BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025189
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/215 (71%), Positives = 182/215 (84%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
LPNG AWIP LVK ITDVATN+ K+I VD ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/215 (71%), Positives = 181/215 (84%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPD L+Y+ + SKRSD LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
LPNG AWIP LVK ITDVATN+ K+I VD ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 322 bits (826), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 181/215 (84%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
+QALELIKGFL+N+TIDVLLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
LPNG AWIP LVK ITDVATN+ K+I VD ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 320 bits (819), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 178/209 (85%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 41 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 100
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
+QALELIKGFL+N+TIDVLLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 101 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 160
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 161 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 220
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVV 209
LPNG AWIP LVK ITDVATN+ K+I V
Sbjct: 221 ALPNGEAWIPNLVKAITDVATNQRKAIHV 249
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
MGKGGVGKSSTVNS+IGERVV+++ FQSE RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPDGL YD + SKRS+ALL+ +R GA L K + + +PV L+ENSGRC+KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKG 223
+LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG + +G
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRG 266
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 178/220 (80%), Gaps = 1/220 (0%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 61
GKGGVGKSSTVNS+IGERVV+++ FQSE RPV VSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 46 GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYIND 105
Query: 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121
AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ
Sbjct: 106 XALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165
Query: 122 LCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKI 181
PPDGL YD + SKRS+ALL+ +R GA L K + + +PV L+ENSGRC+KN++DEK+
Sbjct: 166 FSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
Query: 182 LPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDD 221
LPNG AWIP LV+ IT+VA NKS+SI VDK LID + D
Sbjct: 225 LPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAAD 264
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV---MVSRSKGGFTLNIIDTPGLVEAG 57
G+ VGKSS +N+++G+ V V+ + PV M G TL +DTPGL + G
Sbjct: 41 GRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTL--VDTPGLDDVG 97
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV- 59
+G+ VGKSS VN+++GE V V++ V S + I+DT G+ + G V
Sbjct: 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY 260
Query: 60 ----NYQALELIKGFLLNKTIDVLL 80
Y L +K ++ + V+L
Sbjct: 261 ETTEKYSVLRALKAIDRSEVVAVVL 285
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+G+ VGKS+ N + GER+ V + S + N+IDT G+
Sbjct: 29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RSKGGFTLNIIDTPGL 53
+G+ VGKS+ +N ++G++ +++ S +++ R +V ++G + +DTPGL
Sbjct: 11 VGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RSKGGFTLNIIDTPGL 53
+G+ VGKS+ +N ++G++ +++ S +++ R +V ++G + +DTPGL
Sbjct: 14 VGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 61
G+ GVGKSS +N+++G Q+E L ++ID+PG+ E G +
Sbjct: 167 GQSGVGKSSLLNALLG--------LQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHL 218
Query: 62 QALELIKGFL 71
+ ++ +GF+
Sbjct: 219 EPEQITQGFV 228
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPGLVE-A 56
+GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP +
Sbjct: 28 VGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPDMFSWK 85
Query: 57 GYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115
+ E+ + +LL+ VLL +L Y D+Q + V FG+ +++
Sbjct: 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIV 143
Query: 116 VLTHAQ 121
+ TH +
Sbjct: 144 LFTHKE 149
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 6 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAGYVN 60
VGK+S N++ G + N V V + +G G+T+N+ID PG GY +
Sbjct: 16 VGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS 69
Query: 61 YQALELIKGFLLNKTID-VLLYADRLDAYR-------VDDLDRQIIKAVTG 103
++ + +LL D V+L AD ++ + + ++++++I A+T
Sbjct: 70 IDE-KIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTA 119
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPGLVE-A 56
+GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP +
Sbjct: 8 VGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPDMFSWK 65
Query: 57 GYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115
+ E+ + +LL+ VLL +L Y D+Q + V FG+ +++
Sbjct: 66 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIV 123
Query: 116 VLTHAQ 121
+ TH +
Sbjct: 124 LFTHKE 129
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LNIIDTPGLVEAGYV 59
+GK G GKS+T NS++G +V + + S T L ++DTPG+ +
Sbjct: 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94
Query: 60 NYQ-ALELIKGFLL 72
N + + E+I+ LL
Sbjct: 95 NAETSKEIIRCILL 108
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPGL---- 53
+GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP +
Sbjct: 11 VGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPDMFSWK 68
Query: 54 --VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
EA Y Q L+ VLL +L Y D+Q + V FG+
Sbjct: 69 DHCEALYKEVQRCYLLSA----PGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMG 122
Query: 112 KSLLVLTHAQ 121
++++ TH +
Sbjct: 123 HTIVLFTHKE 132
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV- 59
+G+ VGKSS VN+ +GE V V++ V S + I+DT G + G V
Sbjct: 181 IGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKVY 240
Query: 60 ----NYQALELIKGFLLNKTIDVLL 80
Y L +K ++ + V+L
Sbjct: 241 ETTEKYSVLRALKAIDRSEVVAVVL 265
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+G+ VGKS+ N + GER+ V + S + N+IDT G+
Sbjct: 9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEA 56
G VGK+S N++ G + N V V + +G G+T+N+ID PG
Sbjct: 12 GCPNVGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65
Query: 57 GYVNYQALELIKGFLLNKTID-VLLYADRLDAYR-------VDDLDRQIIKAVTG 103
GY + ++ + +LL D V+L AD ++ + + ++++++I A+T
Sbjct: 66 GYSSIDE-KIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTA 119
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 2 GKGGVGKSSTVNSVIG-ERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGL 53
G+ GVGKSS +N+++G ++ + N Q + GG ++ID+PG+
Sbjct: 214 GQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGG---DVIDSPGV 270
Query: 54 VEAGYVNYQALELIKGFL 71
E G + + ++ +GF+
Sbjct: 271 REFGLWHLEPEQITQGFV 288
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 18 ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 72
ER +TV + +A+R ++ + L++IDTPG V+ Y +AL +G LL
Sbjct: 51 ERGITV---KXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 6 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAGYVN 60
VGK+S N++ G + N V V + +G G+T+N+ID PG GY +
Sbjct: 16 VGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS 69
Query: 61 YQALELIKGFLLNKTID-VLLYADRLD 86
++ + +LL D V+L AD ++
Sbjct: 70 IDE-KIARDYLLKGDADLVILVADSVN 95
>pdb|3VE7|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE7|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE9|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
pdb|3VE9|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
Length = 215
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 19 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57
R V F + A RP M+SR KG F ++ +PG+ G
Sbjct: 125 RRVNPKGFVAPATRPSMISRVKGDFPDKLVISPGVGTQG 163
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPGLVE-A 56
+GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP
Sbjct: 28 VGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPDXFSWK 85
Query: 57 GYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115
+ E+ + +LL+ VLL +L Y D+Q + V FG+ +++
Sbjct: 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAXGHTIV 143
Query: 116 VLTHAQ 121
+ TH +
Sbjct: 144 LFTHKE 149
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 2 GKGGVGKSSTVNSVIG-ERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGL 53
G+ GVGKSS +N+++G + + N Q + GG ++ID+PG+
Sbjct: 222 GQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG---DVIDSPGV 278
Query: 54 VEAGYVNYQALELIKGFL 71
E G + + ++ +GF+
Sbjct: 279 REFGLWHLEPEQITQGFV 296
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 18 ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 72
ER +TV + +A+R ++ + L++IDTPG V+ Y +AL +G LL
Sbjct: 51 ERGITV---KMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+GK VGKS+ +N+++G +V ++ + + ++G + +DTPGL
Sbjct: 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEAL-------RPVMVSRSKGGFTLNIIDTPGLV 54
G+ GVGKSS +N++ E + N SE L R V + + GG + DTPG
Sbjct: 180 GQSGVGKSSLLNAISPELGLRTNEI-SEHLGRGKHTTRHVELIHTSGGL---VADTPGFS 235
Query: 55 EAGYVNYQALEL 66
+ + + EL
Sbjct: 236 SLEFTDIEEEEL 247
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-SRSKGGFTLNIIDTPGLV--EAG 57
+G+ G GKS+T NS++G+R + R SR + ++DTP + +
Sbjct: 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVS 86
Query: 58 YVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
+ E +LL+ LL +L R D+Q ++ V FG+ + + ++V
Sbjct: 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIV 144
Query: 117 LTHAQ 121
T +
Sbjct: 145 FTRKE 149
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS------RSKGGF-TLNIIDTPG 52
+G GGVGKSS +N R VT N F S+A + V G F TL I DT G
Sbjct: 13 LGDGGVGKSSLMN-----RYVT-NKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGFTLNIIDTPGLVE---A 56
+GK VGKS+ +N+++G +V ++ + +R + V + +DTPG+ E +
Sbjct: 15 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS 74
Query: 57 GYVNYQALELIKGFLLNKTIDVLLYA-DRLDAYRVDD 92
+ + +E+ K L + DV+L+ D + +R D
Sbjct: 75 DVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRD 109
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGFTLNIIDTPGLVE---A 56
+GK VGKS+ +N+++G +V ++ + +R + V + +DTPG+ E +
Sbjct: 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS 75
Query: 57 GYVNYQALELIKGFLLNKTIDVLLYA-DRLDAYRVDD 92
+ + +E+ K L + DV+L+ D + +R D
Sbjct: 76 DVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRD 110
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 59 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 645 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 704
Query: 114 LLVLTHAQLC 123
L V + C
Sbjct: 705 LEVPANTSKC 714
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 59 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 114 LLVLTHAQLC 123
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 59 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 114 LLVLTHAQLC 123
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 59 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 114 LLVLTHAQLC 123
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 2 GKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
G VGKSS +N V V V SF ++ L + IIDTPGL++ + N
Sbjct: 36 GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKY--QIIDTPGLLDRAFEN 93
Query: 61 YQALEL 66
+E+
Sbjct: 94 RNTIEM 99
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 14 SVIGER----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI 67
+V+GER +V +N + + +++ G LN++DTPGL++A +ALE++
Sbjct: 25 NVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEI-LNLLDTPGLLDAKV--QEALEVL 79
>pdb|3POH|A Chain A, Crystal Structure Of An Endo-Beta-N-Acetylglucosaminidase
(Bt_3987) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.55 A Resolution
Length = 451
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 132 VYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
V + +S + TIR G GL E + YA+PVA+ + S + + D K
Sbjct: 100 VNANTKSAEVEXTIRAGEGL--QEDKTYAIPVAISDQSSDITIKDEDAK 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,108,131
Number of Sequences: 62578
Number of extensions: 347034
Number of successful extensions: 808
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 59
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)