BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025189
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/255 (70%), Positives = 215/255 (84%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK IP +IG Q+LI+K
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKM 281
Query: 241 IEGAIKSDIAKDKKP 255
I+GAI++DI KP
Sbjct: 282 IQGAIRNDIKTSGKP 296
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/256 (64%), Positives = 204/256 (79%), Gaps = 2/256 (0%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
MGKGGVGKSSTVNS+IGERVV+++ FQSE RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPDGL YD + SKRS+ALL+ +R GA L K + + +PV L+ENSGRC+KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-K 239
+LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG + +GK+WIP + LQ+L L K
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283
Query: 240 WIEGAIKSDIAKDKKP 255
IE I+ DIA + KP
Sbjct: 284 PIEALIRRDIATETKP 299
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 337 bits (863), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 203/256 (79%), Gaps = 1/256 (0%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
MGKGGVGKSSTVNSVIGE+ V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN
Sbjct: 44 MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
QA+ +IK FLLN TIDVLLY DRLD YRVDDLDRQ++ A+T FGK+IW+KS LVLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
Q PPDGLNY+ + SKRS+ALLK I+ GA L K + + +++PV LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILK 239
ILP G +WIP L IT+++ N +K+I VDKKL++G +++GK IP + Q+ L++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283
Query: 240 WIEGAIKSDIAKDKKP 255
+ AIKSD++++ KP
Sbjct: 284 PLVRAIKSDVSRESKP 299
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---G 57
+GK GVGKS+T+NS+ E ++ ++FQ + + G + +IDTPGL+ +
Sbjct: 462 LGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQ 521
Query: 58 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
+ N + L+ ++ F+ D++LY DRLD D D +++ +T FG IW +++ L
Sbjct: 522 HKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGL 581
Query: 118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
THA PPDG N YD++ ++RS + + IR AG + PV+LVEN C
Sbjct: 582 THAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 636
Query: 173 SKNENDEKILPNGNAWIPTLV 193
N +++LPNG W P L+
Sbjct: 637 RTNRAGQRVLPNGQVWKPHLL 657
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---G 57
+GK GVGKS+T+NS+ E ++FQ R V G + +IDTPGL+ +
Sbjct: 580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639
Query: 58 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
N + L +K F+ D++LY DRLD D D +++ ++ FG IW +++ L
Sbjct: 640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699
Query: 118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
THA PPDG N YD++ ++RS + + IR AG + PV+LVEN C
Sbjct: 700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 754
Query: 173 SKNENDEKILPNGNAWIPTLV 193
N +++LPNG W P L+
Sbjct: 755 RTNRAGQRVLPNGQVWKPHLL 775
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 12/203 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-- 58
+GK GVGKS+T+NS++G ++ ++++F +S + G + IDTPGL A
Sbjct: 861 LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920
Query: 59 -VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
N + L +K + D++LY DRLD D + +++ +T + G IW+ +++ L
Sbjct: 921 STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980
Query: 118 THAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAV--PVALVENSG 170
THA PPDG L+YDV+ ++ S + ++I G +G + ++ PV+LVEN
Sbjct: 981 THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSI--GQAVGDLRLMNPSLMNPVSLVENHP 1038
Query: 171 RCSKNENDEKILPNGNAWIPTLV 193
C KN K+LPNG W L+
Sbjct: 1039 LCRKNREGVKVLPNGQTWRSQLL 1061
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 17/224 (7%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--Y 58
+G+ GVGKSST+N+V G + V+S +S P SR GF LNIIDTPG +++
Sbjct: 157 LGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215
Query: 59 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
V+ + I+ +L KTI +L+ ++ R D + +I T G Q+WR + +VLT
Sbjct: 216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275
Query: 119 HAQLCPPDGLNYDVYCS--------KRSDALLKTIR-----LGAGLGKHEFEDYAVPVAL 165
+A PD YD + K +A R + A L + ++ +PV
Sbjct: 276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334
Query: 166 VENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVV 209
+ENS RC +NE +++L +G + L+ G+ + K+ + +
Sbjct: 335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMVDPKTAFLFM 378
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL----VEA 56
+GK GVGKS+T+NS+ G+ ++F+ R V + G + IDTPG +
Sbjct: 172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231
Query: 57 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
N + L IK ++ + DV+LY DRLD + D +++ +T FG IW ++LV
Sbjct: 232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291
Query: 117 LTHAQLCPP----DGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
+TH+ +NY+ Y +R D + I K E PV LVEN C
Sbjct: 292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLVENHPSC 346
Query: 173 SKNENDEKILPNGNAWIPTLV 193
KN E +LPNG W P +
Sbjct: 347 KKNLAGEYVLPNGVVWKPQFM 367
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTLNIIDTPGLV 54
+GK G GKS+T NS++G RV F+S+ + RPV + +G G L +IDTP ++
Sbjct: 99 VGKSGSGKSATGNSILGRRV-----FESKLSARPVTQAFQQGCRAWEGRELQVIDTPDIL 153
Query: 55 E---AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
AG+ Q + L K VLL R + D+Q+ + FGK I
Sbjct: 154 SPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLEEVFGKGILA 210
Query: 112 KSLLVLTHAQLCPPDGLNYDVY 133
+++LV T + DG + + Y
Sbjct: 211 RTILVFTRKEDL--DGRSLETY 230
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGFTLNIIDTPGLV--EAG 57
+G+ G GKS+T NS++G++ R + SR G+ + ++DTP + E
Sbjct: 9 VGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIFSSEIP 68
Query: 58 YVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
+ +E + F+L+ LL +L + + D Q + AV FGKQ+ ++++V
Sbjct: 69 RTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQD--SQALAAVKRLFGKQVMARTVVV 126
Query: 117 LTHAQLCPPDGLNYDVYCS 135
T + D L V+C+
Sbjct: 127 FTRQEDLAGDSLQDYVHCT 145
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVM-----VSRSKGGFTLNIIDTPGLV 54
MGK G GKS+T NS++G V F+S+ + RPV SR G L +IDTP ++
Sbjct: 46 MGKTGSGKSATGNSILGRDV-----FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNIL 100
Query: 55 EAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
A + + +L+ +L +L R D D+Q+++ + FG + +
Sbjct: 101 SPQVSPEVADAICQAIVLSAPGPHAVLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHT 158
Query: 114 LLVLTHAQ 121
+LV T +
Sbjct: 159 ILVFTRKE 166
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTLNIIDTPGLV 54
+GK G GKS+T NS++G +V F+S+ + RPV ++ KG G L +IDTP ++
Sbjct: 108 VGKTGSGKSATGNSILGRQV-----FESKISARPVTMAFQKGSRELEGKELEVIDTPDIL 162
Query: 55 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114
+ I L + +L ++ Y + D++ + + FG I ++
Sbjct: 163 SPQNQPEATAKKICDILASPGPHAVLLVIQVGRYTTE--DQEAARCLQEIFGNGILAYTI 220
Query: 115 LVLTHAQ 121
LV T +
Sbjct: 221 LVFTRKE 227
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------GFTLNIIDTPGLV 54
+GK G GKS+T N+++G+ V F+S ++ R + G + +IDTP L
Sbjct: 54 LGKQGAGKSATGNTILGKAV-----FESRFSHHMVTKRCQSESVSVRGKQVIVIDTPDLF 108
Query: 55 EA-GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113
+ G Q L + L VLL + + D++ I+ + G FG Q +R
Sbjct: 109 SSLGCPEVQQQNLRQCLDLLADPYVLLLVTPIG--HSTEEDKKTIEGIQGVFGPQAYRHM 166
Query: 114 LLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI 145
++V T D L + K L++ I
Sbjct: 167 IVVFTREDELGEDTLQNHIESKKYLKKLIENI 198
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDTPGLVE 55
+G+ GVGKS+T N+++G R V+ +++ PV G TL+ ++DTP L +
Sbjct: 480 LGRSGVGKSATGNTILG-RPAFVSQLRAQ---PVTSRSQSGRRTLDWQDIVVVDTPSLNQ 535
Query: 56 AGYVNYQALEL---IKGFLLNKTIDVL-LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
+L IK LL + + ++ R D +++ + +F + I +
Sbjct: 536 MSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFEENIMK 595
Query: 112 KSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI------RLGAGLGKHEFEDYAVPVAL 165
+++ T + DG YD + + + +LK I R+ A K ED V
Sbjct: 596 YMIVLFTRKEDL-GDGDLYD-FTNNTKNKVLKRIFKKCKGRVCAFNNKETGEDQETQVKA 653
Query: 166 VENSGRCSKNENDEKILPNGNAWIPTLVKGITDVAT 201
+ K DE + +W+ L + + T
Sbjct: 654 LLTIANDLKRSYDE----HSTSWMDQLKSAVGQITT 685
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGL----V 54
MGK GVGKS+ NS++G++V + + + S S+ IID+P + +
Sbjct: 289 MGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSRLWNQKKFLIIDSPEISSWKL 348
Query: 55 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114
+ V FLL + L + D IIK + FG++ + ++
Sbjct: 349 DESDVKEHTFPGPHAFLLVTPLGSSL--------KSGDSVFSIIKRI---FGEKFIKFTI 397
Query: 115 LVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 150
++ T + +G + D + +K +DAL I++ G
Sbjct: 398 ILFTRKE--DFEGQDLDTF-TKENDALCNLIQIFEG 430
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 56
+G+ VGKSS VN++ GER V+ + R V V G L ++DTPG+ A
Sbjct: 18 IGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGIAAA 73
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTLNIIDTPGLV 54
+GK G GKS+T NS++G + +F+S+ + RPV + KG G L +IDTP +
Sbjct: 109 VGKTGSGKSATGNSILGRQ-----AFESKISARPVTTTFQKGTREFEGKELEVIDTPDIF 163
Query: 55 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114
+ I L + +L ++ Y + D+ + + + FG I ++
Sbjct: 164 SPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTILAYTI 221
Query: 115 LVLTHAQ 121
LV T +
Sbjct: 222 LVFTRKE 228
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGY 58
+GK G GKSST NS++GE+V + ++++ V R G L ++DTPG+ +
Sbjct: 36 LGKTGAGKSSTGNSILGEKVFN-SGICAKSITKVCEKRVSTWDGKELVVVDTPGIFDTEV 94
Query: 59 VNYQALELIKGF--LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
+ I + L + LL L Y V+ + + + + FGKQ R +L+
Sbjct: 95 PDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDMFGKQARRFMILL 152
Query: 117 LT 118
LT
Sbjct: 153 LT 154
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GK VGKSS VN ++G+ V V+ + K G N+IDT GL + V
Sbjct: 183 IGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKSRVK 242
Query: 61 -----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 97
Y AL IK ++++ V++ D L+ V + D++I
Sbjct: 243 EATEYYSALRTIKA--IDRSDGVIMMIDALEG--VTEQDKKI 280
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------GFTLNIIDTPGL- 53
+GK G GKS+T N+++G+ V F+S+ ++ R + G + +IDTP L
Sbjct: 54 LGKQGAGKSATGNTILGKAV-----FESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLF 108
Query: 54 --VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
+ V Q L+ L + VLL + Y + DR+ I+ + G G + +R
Sbjct: 109 SSLSCSEVRQQNLKQCLELLADDHC-VLLLVTPIGHYTEE--DRETIEGIWGKIGPKAYR 165
Query: 112 KSLLVLTHAQLCPPDGL-NY 130
++V T D L NY
Sbjct: 166 HMIVVFTREDELDEDSLWNY 185
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTP 51
MGK GVGKS+ NS++G++V + + + S S+ G + IID+P
Sbjct: 290 MGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSP 342
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDTPGLVE 55
+G+ G GKS+T N+++G F +PV S G TL+ ++DTP ++
Sbjct: 481 LGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFIQ 536
Query: 56 A 56
Sbjct: 537 T 537
>sp|Q1LLJ5|DER_RALME GTPase Der OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=der PE=3 SV=1
Length = 447
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V +GG +IDT GL + G V
Sbjct: 186 VGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRKRGKV- 244
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 245 ---FEAIEKFSVVKTL 257
>sp|Q46ZI7|DER_CUPPJ GTPase Der OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=der PE=3 SV=1
Length = 447
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V +GG +IDT GL G V
Sbjct: 186 VGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKV- 244
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 245 ---FEAIEKFSVVKTL 257
>sp|B3R1J8|DER_CUPTR GTPase Der OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
GN=der PE=3 SV=1
Length = 447
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V +GG +IDT GL G V
Sbjct: 186 VGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKV- 244
Query: 61 YQALELIKGFLLNKTIDVLLYAD 83
E I+ F + KT+ + A+
Sbjct: 245 ---FEAIEKFSVVKTLQSIADAN 264
>sp|B1X0B0|DER_CYAA5 GTPase Der OS=Cyanothece sp. (strain ATCC 51142) GN=der PE=3 SV=1
Length = 452
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS +N+ +GE+ V+ + +G T +IDT G+ VN
Sbjct: 182 IGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAGIRRKKNVN 241
Query: 61 YQALELIKGFLLNKTIDVLLYAD 83
Y A + F +N+ + AD
Sbjct: 242 YGA----EFFSINRAFKAIRRAD 260
>sp|Q6KH82|MNME_MYCMO tRNA modification GTPase MnmE OS=Mycoplasma mobile (strain ATCC
43663 / 163K / NCTC 11711) GN=mnmE PE=3 SV=1
Length = 442
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+GK VGKSS +N+++ E V + + S GF +I DT GL E N
Sbjct: 221 VGKPNVGKSSLLNALLNEERAIVTNEAGTTRDVIEASFQIDGFLFSISDTAGLREVQN-N 279
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRKSLL 115
+ L + K F + D++L+ + + +D D+QI IK+ + K + +K L+
Sbjct: 280 IENLGIQKTFETIEKSDIILHIIQPNEAE-NDFDKQIEIKSKNKIYLKILNKKDLI 334
>sp|Q13X32|DER_BURXL GTPase Der OS=Burkholderia xenovorans (strain LB400) GN=der PE=3
SV=1
Length = 445
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ +N+++GE V + V +GG +IDT GL G V
Sbjct: 185 VGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGLRRRGKV- 243
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 244 ---FEAIEKFSVVKTL 256
>sp|A1K3Z3|DER_AZOSB GTPase Der OS=Azoarcus sp. (strain BH72) GN=der PE=3 SV=1
Length = 442
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN+++GE V + + +GG +IDT GL G V
Sbjct: 182 VGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAIAIPFERGGKQYTLIDTAGLRRRGKV- 240
Query: 61 YQALELIKGFLLNKTIDVLLYAD 83
E ++ F + KT+ + A+
Sbjct: 241 ---FEAVEKFSVIKTLQAIQEAN 260
>sp|B2SXS6|DER_BURPP GTPase Der OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=der PE=3 SV=1
Length = 445
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ +N+++GE V + V +GG +IDT GL G V
Sbjct: 185 VGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGLRRRGKV- 243
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 244 ---FEAIEKFSVVKTL 256
>sp|A6LL68|ERA_THEM4 GTPase Era OS=Thermosipho melanesiensis (strain BI429 / DSM
12029) GN=era PE=3 SV=1
Length = 299
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58
GK VGKSS VN+++G +V+ V+ + V + F + +DTPG+ + Y
Sbjct: 10 GKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGIHKPLY 66
>sp|B7IH25|ERA_THEAB GTPase Era OS=Thermosipho africanus (strain TCF52B) GN=era PE=3
SV=1
Length = 299
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58
GK VGKSS VN+++G++++ V+ + V + F + +DTPG+ + Y
Sbjct: 10 GKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTPGIHKPLY 66
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN+++GE V + + + G T IIDT G+ VN
Sbjct: 180 IGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFEREGHTYTIIDTAGVRRRAKVN 239
Query: 61 YQALELIKGFLLNKTIDVL 79
E+++ F + KT+ +
Sbjct: 240 ----EMLEKFSVIKTMKAI 254
>sp|Q5HVB3|ERA_CAMJR GTPase Era OS=Campylobacter jejuni (strain RM1221) GN=era PE=3
SV=1
Length = 291
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV--MVSRSKGGFTLNIIDTPGLVEAG 57
+G+ GKS+ +NS++ E++ V+ Q+ R + +V K IDTPGL E+G
Sbjct: 9 IGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIF--IDTPGLHESG 65
>sp|Q5ZJD3|LSG1_CHICK Large subunit GTPase 1 homolog OS=Gallus gallus GN=LSG1 PE=2 SV=1
Length = 653
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 17/78 (21%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+G VGKSST+N+++G++ V+V++ FQ+ + P L + D PGL
Sbjct: 387 VGYPNVGKSSTINTILGDKKVSVSATPGRTKHFQTLYVEP----------GLCLCDCPGL 436
Query: 54 VEAGYVNYQALELIKGFL 71
V +V+ +A + G L
Sbjct: 437 VMPSFVSTKAEMICSGIL 454
>sp|A5N6N6|ERA_CLOK5 GTPase Era OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
NCIMB 10680) GN=era PE=3 SV=1
Length = 293
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+G+ VGKS+ +NS++GE++ V+ + ++ F L +DTPG+
Sbjct: 10 IGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B9E055|ERA_CLOK1 GTPase Era OS=Clostridium kluyveri (strain NBRC 12016) GN=era
PE=3 SV=1
Length = 293
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53
+G+ VGKS+ +NS++GE++ V+ + ++ F L +DTPG+
Sbjct: 10 IGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++GE+ V V++ + + + + G I+DT G+ G V
Sbjct: 180 IGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV- 238
Query: 61 YQALE 65
Y+ E
Sbjct: 239 YEKTE 243
>sp|A9AH00|DER_BURM1 GTPase Der OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=der PE=3 SV=1
Length = 445
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V + G +IDT GL +G V
Sbjct: 185 VGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLRRSGKV- 243
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 244 ---FEAIEKFSVVKTL 256
>sp|B2U9V3|DER_RALPJ GTPase Der OS=Ralstonia pickettii (strain 12J) GN=der PE=3 SV=1
Length = 447
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V + G +IDT GL + G V
Sbjct: 186 VGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRGKV- 244
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 245 ---FEAIEKFSVVKTL 257
>sp|Q8Y026|DER_RALSO GTPase Der OS=Ralstonia solanacearum (strain GMI1000) GN=der PE=3
SV=1
Length = 447
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V + G +IDT GL + G V
Sbjct: 186 VGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRGKV- 244
Query: 61 YQALELIKGFLLNKTIDVLLYAD 83
E I+ F + KT+ + A+
Sbjct: 245 ---FEAIEKFSVVKTLQSIADAN 264
>sp|P52131|YFJP_ECOLI Uncharacterized protein YfjP OS=Escherichia coli (strain K12)
GN=yfjP PE=4 SV=4
Length = 287
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
MGK G GKSS N++ V V+ + P+ G + I+D PG+ E+G +
Sbjct: 42 MGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESGVRD 101
Query: 61 YQALELIKGFLLNKTIDVLLYADRLD--AYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVL 117
+ L + L +D++L+ + D A D+ RQ+I G+ K L V+
Sbjct: 102 TEYAALYREQL--PRLDLILWLIKADDRALATDEHFYRQVI-------GEAYRHKMLFVI 152
Query: 118 THAQLCPP 125
+ + P
Sbjct: 153 SQSDKAEP 160
>sp|Q24M98|MNME_DESHY tRNA modification GTPase MnmE OS=Desulfitobacterium hafniense
(strain Y51) GN=mnmE PE=3 SV=1
Length = 459
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 56
+G+ VGKSS +N+++GE V + S + GG L ++DT GL E+
Sbjct: 225 VGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRES 280
>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
Length = 353
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 33/167 (19%)
Query: 2 GKGGVGKSSTVNSVIGERV---------VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 52
G+ G GKS+T NS++ +V VT+ +A+ P G LN+IDTPG
Sbjct: 49 GRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTP-------EGPILNVIDTPG 101
Query: 53 LVEAGYVNYQALELIKGFLLNKTIDVLLYADR-LDAY--------RVDDLDRQIIKAVTG 103
L + L + F+ + + L AD L A R+ + ++ +
Sbjct: 102 LFD--------LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQV 153
Query: 104 TFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 150
FG +I ++V T + DG+ + Y LK + + G
Sbjct: 154 LFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCG 200
>sp|Q10190|LSG1_SCHPO Large subunit GTPase 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=lsg1 PE=3 SV=1
Length = 616
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G VGKSST+N+++G + V+V+S + ++ S+ ++++D PGLV +
Sbjct: 307 VGYPNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSE---KVSLLDCPGLVFPSFAT 363
Query: 61 YQALELIKGFL 71
QA ++ G L
Sbjct: 364 TQADLVLDGVL 374
>sp|B1YR40|DER_BURA4 GTPase Der OS=Burkholderia ambifaria (strain MC40-6) GN=der PE=3
SV=1
Length = 445
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKS+ VN++IGE V + V + G +IDT GL G V
Sbjct: 185 VGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLRRRGKV- 243
Query: 61 YQALELIKGFLLNKTI 76
E I+ F + KT+
Sbjct: 244 ---FEAIEKFSVVKTL 256
>sp|Q119L7|DER_TRIEI GTPase Der OS=Trichodesmium erythraeum (strain IMS101) GN=der PE=3
SV=1
Length = 453
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS +NS IGE+ V+ + + G T +IDT G+ + V
Sbjct: 182 VGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGIRKKKNVE 241
Query: 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 94
Y A + F +N+ + A+ + + +D LD
Sbjct: 242 YGA----EFFGINRAFKAIRRAEVV-MFVIDALD 270
>sp|Q6HL51|DER_BACHK GTPase Der OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|Q63DM8|DER_BACCZ GTPase Der OS=Bacillus cereus (strain ZK / E33L) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|Q81FR5|DER_BACCR GTPase Der OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=der
PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|B9IVM6|DER_BACCQ GTPase Der OS=Bacillus cereus (strain Q1) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|B7HL14|DER_BACC7 GTPase Der OS=Bacillus cereus (strain AH187) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|B7HHQ7|DER_BACC4 GTPase Der OS=Bacillus cereus (strain B4264) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
>sp|C1EN01|DER_BACC3 GTPase Der OS=Bacillus cereus (strain 03BB102) GN=der PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
+G+ VGKSS VN+++G+ V V++ V SK G IIDT G+ + G V
Sbjct: 181 IGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV- 239
Query: 61 YQALE 65
Y++ E
Sbjct: 240 YESTE 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,345,367
Number of Sequences: 539616
Number of extensions: 4369070
Number of successful extensions: 14600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 13885
Number of HSP's gapped (non-prelim): 969
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)