEEVRRLKDD 183 (184)
T ss_dssp HH-HHTTSGGGGGCHHHHHHHHHC---
T ss_pred HH-HHHhccCCHHHHHHHHHHHHHhhc
Confidence 87 999 99999999999999975
No 5
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.7e-44 Score=305.89 Aligned_cols=168 Identities=36% Similarity=0.568 Sum_probs=150.8
Q ss_pred cHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC-----CCCCHHHHHHHHHhhhhhhhhhcCC
Q 025188 77 SSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCIKMAIVHDIAEAIVGDI 151 (256)
Q Consensus 77 ~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~-----~~vD~~Kvv~MALiHDL~Ea~tGDI 151 (256)
++++++|+.++++||+++||||+.+|++++||||+||||||++|+.++.. .++|+.+|+.|||+||++|+++||+
T Consensus 1 ~~~~~~F~~~~~~Lk~i~R~~~~~~g~~~~esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~~GD~ 80 (177)
T 2cqz_A 1 MKVMIEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDI 80 (177)
T ss_dssp ---CHHHHHHHGGGGTSBCHHHHHTTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCC
T ss_pred CchHHHHHHHHHHhccCccCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHcCCC
Confidence 35678999999999999999999999877899999999999999999975 4899999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 025188 152 TPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFF 231 (256)
Q Consensus 152 ~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~ 231 (256)
|........++..|..+++++ | ++|..+|.||++..|+||++||++|||++++||++|.+.||..+++|+
T Consensus 81 -p~~~~~~~~~~~~E~~a~~~~---l------~~i~~l~~ef~~~~t~Ea~~vk~aDrL~a~l~a~~~~~~~~~~~~~f~ 150 (177)
T 2cqz_A 81 -PLSAQEFVDKDKAEALVFKKV---F------PEFYELYREYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFW 150 (177)
T ss_dssp -CTTTTTTSCHHHHHHHHHHHT---C------GGGHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGG
T ss_pred -ccccccHHHHHHHHHHHHHHH---H------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHH
Confidence 444444567788999999887 3 467899999999999999999999999999999999999999999999
Q ss_pred Hhhccccc----CHHHHHHHHHHHHhhc
Q 025188 232 QSTAGKFQ----TELGKAWAAEIVSRRK 255 (256)
Q Consensus 232 ~~~~~~i~----t~~~k~~~~~i~~~r~ 255 (256)
++.. +++ |+.+|+|+++|+++|+
T Consensus 151 ~kl~-~l~~~~~t~~~k~~a~~i~~~r~ 177 (177)
T 2cqz_A 151 EAIE-EIKRLELSKYLEDILNSVGRLKA 177 (177)
T ss_dssp GHHH-HHHTSGGGGGGHHHHHHHHTTC-
T ss_pred HHHH-HHHhccCCHHHHHHHHHHHHhcC
Confidence 9877 788 9999999999999985
No 6
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=100.00 E-value=1.1e-39 Score=284.80 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=143.4
Q ss_pred HHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhc----cCC--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 025188 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA----DIP--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (256)
Q Consensus 80 ~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa----~~~--~vD~~Kvv~MALiHDL~Ea~tGDI~~ 153 (256)
+++|+.++++||+++||||+ +|++ +||||+|||+||+||++++ ..+ ++|++||++|||+||++|+++|||+.
T Consensus 5 ~~~f~~~~~rLK~i~R~~~~-~~~~-~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~ 82 (201)
T 2paq_A 5 QSHFFAHLSRLKLINRWPLM-RNVR-TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPT 82 (201)
T ss_dssp CCCHHHHHGGGGGCBSCTTS-CCSS-CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCC
T ss_pred HHHHHHHHHhhccCccCCCC-CCCC-CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCc
Confidence 45799999999999999998 6675 5999999999999999998 443 79999999999999999999999976
Q ss_pred CCC----CChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 025188 154 SDG----IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEE 229 (256)
Q Consensus 154 ~~~----v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~e 229 (256)
+.+ .....+++.|+++++.+++.| |++++++|..+|.||| .+|+||++||++|+|++++||++|.+.||..+..
T Consensus 83 p~k~~~~~~~~~~~~~E~~~~~~i~~~L-p~~~~~e~~~l~~e~e-~~t~ea~lvk~aD~l~a~lqa~e~~~~Gn~ef~~ 160 (201)
T 2paq_A 83 PVKYFNSQIAQEYKAIEKIAQQKLVDMV-PEELRDIFAPLIDEHA-YSDEEKSLVKQADALCAYLKCLEELAAGNNEFLL 160 (201)
T ss_dssp C---------CTHHHHHHHHHHHHHTTS-CGGGHHHHHHHHTTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred hHhhhchHHHHHhcccHHHHHHHHHHhC-CHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 553 223456789999999999999 8899999999999997 6999999999999999999999999999875544
Q ss_pred HHHhh---cccccCHHHHHHHHHHHH
Q 025188 230 FFQST---AGKFQTELGKAWAAEIVS 252 (256)
Q Consensus 230 f~~~~---~~~i~t~~~k~~~~~i~~ 252 (256)
..... ....++|.++.|++.++-
T Consensus 161 a~~~~~~~l~~~~~~~v~~f~~~~~p 186 (201)
T 2paq_A 161 AKTRLEATLEARRSQEMDYFMEIFVP 186 (201)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44332 223578999999998753
No 7
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=100.00 E-value=4.5e-37 Score=271.50 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=138.0
Q ss_pred HHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC---C--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 025188 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI---P--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (256)
Q Consensus 79 ~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~---~--~vD~~Kvv~MALiHDL~Ea~tGDI~~ 153 (256)
++.+|+.++++||+|+||+|+. +. ++||||||||+||+||++|+.. . ++|++||++|||+||++|++||||++
T Consensus 3 ~~~~Fl~~~~rLK~i~Rw~~~~-~~-~~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~t 80 (216)
T 3mzo_A 3 GIHQYFQSLSDLENIYRCPGKF-KY-QEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKT 80 (216)
T ss_dssp SHHHHHHHHHHGGGCBSSCSSC-CS-SCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCS
T ss_pred cHHHHHHHHHhcCcccCcCCCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCc
Confidence 4789999999999999999996 44 4699999999999999999842 2 69999999999999999999999987
Q ss_pred CCCC-Ch---HHHHHHHHHHHHHH-HHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Q 025188 154 SDGI-PK---EEKSQREREAITYM-CKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD-- 226 (256)
Q Consensus 154 ~~~v-~~---~~K~~~E~~A~~~L-~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~-- 226 (256)
|.+. .+ ..++++|+++++++ ++.| |++++++|.++|.|+ +.+|+||++||++|||++++||.+|++.||..
T Consensus 81 Pvk~~~~~~~~~~~~~E~~a~~~li~~~L-P~~~~~~~~~~~~e~-~~~t~ea~~vK~aDkl~~~lqa~~~~~~Gn~e~~ 158 (216)
T 3mzo_A 81 PVKYATTELREMLSEVEESMTKNFISREI-PATFQPIYRHLLKEG-KDSTLEGKILAISDKVDLLYESFGEIQKGNPENI 158 (216)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHSCC-CSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTH
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 7753 33 33568899999985 4999 888999999999984 67999999999999999999999999999976
Q ss_pred hHHHHH----hhcccccCHHHHHHHHHHH
Q 025188 227 LEEFFQ----STAGKFQTELGKAWAAEIV 251 (256)
Q Consensus 227 l~ef~~----~~~~~i~t~~~k~~~~~i~ 251 (256)
+.+-++ .....-..|.++...+.++
T Consensus 159 f~~~~~~~~~~~~~~~~~p~v~~fl~~~~ 187 (216)
T 3mzo_A 159 FVEIYSEALATIYEYREMASVKYFLKEIL 187 (216)
T ss_dssp HHHHHHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 333222 2222224667776665543
No 8
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=99.95 E-value=6.8e-28 Score=212.05 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=110.4
Q ss_pred HHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCC-C
Q 025188 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDG-I 157 (256)
Q Consensus 79 ~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~-v 157 (256)
..++|..++++||++.||||..+|++ +||||||||+||+||++++. ++| .|++.|||+||++|+++|||+.+.+ .
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~-~eSVAeHS~~va~ia~~l~~--~~~-~r~~~~aL~HD~~E~~~GDi~tPvK~~ 102 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDH-AFTVAQHCLIVETIFCRMCP--GAT-PDEMQMALLHDAPEYVIGDMISPFKSV 102 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSS-CCBHHHHHHHHHHHHHHHCT--TCC-HHHHHHHHTTTTTHHHHCCCCGGGGGT
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCC-CccHHHHHHHHHHHHHHHCC--CCC-HHHHHHHHhcCchHhhccCCChHhhhh
Confidence 45689999999999999999988865 59999999999999999974 688 6899999999999999999988775 2
Q ss_pred ChHHHHHHHHHHHHHHHH--hcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 025188 158 PKEEKSQREREAITYMCK--LLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQ 232 (256)
Q Consensus 158 ~~~~K~~~E~~A~~~L~~--lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~ 232 (256)
-...+++.|+++++.|+. .| |+ ...+.|+++||++||+++++||.+|.+-...+..+||.
T Consensus 103 l~~~yk~iE~~~~~~i~~~f~L-p~--------------~~~~~e~~lVK~aDkl~a~lea~~~~g~~~~e~~~~~~ 164 (207)
T 2gz4_A 103 VGGGYKTVEKRLEAAVHLRFGL-PP--------------HASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFG 164 (207)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC-CS--------------SCCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhcCC-CC--------------CCChHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHcC
Confidence 235677899999999888 56 43 44668999999999999999999763211123334664
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=98.49 E-value=1e-06 Score=75.85 Aligned_cols=133 Identities=21% Similarity=0.263 Sum_probs=84.7
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
...-+|+.+|+-+|..++...+.|++.+...||+||+ |+...... ... -.+.+.+++..++ |++..+.
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDi-----g~~~~~~~---~~~---~a~~a~~~L~~~g~~~~~~~~ 92 (209)
T 3b57_A 24 GHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDY-----SDIKLTTD---EQE---ATKTLINWMETKEIPSELIKK 92 (209)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTC-----CC----------CH---HHHHHHHHHHHTTCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc-----CcccCCCc---hHH---HHHHHHHHHHHCCCCHHHHHH
Confidence 4568999999999999887668999999999999998 55433221 111 1122334444442 4444445
Q ss_pred HHHHHHH--Hh------hCCcHHHHHHHHHHHHHHH-----HHHHHHHHhcCC-----------ChHHHHHh---hcccc
Q 025188 186 IDELWME--YE------ENSTAEAKIVKDFDKAEMI-----LQAVEYENEQGK-----------DLEEFFQS---TAGKF 238 (256)
Q Consensus 186 i~~Lw~E--yE------~~~T~EAklVK~aDkLe~l-----lQa~ey~~~gn~-----------~l~ef~~~---~~~~i 238 (256)
+..+... |. ...|+|+++|.++|+|+.+ ..+..|.+.-+. .++.|++. ....+
T Consensus 93 V~~~I~~Hs~~~~~~~~~~~~~ea~iv~dAD~LDalgaigiaR~~~y~g~~~~~~~~~~~~~~~~i~hf~ekl~~l~~~~ 172 (209)
T 3b57_A 93 IIRIIQSVSFKKGKNTFKALTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANQNNPKNTTLQHFYDKLLLIKDQL 172 (209)
T ss_dssp HHHHHHHHC---------CCCHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTTCCSCCCC-CCSCHHHHHHHTHHHHHHHC
T ss_pred HHHHHHHcCccccCCCCCCCCHHHHHHcCHHHHhHHHhHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHHHHHHHC
Confidence 5555433 22 2369999999999999964 456777553221 24566553 45579
Q ss_pred cCHHHHHHHHHH
Q 025188 239 QTELGKAWAAEI 250 (256)
Q Consensus 239 ~t~~~k~~~~~i 250 (256)
+|+.+|+++++-
T Consensus 173 ~T~~gr~~a~~r 184 (209)
T 3b57_A 173 NTETAKTIAKEK 184 (209)
T ss_dssp CCHHHHHTTHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998765
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=98.34 E-value=4.2e-06 Score=73.55 Aligned_cols=132 Identities=20% Similarity=0.317 Sum_probs=85.6
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
.-.-+|+.||+-+|..++...++|.+.+...||+||++-.. ... .+... ...+.+++..++ |++..+.
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k-----~~~---~~~~g---a~~a~~~L~~~g~~~~~i~~ 92 (223)
T 3dto_A 24 GHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK-----LVD---DPETA---KQQLIDWMEAAGVPSQKIDH 92 (223)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC---------------CHH---HHHHHHHHHTTTCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc-----cCC---CHHHH---HHHHHHHHHHcCCCHHHHHH
Confidence 45679999999999998876789999999999999997321 111 11111 112334444443 4444555
Q ss_pred HHHHHHH--Hh-----hCCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCC------------------------ChHH
Q 025188 186 IDELWME--YE-----ENSTAEAKIVKDFDKAEM-----ILQAVEYENEQGK------------------------DLEE 229 (256)
Q Consensus 186 i~~Lw~E--yE-----~~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~------------------------~l~e 229 (256)
+..+... |. .-.|+|+++|.++|+|++ +..++.|.+..|. .++-
T Consensus 93 V~~~I~~Hs~~~~~~~~p~tlEa~IV~dADrLDalGaiGiaR~f~~~g~~~~~~~~p~~~~~~~~~~~~yr~~~~~~i~H 172 (223)
T 3dto_A 93 TMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINH 172 (223)
T ss_dssp HHHHHHCC----------CCHHHHHHHHHHHGGGSSHHHHHHHHHHHHHHTCCSCCTTSCCCCC--SHHHHTCCCCHHHH
T ss_pred HHHHHHHcCCccCCCCCCCCHHHHHHHhHHHHHHHHhhHHHHHHHHHHHcCCcccCccccccccccHHHhhccchhHHHH
Confidence 6555543 22 246999999999999994 6778888875322 1334
Q ss_pred HHHh---hcccccCHHHHHHHHH
Q 025188 230 FFQS---TAGKFQTELGKAWAAE 249 (256)
Q Consensus 230 f~~~---~~~~i~t~~~k~~~~~ 249 (256)
|++. ....++|+.+|++|++
T Consensus 173 f~eKLl~l~~~m~T~~gr~~A~~ 195 (223)
T 3dto_A 173 FYEKLFKLKDLMNTETGKQLAKE 195 (223)
T ss_dssp HHHTGGGCTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHH
Confidence 5553 3457899999999875
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=98.26 E-value=1.1e-05 Score=70.72 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=84.7
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
.-.-+|+.||+-+|..++...++|++.+...||+||++-...+| ..... ...+.+++..++ |++..+.
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k~~~---h~~~g--------a~~a~~~L~~~g~~~~~i~~ 92 (223)
T 3djb_A 24 GHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNE---SEEAG--------MKKVSDWLEELHVEEEESKH 92 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCS---SSTTT--------HHHHHHHHHHTCCCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccccCC---cHHHH--------HHHHHHHHHHCCCCHHHHHH
Confidence 45689999999999999887789999999999999997422211 11111 111223333332 4444455
Q ss_pred HHHHHHH--Hh-----hCCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCC------------------------ChHH
Q 025188 186 IDELWME--YE-----ENSTAEAKIVKDFDKAEM-----ILQAVEYENEQGK------------------------DLEE 229 (256)
Q Consensus 186 i~~Lw~E--yE-----~~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~------------------------~l~e 229 (256)
+..+... |. ...|+|+++|.++|+|++ +..++.|.+..|. .++-
T Consensus 93 V~~~I~~Hs~~~~~~~~p~tlea~iV~dADrLDalGaiGiaR~f~~~g~~~~~l~~~~~~~~~~~~~~~y~~~~~~~i~H 172 (223)
T 3djb_A 93 VLHIIANMSYKGGHGGKVESIEGKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPREVMTKDEYRKNNDPSLNH 172 (223)
T ss_dssp HHHHTTCCC-----------HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHTCCSCCTTSCCC------------CCTTHH
T ss_pred HHHHHHHhCCccCCCCCCCCHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhCCcccCCcccccccccHHHHhccchhHHHH
Confidence 5544432 21 146899999999999994 6778888875322 2334
Q ss_pred HHHh---hcccccCHHHHHHHHH
Q 025188 230 FFQS---TAGKFQTELGKAWAAE 249 (256)
Q Consensus 230 f~~~---~~~~i~t~~~k~~~~~ 249 (256)
|++. ....++|+.+|++|++
T Consensus 173 f~eKLl~L~~~m~T~~gr~~A~~ 195 (223)
T 3djb_A 173 FYEKLLKLKDLMNTNAAKQEAEV 195 (223)
T ss_dssp HHHHTGGGTTSCCSHHHHHHHHH
T ss_pred HHHHHHhHHHHccCHHHHHHHHH
Confidence 6653 3567999999999875
No 12
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=98.17 E-value=2.5e-05 Score=68.01 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=86.7
Q ss_pred CcHHhHHHHHHHHHHHh-ccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHH
Q 025188 107 ESIADHMYRMGLMGLIM-ADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (256)
Q Consensus 107 ESVAEHS~rvAliAllL-a~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~ 184 (256)
.-.-+|+.+|+-.|..+ +...++|.+.+...||+||++-.. .. + ... -...+..++..++ |.+..+
T Consensus 24 ~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~~------~~--~-~~~---ga~~a~~~L~~~g~~~~~i~ 91 (225)
T 2qgs_A 24 GHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSK------LT--D-EIL---AYDQLKQFLSTLDLSSEISQ 91 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCS------SS--C-HHH---HHHHHHHHHHTTTCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCCC------CC--c-HHH---HHHHHHHHHHHCCCCHHHHH
Confidence 55789999999999988 877689999999999999987421 11 1 111 1122334445443 444455
Q ss_pred HHHHHHH--HHhh------CCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCC------------------------Ch
Q 025188 185 EIDELWM--EYEE------NSTAEAKIVKDFDKAEM-----ILQAVEYENEQGK------------------------DL 227 (256)
Q Consensus 185 ei~~Lw~--EyE~------~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~------------------------~l 227 (256)
.+..+.. .|.. ..|+|+++|.++|+|++ +-.+..|.+.-+. .+
T Consensus 92 ~V~~~I~~Hs~~~~~~~~~~~~~e~~Iv~dAD~LDalGaigiaR~~~y~g~~~~~~y~~~~~~~~~~~~~~y~~~~~~~i 171 (225)
T 2qgs_A 92 QVLYIIKHMSYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFSGHFGEPMWTETKLSNEELHTSLVEELDNSAI 171 (225)
T ss_dssp HHHHHHHTTC-------CCCCCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCCCCCCHHHHTSGGGGGSCCCHH
T ss_pred HHHHHHHHcCcccCCCCCCCCCHHHHHHHhhHHHHHhhhHHHHHHHHHHHhcCCcccCccccCcccccHHHhhcCcchHH
Confidence 5655554 2222 45899999999999985 4556777664222 24
Q ss_pred HHHHHh---hcccccCHHHHHHHHHH
Q 025188 228 EEFFQS---TAGKFQTELGKAWAAEI 250 (256)
Q Consensus 228 ~ef~~~---~~~~i~t~~~k~~~~~i 250 (256)
+-|++. ....++|+.+|+++++-
T Consensus 172 ~hf~ekll~l~~~~~T~~gr~~ae~r 197 (225)
T 2qgs_A 172 KHFYEKLFKLKDLMHTPTAKKLAEER 197 (225)
T ss_dssp HHHHHTGGGSGGGCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456553 34568899999998764
No 13
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=98.14 E-value=2.8e-06 Score=75.52 Aligned_cols=133 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC--CCChHHHHHHHHHHHHHHHHh--cC-CchhH
Q 025188 109 IADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD--GIPKEEKSQREREAITYMCKL--LG-QGARA 183 (256)
Q Consensus 109 VAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~--~v~~~~K~~~E~~A~~~L~~l--L~-p~~~~ 183 (256)
.-+|+.||+-+|..++...+.|++.+...||+||++ +.+... ....+... .+.+.+++.. ++ |++..
T Consensus 26 ~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig-----~~~~~~~~~~~H~~~g---a~~A~~~L~~~~~g~~~e~i 97 (239)
T 3gw7_A 26 DVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIV-----SLAKNHPQRQRSSILA---AEETRRLLREEFEQFPAEKI 97 (239)
T ss_dssp -CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTT-----C--------CCSSHHH---HHHHHHHHHHHTTSSCTTTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-----cccccCCccccHHHHH---HHHHHHHHHhccCCcCHHHH
Confidence 358999999999999987789999999999999994 332111 11111111 1122333333 22 43333
Q ss_pred HHHHHHHHH--Hh---hCCcHHHHHHHHHHHHHH-----HHHHHHHHHhcCC--------------------ChHHHHHh
Q 025188 184 KEIDELWME--YE---ENSTAEAKIVKDFDKAEM-----ILQAVEYENEQGK--------------------DLEEFFQS 233 (256)
Q Consensus 184 ~ei~~Lw~E--yE---~~~T~EAklVK~aDkLe~-----llQa~ey~~~gn~--------------------~l~ef~~~ 233 (256)
+.+..+... |. .-.|+|+++|.++|+|++ +-.++.|.+..|. .++-|++.
T Consensus 98 ~~V~~~I~~Hs~~~~~~p~t~Ea~IV~DADrLDalGAiGIaR~f~y~g~~~~~l~~p~~~~~~~r~~~~~~~~i~Hf~eK 177 (239)
T 3gw7_A 98 EAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTK 177 (239)
T ss_dssp TSTTTGGGSSCTTSCCCCCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTCCCSGGGGGGGTSCCCCC--CHHHHHTTT
T ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHhHHHHHHhhchhHHHHHHHHHHhCCccCCCcchhhhhhccccchhHHHHHHHH
Confidence 444433322 21 347899999999999995 7789999886443 12346543
Q ss_pred ---hcccccCHHHHHHHHH
Q 025188 234 ---TAGKFQTELGKAWAAE 249 (256)
Q Consensus 234 ---~~~~i~t~~~k~~~~~ 249 (256)
....++|+.+|++|++
T Consensus 178 Ll~L~~~m~T~~gr~~A~~ 196 (239)
T 3gw7_A 178 LLKLPQTMQTARGKQLAQH 196 (239)
T ss_dssp GGGTTTTCCSHHHHHHHHH
T ss_pred HHhhHhhccCHHHHHHHHH
Confidence 4457999999999875
No 14
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=98.13 E-value=1.6e-05 Score=69.55 Aligned_cols=133 Identities=19% Similarity=0.275 Sum_probs=84.4
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~e 185 (256)
.-.-+|+.||+-+|..++...++|++-+...||+||++ |. ... +... .-.+.+.+++..++ |.+..+.
T Consensus 29 ~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDig-----k~-k~~--~~~~---~ga~~a~~~L~~~g~~~~~~~~ 97 (231)
T 2pjq_A 29 GHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI-----DD-KLM--ANPA---KAHQDLIVQLNAQNVTADDQTA 97 (231)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-----C---------------CHHHHHHHHHTTTCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC-----cc-cCC--ChHH---HHHHHHHHHHHHCCCCHHHHHH
Confidence 45689999999999999876689999999999999985 31 111 1111 11122334444442 4444555
Q ss_pred HHHHHH--HHhh------CCcHHHHHHHHHHHHHHH-----HHHHHHHHhcC------------------------CChH
Q 025188 186 IDELWM--EYEE------NSTAEAKIVKDFDKAEMI-----LQAVEYENEQG------------------------KDLE 228 (256)
Q Consensus 186 i~~Lw~--EyE~------~~T~EAklVK~aDkLe~l-----lQa~ey~~~gn------------------------~~l~ 228 (256)
+..+.. .|.. ..++|+++|.++|+|+.+ ..+..|.+.-+ ..++
T Consensus 98 V~~~I~~Hs~~~~~~~~~~~~~ea~Iv~dAD~LDalgaigiaR~~~y~g~~~~~~y~~~~~~~~~~~~~~y~~~~~~~i~ 177 (231)
T 2pjq_A 98 IFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAIN 177 (231)
T ss_dssp HHHHHTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTH
T ss_pred HHHHHHHcCCccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCcccCCCcCccccccHHHHhcCcchHHH
Confidence 655554 2322 458999999999999863 44566655321 1345
Q ss_pred HHHHh---hcccccCHHHHHHHHHH
Q 025188 229 EFFQS---TAGKFQTELGKAWAAEI 250 (256)
Q Consensus 229 ef~~~---~~~~i~t~~~k~~~~~i 250 (256)
.|++. ....++|+.+|+++++-
T Consensus 178 hf~ekll~l~~~~~T~~gr~~ae~r 202 (231)
T 2pjq_A 178 HFYEKLFKLAALMNTDTAKALAAHR 202 (231)
T ss_dssp HHHHTGGGHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56553 33468999999998764
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=97.96 E-value=5.6e-05 Score=64.98 Aligned_cols=138 Identities=20% Similarity=0.283 Sum_probs=77.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC-CchhHH
Q 025188 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~-p~~~~~ 184 (256)
+...-+|+.+|+.+|..++...+.|.+.+...||+||++-.... ..+...... -...+.+++..++ |.+...
T Consensus 31 ~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~~~~----~~~~~H~~~---ga~~a~~~L~~~~~~~~~i~ 103 (220)
T 2pq7_A 31 PAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEA----LTGVDHAES---GAEYASGLLPTMGFDISFVA 103 (220)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHH----HHCCCHHHH---HHHHHHHHGGGGTCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCcccC----CCcCCHHHH---HHHHHHHHHHHCCCCHHHHH
Confidence 35678999999999999988668899999999999999532110 000111111 1111223333332 332233
Q ss_pred HHHHHHHHHh-----hCCcHHHHHHHHHHHHHHH-----HHHHHHHHhcCC-------------------ChHHHHHh--
Q 025188 185 EIDELWMEYE-----ENSTAEAKIVKDFDKAEMI-----LQAVEYENEQGK-------------------DLEEFFQS-- 233 (256)
Q Consensus 185 ei~~Lw~EyE-----~~~T~EAklVK~aDkLe~l-----lQa~ey~~~gn~-------------------~l~ef~~~-- 233 (256)
.+..+..... ...++|+++|.++|+|+.+ -.+++|....+. .++-|++.
T Consensus 104 ~v~~~I~~H~~~~~~~~~~~~a~Iv~dAD~Ldal~a~~i~r~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~i~hf~ekl~ 183 (220)
T 2pq7_A 104 EVSKAIRSHRYSGGLTPTSLTGKILQDADRLDAIGAVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRSSINHFHEKIL 183 (220)
T ss_dssp HHHHHHHHCC-----CCCSHHHHHHHHHHHGGGSSHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHcCcccCCCCCCHHHHHHHHhhHHhhccchHHHHHHHHHHhcCCcccCCccCchhhhhcCcccHHHHHHHHHH
Confidence 4444433211 3458999999999999954 455555553221 12335443
Q ss_pred -h-cccccCHHHHHHHHHH
Q 025188 234 -T-AGKFQTELGKAWAAEI 250 (256)
Q Consensus 234 -~-~~~i~t~~~k~~~~~i 250 (256)
. ...++|+.+|+++++-
T Consensus 184 ~l~~~~~~T~~g~~~a~~r 202 (220)
T 2pq7_A 184 KIRPETFWTETARKMAEDR 202 (220)
T ss_dssp ---CTTCSSHHHHHHHHHH
T ss_pred HhchhhccCHHHHHHHHHH
Confidence 2 4567999999998763
No 16
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=97.38 E-value=0.0012 Score=60.28 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHH----HHHHHHhhhhhhhhhcCCCC--CCCCChHHHHHHHHHHHH--H-HHHhc
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDK----CIKMAIVHDIAEAIVGDITP--SDGIPKEEKSQREREAIT--Y-MCKLL 177 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~K----vv~MALiHDL~Ea~tGDI~~--~~~v~~~~K~~~E~~A~~--~-L~~lL 177 (256)
+...+||.+||.+|..++...|++.+. +..-||+||++-+.+-+-.. +...+.++.......... + +....
T Consensus 165 ~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G~~~ll~~~ 244 (328)
T 3tm8_A 165 KTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKK 244 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 789999999999999999887887665 45589999999875533221 112333333322222221 1 22222
Q ss_pred CCchhHHHHHHHHHHH-h--h----------CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhhcccccCHHHH
Q 025188 178 GQGARAKEIDELWMEY-E--E----------NSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGK 244 (256)
Q Consensus 178 ~p~~~~~ei~~Lw~Ey-E--~----------~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~~~~~~i~t~~~k 244 (256)
....++......- | + .-+.+|+++..||.++++.....|... ..+.+.+....+++....+.
T Consensus 245 ---~~~~~v~~~i~~HHEr~dGsGP~gl~g~~I~~~arIv~vaD~~dal~~~r~y~~~--~~a~~~l~~~~g~~dp~~v~ 319 (328)
T 3tm8_A 245 ---HFDQTVINIIGQHEETINGTGPKGLREKDMDPLAVLVSSANAMDRLITFEGVPKA--EAAKKLMIDHVGKHPLQHIQ 319 (328)
T ss_dssp ---TSCHHHHHHHHHTTCCTBSCSTTCCBGGGSCHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHSTTSSCHHHHH
T ss_pred ---CCcHHHHHHHHHhcCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCcH--HHHHHHHHHccCCCCHHHHH
Confidence 1224444444332 2 1 346789999999999999986555432 34555566666777555555
Q ss_pred HHHHH
Q 025188 245 AWAAE 249 (256)
Q Consensus 245 ~~~~~ 249 (256)
.+.+-
T Consensus 320 ~~~~~ 324 (328)
T 3tm8_A 320 HLNDI 324 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 17
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=97.21 E-value=0.0011 Score=62.39 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=89.7
Q ss_pred HHhHhccccccC---ccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCH-HHHHHHHHhhhhhhhhhcCCCC---CCCCC
Q 025188 86 LCHRLKTTKRAG---WVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR-DKCIKMAIVHDIAEAIVGDITP---SDGIP 158 (256)
Q Consensus 86 ~~~~LK~i~R~G---w~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~-~Kvv~MALiHDL~Ea~tGDI~~---~~~v~ 158 (256)
..++|+.++-.| ++..|.. .+--+||.+|+.+|..++...++|. +.+...||+||++-..-+.... ..+.+
T Consensus 27 ~fqRLr~i~QlG~~~~v~p~a~--~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pfsh~~e~~~~~g~~ 104 (371)
T 2hek_A 27 PFQRLRYVKQLGLAYLVFPSAQ--HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFSHTTEVLLPRERS 104 (371)
T ss_dssp HHHGGGGSBTTTTGGGTSTTCC--CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSSSCHHHHSTTSSS
T ss_pred HHhCccccCccCccceeeCCCC--CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCccccccchHHHhccCCC
Confidence 456777776666 4444432 7889999999999999998778887 6788899999997643221110 01111
Q ss_pred hHHHH--HHHHHHHHHHHHh-cCCchhHHHHHHHHHHH--hhCCcHHHHHHH---HHHHHHHHHHHHHHHHh--cCCChH
Q 025188 159 KEEKS--QREREAITYMCKL-LGQGARAKEIDELWMEY--EENSTAEAKIVK---DFDKAEMILQAVEYENE--QGKDLE 228 (256)
Q Consensus 159 ~~~K~--~~E~~A~~~L~~l-L~p~~~~~ei~~Lw~Ey--E~~~T~EAklVK---~aDkLe~llQa~ey~~~--gn~~l~ 228 (256)
.++.. -.++..+.+++.. + +.+..+.+..++..- ....+.++++|. ++||++.++.-..+.+. |+.+++
T Consensus 105 He~~g~~i~~~~~i~~iL~~~~-~~~~i~~I~~~I~~~~~~~~~~~l~~IVs~~lDaDRlDYl~RDs~~~g~~~g~~d~~ 183 (371)
T 2hek_A 105 HEDFTERVIKETEIYEILKQDY-SHEDIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAYFCGVSYGFFDYD 183 (371)
T ss_dssp CCCHHHHHHHHSHHHHHHHTTS-CHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCCSSCCCCH
T ss_pred HHHHHHHHHhcchHHHHHHHhC-CHHHHHHHHHHHhcCCCCcccchHHHHhcCCCCccccchhccchhhhcCCcCCcCHH
Confidence 11111 1111122233333 3 222223355555431 012467899999 99999999998877775 556888
Q ss_pred HHHHhh
Q 025188 229 EFFQST 234 (256)
Q Consensus 229 ef~~~~ 234 (256)
+++.+.
T Consensus 184 rll~~~ 189 (371)
T 2hek_A 184 RLISTL 189 (371)
T ss_dssp HHHHTE
T ss_pred HHHhhe
Confidence 888653
No 18
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.46 E-value=0.017 Score=51.79 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcCCCCCC--CC------ChHHHHHHHHHHHH-----
Q 025188 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGDITPSD--GI------PKEEKSQREREAIT----- 171 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~v-D~~Kvv~MALiHDL~Ea~tGDI~~~~--~v------~~~~K~~~E~~A~~----- 171 (256)
.+..-.||.++|.+|..+|...|. |.+.+...+|+||++...+-+..+.. .+ ....-...|.+.+.
T Consensus 116 ~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~~~~~~H~~ 195 (305)
T 3hc1_A 116 RSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHCE 195 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHCCCHHH
Confidence 367899999999999999987765 89999999999999998876532210 00 00000123333321
Q ss_pred ---HHHHhcC-CchhHHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHH
Q 025188 172 ---YMCKLLG-QGARAKEIDELWMEYEEN---STAEAKIVKDFDKAEMILQ 215 (256)
Q Consensus 172 ---~L~~lL~-p~~~~~ei~~Lw~EyE~~---~T~EAklVK~aDkLe~llQ 215 (256)
.++...+ |+...+.+ ....|...+ ...++++|..+|.++.+..
T Consensus 196 iG~~ll~~w~lp~~i~~~I-~~HHe~~~~~~~~~~~a~Iv~lAD~~~~~~~ 245 (305)
T 3hc1_A 196 VGFALAKRWSLNEFICDTI-LYHHDIEAVPYKQAAIVAMVAFADEYCTLRR 245 (305)
T ss_dssp HHHHHHHHTTCCHHHHHHH-HHTTCGGGCSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHH-HHhCChhhccccccHHHHHHHHHHHHHHHhC
Confidence 2333332 32222222 112222222 4689999999999998865
No 19
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.56 E-value=0.0063 Score=50.98 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=36.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
+..-+||.+||.+|..+|...|+|.+++...+|+||++-.
T Consensus 17 ~~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 17 EHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 5688999999999999998889999999999999999865
No 20
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.50 E-value=0.0068 Score=50.87 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=36.5
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~ 147 (256)
+..-+||.+||.+|..+|...|+|.+++...+|+||++-..
T Consensus 18 ~~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 18 EKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 35678999999999999998899999999999999998653
No 21
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.40 E-value=0.0076 Score=50.96 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=36.9
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
+..-+||.+||.+|..+|...|+|.+++...+|+||++-.
T Consensus 25 ~~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 5688999999999999999889999999999999999865
No 22
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=94.19 E-value=0.33 Score=45.70 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 025188 86 LCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (256)
Q Consensus 86 ~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~ 144 (256)
...+|+.++=......| ...-|--+||-.||.+|-.++...|+|.+-+-..||+|||+
T Consensus 54 ~FrRL~~ktQv~~~~~~-d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 54 AFRRLEYKTQVLPGWAG-DYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHGGGSCSSSCSCC---CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHcCCCccccCCCC-cccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45566654443333222 11257789999999999999988899988888899999997
No 23
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.69 E-value=1.2 Score=42.27 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=85.2
Q ss_pred HHHHhHhccccccCcc---CCCCCCCCcHHhHHHHHHHHHHHhccCCC-----CC---HHHHHHHHHhhhhhh---hhhc
Q 025188 84 LSLCHRLKTTKRAGWV---KRNVNNPESIADHMYRMGLMGLIMADIPG-----ID---RDKCIKMAIVHDIAE---AIVG 149 (256)
Q Consensus 84 l~~~~~LK~i~R~Gw~---~~gi~~~ESVAEHS~rvAliAllLa~~~~-----vD---~~Kvv~MALiHDL~E---a~tG 149 (256)
-....||+.++-.|.. ..|.. -|=-+||-.|+-+|-.++...+ +| .+.+...||+||++= .-+|
T Consensus 30 s~~fqRL~~~~Qlg~~~~v~p~a~--htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh~PfsH~~ 107 (410)
T 2q14_A 30 HPLLQRLTRIKQVGLSSVVYPGAQ--HTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPFSHVL 107 (410)
T ss_dssp SHHHHGGGGSBTTTTTTTTCTTCC--CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTCCTTHHHH
T ss_pred CHHHHhHhhhhccCCceeecCCCC--CCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCcccccc
Confidence 3457788888887644 34432 5889999999999998776442 44 477888999999953 2233
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHH---HHHHHHHHHHHHHHHHh--cC
Q 025188 150 DITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVK---DFDKAEMILQAVEYENE--QG 224 (256)
Q Consensus 150 DI~~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK---~aDkLe~llQa~ey~~~--gn 224 (256)
+-.-..+...+.. -.+.++.+...+ +..+ ....+++.. ....+.++++|. ++||++-++.-..+.+. |+
T Consensus 108 E~~~~~~~~He~~---s~~ii~~l~~~i-~~~L-~~~~~ii~g-~~~~~~l~~ivs~~ldaDr~DYL~RDa~~~Gv~~G~ 181 (410)
T 2q14_A 108 EDTIVQGVSHEEI---SLMLMERMNKEM-NGQL-SLAIQIFKD-EYPKRFLHQLVSGQLDMDRLDYLRRDSFYTGVTEGN 181 (410)
T ss_dssp HTTTSTTCCHHHH---HHHHHHHHHHHT-TTTT-HHHHHHHTT-CSSSTHHHHHHSSTTCHHHHHHHHHHHHHHCCGGGC
T ss_pred HHhhcCCCCHHHH---HHHHHHHhhhhH-HHHH-HHHHHHHcC-CCccchHHHhhcCCcCcHHHHHhcchHHHhCCCCCC
Confidence 2211112233222 122233333333 2212 122233332 123678999999 99999999886555442 56
Q ss_pred CChHHHHHh
Q 025188 225 KDLEEFFQS 233 (256)
Q Consensus 225 ~~l~ef~~~ 233 (256)
.++++++..
T Consensus 182 ~d~~Rii~~ 190 (410)
T 2q14_A 182 IGSARIIKM 190 (410)
T ss_dssp CCHHHHHHT
T ss_pred CCHHHHHhh
Confidence 688888765
No 24
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=90.75 E-value=0.15 Score=44.96 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=38.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhc
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVG 149 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tG 149 (256)
+..-.||.++|.+|..++...+.|.+++...+|+||++....-
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiGkl~l~ 146 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIV 146 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccHHHHH
Confidence 5688999999999999998778999999999999999998753
No 25
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=89.68 E-value=0.32 Score=43.18 Aligned_cols=44 Identities=2% Similarity=0.060 Sum_probs=38.3
Q ss_pred CcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcC
Q 025188 107 ESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGD 150 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~v-D~~Kvv~MALiHDL~Ea~tGD 150 (256)
+..-.||.++|.+|..++...+. +.+++...+|+||++....-.
T Consensus 107 ~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agLLhdiGkl~l~~ 151 (288)
T 3ljx_A 107 AAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALAT 151 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccHHHHHH
Confidence 44789999999999999987755 899999999999999987644
No 26
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=89.20 E-value=5.8 Score=33.18 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=52.4
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHhcC--CchhHH
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG--QGARAK 184 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~~v~~~~K~~~E~~A~~~L~~lL~--p~~~~~ 184 (256)
+.--.|-..||.+ ++...|+.-..++.-||+||..|- ++ ++.++-.+.=-..+..++..+- +.....
T Consensus 29 ~PYi~Hpl~VA~i---l~~~~~~~d~~~i~AALLHDvvED--t~------~t~e~i~~~FG~~Va~lV~gvTk~~~~~~~ 97 (178)
T 3nr1_A 29 TPYINHPIGVARI---LTHEAGITDIVVLQAALLHDTVED--TD------TTLDEVELHFGAQVRRLVEEVTDDKTLPKL 97 (178)
T ss_dssp CBTTHHHHHHHHH---HHHTSCCCCHHHHHHHHHTTHHHH--SS------CCHHHHHHHHHHHHHHHHHHTCCCTTSCHH
T ss_pred CcHHHHHHHHHHH---HHHHcCCCCHHHHHHHHhhhHHhc--CC------CCHHHHHHHHCHHHHHHHHHHHhccccchh
Confidence 4446899888755 433336534567888999999994 12 2222211111122233444441 110011
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Q 025188 185 EIDELWMEYEENSTAEAKIVKDFDKAEMILQ 215 (256)
Q Consensus 185 ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQ 215 (256)
+-....-|.-...++.+.+||.+|++..+-.
T Consensus 98 ~~~~~q~e~~~~~d~rvvlIKLADRl~NmR~ 128 (178)
T 3nr1_A 98 ERKRLQVEQAPHSSPGAKLVKLADKLYNLRD 128 (178)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 1111122222368899999999999998743
No 27
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=86.13 E-value=7.5 Score=32.49 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=61.9
Q ss_pred CcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC
Q 025188 76 SSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD 155 (256)
Q Consensus 76 ~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~ 155 (256)
.+.+.+.|...... ...|.+ ..| +.--.|-..||.+ ++...|++-..++.-||+||..|- +++
T Consensus 8 ~l~~A~~~A~~~H~--gQ~rk~--~~G----~pyi~Hpl~VA~i---la~~l~~~D~~~i~AAlLHDvvED--t~~---- 70 (179)
T 3nqw_A 8 KFMECLQYAAFKHR--QQRRKD--PQE----TPYVNHVINVSTI---LSVEACITDEGVLMAALLHDVVED--TDA---- 70 (179)
T ss_dssp HHHHHHHHHHHHST--TCBCSS--SSC----CBTHHHHHHHHHH---HHTTTCCCCHHHHHHHHTTTHHHH--SSC----
T ss_pred HHHHHHHHHHHHhc--cCcCCC--CCC----CcHHHHHHHHHHH---HHHHcCCCCHHHHHHHHhhhHHhc--CCC----
Confidence 45555566544332 333322 124 4456898887755 664446623457888999999994 222
Q ss_pred CCChHHHHHHHH---HHHHHHHHhcC--CchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Q 025188 156 GIPKEEKSQRER---EAITYMCKLLG--QGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQ 215 (256)
Q Consensus 156 ~v~~~~K~~~E~---~A~~~L~~lL~--p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQ 215 (256)
+.++ .++ ..+..++..+- +.....+-.....|--...++.+.+||.+|++..+-.
T Consensus 71 --t~e~---i~~~FG~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~~d~rvvlIKLADRl~NmR~ 130 (179)
T 3nqw_A 71 --SFED---VEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRD 130 (179)
T ss_dssp --CHHH---HHHHHCHHHHHHHHHTCCCTTSCHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred --CHHH---HHHHHCHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2222 222 22233444431 1100111111111111257899999999999998754
No 28
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=84.21 E-value=0.63 Score=40.89 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.0
Q ss_pred CcHHhHHHHHHHHHHHhccCC-------CCCHHHHHHHHHhhhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIP-------GIDRDKCIKMAIVHDIAEAIV 148 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~-------~vD~~Kvv~MALiHDL~Ea~t 148 (256)
+..-.||.++|.+|..++... +.|.+++...+|+||++....
T Consensus 116 ~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~l 164 (281)
T 3i7a_A 116 DEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPV 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHHH
Confidence 457899999999999888643 689999999999999998754
No 29
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=81.36 E-value=0.86 Score=40.28 Aligned_cols=44 Identities=5% Similarity=-0.076 Sum_probs=36.8
Q ss_pred CcHHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhhhhcC
Q 025188 107 ESIADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEAIVGD 150 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~-~vD~~Kvv~MALiHDL~Ea~tGD 150 (256)
+..-.||.++|.+|..++... +.|.+++..-+|+||++...+-+
T Consensus 123 ~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDIGkl~l~~ 167 (297)
T 1vqr_A 123 QNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSN 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHccHHHHHH
Confidence 457789999999999887765 57889999999999999988644
No 30
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=77.66 E-value=2 Score=40.78 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=38.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC----CCHHHHHHHHHhhhhhhhhhc
Q 025188 106 PESIADHMYRMGLMGLIMADIPG----IDRDKCIKMAIVHDIAEAIVG 149 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllLa~~~~----vD~~Kvv~MALiHDL~Ea~tG 149 (256)
.+..-.||.++|.+|..++...+ .+.+.+...+|+||++....-
T Consensus 276 ~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~ 323 (457)
T 3mem_A 276 YVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLA 323 (457)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHH
Confidence 47899999999999999998653 478999999999999998864
No 31
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=72.53 E-value=15 Score=34.67 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=25.9
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea 146 (256)
|.--.|-..||.+ +++. +.|.+ .+.-||+||..|-
T Consensus 48 ePYi~Hpl~VA~i---La~l-~~D~~-~i~AALLHDvvED 82 (393)
T 1vj7_A 48 EPYIVHPIQVAGI---LADL-HLDAV-TVACGFLHDVVED 82 (393)
T ss_dssp CBTTHHHHHHHHH---HHHT-TCCHH-HHHHHHHTTHHHH
T ss_pred CcHHHHHHHHHHH---HHHh-cCCHH-HHHHHHhhhHHhc
Confidence 4456788888766 5554 67765 6788999999984
No 32
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=52.71 E-value=19 Score=34.90 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=74.1
Q ss_pred HHHhHhccccccCc---cCCCCCCCCcHHhHHHHHHHHHHHhccCC------------CCC---HHHHHHHHHhhhhh--
Q 025188 85 SLCHRLKTTKRAGW---VKRNVNNPESIADHMYRMGLMGLIMADIP------------GID---RDKCIKMAIVHDIA-- 144 (256)
Q Consensus 85 ~~~~~LK~i~R~Gw---~~~gi~~~ESVAEHS~rvAliAllLa~~~------------~vD---~~Kvv~MALiHDL~-- 144 (256)
....||+.++-.|. +..|- .-|=-+||-.|+-+|-.++... +++ ..-+...||+||++
T Consensus 62 ~~FqRLr~i~QlG~~~~v~pga--~HTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIGH~ 139 (480)
T 3irh_A 62 AEVQRLRRIKQLGTSSFTFHGA--EHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHG 139 (480)
T ss_dssp HHHHGGGGSBSSTTGGGTSTTC--CCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTTCC
T ss_pred HHHHhhhhhhcccccceecCCC--CcCHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccCCC
Confidence 45778888887664 44443 2588999999999998655421 133 23345789999995
Q ss_pred ------hhhhcCCCCCCCCChHHHH--HHH--HHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHH------HHH
Q 025188 145 ------EAIVGDITPSDGIPKEEKS--QRE--REAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVK------DFD 208 (256)
Q Consensus 145 ------Ea~tGDI~~~~~v~~~~K~--~~E--~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK------~aD 208 (256)
|...| ...+... -.+ ...+..++...++. ..+.+..++. +..+...++. ++|
T Consensus 140 PFsH~~E~~~~-------~~HE~~s~~ii~~~~~ei~~iL~~~~~~-~p~~v~~ii~----~~~~~~~l~~lis~~LDvD 207 (480)
T 3irh_A 140 PYSHTFEHIFD-------TNHEAITVQIITSPETEVYQILNRVSAD-FPEKVASVIT----KQYPNPQVVQMISSQIDAD 207 (480)
T ss_dssp TTHHHHHHHHC-------CCHHHHHHHHHHCTTSHHHHHHHHHCTT-HHHHHHHHHT----TCSSCHHHHHHHSSTTCHH
T ss_pred CccchhhhccC-------CCHHHHHHHHHHccchhHHHHHHHcCCC-cHHHHHHHHc----CCCCchhHHHhccCCCCcH
Confidence 22221 1222111 000 01122233333221 2233333332 2222222332 689
Q ss_pred HHHHHHHHHHHHHh--cCCChHHHHHhh
Q 025188 209 KAEMILQAVEYENE--QGKDLEEFFQST 234 (256)
Q Consensus 209 kLe~llQa~ey~~~--gn~~l~ef~~~~ 234 (256)
|++-++.-..|.+. |+.++++++...
T Consensus 208 RmDYLlRDsy~tGv~yG~~D~~RLi~~l 235 (480)
T 3irh_A 208 RMDYLLRDAYFTGTEYGTFDLTRILRVI 235 (480)
T ss_dssp HHHHHHHHHHHHTCSTTCCCHHHHHHHE
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHhhc
Confidence 99999988777664 456888888654
No 33
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=44.76 E-value=23 Score=31.69 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh----------hhcCCCCC
Q 025188 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA----------IVGDITPS 154 (256)
Q Consensus 107 ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea----------~tGDI~~~ 154 (256)
-+=-+|++++|-.|-- + |-|.+-+...||+|||+-+ ++||..+.
T Consensus 58 v~ql~HaLQTAe~ar~--d--g~d~dw~~laaLlHDLGkll~~~~~~qW~vvgdtfpv 111 (250)
T 2ibn_A 58 FPNSFHAFQTAEGIRK--A--HPDKDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFPV 111 (250)
T ss_dssp CCHHHHHHHHHHHHHH--H--STTCHHHHHHHHHTTGGGHHHHTTCCGGGTSSCCCBS
T ss_pred ccHHHHHHHHHHHHHH--h--CcChhHHHHHHHHhccHhhhcccCCcchhhccCcccc
Confidence 4556999999877542 2 5676888899999999874 58997764
No 34
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=43.07 E-value=30 Score=33.98 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHhHhccccccCc---cCCCCCCCCcHHhHHHHHHHHHHHhccCC-------CCCH---HHHHHHHHhhhhh
Q 025188 85 SLCHRLKTTKRAGW---VKRNVNNPESIADHMYRMGLMGLIMADIP-------GIDR---DKCIKMAIVHDIA 144 (256)
Q Consensus 85 ~~~~~LK~i~R~Gw---~~~gi~~~ESVAEHS~rvAliAllLa~~~-------~vD~---~Kvv~MALiHDL~ 144 (256)
....||+.++=.|. +..|-. -|=-+||-.|+-+|-.++... +++. .-+...||+|||+
T Consensus 41 ~~FqRLr~i~Qlg~~~~v~pga~--hTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 41 PQFQRLRYIKQLGGGYYVFPGAS--HNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHGGGGSBTTGGGTTTCTTCC--CBHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHhhccCccccCCcccccCCCC--cCHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 45678888777764 444432 588999999999998665421 3443 2345579999995
No 35
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=39.97 E-value=25 Score=33.33 Aligned_cols=42 Identities=10% Similarity=-0.092 Sum_probs=33.2
Q ss_pred CCcHHhHHHH-HHHHHHHhccCC--CCC--HHHHHHHHHhhhhhhhh
Q 025188 106 PESIADHMYR-MGLMGLIMADIP--GID--RDKCIKMAIVHDIAEAI 147 (256)
Q Consensus 106 ~ESVAEHS~r-vAliAllLa~~~--~vD--~~Kvv~MALiHDL~Ea~ 147 (256)
+=-..||+.. |+.+|.-++..+ +.+ .+-++.-||+|||+-+.
T Consensus 73 ~GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 73 LCSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 3568999999 999999888765 333 44568889999999875
No 36
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=34.60 E-value=26 Score=30.95 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCcHHhHHHHHHHHHHHh------------ccCCCCCH----HHHHHHHHhhhhhhh
Q 025188 106 PESIADHMYRMGLMGLIM------------ADIPGIDR----DKCIKMAIVHDIAEA 146 (256)
Q Consensus 106 ~ESVAEHS~rvAliAllL------------a~~~~vD~----~Kvv~MALiHDL~Ea 146 (256)
-..+..|+.-||-+|..+ +..+|++. .-+.-++.+||++=.
T Consensus 23 ~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~ 79 (265)
T 3sk9_A 23 FHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKA 79 (265)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccc
Confidence 388999999999999874 33336664 345668899999875
No 37
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=28.08 E-value=1.3e+02 Score=22.24 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.6
Q ss_pred HHHHHHHHHhHhccccccCccCCCCC--CCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 025188 79 SVIDFLSLCHRLKTTKRAGWVKRNVN--NPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139 (256)
Q Consensus 79 ~~~~Fl~~~~~LK~i~R~Gw~~~gi~--~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MAL 139 (256)
-...+..+++-|....++++...... ..+.+.+=.--+-+....+|..+|+|++.++...+
T Consensus 23 ~~~kL~eE~gEl~e~~~~~~~~~~~~~~~~~~i~eELgDvL~~l~~lA~~lgiDle~al~~k~ 85 (100)
T 2q73_A 23 YFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34567788888887777655422111 13667666666666666688888999999987654
No 38
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=24.07 E-value=49 Score=31.59 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC---------------CCCH----HHHHHHHHhhhhh
Q 025188 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP---------------GIDR----DKCIKMAIVHDIA 144 (256)
Q Consensus 85 ~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~---------------~vD~----~Kvv~MALiHDL~ 144 (256)
....||+.++=-|-...+ ...-|=-+||-.|+-+|-.++... +++. +-+-..||.|||+
T Consensus 42 ~~frRL~~ktQv~~~~~~-~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiG 119 (444)
T 3bg2_A 42 APFRSLQDKTQVIPLSKT-DFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG 119 (444)
T ss_dssp HHHHHGGGCBCSCC---C-CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhhhccCCccCCCCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhcccC
Confidence 346677776665554321 124788999999999987554432 1222 2355689999995
Done!