Query 025189
Match_columns 256
No_of_seqs 252 out of 1946
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 6.3E-60 1.4E-64 409.6 24.2 256 1-256 44-300 (313)
2 TIGR00993 3a0901s04IAP86 chlor 100.0 2.6E-46 5.6E-51 347.1 20.4 245 1-245 124-378 (763)
3 cd01853 Toc34_like Toc34-like 100.0 1.6E-37 3.5E-42 265.6 18.0 209 1-210 37-249 (249)
4 PF04548 AIG1: AIG1 family; I 100.0 5.3E-30 1.1E-34 215.0 14.4 176 1-180 6-200 (212)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 1E-26 2.2E-31 192.7 17.3 146 1-150 6-154 (196)
6 COG3596 Predicted GTPase [Gene 99.9 2.7E-23 5.9E-28 175.5 12.1 182 1-210 45-231 (296)
7 PF05049 IIGP: Interferon-indu 99.8 2.4E-22 5.2E-27 179.2 -0.9 196 1-227 41-250 (376)
8 cd04104 p47_IIGP_like p47 (47- 99.8 1.1E-18 2.4E-23 144.8 9.8 181 1-209 7-192 (197)
9 PF01926 MMR_HSR1: 50S ribosom 99.8 7.6E-18 1.7E-22 127.7 12.4 110 1-119 5-116 (116)
10 COG1159 Era GTPase [General fu 99.8 8E-18 1.7E-22 144.2 12.3 117 1-125 12-129 (298)
11 COG1160 Predicted GTPases [Gen 99.7 1.8E-17 4E-22 149.2 12.1 115 1-123 9-125 (444)
12 PF02421 FeoB_N: Ferrous iron 99.7 3E-17 6.5E-22 130.5 10.9 117 1-127 6-122 (156)
13 cd01894 EngA1 EngA1 subfamily. 99.7 2.3E-16 4.9E-21 124.6 12.8 115 1-123 3-118 (157)
14 COG0486 ThdF Predicted GTPase 99.7 6.8E-16 1.5E-20 139.4 12.1 115 1-124 223-338 (454)
15 TIGR00436 era GTP-binding prot 99.7 1.1E-15 2.4E-20 132.7 12.7 114 1-123 6-120 (270)
16 COG1160 Predicted GTPases [Gen 99.7 3.7E-16 7.9E-21 140.8 9.5 126 1-132 184-311 (444)
17 PRK00089 era GTPase Era; Revie 99.6 2.2E-15 4.7E-20 132.3 13.2 115 1-123 11-126 (292)
18 cd01879 FeoB Ferrous iron tran 99.6 4.5E-15 9.9E-20 117.4 13.7 113 1-123 2-114 (158)
19 cd04164 trmE TrmE (MnmE, ThdF, 99.6 7.5E-15 1.6E-19 115.7 13.8 114 1-124 7-121 (157)
20 cd01881 Obg_like The Obg-like 99.6 1.4E-15 3E-20 122.6 9.7 116 1-123 2-133 (176)
21 COG0218 Predicted GTPase [Gene 99.6 3.6E-15 7.8E-20 121.5 12.0 114 1-124 30-149 (200)
22 cd01850 CDC_Septin CDC/Septin. 99.6 7.9E-15 1.7E-19 127.7 14.8 116 1-123 10-156 (276)
23 cd01898 Obg Obg subfamily. Th 99.6 3.4E-15 7.3E-20 119.8 11.5 116 1-123 6-127 (170)
24 TIGR03594 GTPase_EngA ribosome 99.6 6.9E-15 1.5E-19 135.6 14.6 116 1-124 5-121 (429)
25 TIGR03598 GTPase_YsxC ribosome 99.6 9.5E-15 2.1E-19 119.1 13.7 114 1-123 24-142 (179)
26 cd01897 NOG NOG1 is a nucleola 99.6 1.2E-14 2.7E-19 116.4 12.9 117 1-123 6-126 (168)
27 cd04163 Era Era subfamily. Er 99.6 1.5E-14 3.3E-19 114.5 13.1 115 1-123 9-124 (168)
28 cd01895 EngA2 EngA2 subfamily. 99.6 2E-14 4.2E-19 115.0 13.1 118 1-124 8-127 (174)
29 PRK15494 era GTPase Era; Provi 99.6 1.6E-14 3.4E-19 129.4 13.7 115 1-123 58-173 (339)
30 cd00880 Era_like Era (E. coli 99.6 3.7E-14 7.9E-19 110.9 13.6 115 1-123 2-117 (163)
31 TIGR03594 GTPase_EngA ribosome 99.6 1.9E-14 4.2E-19 132.7 13.9 117 1-123 178-296 (429)
32 PRK00093 GTP-binding protein D 99.6 2E-14 4.2E-19 132.9 13.9 115 1-123 7-122 (435)
33 PRK03003 GTP-binding protein D 99.6 2.6E-14 5.6E-19 133.4 13.6 115 1-123 44-159 (472)
34 PRK12299 obgE GTPase CgtA; Rev 99.6 3.5E-14 7.5E-19 126.7 13.5 116 1-123 164-284 (335)
35 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.8E-14 8.2E-19 130.9 13.3 114 1-123 209-323 (442)
36 PRK12298 obgE GTPase CgtA; Rev 99.6 3.3E-14 7.2E-19 129.2 12.7 116 1-123 165-288 (390)
37 PRK03003 GTP-binding protein D 99.6 4.7E-14 1E-18 131.7 14.0 117 1-123 217-335 (472)
38 TIGR03156 GTP_HflX GTP-binding 99.6 4.6E-14 1E-18 126.7 13.1 118 1-123 195-314 (351)
39 PRK12297 obgE GTPase CgtA; Rev 99.5 1E-13 2.2E-18 126.9 13.1 115 1-122 164-286 (424)
40 PRK05291 trmE tRNA modificatio 99.5 9.6E-14 2.1E-18 128.7 13.0 113 1-123 221-334 (449)
41 PRK00093 GTP-binding protein D 99.5 1.5E-13 3.2E-18 127.1 14.2 117 1-123 179-297 (435)
42 TIGR02729 Obg_CgtA Obg family 99.5 9.7E-14 2.1E-18 123.6 12.4 116 1-123 163-286 (329)
43 cd01861 Rab6 Rab6 subfamily. 99.5 2.8E-13 6.1E-18 107.6 14.0 111 1-123 6-118 (161)
44 cd01878 HflX HflX subfamily. 99.5 1.8E-13 3.9E-18 113.6 12.9 118 1-123 47-166 (204)
45 COG1084 Predicted GTPase [Gene 99.5 1E-13 2.2E-18 120.2 11.6 112 2-123 175-293 (346)
46 PRK09518 bifunctional cytidyla 99.5 2E-13 4.4E-18 133.2 14.2 115 1-123 281-396 (712)
47 PRK11058 GTPase HflX; Provisio 99.5 3E-13 6.4E-18 124.3 13.2 117 1-123 203-322 (426)
48 cd04171 SelB SelB subfamily. 99.5 5.1E-13 1.1E-17 106.2 12.8 109 1-123 6-117 (164)
49 PRK09518 bifunctional cytidyla 99.5 3.2E-13 7E-18 131.8 13.9 117 1-123 456-574 (712)
50 cd04140 ARHI_like ARHI subfami 99.5 3.7E-13 8E-18 107.9 11.5 112 1-123 7-121 (165)
51 cd01868 Rab11_like Rab11-like. 99.5 4.4E-13 9.5E-18 107.1 11.4 112 1-124 9-122 (165)
52 cd04136 Rap_like Rap-like subf 99.5 6.4E-13 1.4E-17 105.7 11.9 111 1-123 7-119 (163)
53 PRK12296 obgE GTPase CgtA; Rev 99.5 5.4E-13 1.2E-17 123.8 13.0 116 1-123 165-297 (500)
54 PRK00454 engB GTP-binding prot 99.5 1.6E-12 3.4E-17 106.9 14.3 114 1-123 30-148 (196)
55 cd01864 Rab19 Rab19 subfamily. 99.5 5.5E-13 1.2E-17 106.8 11.0 112 1-124 9-122 (165)
56 cd04119 RJL RJL (RabJ-Like) su 99.5 6.6E-13 1.4E-17 105.8 11.5 112 1-123 6-123 (168)
57 PF00735 Septin: Septin; Inte 99.5 7.5E-13 1.6E-17 115.4 12.5 117 1-123 10-155 (281)
58 cd04145 M_R_Ras_like M-Ras/R-R 99.5 9.9E-13 2.1E-17 104.7 12.1 111 1-123 8-120 (164)
59 cd01866 Rab2 Rab2 subfamily. 99.5 8.8E-13 1.9E-17 106.1 11.8 112 1-124 10-123 (168)
60 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 4E-13 8.8E-18 107.4 9.3 107 1-123 6-115 (168)
61 cd04144 Ras2 Ras2 subfamily. 99.4 1E-12 2.2E-17 108.1 11.5 112 1-123 5-119 (190)
62 cd01865 Rab3 Rab3 subfamily. 99.4 1.1E-12 2.4E-17 105.1 11.5 111 1-124 7-120 (165)
63 cd04142 RRP22 RRP22 subfamily. 99.4 2.4E-12 5.1E-17 106.9 13.7 119 1-123 6-129 (198)
64 cd04123 Rab21 Rab21 subfamily. 99.4 1.5E-12 3.3E-17 103.1 11.9 111 1-123 6-118 (162)
65 cd00154 Rab Rab family. Rab G 99.4 1.8E-12 3.9E-17 101.7 12.2 111 1-123 6-118 (159)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.4E-12 3.1E-17 104.3 11.7 111 1-123 8-120 (166)
67 cd04113 Rab4 Rab4 subfamily. 99.4 1.3E-12 2.8E-17 104.0 11.3 112 1-124 6-119 (161)
68 cd04120 Rab12 Rab12 subfamily. 99.4 1.5E-12 3.3E-17 108.4 12.1 110 1-123 6-118 (202)
69 cd01860 Rab5_related Rab5-rela 99.4 1E-12 2.2E-17 104.6 10.6 111 1-123 7-119 (163)
70 cd04176 Rap2 Rap2 subgroup. T 99.4 2.2E-12 4.7E-17 102.9 12.5 111 1-123 7-119 (163)
71 cd01867 Rab8_Rab10_Rab13_like 99.4 1.6E-12 3.5E-17 104.4 11.8 111 1-124 9-122 (167)
72 smart00174 RHO Rho (Ras homolo 99.4 1.3E-12 2.8E-17 105.3 11.2 109 1-123 4-115 (174)
73 KOG1191 Mitochondrial GTPase [ 99.4 8.7E-13 1.9E-17 119.5 10.9 122 1-123 274-402 (531)
74 smart00175 RAB Rab subfamily o 99.4 1.6E-12 3.4E-17 103.4 11.2 112 1-124 6-119 (164)
75 cd04106 Rab23_lke Rab23-like s 99.4 1.2E-12 2.7E-17 104.0 10.6 110 1-124 6-120 (162)
76 cd01896 DRG The developmentall 99.4 2.9E-12 6.3E-17 109.0 13.4 83 1-86 6-88 (233)
77 PRK04213 GTP-binding protein; 99.4 2.1E-12 4.5E-17 106.9 12.2 113 1-123 15-143 (201)
78 cd04160 Arfrp1 Arfrp1 subfamil 99.4 1.3E-12 2.8E-17 104.5 10.5 111 1-123 5-120 (167)
79 cd04112 Rab26 Rab26 subfamily. 99.4 1.8E-12 3.9E-17 106.7 11.5 111 1-123 6-119 (191)
80 cd04175 Rap1 Rap1 subgroup. T 99.4 2.1E-12 4.5E-17 103.2 11.5 111 1-123 7-119 (164)
81 PF00009 GTP_EFTU: Elongation 99.4 3.2E-12 6.9E-17 105.0 12.7 108 1-123 9-135 (188)
82 smart00173 RAS Ras subfamily o 99.4 2.4E-12 5.2E-17 102.6 11.7 111 1-123 6-118 (164)
83 cd00157 Rho Rho (Ras homology) 99.4 1E-12 2.2E-17 105.3 9.5 110 1-124 6-118 (171)
84 cd01874 Cdc42 Cdc42 subfamily. 99.4 2.1E-12 4.6E-17 104.9 11.1 109 1-123 7-118 (175)
85 cd04138 H_N_K_Ras_like H-Ras/N 99.4 2.5E-12 5.5E-17 101.8 11.3 111 1-123 7-119 (162)
86 cd00876 Ras Ras family. The R 99.4 1.9E-12 4.1E-17 102.3 10.4 112 1-124 5-118 (160)
87 PLN03118 Rab family protein; P 99.4 2.4E-12 5.1E-17 107.7 11.4 112 1-124 20-134 (211)
88 cd01876 YihA_EngB The YihA (En 99.4 5E-12 1.1E-16 100.3 12.7 114 1-123 5-123 (170)
89 cd04146 RERG_RasL11_like RERG/ 99.4 3.2E-12 6.8E-17 102.3 11.4 113 1-123 5-119 (165)
90 cd04122 Rab14 Rab14 subfamily. 99.4 3.6E-12 7.9E-17 102.2 11.7 111 1-124 8-121 (166)
91 COG0370 FeoB Fe2+ transport sy 99.4 2E-12 4.4E-17 121.7 11.6 118 1-130 9-128 (653)
92 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 4.3E-12 9.3E-17 102.8 12.1 111 1-123 8-120 (172)
93 cd04124 RabL2 RabL2 subfamily. 99.4 3.4E-12 7.3E-17 102.0 11.3 109 1-123 6-117 (161)
94 smart00178 SAR Sar1p-like memb 99.4 2.1E-12 4.6E-17 105.7 10.2 107 1-123 23-131 (184)
95 cd04117 Rab15 Rab15 subfamily. 99.4 4.9E-12 1.1E-16 101.2 12.1 111 1-123 6-118 (161)
96 TIGR00437 feoB ferrous iron tr 99.4 3.3E-12 7.2E-17 122.0 13.0 112 2-124 1-113 (591)
97 cd00881 GTP_translation_factor 99.4 1.7E-12 3.6E-17 105.5 9.5 109 1-124 5-128 (189)
98 cd04109 Rab28 Rab28 subfamily. 99.4 4.1E-12 8.8E-17 106.6 12.0 112 1-123 6-122 (215)
99 cd04143 Rhes_like Rhes_like su 99.4 3.8E-12 8.1E-17 109.2 11.9 113 1-124 6-127 (247)
100 PF00350 Dynamin_N: Dynamin fa 99.4 1.7E-12 3.7E-17 104.2 9.2 66 45-120 103-168 (168)
101 cd04158 ARD1 ARD1 subfamily. 99.4 5.5E-12 1.2E-16 101.7 12.0 108 1-123 5-113 (169)
102 cd04154 Arl2 Arl2 subfamily. 99.4 2.2E-12 4.8E-17 104.2 9.4 108 1-123 20-128 (173)
103 cd00877 Ran Ran (Ras-related n 99.4 3.6E-12 7.9E-17 102.5 10.5 108 1-123 6-117 (166)
104 COG5019 CDC3 Septin family pro 99.4 4.8E-12 1E-16 111.4 11.9 118 1-124 29-176 (373)
105 cd01862 Rab7 Rab7 subfamily. 99.4 6.8E-12 1.5E-16 100.6 12.0 114 1-124 6-123 (172)
106 cd04125 RabA_like RabA-like su 99.4 3.1E-12 6.7E-17 104.8 10.2 111 1-123 6-118 (188)
107 cd01893 Miro1 Miro1 subfamily. 99.4 3.7E-12 7.9E-17 102.3 10.3 108 1-123 6-116 (166)
108 cd00878 Arf_Arl Arf (ADP-ribos 99.4 3.5E-12 7.6E-17 101.2 9.9 108 1-123 5-113 (158)
109 cd04134 Rho3 Rho3 subfamily. 99.4 4.5E-12 9.8E-17 104.2 10.7 109 1-123 6-117 (189)
110 cd04101 RabL4 RabL4 (Rab-like4 99.4 5.4E-12 1.2E-16 100.6 10.8 111 1-123 6-120 (164)
111 cd04157 Arl6 Arl6 subfamily. 99.4 4.1E-12 9E-17 100.9 10.1 112 1-123 5-117 (162)
112 cd04110 Rab35 Rab35 subfamily. 99.4 8.8E-12 1.9E-16 103.3 12.4 110 1-124 12-124 (199)
113 cd04118 Rab24 Rab24 subfamily. 99.4 6.1E-12 1.3E-16 103.4 11.4 110 1-123 6-118 (193)
114 cd04114 Rab30 Rab30 subfamily. 99.4 7E-12 1.5E-16 100.4 11.4 111 1-123 13-125 (169)
115 cd01891 TypA_BipA TypA (tyrosi 99.4 3.1E-12 6.8E-17 105.5 9.5 108 1-123 8-130 (194)
116 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 5.5E-12 1.2E-16 102.0 10.6 110 1-123 6-119 (170)
117 PRK09554 feoB ferrous iron tra 99.4 7.7E-12 1.7E-16 122.4 13.6 116 1-125 9-127 (772)
118 cd04161 Arl2l1_Arl13_like Arl2 99.4 7.8E-12 1.7E-16 100.7 11.4 109 1-123 5-113 (167)
119 cd04131 Rnd Rnd subfamily. Th 99.4 6.4E-12 1.4E-16 102.5 10.9 109 1-123 7-118 (178)
120 cd04166 CysN_ATPS CysN_ATPS su 99.4 5.1E-12 1.1E-16 105.6 10.5 109 1-123 5-143 (208)
121 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.2E-11 2.5E-16 102.7 12.6 112 1-123 6-123 (201)
122 KOG1547 Septin CDC10 and relat 99.4 3.8E-12 8.3E-17 105.9 9.4 119 1-125 52-199 (336)
123 cd04177 RSR1 RSR1 subgroup. R 99.4 1.5E-11 3.2E-16 98.8 12.6 112 1-124 7-120 (168)
124 cd01884 EF_Tu EF-Tu subfamily. 99.4 2.8E-11 6.1E-16 100.2 14.5 109 1-123 8-131 (195)
125 cd01871 Rac1_like Rac1-like su 99.4 7.9E-12 1.7E-16 101.5 11.0 109 1-123 7-118 (174)
126 cd04130 Wrch_1 Wrch-1 subfamil 99.4 6.1E-12 1.3E-16 101.7 10.2 109 1-123 6-117 (173)
127 PLN03110 Rab GTPase; Provision 99.4 9.9E-12 2.2E-16 104.5 11.8 111 1-123 18-130 (216)
128 cd04151 Arl1 Arl1 subfamily. 99.4 4.3E-12 9.4E-17 100.9 9.2 108 1-123 5-113 (158)
129 cd04133 Rop_like Rop subfamily 99.3 1.2E-11 2.6E-16 100.8 11.8 109 1-123 7-118 (176)
130 cd04127 Rab27A Rab27a subfamil 99.3 6.9E-12 1.5E-16 101.7 10.5 111 1-124 10-134 (180)
131 cd01863 Rab18 Rab18 subfamily. 99.3 8.1E-12 1.8E-16 99.3 10.7 112 1-123 6-119 (161)
132 cd00882 Ras_like_GTPase Ras-li 99.3 7.3E-12 1.6E-16 96.5 10.1 111 1-124 2-116 (157)
133 TIGR00231 small_GTP small GTP- 99.3 1.4E-11 3E-16 96.2 11.7 111 1-123 7-121 (161)
134 KOG1489 Predicted GTP-binding 99.3 4.2E-12 9.1E-17 109.6 9.4 116 1-123 202-325 (366)
135 PTZ00369 Ras-like protein; Pro 99.3 1E-11 2.2E-16 102.1 11.4 111 1-123 11-123 (189)
136 cd04135 Tc10 TC10 subfamily. 99.3 8.5E-12 1.8E-16 100.5 10.7 109 1-123 6-117 (174)
137 cd04126 Rab20 Rab20 subfamily. 99.3 1.5E-11 3.2E-16 103.8 12.5 109 1-124 6-114 (220)
138 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.1E-11 2.4E-16 99.9 11.3 113 1-123 8-122 (170)
139 cd04147 Ras_dva Ras-dva subfam 99.3 7.9E-12 1.7E-16 103.5 10.6 111 1-123 5-117 (198)
140 cd04121 Rab40 Rab40 subfamily. 99.3 1.3E-11 2.8E-16 101.7 11.7 109 1-123 12-123 (189)
141 cd04132 Rho4_like Rho4-like su 99.3 6.4E-12 1.4E-16 102.7 9.8 109 1-123 6-118 (187)
142 PF08477 Miro: Miro-like prote 99.3 1.7E-12 3.6E-17 98.3 5.5 112 1-121 5-119 (119)
143 cd04149 Arf6 Arf6 subfamily. 99.3 6.4E-12 1.4E-16 101.4 9.2 108 1-123 15-123 (168)
144 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.3E-11 2.8E-16 100.0 10.9 109 1-123 21-129 (174)
145 cd04159 Arl10_like Arl10-like 99.3 8.5E-12 1.8E-16 98.0 9.5 110 1-123 5-114 (159)
146 cd04156 ARLTS1 ARLTS1 subfamil 99.3 8.4E-12 1.8E-16 99.1 9.4 108 1-123 5-114 (160)
147 cd04150 Arf1_5_like Arf1-Arf5- 99.3 1E-11 2.2E-16 99.3 9.6 108 1-123 6-114 (159)
148 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.4E-11 3E-16 99.0 10.5 108 1-123 5-112 (164)
149 smart00177 ARF ARF-like small 99.3 1.7E-11 3.6E-16 99.6 11.1 107 1-123 19-127 (175)
150 cd04139 RalA_RalB RalA/RalB su 99.3 2.6E-11 5.6E-16 96.3 11.9 111 1-123 6-118 (164)
151 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1.5E-11 3.3E-16 100.7 10.7 109 1-123 11-122 (182)
152 KOG2655 Septin family protein 99.3 1.1E-11 2.3E-16 109.9 10.4 118 1-124 27-172 (366)
153 cd01870 RhoA_like RhoA-like su 99.3 1.6E-11 3.6E-16 98.9 10.6 109 1-123 7-118 (175)
154 cd01889 SelB_euk SelB subfamil 99.3 3.3E-11 7.2E-16 99.2 12.5 108 1-123 6-133 (192)
155 cd04137 RheB Rheb (Ras Homolog 99.3 2E-11 4.4E-16 99.0 11.0 111 1-123 7-119 (180)
156 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.5E-11 3.2E-16 100.6 10.1 111 1-123 9-122 (183)
157 cd04116 Rab9 Rab9 subfamily. 99.3 1.8E-11 4E-16 98.3 10.5 113 1-123 11-127 (170)
158 PTZ00133 ADP-ribosylation fact 99.3 1.9E-11 4.1E-16 100.0 10.6 106 1-123 23-131 (182)
159 cd01890 LepA LepA subfamily. 99.3 1.4E-11 3E-16 99.7 9.7 108 1-123 6-132 (179)
160 cd04148 RGK RGK subfamily. Th 99.3 2E-11 4.3E-16 103.0 10.9 111 1-124 6-120 (221)
161 cd01892 Miro2 Miro2 subfamily. 99.3 7.3E-11 1.6E-15 95.2 13.8 109 1-123 10-121 (169)
162 KOG1423 Ras-like GTPase ERA [C 99.3 1.4E-11 3E-16 106.0 9.8 116 1-123 78-198 (379)
163 cd01875 RhoG RhoG subfamily. 99.3 2.2E-11 4.9E-16 100.3 10.6 109 1-123 9-120 (191)
164 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 2.5E-11 5.5E-16 103.1 11.2 109 1-123 19-130 (232)
165 PLN00223 ADP-ribosylation fact 99.3 2.3E-11 5.1E-16 99.4 10.5 107 1-123 23-131 (181)
166 cd00879 Sar1 Sar1 subfamily. 99.3 1.3E-11 2.7E-16 101.2 8.9 108 1-123 25-133 (190)
167 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 2.2E-11 4.9E-16 102.8 10.6 109 1-123 7-118 (222)
168 PLN03071 GTP-binding nuclear p 99.3 2.1E-11 4.5E-16 102.8 10.3 109 1-123 19-130 (219)
169 CHL00071 tufA elongation facto 99.3 8.9E-11 1.9E-15 107.8 15.2 109 1-123 18-141 (409)
170 KOG0092 GTPase Rab5/YPT51 and 99.3 2E-11 4.3E-16 98.4 9.4 119 1-131 11-131 (200)
171 smart00176 RAN Ran (Ras-relate 99.3 2.6E-11 5.6E-16 100.8 10.5 109 1-123 1-112 (200)
172 PLN03108 Rab family protein; P 99.3 4.3E-11 9.4E-16 100.1 11.9 111 1-123 12-124 (210)
173 cd04111 Rab39 Rab39 subfamily. 99.3 3.6E-11 7.8E-16 100.7 11.4 113 1-124 8-123 (211)
174 cd04155 Arl3 Arl3 subfamily. 99.3 4E-11 8.7E-16 96.5 10.6 108 1-123 20-128 (173)
175 KOG0084 GTPase Rab1/YPT1, smal 99.3 3.4E-11 7.4E-16 97.3 9.8 115 1-127 15-131 (205)
176 cd04102 RabL3 RabL3 (Rab-like3 99.3 6.3E-11 1.4E-15 98.6 11.7 112 1-123 6-142 (202)
177 COG2262 HflX GTPases [General 99.3 5.3E-11 1.2E-15 106.3 11.7 118 1-123 198-317 (411)
178 cd04168 TetM_like Tet(M)-like 99.2 5.5E-11 1.2E-15 101.4 10.6 108 1-123 5-129 (237)
179 cd01886 EF-G Elongation factor 99.2 4.4E-11 9.6E-16 103.9 9.9 108 1-123 5-129 (270)
180 cd04128 Spg1 Spg1p. Spg1p (se 99.2 7.7E-11 1.7E-15 96.4 10.6 109 1-123 6-117 (182)
181 cd04129 Rho2 Rho2 subfamily. 99.2 1.1E-10 2.4E-15 95.6 11.3 109 1-123 7-118 (187)
182 cd04167 Snu114p Snu114p subfam 99.2 1.3E-10 2.8E-15 97.4 11.6 108 1-123 6-136 (213)
183 PF00071 Ras: Ras family; Int 99.2 4.1E-11 8.9E-16 95.3 8.1 111 1-124 5-118 (162)
184 PRK05306 infB translation init 99.2 1.3E-10 2.9E-15 113.5 12.0 107 1-123 296-402 (787)
185 cd04105 SR_beta Signal recogni 99.2 1.8E-10 3.8E-15 96.0 10.7 111 1-124 6-123 (203)
186 COG0536 Obg Predicted GTPase [ 99.2 1.7E-10 3.7E-15 100.8 10.6 116 1-123 165-288 (369)
187 cd01885 EF2 EF2 (for archaea a 99.2 4.8E-10 1E-14 94.6 13.2 108 1-123 6-138 (222)
188 cd04170 EF-G_bact Elongation f 99.2 1.2E-10 2.7E-15 100.9 9.3 108 1-123 5-129 (268)
189 KOG1490 GTP-binding protein CR 99.2 4.8E-11 1E-15 108.4 6.7 124 1-129 174-300 (620)
190 cd04169 RF3 RF3 subfamily. Pe 99.2 2.1E-10 4.6E-15 99.5 10.2 108 1-123 8-136 (267)
191 TIGR02528 EutP ethanolamine ut 99.2 1.2E-10 2.6E-15 90.8 7.8 96 1-123 6-101 (142)
192 PRK15467 ethanolamine utilizat 99.2 2E-10 4.3E-15 91.9 9.2 98 1-123 7-104 (158)
193 PLN00023 GTP-binding protein; 99.1 4E-10 8.7E-15 99.3 11.3 113 1-124 27-165 (334)
194 smart00053 DYNc Dynamin, GTPas 99.1 6.4E-10 1.4E-14 94.7 12.2 74 43-123 125-205 (240)
195 KOG0395 Ras-related GTPase [Ge 99.1 2.4E-10 5.2E-15 94.7 9.3 119 1-131 9-129 (196)
196 PLN03127 Elongation factor Tu; 99.1 1.7E-09 3.7E-14 100.2 16.0 108 1-123 67-190 (447)
197 TIGR00487 IF-2 translation ini 99.1 3.8E-10 8.2E-15 107.6 11.7 107 1-123 93-200 (587)
198 PRK12317 elongation factor 1-a 99.1 2.8E-10 6E-15 105.1 10.4 110 1-123 12-152 (425)
199 PRK09866 hypothetical protein; 99.1 1.3E-09 2.8E-14 102.9 14.5 73 43-123 230-302 (741)
200 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.1 4.3E-10 9.3E-15 90.9 9.4 120 1-132 28-150 (221)
201 cd04103 Centaurin_gamma Centau 99.1 8.4E-10 1.8E-14 88.2 11.1 105 1-123 6-112 (158)
202 PLN03126 Elongation factor Tu; 99.1 1.6E-09 3.5E-14 101.0 14.5 109 1-123 87-210 (478)
203 TIGR00475 selB selenocysteine- 99.1 1.4E-09 3E-14 103.9 14.2 109 1-123 6-116 (581)
204 COG1100 GTPase SAR1 and relate 99.1 3.8E-10 8.3E-15 94.3 9.0 112 1-124 11-125 (219)
205 cd01900 YchF YchF subfamily. 99.1 4.3E-10 9.4E-15 97.5 9.4 79 1-86 4-103 (274)
206 PRK10218 GTP-binding protein; 99.1 1.5E-09 3.2E-14 103.8 13.7 108 1-123 11-133 (607)
207 PRK12736 elongation factor Tu; 99.1 2.7E-09 5.9E-14 97.5 14.8 109 1-123 18-141 (394)
208 PRK00049 elongation factor Tu; 99.1 2.5E-09 5.4E-14 97.9 14.4 108 1-123 18-141 (396)
209 KOG0078 GTP-binding protein SE 99.1 8.4E-10 1.8E-14 90.4 9.9 112 1-124 18-131 (207)
210 KOG0087 GTPase Rab11/YPT3, sma 99.1 5.8E-10 1.3E-14 91.2 8.6 116 1-128 20-137 (222)
211 TIGR01394 TypA_BipA GTP-bindin 99.1 1.7E-09 3.7E-14 103.4 12.7 108 1-123 7-129 (594)
212 cd01873 RhoBTB RhoBTB subfamil 99.1 8E-10 1.7E-14 91.5 9.2 109 1-123 8-133 (195)
213 cd01888 eIF2_gamma eIF2-gamma 99.1 2.1E-09 4.6E-14 89.4 11.6 68 43-123 83-150 (203)
214 CHL00189 infB translation init 99.1 5.9E-10 1.3E-14 108.2 9.3 107 1-123 250-360 (742)
215 TIGR00485 EF-Tu translation el 99.1 6.6E-09 1.4E-13 95.1 15.7 109 1-123 18-141 (394)
216 TIGR00484 EF-G translation elo 99.0 1.3E-09 2.9E-14 106.3 11.5 108 1-123 16-140 (689)
217 TIGR00491 aIF-2 translation in 99.0 1E-09 2.2E-14 104.6 10.2 107 1-123 10-134 (590)
218 PF00025 Arf: ADP-ribosylation 99.0 8.3E-10 1.8E-14 89.8 8.3 107 1-123 20-128 (175)
219 KOG0098 GTPase Rab2, small G p 99.0 1.2E-09 2.6E-14 87.7 8.9 117 1-129 12-130 (216)
220 cd04165 GTPBP1_like GTPBP1-lik 99.0 3.9E-09 8.5E-14 89.3 12.5 72 39-123 80-151 (224)
221 KOG0079 GTP-binding protein H- 99.0 8.2E-10 1.8E-14 85.5 7.4 110 1-123 14-125 (198)
222 PRK09601 GTP-binding protein Y 99.0 1.4E-09 3E-14 97.6 9.6 79 1-86 8-107 (364)
223 cd01883 EF1_alpha Eukaryotic e 99.0 4.2E-09 9.1E-14 88.7 12.1 110 1-123 5-150 (219)
224 KOG0080 GTPase Rab18, small G 99.0 7.4E-10 1.6E-14 86.9 6.5 111 1-123 17-130 (209)
225 PRK10512 selenocysteinyl-tRNA- 99.0 6.5E-09 1.4E-13 99.8 14.1 109 1-123 6-117 (614)
226 PTZ00258 GTP-binding protein; 99.0 1.5E-09 3.3E-14 98.3 9.0 78 1-85 27-125 (390)
227 PRK12735 elongation factor Tu; 99.0 5.5E-09 1.2E-13 95.6 12.5 108 1-123 18-141 (396)
228 COG1163 DRG Predicted GTPase [ 99.0 5.9E-10 1.3E-14 96.8 5.7 79 1-86 69-151 (365)
229 TIGR02836 spore_IV_A stage IV 99.0 2E-09 4.3E-14 97.0 9.2 112 1-122 23-192 (492)
230 PTZ00132 GTP-binding nuclear p 99.0 3.9E-09 8.5E-14 88.4 10.6 108 1-123 15-126 (215)
231 PRK12739 elongation factor G; 99.0 3.4E-09 7.4E-14 103.4 11.5 108 1-123 14-138 (691)
232 KOG0095 GTPase Rab30, small G 99.0 1.4E-08 3E-13 78.8 12.3 112 1-124 13-126 (213)
233 cd01899 Ygr210 Ygr210 subfamil 99.0 2.3E-09 5E-14 95.1 8.9 79 1-86 4-110 (318)
234 PRK05124 cysN sulfate adenylyl 99.0 1.7E-08 3.7E-13 94.3 14.9 109 1-123 33-173 (474)
235 PRK00007 elongation factor G; 99.0 6.2E-09 1.3E-13 101.6 12.1 108 1-123 16-140 (693)
236 PF10662 PduV-EutP: Ethanolami 98.9 2.6E-09 5.7E-14 83.4 7.3 96 1-123 7-102 (143)
237 PRK05506 bifunctional sulfate 98.9 4.7E-09 1E-13 101.5 10.4 109 1-123 30-170 (632)
238 TIGR00503 prfC peptide chain r 98.9 7E-09 1.5E-13 97.9 11.2 108 1-123 17-145 (527)
239 TIGR00483 EF-1_alpha translati 98.9 9.7E-09 2.1E-13 94.9 11.5 110 1-123 13-154 (426)
240 PRK04004 translation initiatio 98.9 5.9E-09 1.3E-13 99.6 10.1 107 1-123 12-136 (586)
241 KOG0394 Ras-related GTPase [Ge 98.9 4.4E-09 9.6E-14 84.3 7.3 113 1-123 15-131 (210)
242 cd01882 BMS1 Bms1. Bms1 is an 98.9 1.9E-08 4.1E-13 85.2 11.3 100 1-123 45-146 (225)
243 TIGR02034 CysN sulfate adenyly 98.9 1.1E-08 2.5E-13 93.8 10.6 109 1-123 6-146 (406)
244 PF03193 DUF258: Protein of un 98.9 5.8E-10 1.3E-14 89.0 1.8 56 1-59 41-103 (161)
245 PRK13351 elongation factor G; 98.9 9.4E-09 2E-13 100.4 10.3 108 1-123 14-138 (687)
246 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.2E-09 6.9E-14 83.2 5.6 51 1-54 89-139 (141)
247 PRK00741 prfC peptide chain re 98.9 1.2E-08 2.6E-13 96.3 10.2 108 1-123 16-144 (526)
248 TIGR01393 lepA GTP-binding pro 98.9 1.1E-08 2.3E-13 98.1 9.8 108 1-123 9-135 (595)
249 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 2.5E-08 5.4E-13 84.5 10.9 114 1-123 5-124 (232)
250 PRK12740 elongation factor G; 98.8 1.5E-08 3.2E-13 98.8 10.5 108 1-123 1-125 (668)
251 PRK09563 rbgA GTPase YlqF; Rev 98.8 7.4E-09 1.6E-13 90.8 7.6 60 1-63 127-186 (287)
252 PRK12288 GTPase RsgA; Reviewed 98.8 5.2E-09 1.1E-13 93.9 5.9 55 1-58 211-272 (347)
253 PRK12289 GTPase RsgA; Reviewed 98.8 4.2E-09 9E-14 94.6 5.1 55 1-58 178-239 (352)
254 PRK09602 translation-associate 98.8 1.8E-08 3.9E-13 92.0 9.2 79 1-86 7-113 (396)
255 cd01851 GBP Guanylate-binding 98.8 1.6E-07 3.5E-12 79.4 14.0 95 1-102 13-115 (224)
256 TIGR03596 GTPase_YlqF ribosome 98.8 1.2E-08 2.7E-13 88.9 7.4 58 1-61 124-181 (276)
257 COG1162 Predicted GTPases [Gen 98.8 6.1E-09 1.3E-13 90.5 4.7 55 1-58 170-231 (301)
258 PRK05433 GTP-binding protein L 98.8 3.7E-08 8E-13 94.5 9.7 108 1-123 13-139 (600)
259 TIGR00157 ribosome small subun 98.8 9.7E-09 2.1E-13 88.0 5.2 54 1-58 126-186 (245)
260 KOG0088 GTPase Rab21, small G 98.7 1.4E-08 3E-13 79.6 5.0 115 1-127 19-135 (218)
261 KOG0093 GTPase Rab3, small G p 98.7 6.9E-08 1.5E-12 74.8 8.7 111 1-124 27-140 (193)
262 PTZ00416 elongation factor 2; 98.7 1E-07 2.2E-12 94.8 12.3 108 1-123 25-157 (836)
263 PTZ00141 elongation factor 1- 98.7 1E-07 2.2E-12 88.6 11.4 109 1-122 13-157 (446)
264 PF09439 SRPRB: Signal recogni 98.7 2.7E-08 5.9E-13 81.0 6.7 111 1-124 9-126 (181)
265 KOG0073 GTP-binding ADP-ribosy 98.7 8.8E-08 1.9E-12 75.5 8.8 107 1-123 22-130 (185)
266 COG1161 Predicted GTPases [Gen 98.7 2.2E-08 4.9E-13 89.1 5.8 57 1-60 138-194 (322)
267 TIGR03597 GTPase_YqeH ribosome 98.7 3.7E-08 8.1E-13 89.0 6.5 81 1-84 160-246 (360)
268 TIGR00490 aEF-2 translation el 98.7 7.1E-08 1.5E-12 94.6 8.5 108 1-123 25-151 (720)
269 KOG1707 Predicted Ras related/ 98.6 2.1E-07 4.6E-12 86.4 10.4 121 1-132 15-137 (625)
270 TIGR03680 eif2g_arch translati 98.6 2.4E-07 5.1E-12 85.2 10.5 69 42-123 79-147 (406)
271 PRK04000 translation initiatio 98.6 3.1E-07 6.7E-12 84.5 10.9 68 43-123 85-152 (411)
272 KOG0393 Ras-related small GTPa 98.6 4.9E-08 1.1E-12 80.1 4.3 109 1-123 10-122 (198)
273 KOG3883 Ras family small GTPas 98.6 7.4E-07 1.6E-11 69.6 10.4 117 1-127 15-135 (198)
274 KOG3859 Septins (P-loop GTPase 98.6 1E-07 2.2E-12 81.4 6.0 117 1-123 48-189 (406)
275 KOG0091 GTPase Rab39, small G 98.6 1.1E-07 2.3E-12 75.1 5.3 122 1-132 14-138 (213)
276 PRK00098 GTPase RsgA; Reviewed 98.6 1.7E-07 3.6E-12 82.7 7.0 53 1-56 170-229 (298)
277 KOG0075 GTP-binding ADP-ribosy 98.5 1.3E-07 2.9E-12 73.2 5.5 107 1-123 26-135 (186)
278 KOG2486 Predicted GTPase [Gene 98.5 4.7E-07 1E-11 77.4 8.9 114 1-123 142-261 (320)
279 PRK13796 GTPase YqeH; Provisio 98.5 9.4E-08 2E-12 86.6 5.0 53 1-56 166-223 (365)
280 cd01854 YjeQ_engC YjeQ/EngC. 98.5 2.2E-07 4.8E-12 81.5 6.8 54 1-57 167-227 (287)
281 PLN00116 translation elongatio 98.5 7.9E-07 1.7E-11 88.6 11.5 108 1-123 25-163 (843)
282 TIGR01425 SRP54_euk signal rec 98.5 1.4E-06 3E-11 80.0 11.4 71 42-123 182-252 (429)
283 PRK07560 elongation factor EF- 98.5 6.5E-07 1.4E-11 88.1 9.7 108 1-123 26-152 (731)
284 PLN00043 elongation factor 1-a 98.5 3.3E-06 7.1E-11 78.5 13.8 110 1-123 13-158 (447)
285 KOG0086 GTPase Rab4, small G p 98.5 5E-07 1.1E-11 70.5 6.7 115 1-129 15-133 (214)
286 COG2229 Predicted GTPase [Gene 98.5 1.3E-06 2.9E-11 70.3 9.4 108 1-123 16-134 (187)
287 TIGR00092 GTP-binding protein 98.5 7E-07 1.5E-11 80.3 8.6 80 1-86 8-108 (368)
288 KOG0448 Mitofusin 1 GTPase, in 98.5 9.9E-07 2.2E-11 83.4 9.7 68 44-123 207-274 (749)
289 COG0012 Predicted GTPase, prob 98.5 4.2E-07 9E-12 81.0 6.9 79 1-86 8-108 (372)
290 KOG0083 GTPase Rab26/Rab37, sm 98.4 6.6E-08 1.4E-12 73.7 1.3 114 1-126 3-119 (192)
291 COG4917 EutP Ethanolamine util 98.4 4.8E-07 1E-11 68.4 5.4 97 1-123 7-103 (148)
292 KOG1424 Predicted GTP-binding 98.4 5.6E-07 1.2E-11 82.6 5.4 60 1-63 320-379 (562)
293 PRK09435 membrane ATPase/prote 98.4 5.1E-06 1.1E-10 74.1 11.5 60 41-123 147-207 (332)
294 COG5256 TEF1 Translation elong 98.3 3.9E-06 8.4E-11 75.5 10.1 175 1-203 13-225 (428)
295 COG1217 TypA Predicted membran 98.3 6.9E-06 1.5E-10 74.9 11.5 169 5-204 15-198 (603)
296 KOG1486 GTP-binding protein DR 98.3 7.4E-07 1.6E-11 75.2 4.8 99 1-106 68-167 (364)
297 KOG0462 Elongation factor-type 98.3 2.5E-06 5.3E-11 79.0 8.5 104 5-123 70-190 (650)
298 PTZ00099 rab6; Provisional 98.3 9.5E-06 2.1E-10 66.0 10.7 71 42-123 28-98 (176)
299 KOG0097 GTPase Rab14, small G 98.2 2.9E-06 6.3E-11 65.4 6.3 119 1-132 17-138 (215)
300 COG0532 InfB Translation initi 98.2 1.1E-05 2.3E-10 74.8 11.2 104 1-123 11-120 (509)
301 KOG1145 Mitochondrial translat 98.2 3.7E-06 8E-11 77.9 7.9 106 1-122 159-265 (683)
302 PRK13768 GTPase; Provisional 98.2 3.5E-06 7.7E-11 72.5 6.7 80 43-124 97-176 (253)
303 PF00448 SRP54: SRP54-type pro 98.2 4.2E-07 9.2E-12 75.3 0.6 72 41-123 82-153 (196)
304 PRK14845 translation initiatio 98.1 8.5E-06 1.8E-10 82.1 8.8 102 6-123 472-591 (1049)
305 KOG2485 Conserved ATP/GTP bind 98.1 3.8E-06 8.3E-11 73.0 5.5 67 1-67 149-220 (335)
306 KOG1491 Predicted GTP-binding 98.1 4.2E-06 9.2E-11 73.5 5.7 79 1-86 26-125 (391)
307 PTZ00327 eukaryotic translatio 98.1 2.2E-05 4.7E-10 73.1 10.6 68 43-123 117-184 (460)
308 PRK11889 flhF flagellar biosyn 98.1 3E-06 6.6E-11 76.7 4.8 71 42-123 320-390 (436)
309 KOG1954 Endocytosis/signaling 98.1 1.7E-05 3.7E-10 70.5 9.1 73 45-124 149-225 (532)
310 KOG4252 GTP-binding protein [S 98.1 1.1E-06 2.5E-11 70.3 1.4 111 1-124 26-138 (246)
311 KOG0070 GTP-binding ADP-ribosy 98.0 1.4E-05 3.1E-10 64.4 6.6 105 1-122 23-130 (181)
312 PRK14722 flhF flagellar biosyn 98.0 2E-05 4.4E-10 71.3 8.1 79 40-123 213-294 (374)
313 PRK12726 flagellar biosynthesi 98.0 4.8E-05 1E-09 68.7 10.4 71 42-123 285-355 (407)
314 TIGR03348 VI_IcmF type VI secr 98.0 3.7E-05 8.1E-10 79.3 11.0 115 1-123 117-256 (1169)
315 KOG0447 Dynamin-like GTP bindi 98.0 5E-05 1.1E-09 70.6 10.4 74 44-123 413-492 (980)
316 KOG0081 GTPase Rab27, small G 98.0 2.4E-06 5.3E-11 67.2 1.5 112 1-124 15-138 (219)
317 KOG0090 Signal recognition par 98.0 3.8E-05 8.3E-10 63.4 8.2 112 1-125 44-160 (238)
318 KOG0410 Predicted GTP binding 98.0 1.9E-05 4.1E-10 69.1 6.6 120 1-123 184-307 (410)
319 TIGR00064 ftsY signal recognit 97.9 2.1E-05 4.7E-10 68.4 6.6 72 41-123 153-230 (272)
320 PF03029 ATP_bind_1: Conserved 97.9 5.7E-06 1.2E-10 70.6 2.8 76 44-124 92-170 (238)
321 COG1419 FlhF Flagellar GTP-bin 97.9 2.2E-05 4.7E-10 71.0 6.4 72 41-123 280-351 (407)
322 KOG0077 Vesicle coat complex C 97.9 3.9E-05 8.5E-10 60.9 6.5 109 1-123 26-134 (193)
323 COG0480 FusA Translation elong 97.9 5E-05 1.1E-09 73.8 8.5 108 1-123 16-141 (697)
324 PRK14974 cell division protein 97.9 3.8E-05 8.2E-10 68.7 6.9 71 42-123 222-292 (336)
325 PRK10416 signal recognition pa 97.8 0.00016 3.5E-09 64.3 10.5 75 41-123 195-272 (318)
326 PRK14721 flhF flagellar biosyn 97.8 3.8E-05 8.1E-10 70.6 6.6 72 41-123 268-339 (420)
327 COG2895 CysN GTPases - Sulfate 97.8 0.00025 5.5E-09 62.9 10.9 110 2-126 13-155 (431)
328 PRK14723 flhF flagellar biosyn 97.8 4.2E-05 9.1E-10 74.7 6.8 75 41-123 262-336 (767)
329 TIGR00750 lao LAO/AO transport 97.8 0.00012 2.7E-09 64.5 9.2 61 41-123 125-185 (300)
330 KOG1532 GTPase XAB1, interacts 97.8 3.8E-05 8.2E-10 65.9 5.2 73 43-123 116-194 (366)
331 PRK12727 flagellar biosynthesi 97.8 0.00022 4.8E-09 67.0 10.6 71 41-123 427-497 (559)
332 KOG3886 GTP-binding protein [S 97.8 4E-05 8.7E-10 64.1 5.0 118 1-125 10-131 (295)
333 KOG0458 Elongation factor 1 al 97.8 0.00025 5.3E-09 66.4 10.6 179 1-203 183-399 (603)
334 KOG0071 GTP-binding ADP-ribosy 97.7 0.00032 6.9E-09 54.3 8.7 107 1-123 23-131 (180)
335 KOG0074 GTP-binding ADP-ribosy 97.7 0.0002 4.4E-09 55.4 7.3 108 1-123 23-132 (185)
336 PRK05703 flhF flagellar biosyn 97.7 6.1E-05 1.3E-09 69.6 5.1 72 41-123 298-370 (424)
337 PRK12723 flagellar biosynthesi 97.6 0.00044 9.5E-09 63.1 10.4 72 41-123 253-325 (388)
338 PRK12724 flagellar biosynthesi 97.6 3.9E-05 8.5E-10 70.2 3.6 72 41-123 298-372 (432)
339 cd03112 CobW_like The function 97.6 0.00013 2.7E-09 58.3 5.9 18 1-18 6-23 (158)
340 KOG2484 GTPase [General functi 97.6 2.9E-05 6.3E-10 69.6 2.2 57 1-60 258-314 (435)
341 PRK06731 flhF flagellar biosyn 97.6 0.00028 6E-09 61.3 7.9 71 42-123 154-224 (270)
342 PRK01889 GTPase RsgA; Reviewed 97.6 4.5E-05 9.7E-10 68.9 2.9 54 1-57 201-261 (356)
343 PRK00771 signal recognition pa 97.6 9.8E-05 2.1E-09 68.3 4.9 71 42-123 175-245 (437)
344 COG0050 TufB GTPases - transla 97.5 0.00082 1.8E-08 58.4 10.0 128 1-147 18-160 (394)
345 cd03115 SRP The signal recogni 97.5 0.0019 4E-08 52.0 11.7 71 42-123 82-152 (173)
346 PRK10867 signal recognition pa 97.5 0.00079 1.7E-08 62.3 10.5 71 42-123 183-253 (433)
347 COG3276 SelB Selenocysteine-sp 97.5 0.001 2.2E-08 60.7 10.1 109 2-124 7-117 (447)
348 KOG2423 Nucleolar GTPase [Gene 97.4 4.1E-05 8.8E-10 68.7 0.6 54 1-57 313-366 (572)
349 COG1703 ArgK Putative periplas 97.3 0.001 2.2E-08 57.9 7.5 59 41-122 142-201 (323)
350 KOG1487 GTP-binding protein DR 97.3 0.00018 4E-09 61.3 2.6 100 1-107 65-165 (358)
351 PF03308 ArgK: ArgK protein; 97.2 0.00037 7.9E-09 59.7 4.3 59 41-122 120-179 (266)
352 KOG0468 U5 snRNP-specific prot 97.2 0.0029 6.2E-08 60.4 10.3 108 1-123 134-262 (971)
353 TIGR00959 ffh signal recogniti 97.2 0.0028 6.1E-08 58.6 10.1 72 41-123 181-252 (428)
354 COG3523 IcmF Type VI protein s 97.2 0.0013 2.9E-08 67.1 8.3 120 1-124 131-270 (1188)
355 KOG0076 GTP-binding ADP-ribosy 97.2 0.00039 8.4E-09 55.7 3.5 110 1-123 23-139 (197)
356 PRK06995 flhF flagellar biosyn 97.2 0.00053 1.1E-08 64.1 4.8 18 1-18 262-279 (484)
357 COG4108 PrfC Peptide chain rel 97.1 0.0036 7.7E-08 57.2 9.7 74 34-122 72-145 (528)
358 cd03110 Fer4_NifH_child This p 97.1 0.0057 1.2E-07 49.4 9.9 65 41-122 91-155 (179)
359 COG0481 LepA Membrane GTPase L 97.0 0.0027 5.8E-08 58.5 7.5 104 5-123 19-141 (603)
360 COG0194 Gmk Guanylate kinase [ 97.0 0.00035 7.5E-09 56.9 1.6 46 1-49 10-55 (191)
361 cd02038 FleN-like FleN is a me 97.0 0.011 2.4E-07 46.0 10.1 97 2-122 7-109 (139)
362 KOG0096 GTPase Ran/TC4/GSP1 (n 96.9 0.0026 5.7E-08 51.7 6.0 110 1-124 16-128 (216)
363 KOG1144 Translation initiation 96.9 0.002 4.3E-08 62.1 5.9 104 1-122 481-604 (1064)
364 cd03111 CpaE_like This protein 96.8 0.015 3.3E-07 43.0 9.5 93 2-119 7-106 (106)
365 COG5192 BMS1 GTP-binding prote 96.8 0.0038 8.2E-08 58.7 7.1 101 1-123 75-176 (1077)
366 PF06858 NOG1: Nucleolar GTP-b 96.8 0.004 8.7E-08 40.7 5.2 44 75-121 13-58 (58)
367 KOG0780 Signal recognition par 96.7 0.0053 1.1E-07 55.3 6.7 43 41-86 182-224 (483)
368 COG1116 TauB ABC-type nitrate/ 96.6 0.0011 2.5E-08 56.2 2.0 20 1-20 35-54 (248)
369 KOG0461 Selenocysteine-specifi 96.5 0.057 1.2E-06 48.2 12.2 107 1-124 13-136 (522)
370 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.032 6.9E-07 43.7 9.5 19 1-19 32-50 (144)
371 cd02036 MinD Bacterial cell di 96.5 0.036 7.8E-07 44.3 9.9 63 44-122 64-126 (179)
372 COG0552 FtsY Signal recognitio 96.4 0.0062 1.3E-07 53.9 5.6 76 40-123 219-297 (340)
373 PRK14737 gmk guanylate kinase; 96.4 0.0024 5.1E-08 52.4 2.8 46 1-48 10-55 (186)
374 PF13555 AAA_29: P-loop contai 96.4 0.002 4.3E-08 43.0 1.9 16 1-16 29-44 (62)
375 cd03222 ABC_RNaseL_inhibitor T 96.4 0.024 5.3E-07 46.1 8.6 19 1-19 31-49 (177)
376 cd00071 GMPK Guanosine monopho 96.4 0.003 6.6E-08 49.1 3.0 51 1-53 5-56 (137)
377 PRK08472 fliI flagellum-specif 96.4 0.0012 2.7E-08 60.9 0.9 83 1-86 163-256 (434)
378 PF05673 DUF815: Protein of un 96.3 0.014 3E-07 49.8 7.1 89 2-120 59-149 (249)
379 TIGR03263 guanyl_kin guanylate 96.3 0.0019 4E-08 52.2 1.6 50 1-52 7-56 (180)
380 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.042 9.2E-07 38.7 8.6 65 2-87 6-70 (99)
381 cd00066 G-alpha G protein alph 96.3 0.015 3.3E-07 51.8 7.3 81 34-123 152-241 (317)
382 KOG0467 Translation elongation 96.2 0.012 2.7E-07 56.9 6.9 103 5-122 19-136 (887)
383 KOG1707 Predicted Ras related/ 96.2 0.028 6.1E-07 53.1 9.0 107 1-123 431-539 (625)
384 PF00004 AAA: ATPase family as 96.2 0.019 4.1E-07 43.3 6.7 98 1-121 4-111 (132)
385 COG0541 Ffh Signal recognition 96.2 0.01 2.2E-07 54.3 5.9 72 41-123 181-252 (451)
386 cd03230 ABC_DR_subfamily_A Thi 96.1 0.043 9.4E-07 44.1 8.8 19 1-19 32-50 (173)
387 COG1136 SalX ABC-type antimicr 96.1 0.0032 7E-08 53.1 2.0 20 1-20 37-56 (226)
388 KOG0446 Vacuolar sorting prote 96.1 0.0028 6.2E-08 61.5 1.9 73 44-123 133-212 (657)
389 COG3840 ThiQ ABC-type thiamine 96.1 0.0031 6.8E-08 51.4 1.7 19 1-19 31-49 (231)
390 PF02263 GBP: Guanylate-bindin 95.9 0.0076 1.6E-07 52.1 3.6 56 1-56 27-87 (260)
391 PF00005 ABC_tran: ABC transpo 95.9 0.0036 7.8E-08 48.1 1.4 20 1-20 17-36 (137)
392 PRK00300 gmk guanylate kinase; 95.9 0.0052 1.1E-07 50.8 2.3 19 1-19 11-29 (205)
393 PRK14738 gmk guanylate kinase; 95.9 0.0056 1.2E-07 51.0 2.5 18 1-18 19-36 (206)
394 COG1124 DppF ABC-type dipeptid 95.9 0.0089 1.9E-07 50.7 3.6 20 1-20 39-58 (252)
395 smart00275 G_alpha G protein a 95.8 0.039 8.5E-07 49.6 8.0 83 32-123 173-264 (342)
396 COG3839 MalK ABC-type sugar tr 95.8 0.0048 1E-07 55.1 2.0 19 1-19 35-53 (338)
397 PF05879 RHD3: Root hair defec 95.7 0.0077 1.7E-07 59.6 2.9 104 1-107 1-117 (742)
398 cd02042 ParA ParA and ParB of 95.6 0.11 2.4E-06 37.8 8.4 66 2-86 7-72 (104)
399 cd03225 ABC_cobalt_CbiO_domain 95.5 0.0074 1.6E-07 50.1 2.0 19 1-19 33-51 (211)
400 COG4148 ModC ABC-type molybdat 95.5 0.013 2.7E-07 51.0 3.3 18 1-18 30-47 (352)
401 cd03261 ABC_Org_Solvent_Resist 95.5 0.0079 1.7E-07 50.9 2.0 19 1-19 32-50 (235)
402 KOG0072 GTP-binding ADP-ribosy 95.4 0.024 5.1E-07 44.3 4.1 73 39-122 58-131 (182)
403 COG0396 sufC Cysteine desulfur 95.4 0.011 2.3E-07 49.9 2.3 24 1-24 36-59 (251)
404 TIGR01166 cbiO cobalt transpor 95.3 0.0098 2.1E-07 48.6 2.0 19 1-19 24-42 (190)
405 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.0097 2.1E-07 49.7 2.0 19 1-19 36-54 (218)
406 TIGR00960 3a0501s02 Type II (G 95.3 0.0096 2.1E-07 49.7 1.9 19 1-19 35-53 (216)
407 cd03265 ABC_DrrA DrrA is the A 95.3 0.0096 2.1E-07 49.8 1.9 19 1-19 32-50 (220)
408 cd03293 ABC_NrtD_SsuB_transpor 95.3 0.0097 2.1E-07 49.8 1.9 19 1-19 36-54 (220)
409 COG5257 GCD11 Translation init 95.3 0.091 2E-06 46.5 7.8 67 43-123 86-153 (415)
410 TIGR02673 FtsE cell division A 95.3 0.01 2.2E-07 49.4 1.9 19 1-19 34-52 (214)
411 PRK11537 putative GTP-binding 95.3 0.023 5.1E-07 50.6 4.3 17 2-18 11-27 (318)
412 cd03260 ABC_PstB_phosphate_tra 95.3 0.0095 2.1E-07 50.1 1.8 19 1-19 32-50 (227)
413 cd03226 ABC_cobalt_CbiO_domain 95.2 0.01 2.2E-07 49.1 1.9 19 1-19 32-50 (205)
414 cd03264 ABC_drug_resistance_li 95.2 0.01 2.3E-07 49.2 1.9 19 1-19 31-49 (211)
415 cd03238 ABC_UvrA The excision 95.2 0.0099 2.2E-07 48.3 1.7 17 1-17 27-43 (176)
416 cd00009 AAA The AAA+ (ATPases 95.2 0.11 2.3E-06 39.2 7.5 19 1-19 25-43 (151)
417 cd01130 VirB11-like_ATPase Typ 95.2 0.01 2.2E-07 48.5 1.7 19 1-19 31-49 (186)
418 cd03224 ABC_TM1139_LivF_branch 95.2 0.011 2.4E-07 49.4 2.0 19 1-19 32-50 (222)
419 COG4525 TauB ABC-type taurine 95.2 0.011 2.4E-07 48.8 1.8 18 1-18 37-54 (259)
420 KOG0465 Mitochondrial elongati 95.1 0.028 6.1E-07 53.4 4.6 104 5-123 49-169 (721)
421 TIGR02315 ABC_phnC phosphonate 95.1 0.012 2.5E-07 50.0 2.0 19 1-19 34-52 (243)
422 cd03259 ABC_Carb_Solutes_like 95.1 0.012 2.6E-07 48.9 2.0 19 1-19 32-50 (213)
423 cd01857 HSR1_MMR1 HSR1/MMR1. 95.1 0.055 1.2E-06 42.0 5.6 46 74-123 10-55 (141)
424 cd03269 ABC_putative_ATPase Th 95.1 0.012 2.7E-07 48.7 2.0 19 1-19 32-50 (210)
425 cd03263 ABC_subfamily_A The AB 95.1 0.012 2.7E-07 49.1 2.0 19 1-19 34-52 (220)
426 cd03262 ABC_HisP_GlnQ_permease 95.1 0.012 2.7E-07 48.8 2.0 19 1-19 32-50 (213)
427 TIGR03608 L_ocin_972_ABC putat 95.1 0.013 2.7E-07 48.5 2.0 19 1-19 30-48 (206)
428 cd00820 PEPCK_HprK Phosphoenol 95.1 0.012 2.6E-07 43.8 1.6 16 1-16 21-36 (107)
429 cd03292 ABC_FtsE_transporter F 95.1 0.012 2.7E-07 48.8 1.9 19 1-19 33-51 (214)
430 cd03258 ABC_MetN_methionine_tr 95.1 0.012 2.7E-07 49.6 1.9 19 1-19 37-55 (233)
431 PRK10078 ribose 1,5-bisphospho 95.1 0.012 2.7E-07 47.9 1.9 18 1-18 8-25 (186)
432 COG2884 FtsE Predicted ATPase 95.1 0.014 3E-07 48.0 2.0 20 1-20 34-53 (223)
433 cd03216 ABC_Carb_Monos_I This 95.0 0.013 2.9E-07 46.8 1.9 19 1-19 32-50 (163)
434 TIGR02211 LolD_lipo_ex lipopro 95.0 0.013 2.9E-07 48.9 2.0 19 1-19 37-55 (221)
435 PRK15177 Vi polysaccharide exp 95.0 0.013 2.9E-07 48.9 2.0 19 1-19 19-37 (213)
436 cd03256 ABC_PhnC_transporter A 95.0 0.013 2.8E-07 49.7 1.9 19 1-19 33-51 (241)
437 cd03268 ABC_BcrA_bacitracin_re 95.0 0.013 2.9E-07 48.4 2.0 19 1-19 32-50 (208)
438 cd03235 ABC_Metallic_Cations A 95.0 0.013 2.8E-07 48.7 1.9 19 1-19 31-49 (213)
439 cd03229 ABC_Class3 This class 95.0 0.013 2.9E-07 47.3 1.9 19 1-19 32-50 (178)
440 KOG2749 mRNA cleavage and poly 95.0 0.11 2.5E-06 46.4 7.8 61 46-122 215-275 (415)
441 KOG1673 Ras GTPases [General f 95.0 0.06 1.3E-06 42.6 5.4 110 1-123 26-137 (205)
442 PRK11629 lolD lipoprotein tran 95.0 0.014 3E-07 49.4 2.0 19 1-19 41-59 (233)
443 PRK13900 type IV secretion sys 95.0 0.055 1.2E-06 48.5 5.9 18 1-18 166-183 (332)
444 cd03218 ABC_YhbG The ABC trans 95.0 0.014 3.1E-07 49.1 2.0 19 1-19 32-50 (232)
445 PHA02518 ParA-like protein; Pr 94.9 0.13 2.9E-06 42.2 7.8 67 42-121 76-144 (211)
446 cd03266 ABC_NatA_sodium_export 94.9 0.015 3.2E-07 48.5 2.0 19 1-19 37-55 (218)
447 PRK11248 tauB taurine transpor 94.9 0.014 3.1E-07 50.1 1.9 19 1-19 33-51 (255)
448 smart00010 small_GTPase Small 94.9 0.094 2E-06 38.9 6.2 18 1-18 6-23 (124)
449 cd03301 ABC_MalK_N The N-termi 94.9 0.015 3.3E-07 48.3 1.9 19 1-19 32-50 (213)
450 KOG0054 Multidrug resistance-a 94.9 0.028 6.1E-07 58.6 4.2 19 1-19 553-571 (1381)
451 cd03219 ABC_Mj1267_LivG_branch 94.9 0.015 3.3E-07 49.1 1.9 19 1-19 32-50 (236)
452 COG4988 CydD ABC-type transpor 94.9 0.016 3.4E-07 54.8 2.2 20 1-20 353-372 (559)
453 PRK14242 phosphate transporter 94.9 0.015 3.2E-07 49.8 1.8 18 1-18 38-55 (253)
454 PRK13539 cytochrome c biogenes 94.8 0.016 3.5E-07 48.1 2.0 19 1-19 34-52 (207)
455 cd03257 ABC_NikE_OppD_transpor 94.8 0.016 3.5E-07 48.6 2.0 19 1-19 37-55 (228)
456 TIGR01978 sufC FeS assembly AT 94.8 0.015 3.3E-07 49.2 1.9 18 1-18 32-49 (243)
457 cd03254 ABCC_Glucan_exporter_l 94.8 0.016 3.5E-07 48.7 2.0 19 1-19 35-53 (229)
458 TIGR01189 ccmA heme ABC export 94.8 0.016 3.5E-07 47.6 1.9 19 1-19 32-50 (198)
459 cd03296 ABC_CysA_sulfate_impor 94.8 0.016 3.5E-07 49.1 2.0 19 1-19 34-52 (239)
460 cd03215 ABC_Carb_Monos_II This 94.8 0.017 3.6E-07 46.9 2.0 20 1-20 32-51 (182)
461 cd03236 ABC_RNaseL_inhibitor_d 94.8 0.017 3.7E-07 49.8 2.0 20 1-20 32-51 (255)
462 PF13207 AAA_17: AAA domain; P 94.8 0.015 3.3E-07 43.5 1.6 18 1-18 5-22 (121)
463 PRK10584 putative ABC transpor 94.8 0.017 3.7E-07 48.6 2.0 19 1-19 42-60 (228)
464 TIGR03864 PQQ_ABC_ATP ABC tran 94.8 0.017 3.6E-07 48.9 1.9 19 1-19 33-51 (236)
465 TIGR02770 nickel_nikD nickel i 94.8 0.017 3.6E-07 48.8 1.9 19 1-19 18-36 (230)
466 PRK14247 phosphate ABC transpo 94.8 0.016 3.5E-07 49.4 1.8 19 1-19 35-53 (250)
467 PRK11264 putative amino-acid A 94.8 0.017 3.6E-07 49.3 1.9 19 1-19 35-53 (250)
468 cd03297 ABC_ModC_molybdenum_tr 94.8 0.017 3.7E-07 48.1 1.9 19 1-19 29-47 (214)
469 PRK11124 artP arginine transpo 94.7 0.018 3.8E-07 49.0 2.0 19 1-19 34-52 (242)
470 TIGR01184 ntrCD nitrate transp 94.7 0.018 3.9E-07 48.7 2.0 19 1-19 17-35 (230)
471 cd03294 ABC_Pro_Gly_Bertaine T 94.7 0.018 3.8E-07 50.0 2.0 19 1-19 56-74 (269)
472 TIGR03410 urea_trans_UrtE urea 94.7 0.018 3.9E-07 48.5 2.0 19 1-19 32-50 (230)
473 PRK14273 phosphate ABC transpo 94.7 0.017 3.7E-07 49.4 1.9 19 1-19 39-57 (254)
474 cd03214 ABC_Iron-Siderophores_ 94.7 0.018 3.9E-07 46.7 1.9 19 1-19 31-49 (180)
475 PRK10908 cell division protein 94.7 0.018 3.9E-07 48.3 1.9 19 1-19 34-52 (222)
476 PRK13541 cytochrome c biogenes 94.7 0.018 4E-07 47.2 2.0 19 1-19 32-50 (195)
477 PRK11545 gntK gluconate kinase 94.7 0.017 3.8E-07 46.2 1.8 18 1-18 1-18 (163)
478 COG1120 FepC ABC-type cobalami 94.7 0.018 3.9E-07 49.6 1.9 18 1-18 34-51 (258)
479 TIGR02322 phosphon_PhnN phosph 94.7 0.017 3.6E-07 46.7 1.7 18 1-18 7-24 (179)
480 PRK13540 cytochrome c biogenes 94.7 0.019 4E-07 47.4 2.0 19 1-19 33-51 (200)
481 cd03369 ABCC_NFT1 Domain 2 of 94.7 0.018 4E-07 47.6 1.9 19 1-19 40-58 (207)
482 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.017 3.7E-07 48.9 1.8 19 1-19 35-53 (238)
483 cd03223 ABCD_peroxisomal_ALDP 94.7 0.02 4.2E-07 45.9 2.0 19 1-19 33-51 (166)
484 COG1117 PstB ABC-type phosphat 94.6 0.018 3.9E-07 48.2 1.7 16 1-16 39-54 (253)
485 cd03231 ABC_CcmA_heme_exporter 94.6 0.019 4.1E-07 47.4 1.9 19 1-19 32-50 (201)
486 cd03245 ABCC_bacteriocin_expor 94.6 0.019 4.1E-07 47.9 2.0 19 1-19 36-54 (220)
487 PRK14239 phosphate transporter 94.6 0.019 4.1E-07 49.0 2.0 18 1-18 37-54 (252)
488 PRK14267 phosphate ABC transpo 94.6 0.019 4.1E-07 49.1 1.9 19 1-19 36-54 (253)
489 PRK13695 putative NTPase; Prov 94.6 0.1 2.2E-06 41.9 6.2 18 1-18 6-23 (174)
490 TIGR01277 thiQ thiamine ABC tr 94.6 0.02 4.2E-07 47.7 2.0 19 1-19 30-48 (213)
491 PRK13638 cbiO cobalt transport 94.6 0.019 4.1E-07 49.7 2.0 19 1-19 33-51 (271)
492 COG1131 CcmA ABC-type multidru 94.6 0.019 4.2E-07 50.5 2.0 20 1-20 37-56 (293)
493 PRK14269 phosphate ABC transpo 94.6 0.019 4E-07 49.0 1.9 18 1-18 34-51 (246)
494 KOG4181 Uncharacterized conser 94.6 0.3 6.6E-06 43.7 9.3 19 1-19 194-212 (491)
495 PRK13543 cytochrome c biogenes 94.6 0.02 4.2E-07 47.8 1.9 19 1-19 43-61 (214)
496 PRK14241 phosphate transporter 94.6 0.019 4E-07 49.4 1.8 19 1-19 36-54 (258)
497 PRK13645 cbiO cobalt transport 94.6 0.019 4.1E-07 50.3 1.9 19 1-19 43-61 (289)
498 PRK14262 phosphate ABC transpo 94.6 0.019 4.1E-07 49.0 1.9 18 1-18 35-52 (250)
499 PRK10744 pstB phosphate transp 94.6 0.019 4.1E-07 49.4 1.8 19 1-19 45-63 (260)
500 cd01858 NGP_1 NGP-1. Autoanti 94.6 0.064 1.4E-06 42.3 4.8 46 74-123 7-52 (157)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=6.3e-60 Score=409.58 Aligned_cols=256 Identities=66% Similarity=1.086 Sum_probs=238.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|++|+||||++|+|+|+.++.++.+.+++..+.......+|+.++||||||+.+....++++.+.++.++...++|+||
T Consensus 44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVL 123 (313)
T TIGR00991 44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLL 123 (313)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEE
Confidence 69999999999999999998888887777666666666789999999999999998766777777777777777999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA 160 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (256)
||.++|..|+++.|.++++.|++.||+++|+++|||+||+|..++++.++++|+.++++.++++|+++++..+..++...
T Consensus 124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~ 203 (313)
T TIGR00991 124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFP 203 (313)
T ss_pred EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhccccccccccc
Confidence 99999988899999999999999999999999999999999988899999999999999999999999888777777788
Q ss_pred chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhccCCCCCCCCcchhhHHHHHHHHH-HH
Q 025189 161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLI-LK 239 (256)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ 239 (256)
+|+.++||++.|.+|+.+|++||+++.|++.|++++++.+.+.++++++|++++++++||.++|+||||++++|||| +|
T Consensus 204 ~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (313)
T TIGR00991 204 IPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK 283 (313)
T ss_pred CCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred HHHHHHHHhhhhcCCCC
Q 025189 240 WIEGAIKSDIAKDKKPY 256 (256)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (256)
||+++|++||+++++|.
T Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (313)
T TIGR00991 284 PIRRAIHADIANEKKDA 300 (313)
T ss_pred HHHHHHHHHHhhccCcc
Confidence 99999999999999873
No 2
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=2.6e-46 Score=347.10 Aligned_cols=245 Identities=31% Similarity=0.503 Sum_probs=216.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d 77 (256)
+|+||+|||||+|+|+|+.++.++...+.|..+.......+|..+.||||||+.++... ..++++.+..++...++|
T Consensus 124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpD 203 (763)
T TIGR00993 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPD 203 (763)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999988877776555666666666778999999999999987532 245666777777767899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC-----CchhHhhhhccHHHHHHHHHhcccC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLG 152 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~~~~ 152 (256)
+||||++++..+.+.++..+++.|++.||+++|+++|||+|++|..++++ .++++|+.++.+.++++|++|++..
T Consensus 204 VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~ 283 (763)
T TIGR00993 204 IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDL 283 (763)
T ss_pred EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcc
Confidence 99999999865666688899999999999999999999999999987765 6899999999999999999998755
Q ss_pred ccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHH-HhhhCCCCccccchhhccCCCCCCCCcchhhHHH
Q 025189 153 KHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGIT-DVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVI 231 (256)
Q Consensus 153 ~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 231 (256)
....+..++|+.++||++.|.+|+.+|++||++..|++.|+..|. ..+.+++.+++.+++++++++++.++++|+||++
T Consensus 284 ~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~ 363 (763)
T TIGR00993 284 RLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPY 363 (763)
T ss_pred eecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHH
Confidence 545556789999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHH
Q 025189 232 GLQWLI-LKWIEGAI 245 (256)
Q Consensus 232 ~~~~~~-~~~~~~~~ 245 (256)
++|||| +|++-+.=
T Consensus 364 ~ls~ll~~r~~~k~~ 378 (763)
T TIGR00993 364 LLSWLLQSRAHPKLP 378 (763)
T ss_pred HHHHHhhcCCCCCCh
Confidence 999999 89865543
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=1.6e-37 Score=265.65 Aligned_cols=209 Identities=46% Similarity=0.702 Sum_probs=175.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---CcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---~~~~~~~~i~~~l~~~~~d 77 (256)
+|++|||||||+|+|+|...+.++.+.++|..+..+....+|..+++|||||+++... .++.+++.+++++...++|
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id 116 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD 116 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC
Confidence 6999999999999999999888888888888888888888999999999999998732 3456777777787777899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHH-HHHHHHHhcccCcccc
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDA-LLKTIRLGAGLGKHEF 156 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~~~~ 156 (256)
++|||.++|..|++..|..+++.|.+.||.++|+++++|+||+|..++++.....+..++... ...++.++.++.+ ..
T Consensus 117 vIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 195 (249)
T cd01853 117 VVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GD 195 (249)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cC
Confidence 999999999888999999999999999999999999999999999888877655555444433 3444445544443 23
Q ss_pred ccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccc
Q 025189 157 EDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVD 210 (256)
Q Consensus 157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~ 210 (256)
....+|+.+++|++.|.+|+.+|++||+++.|++.|+..|.........+++++
T Consensus 196 ~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~~~ 249 (249)
T cd01853 196 PRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANILLD 249 (249)
T ss_pred ccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhccccccccC
Confidence 346799999999999999999999999999999999999999988877666653
No 4
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.97 E-value=5.3e-30 Score=215.00 Aligned_cols=176 Identities=29% Similarity=0.402 Sum_probs=137.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (256)
+|+||+||||++|+|+|...+..+. ..++|..+..+...++|+.++||||||+.|+...++++.+.|.+|+ +.+++|
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~h 85 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPH 85 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ES
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCe
Confidence 6999999999999999999877663 4577888999889999999999999999999888888888898876 568999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhcc-HHHHHHHHHhcc-c---C
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS-DALLKTIRLGAG-L---G 152 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~-~---~ 152 (256)
+||||++++ |++..+...++.+.+.||+++|++++||+|++|.... ..+++|+++.. ..+++++++|++ | +
T Consensus 86 a~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~~f~ 161 (212)
T PF04548_consen 86 AFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYHVFN 161 (212)
T ss_dssp EEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred EEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence 999998888 9999999999999999999999999999999987533 34899998544 679999998863 3 2
Q ss_pred cc-------cccc----CCchHHHHhcCCCCCCCCcCcc
Q 025189 153 KH-------EFED----YAVPVALVENSGRCSKNENDEK 180 (256)
Q Consensus 153 ~~-------~~~~----~~ip~~~~~n~~~~~~~~~~~~ 180 (256)
+. ..|. .+|+.++.+|++.||+++.+++
T Consensus 162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~ 200 (212)
T PF04548_consen 162 NKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEE 200 (212)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Confidence 22 0111 5799999999999998876554
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=1e-26 Score=192.71 Aligned_cols=146 Identities=24% Similarity=0.335 Sum_probs=123.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (256)
+|+||+|||||+|+|+|+..+..+. ..++|..+..+...++|+.++||||||+++.........+.+.+++ +.+++|
T Consensus 6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~ 85 (196)
T cd01852 6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH 85 (196)
T ss_pred ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE
Confidence 6999999999999999998765553 3467888888888889999999999999997655555566666654 357999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcc
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 150 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 150 (256)
+||||++++ +++..+..+++.+++.||+++|+++++|+|++|.. .+.++++|++.....+++++++|+.
T Consensus 86 ~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l--~~~~~~~~~~~~~~~l~~l~~~c~~ 154 (196)
T cd01852 86 AFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL--EGGTLEDYLENSCEALKRLLEKCGG 154 (196)
T ss_pred EEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc--CCCcHHHHHHhccHHHHHHHHHhCC
Confidence 999998877 58999999999999999999999999999999975 3348899998878899999999863
No 6
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=175.48 Aligned_cols=182 Identities=24% Similarity=0.326 Sum_probs=137.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|+||+|||||||+||+.+..+++..+.++....+....+++..+++|||||++|+...+.++.+.++..+ ++.|++|
T Consensus 45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL 122 (296)
T COG3596 45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVL 122 (296)
T ss_pred ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEE
Confidence 69999999999999998877777777777776666667788899999999999999888888888888877 7899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHH--hc--ccCcccc
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRL--GA--GLGKHEF 156 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~--~~--~~~~~~~ 156 (256)
++++.++ |.-..|.+++..+.-.... +++++++|++|...+ +.+|+.-...++..++++++. |. ++...
T Consensus 123 ~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p-~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-- 195 (296)
T COG3596 123 WLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP-GREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-- 195 (296)
T ss_pred EeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHHhh--
Confidence 9999988 5445566666665544333 799999999998643 345555555567788888853 21 22111
Q ss_pred ccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCccccc
Q 025189 157 EDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVVD 210 (256)
Q Consensus 157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~~ 210 (256)
.-|+ |+.. ...+| +..|...+++.+|.++|..++.
T Consensus 196 ---V~pV--------~~~~--------~r~~wgl~~l~~ali~~lp~e~rs~~a~ 231 (296)
T COG3596 196 ---VKPV--------VAVS--------GRLPWGLKELVRALITALPVEARSPLAA 231 (296)
T ss_pred ---cCCe--------EEec--------cccCccHHHHHHHHHHhCcccccchhhh
Confidence 1222 3322 12459 9999999999999999998876
No 7
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.83 E-value=2.4e-22 Score=179.19 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=123.6
Q ss_pred CCCCCCCHHHHHHHHhC-----CCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIG-----ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g-----~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|+||||+||+|.| +..|.++..+.++....+.+..+.+ +++||.||.+.+.+..++|++.+.- ..
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pn--v~lWDlPG~gt~~f~~~~Yl~~~~~----~~ 114 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPN--VTLWDLPGIGTPNFPPEEYLKEVKF----YR 114 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TT--EEEEEE--GGGSS--HHHHHHHTTG----GG
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCC--CeEEeCCCCCCCCCCHHHHHHHccc----cc
Confidence 49999999999999988 2345555544444333334444554 6999999999998888899987752 48
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC--CCCCCCchhHhhhhccHHHHHHHHHhcccCc
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL--CPPDGLNYDVYCSKRSDALLKTIRLGAGLGK 153 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 153 (256)
+|+||++ .+.|+++.+..+++.++++- +++++|.||+|. ...+......|.+ .+.++++.+.|.....
T Consensus 115 yD~fiii---~s~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 115 YDFFIII---SSERFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQEIRENCLENLQ 184 (376)
T ss_dssp -SEEEEE---ESSS--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-STT--H--HTHHHHHHHHHHHHHH
T ss_pred cCEEEEE---eCCCCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCcccCH--HHHHHHHHHHHHHHHH
Confidence 9999988 34599999999999999884 899999999974 2111111122222 3345555555543211
Q ss_pred cccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCccccc------hhhccCCCCCCCCcch
Q 025189 154 HEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVVD------KKLIDGSGSDDKGKMW 226 (256)
Q Consensus 154 ~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 226 (256)
.......+++++++... ..| |+.|.+++...+|.++|+.++. +++|+.++.+.++++|
T Consensus 185 -k~gv~~P~VFLVS~~dl--------------~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw 249 (376)
T PF05049_consen 185 -KAGVSEPQVFLVSSFDL--------------SKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIW 249 (376)
T ss_dssp -CTT-SS--EEEB-TTTT--------------TSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHH
T ss_pred -HcCCCcCceEEEeCCCc--------------ccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 11123467777766532 238 9999999999999999999987 6788888889999998
Q ss_pred h
Q 025189 227 I 227 (256)
Q Consensus 227 ~ 227 (256)
.
T Consensus 250 ~ 250 (376)
T PF05049_consen 250 L 250 (376)
T ss_dssp H
T ss_pred H
Confidence 7
No 8
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=1.1e-18 Score=144.76 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=107.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC----CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|+|||||+|+|+|......+.. ..+|.....+.. -....+++|||||+++.....+++++.+. ..++
T Consensus 7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~----~~~~ 81 (197)
T cd04104 7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMK----FSEY 81 (197)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhC----ccCc
Confidence 69999999999999999643221111 112222222211 12347899999999987655555654432 2578
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCcccc
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEF 156 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 156 (256)
|++|+| .+ .+++..+..+++.+.+. + +++++|+||+|...+....-..-...+++.++++.+.+..... ..
T Consensus 82 d~~l~v--~~-~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~ 152 (197)
T cd04104 82 DFFIII--SS-TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ-EA 152 (197)
T ss_pred CEEEEE--eC-CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH-Hc
Confidence 999998 33 37899999999988886 3 7899999999985322110000000012233333333322111 00
Q ss_pred ccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCcccc
Q 025189 157 EDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVV 209 (256)
Q Consensus 157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~ 209 (256)
.....+++++++.. ...| ++.|.++++..+|+++|+.+.
T Consensus 153 ~~~~p~v~~vS~~~--------------~~~~~~~~l~~~~~~~l~~~~~~~~~ 192 (197)
T cd04104 153 GVSEPPVFLVSNFD--------------PSDYDFPKLRETLLKDLPAHKRHVFL 192 (197)
T ss_pred CCCCCCEEEEeCCC--------------hhhcChHHHHHHHHHHhhHHHHHHHH
Confidence 11123444444321 1338 999999999999999887654
No 9
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.77 E-value=7.6e-18 Score=127.72 Aligned_cols=110 Identities=19% Similarity=0.386 Sum_probs=85.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH--HHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ--ALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~--~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|+|++.+.+.++..+++|..+......+++..+.++||||+.+....... ....+.+.+ ..+|+
T Consensus 5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~ 82 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSDL 82 (116)
T ss_dssp EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTESE
T ss_pred ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCCE
Confidence 59999999999999999877788888888888877777889999999999999886544331 222222222 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
++||++.+. ..++.+.++++.|+ . .+|+++|+||
T Consensus 83 ii~vv~~~~-~~~~~~~~~~~~l~-~-----~~~~i~v~NK 116 (116)
T PF01926_consen 83 IIYVVDASN-PITEDDKNILRELK-N-----KKPIILVLNK 116 (116)
T ss_dssp EEEEEETTS-HSHHHHHHHHHHHH-T-----TSEEEEEEES
T ss_pred EEEEEECCC-CCCHHHHHHHHHHh-c-----CCCEEEEEcC
Confidence 999988664 45566778888784 1 2899999997
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=8e-18 Score=144.16 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=96.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~v 79 (256)
+|+++||||||+|+|+|++++.+|+.+.||+.........+..++.++||||+..+...-.+++ +.....+ .++|++
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDli 89 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLI 89 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEE
Confidence 6999999999999999999999999999999998888888899999999999998754333322 2222223 699999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
|||++.+. .++..|..+++.+++.. .|+++++||.|...+
T Consensus 90 lfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~ 129 (298)
T COG1159 90 LFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKP 129 (298)
T ss_pred EEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCc
Confidence 99977764 38889999999988832 799999999998643
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=149.15 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=93.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHh--hhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF--LLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~--l~~~~~d~ 78 (256)
+|+++||||||+|+|+|+..+.|++++++|++..+...++.++.+.+|||+|+.+.+. +...+.++.- ....++|+
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai~eADv 86 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAIEEADV 86 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999999999999999999999999999999999999999986441 1222222211 12368999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|||++... -+++.|..+.+.|.+. ++|+++|+||+|..
T Consensus 87 ilfvVD~~~-Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~ 125 (444)
T COG1160 87 ILFVVDGRE-GITPADEEIAKILRRS-----KKPVILVVNKIDNL 125 (444)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEcccCc
Confidence 999954432 3899999999998854 38999999999974
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.73 E-value=3e-17 Score=130.46 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=85.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.++||||||+|+|+|.. +.+++++++|.+.......+++..+.++||||+++......+- +..++++....+|+++
T Consensus 6 vG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee-~v~~~~l~~~~~D~ii 83 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEE-RVARDYLLSEKPDLII 83 (156)
T ss_dssp EESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHH-HHHHHHHHHTSSSEEE
T ss_pred ECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHH-HHHHHHHhhcCCCEEE
Confidence 5999999999999999998 5789999999999888889999999999999998864332211 1223445557899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
+|+ |+.++ +.+..+..++.+.- .|+++|+||+|....++
T Consensus 84 ~Vv--Da~~l-~r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 84 VVV--DATNL-ERNLYLTLQLLELG-----IPVVVVLNKMDEAERKG 122 (156)
T ss_dssp EEE--EGGGH-HHHHHHHHHHHHTT-----SSEEEEEETHHHHHHTT
T ss_pred EEC--CCCCH-HHHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcC
Confidence 994 44344 34455666666653 89999999999864443
No 13
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.3e-16 Score=124.57 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=83.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++ .++|++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i 80 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEADVI 80 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999987666666677777777777778889999999999986533 1112222222222 579999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++... ..+..+..+.+.+.+.. .|+++|+||+|+.
T Consensus 81 i~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~ 118 (157)
T cd01894 81 LFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI 118 (157)
T ss_pred EEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence 99977654 34455556666665432 8999999999985
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=6.8e-16 Score=139.43 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~~~~d~v 79 (256)
+|++|||||||+|+|++++.+.|++.++||++.......++|.++.++||.|+.++...-+ .-.+.-++ ....+|++
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~--~i~~ADlv 300 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK--AIEEADLV 300 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH--HHHhCCEE
Confidence 6999999999999999999999999999999999999999999999999999997643222 11111111 22589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
|||++.+. ..++.+..+++.+ ..+ +++++|+||+|+..
T Consensus 301 L~v~D~~~-~~~~~d~~~~~~~----~~~--~~~i~v~NK~DL~~ 338 (454)
T COG0486 301 LFVLDASQ-PLDKEDLALIELL----PKK--KPIIVVLNKADLVS 338 (454)
T ss_pred EEEEeCCC-CCchhhHHHHHhc----ccC--CCEEEEEechhccc
Confidence 99965553 2567777777622 222 79999999999964
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=1.1e-15 Score=132.73 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=81.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|++.+.++..+++|..........++.++.+|||||+.+...... ...+.....+ .++|++
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvv 83 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLI 83 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence 6999999999999999998878888888888766555555677899999999986532211 1222222223 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.+.. ...+..+++.+... ..|+++|+||+|+.
T Consensus 84 l~VvD~~~~--~~~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 84 LFVVDSDQW--NGDGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred EEEEECCCC--CchHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 999777642 22234555555442 27999999999985
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=3.7e-16 Score=140.82 Aligned_cols=126 Identities=21% Similarity=0.319 Sum_probs=98.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (256)
+|++++|||||+|+|+|++...+++.+++|++......+++|+.+.++||.|+..-....+ +.++.++..-....+|+
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~v 263 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADV 263 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCE
Confidence 6999999999999999999999999999999999999999999999999999987543322 22222222223358999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 132 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~ 132 (256)
+++|++... .++++|.+++..+.+.. +.+++|+||||+.+.+....++
T Consensus 264 vllviDa~~-~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~ 311 (444)
T COG1160 264 VLLVIDATE-GISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEE 311 (444)
T ss_pred EEEEEECCC-CchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHH
Confidence 999955543 38999999999888774 8999999999986443333333
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=99.65 E-value=2.2e-15 Score=132.25 Aligned_cols=115 Identities=20% Similarity=0.318 Sum_probs=83.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|+.++.++..+.+|..........++.++.++||||+.+....-.+ ........+ ..+|++
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~--~~~D~i 88 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL--KDVDLV 88 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH--hcCCEE
Confidence 69999999999999999998877877766665554444446689999999999875422111 122222222 689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++++. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 89 l~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 89 LFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred EEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 99988775 4677777777766632 27999999999985
No 18
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.64 E-value=4.5e-15 Score=117.43 Aligned_cols=113 Identities=17% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.|.. +.++..+++|........++++..+.+|||||+.+......+. .....++...++|+++
T Consensus 2 ~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi 79 (158)
T cd01879 2 VGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEEE
Confidence 6999999999999999986 4566667777777666777888899999999998754322110 1112233235899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.+. . +....++..+.+. -+++++|+||+|+.
T Consensus 80 ~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~ 114 (158)
T cd01879 80 NVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEA 114 (158)
T ss_pred EEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhc
Confidence 9976653 2 2333444444432 27999999999985
No 19
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.63 E-value=7.5e-15 Score=115.67 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=81.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+||||++|++++...+.++..+++|..........++..+++|||||+.+..... .........++ ..+|++
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~ 84 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI--EEADLV 84 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence 699999999999999998766666667777776666667788899999999998764321 11111222222 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++|++++. +.+..+..++.. .. .+|+++|+||+|+.+
T Consensus 85 v~v~d~~~-~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~ 121 (157)
T cd04164 85 LFVIDASR-GLDEEDLEILEL---PA----DKPIIVVLNKSDLLP 121 (157)
T ss_pred EEEEECCC-CCCHHHHHHHHh---hc----CCCEEEEEEchhcCC
Confidence 99988875 445555554443 21 279999999999853
No 20
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.63 E-value=1.4e-15 Score=122.56 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~ 75 (256)
+|++|||||||+|+|.+... .++..+.+|..+......++ +.++.+|||||+.+.... ...+...+ .+
T Consensus 2 iG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~~ 74 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------RR 74 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------hc
Confidence 69999999999999999875 45666667777766666777 899999999998653221 11223233 47
Q ss_pred CcEEEEEEeCCCCC-----CCH-HHHHHHHHHHhhcCC-----cccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYR-----VDD-LDRQIIKAVTGTFGK-----QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r-----~~~-~~~~~~~~l~~~~g~-----~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|++.++.. ... ....+...+...... ...+|+++|+||+|+.
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 99999997776531 111 222233334332211 1238999999999985
No 21
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.6e-15 Score=121.52 Aligned_cols=114 Identities=23% Similarity=0.298 Sum_probs=85.6
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcC-C
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNK-T 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~-~ 75 (256)
+|+|+|||||+||+|+|+. .|.+|..++.|+....+.. ++. +.+||.||+|-...+. +.+-..+.+++..+ .
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~ 106 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN 106 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence 5999999999999999965 6899999998887765543 332 6899999999754333 23445555666432 4
Q ss_pred CcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 76 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 76 ~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
..+++++ +|..+ ..+.|.++++.+.+.- .++++|+||+|..+
T Consensus 107 L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~ 149 (200)
T COG0218 107 LKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLK 149 (200)
T ss_pred heEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCC
Confidence 6666666 45544 6777999999998874 89999999999863
No 22
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=7.9e-15 Score=127.70 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=77.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--------CCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS--------FQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~--------~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~ 69 (256)
+|.+|+|||||+|+|++......+. ...++ ..........+| .+++||||||+++... +....+.|.+
T Consensus 10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~~~~i~~ 88 (276)
T cd01850 10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDCWKPIVD 88 (276)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhhHHHHHH
Confidence 6999999999999999987654432 11111 122233344566 4689999999998632 1111111111
Q ss_pred --------------------hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 70 --------------------FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 70 --------------------~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+.+.++|++||+++.....+...|.++++.+.+. .++++|+||+|+.
T Consensus 89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 11234689999997766545788888888888652 7999999999985
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=3.4e-15 Score=119.82 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~ 75 (256)
||.+|||||||+|+|.+... .++..+.+|..+......+++. .+.+|||||+.+.... ...+++.+ ..
T Consensus 6 vG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~------~~ 78 (170)
T cd01898 6 VGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI------ER 78 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH------Hh
Confidence 69999999999999998764 4555555566665555566665 8999999998653221 22233333 37
Q ss_pred CcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|+++++. ...+....+.+.+.+.......+|+++|+||+|+.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 8999999777653 12233345556665543221237899999999985
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=6.9e-15 Score=135.61 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=90.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+...... .+.+......++ ..+|++
T Consensus 5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ad~v 82 (429)
T TIGR03594 5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EEADVI 82 (429)
T ss_pred ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hhCCEE
Confidence 69999999999999999987778888888888888888899999999999998643211 122222222223 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++|++... .++..+..+.+.+.+. .+|+++|+||+|+..
T Consensus 83 l~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 83 LFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred EEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 99977654 4778888888888764 289999999999853
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.62 E-value=9.5e-15 Score=119.08 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=79.3
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhc-CC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLN-KT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~-~~ 75 (256)
+|.+|+|||||+|+|++.. ...++...++|..+..+.. + ..+.+|||||++...... ..+...+..++.. ..
T Consensus 24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (179)
T TIGR03598 24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN 100 (179)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence 6999999999999999975 4455555566665554432 2 368999999997654322 2233333444432 35
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|++.+. +++..+..+++.+... .+|+++|+||+|+.
T Consensus 101 ~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~ 142 (179)
T TIGR03598 101 LKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL 142 (179)
T ss_pred hcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 799999977664 5777887777666543 27899999999984
No 26
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=1.2e-14 Score=116.42 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH--HHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL--ELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~--~~i~~~l~~~~~d~ 78 (256)
+|.+||||||++|+|++... .++..+.+|.........+++.++++|||||+.+......... ..+.. + ....|+
T Consensus 6 ~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-~-~~~~d~ 82 (168)
T cd01897 6 AGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA-L-AHLRAA 82 (168)
T ss_pred EcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH-H-HhccCc
Confidence 69999999999999999864 3444445565555555566788999999999965332221111 11111 1 123689
Q ss_pred EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|++.++.. +. +....+++.+.+.+.. .|+++|+||+|+.
T Consensus 83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~ 126 (168)
T cd01897 83 VLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLL 126 (168)
T ss_pred EEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccC
Confidence 99997776532 22 3334566777665422 7999999999985
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.61 E-value=1.5e-14 Score=114.52 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=80.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~v 79 (256)
+|.+|+||||++|+++|...+.++....++...........+..+.+|||||+.+......... ...... ...+|++
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~i 86 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA--LKDVDLV 86 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH--HHhCCEE
Confidence 6999999999999999998766665555555444444455668899999999987654332222 111111 2689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.... +...+..+.+.+... ..++++|+||+|+.
T Consensus 87 ~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 87 LFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred EEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 999777752 456666676666554 16899999999984
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=2e-14 Score=114.96 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=79.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+||||++|+|++......+..++++..........++..+.+|||||+.+...... +.............+|+
T Consensus 8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~ 87 (174)
T cd01895 8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADV 87 (174)
T ss_pred EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCe
Confidence 6999999999999999987655566666666666566677888899999999986532111 11111111111258999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|++.+. ..+.....+++.+... + .++++|+||+|+.+
T Consensus 88 vi~v~d~~~-~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~ 127 (174)
T cd01895 88 VLLVIDATE-GITEQDLRIAGLILEE---G--KALVIVVNKWDLVE 127 (174)
T ss_pred EEEEEeCCC-CcchhHHHHHHHHHhc---C--CCEEEEEeccccCC
Confidence 999977664 3444455555444332 2 79999999999853
No 29
>PRK15494 era GTPase Era; Provisional
Probab=99.60 E-value=1.6e-14 Score=129.37 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|...+.++....+|..........++.++.+|||||+.+... ......+.....+ .++|++
T Consensus 58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l--~~aDvi 135 (339)
T PRK15494 58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL--HSADLV 135 (339)
T ss_pred EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh--hhCCEE
Confidence 6999999999999999998776777666776666666678889999999999975422 2222222222222 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++... .+...+..+++.+.+.- .+.++|+||+|+.
T Consensus 136 l~VvD~~~-s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~ 173 (339)
T PRK15494 136 LLIIDSLK-SFDDITHNILDKLRSLN-----IVPIFLLNKIDIE 173 (339)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCc
Confidence 99976443 46677667777665431 5778999999984
No 30
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=3.7e-14 Score=110.94 Aligned_cols=115 Identities=28% Similarity=0.424 Sum_probs=77.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|++|+||||++|+|++......+...++|........... +..+.+|||||+.+...........+...+ ..+|++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~i 79 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLI 79 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEE
Confidence 69999999999999999876555556666666665555554 678999999999987654442222222222 579999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.+.. .......+....... ..++++|+||+|+.
T Consensus 80 l~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~ 117 (163)
T cd00880 80 LFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLL 117 (163)
T ss_pred EEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccC
Confidence 999777652 233333322222222 27899999999985
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=1.9e-14 Score=132.66 Aligned_cols=117 Identities=22% Similarity=0.364 Sum_probs=87.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|+|+|.+...++..+++|..+.......+|..+.+|||||+.+...... +.....+..-....+|+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999988766777778888777777778888999999999977543321 11111111101258999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|++... ..+..+..++..+.+. + +++++|+||+|+.
T Consensus 258 ~ilV~D~~~-~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 258 VLLVLDATE-GITEQDLRIAGLILEA-G----KALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence 999988775 5777887777766553 2 7999999999985
No 32
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=2e-14 Score=132.91 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=88.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+.+... ....+......++ .++|++
T Consensus 7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i 84 (435)
T PRK00093 7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI--EEADVI 84 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999998777788888888888888888999999999999986322 1111221222222 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++... +++..+..+.+.+.+. .+|+++|+||+|..
T Consensus 85 l~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 85 LFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 99987764 4677777777777765 27999999999964
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=2.6e-14 Score=133.43 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=86.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC-cCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-YVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~-~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+.... .....+......++ ..+|++
T Consensus 44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i 121 (472)
T PRK03003 44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM--RTADAV 121 (472)
T ss_pred EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence 699999999999999998776677777788877777778899999999999986422 11222222222222 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++.++ +.+..+..+.+.+... .+|+++|+||+|+.
T Consensus 122 l~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 122 LFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 99988875 4566677777777643 28999999999984
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=3.5e-14 Score=126.70 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (256)
||.+|||||||+|+|.+... .+++++.+|..+......+ ++.+++++||||+.+..... ..+++.+ .+
T Consensus 164 VG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi------e~ 236 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI------ER 236 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh------hh
Confidence 69999999999999999764 5788888898888887777 56789999999998754432 2344444 47
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|+++++....+....+.+.|......-..+|+++|+||+|+.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 899999988775322233344556565542211237999999999985
No 35
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.56 E-value=3.8e-14 Score=130.86 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=82.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++...+.++.++++|.........++|.++.+|||||+.+....-+. .......++ ..+|++
T Consensus 209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~--~~aD~i 286 (442)
T TIGR00450 209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI--KQADLV 286 (442)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH--hhCCEE
Confidence 69999999999999999887778888888888877788889999999999999764311111 111111122 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.++ +.+..+. ++..+.. .+ +|+++|+||+|+.
T Consensus 287 l~V~D~s~-~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~ 323 (442)
T TIGR00450 287 IYVLDASQ-PLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK 323 (442)
T ss_pred EEEEECCC-CCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence 99988765 3444443 4443332 12 7999999999984
No 36
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.3e-14 Score=129.19 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (256)
||.+|||||||+|+|++... .++.++.+|..+......+.+ .+++++||||+.+..... ..+++.+ .+
T Consensus 165 VG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i------~r 237 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL------ER 237 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH------Hh
Confidence 69999999999999999875 788889999999888877764 579999999998754332 2333333 48
Q ss_pred CcEEEEEEeCC---CCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLD---AYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d---~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++|+|++++ .....+....+++.+......-..+|.++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 99999997665 2122234455666666542211237999999999984
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=4.7e-14 Score=131.70 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=87.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC--cHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.....++..+++|..+......++|..+.+|||||+...... ..+....++.......+|+
T Consensus 217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~ 296 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEV 296 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCE
Confidence 69999999999999999986667777888887777777788999999999998653221 1233333332112268999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++ +.+..+..++..+... + +++++|+||+|+.
T Consensus 297 vilV~Da~~-~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~ 335 (472)
T PRK03003 297 AVVLIDASE-PISEQDQRVLSMVIEA---G--RALVLAFNKWDLV 335 (472)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence 999988775 5677777777666542 2 7999999999985
No 38
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.56 E-value=4.6e-14 Score=126.75 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (256)
+|.+|||||||+|+|++.. +.+++..++|..+......+ +|.++.+|||||+...- .....+.++..+ ....+|+
T Consensus 195 vG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tle~~~~ADl 271 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATLEEVREADL 271 (351)
T ss_pred ECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999987 35666666777777767777 57899999999994321 111122222211 1258999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|+++++....+....+.+.+.+.-..+ +|+++|+||+|+.
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~--~piIlV~NK~Dl~ 314 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAED--IPQLLVYNKIDLL 314 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCC--CCEEEEEEeecCC
Confidence 999987765222222222334444432122 7999999999985
No 39
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1e-13 Score=126.86 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=84.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (256)
+|.++||||||+|+|++... .+++++.+|..+......++ +.+++++||||+.+..... ..+++.+ .+
T Consensus 164 VG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi------er 236 (424)
T PRK12297 164 VGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI------ER 236 (424)
T ss_pred EcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH------hh
Confidence 69999999999999999874 56778888888887777776 7899999999998744322 2344333 47
Q ss_pred CcEEEEEEeCCCC---CCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 76 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 76 ~d~vL~v~~~d~~---r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
+|++++|+++++. ...+....+.+.|......-.-+|.+||+||+|+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 8999999887642 1223344566666654332234899999999997
No 40
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.53 E-value=9.6e-14 Score=128.66 Aligned_cols=113 Identities=24% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+|||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++...-+. ........ ...+|++
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~--~~~aD~i 298 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA--IEEADLV 298 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH--HHhCCEE
Confidence 69999999999999999887778888888888777777889999999999999754321111 01111111 2589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.+. ..+..+..++.. .. .+|+++|+||+|+.
T Consensus 299 l~VvD~s~-~~s~~~~~~l~~-----~~--~~piiiV~NK~DL~ 334 (449)
T PRK05291 299 LLVLDASE-PLTEEDDEILEE-----LK--DKPVIVVLNKADLT 334 (449)
T ss_pred EEEecCCC-CCChhHHHHHHh-----cC--CCCcEEEEEhhhcc
Confidence 99977764 334444444332 11 27999999999985
No 41
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=1.5e-13 Score=127.10 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=87.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|+|+|.+...++..+++|..........++..+.+|||||+........ +.....+..-....+|+
T Consensus 179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 258 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADV 258 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCE
Confidence 6999999999999999998777888888888877666778899999999999976543322 11111111001257899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|++... ..+..+..++..+.+. + +++++|+||+|+.
T Consensus 259 ~ilViD~~~-~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~ 297 (435)
T PRK00093 259 VLLVIDATE-GITEQDLRIAGLALEA-G----RALVIVVNKWDLV 297 (435)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCC
Confidence 999988775 4777888777766553 2 7999999999985
No 42
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=9.7e-14 Score=123.65 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~ 75 (256)
||.+|||||||+|+|.+... .+++++.+|..+......+++ ..++++||||+.+.... ...+++.+ .+
T Consensus 163 vG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi------er 235 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI------ER 235 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH------Hh
Confidence 69999999999999998764 577778888888887777776 89999999999865432 23444444 37
Q ss_pred CcEEEEEEeCCCCC---CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYR---VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r---~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++|+|+++++.. ..+....+.+.+......-..+|+++|+||+|+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 89999998776431 1122334445554432211247999999999984
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.53 E-value=2.8e-13 Score=107.63 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++..... +..+..+.+.......+++ ..+.+|||||... +...+..++ ..+|+
T Consensus 6 iG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~--~~~~~ 75 (161)
T cd01861 6 LGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYI--RDSSV 75 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--ccCCE
Confidence 6999999999999999986532 2223333344444445555 4689999999532 222233333 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+....+.+ .|+++|+||+|+.
T Consensus 76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~ 118 (161)
T cd01861 76 AVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhcc
Confidence 999988876322223345566555544433 7999999999985
No 44
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.52 E-value=1.8e-13 Score=113.62 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... +......|..+......+.+. .+.+|||||+.+... ....+.+...+ ....+|+
T Consensus 47 iG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~d~ 123 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEVAEADL 123 (204)
T ss_pred ECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHHHHhcCCe
Confidence 699999999999999998642 333233344444444455554 899999999865321 12222221111 1247999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........+.+.+......+ .++++|+||+|+.
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~ 166 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLL 166 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccC
Confidence 999988775332222333444454443233 7999999999985
No 45
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1e-13 Score=120.15 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=88.9
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--CcH---HHHHHHHHhhhcCCC
Q 025189 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--VNY---QALELIKGFLLNKTI 76 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~~~---~~~~~i~~~l~~~~~ 76 (256)
|.+|||||||++++++.++ .+.+++.||+.....+.+.++..+.+|||||+.|-.. .+. +....++ .=.
T Consensus 175 G~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-----hl~ 248 (346)
T COG1084 175 GYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-----HLA 248 (346)
T ss_pred cCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-----Hhc
Confidence 8999999999999999986 7888999999999999999999999999999998532 222 2222332 235
Q ss_pred cEEEEEEeCCCCC-CCH-HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r-~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|||+++.+... ++- ....+++.+...|. .|+++|+||.|..
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~ 293 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA 293 (346)
T ss_pred CeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 8999998777655 333 34568899999985 6899999999985
No 46
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=2e-13 Score=133.18 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=88.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|...+.++..+++|........++++..+.+|||||+..... ....+.+....++ ..+|++
T Consensus 281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i 358 (712)
T PRK09518 281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--SLADAV 358 (712)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999988777788888888887777788999999999999874321 1222333333233 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 359 L~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 359 VFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 99977654 4677777787777653 28999999999974
No 47
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=3e-13 Score=124.33 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=76.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (256)
+|.+|||||||+|+|++.+.+ +++..++|.++......+.+. .+.+|||||+... ......+.+...+ ....+|+
T Consensus 203 VG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~~~ADl 279 (426)
T PRK11058 203 VGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQETRQATL 279 (426)
T ss_pred ECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHhhcCCE
Confidence 699999999999999998865 555566777776666666554 8899999999542 1122222222222 2258999
Q ss_pred EEEEEeCCCCCCCHHHHH-HHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~-~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|++.++.. ...+.. +.+.+.+....+ .|+++|+||+|+.
T Consensus 280 IL~VvDaS~~~-~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~ 322 (426)
T PRK11058 280 LLHVVDAADVR-VQENIEAVNTVLEEIDAHE--IPTLLVMNKIDML 322 (426)
T ss_pred EEEEEeCCCcc-HHHHHHHHHHHHHHhccCC--CCEEEEEEcccCC
Confidence 99998876532 223322 233344332222 7999999999985
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.49 E-value=5.1e-13 Score=106.17 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|.+........ ..++|.........+. +..+.+|||||..+ +...+.... .++|
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~--~~ad 76 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA--GGID 76 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh--hcCC
Confidence 5999999999999999864222211 1234444444445555 78999999999732 222222222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|++++.. ........+..+.. .+. +|+++|+||+|+.
T Consensus 77 ~ii~V~d~~~~-~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 77 LVLLVVAADEG-IMPQTREHLEILEL-LGI---KRGLVVLTKADLV 117 (164)
T ss_pred EEEEEEECCCC-ccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence 99999887642 22333334443332 231 4899999999984
No 49
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=3.2e-13 Score=131.80 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=87.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc--HHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.+...++..+++|.........++|.++.+|||||+....... .++...++.......+|+
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv 535 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL 535 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence 699999999999999999876677788888887777778899999999999987532221 233333322112268999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|++.+. ..+..+..++..+.+. + +++++|+||+|+.
T Consensus 536 vilViDat~-~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~ 574 (712)
T PRK09518 536 ALFLFDASQ-PISEQDLKVMSMAVDA---G--RALVLVFNKWDLM 574 (712)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEEchhcC
Confidence 999988775 5677777777666543 2 7999999999985
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.48 E-value=3.7e-13 Score=107.91 Aligned_cols=112 Identities=21% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ..+.++......... ......+.+|||||.......... .+ ..+|+
T Consensus 7 vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~------~~~~~ 75 (165)
T cd04140 7 FGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRL---SI------SKGHA 75 (165)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHH---Hh------hcCCE
Confidence 699999999999999987531 122222221111112 223457889999998653211111 11 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+.+..+.. ...|+++|.||+|+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 999999886433334456667676665432 237899999999985
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.48 E-value=4.4e-13 Score=107.14 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++....... .++.+..........++ ..+.+|||||.... ......++ ..+++
T Consensus 9 vG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~--~~~~~ 78 (165)
T cd01868 9 IGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY-------RAITSAYY--RGAVG 78 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH--CCCCE
Confidence 699999999999999987642222 22333233333444555 46789999996421 11112222 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++......-.++++.+.+....+ .|+++|.||+|+..
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~ 122 (165)
T cd01868 79 ALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH 122 (165)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 999988875222222234555555554333 68999999999853
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=6.4e-13 Score=105.70 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+... ...+.+++.........+++ ..+.+|||||..........+ + .+.|+
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~~~ 75 (163)
T cd04136 7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLY-------I--KNGQG 75 (163)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHH-------h--hcCCE
Confidence 69999999999999998753 22333343333333344555 456789999986443221111 1 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+.+.... ...|+++|+||+|+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 119 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998887633223334455566554321 137899999999985
No 53
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=5.4e-13 Score=123.85 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=81.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (256)
||.+|||||||+|+|.+... .+++++.+|..+......+.+.+++++||||+.+..... .++++.+ ..+
T Consensus 165 VG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi------era 237 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI------ERC 237 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH------Hhc
Confidence 69999999999999999865 567888889888888888888999999999997654322 2233333 478
Q ss_pred cEEEEEEeCCCC---C-CCHHHHHHHHHHHhhcC---------CcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAY---R-VDDLDRQIIKAVTGTFG---------KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~---r-~~~~~~~~~~~l~~~~g---------~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++. + ..+....+.+.|..... .-..+|.++|+||+|+.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 999999776531 1 11122233344544321 11248999999999984
No 54
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.47 E-value=1.6e-12 Score=106.95 Aligned_cols=114 Identities=21% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhh-cCC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL-NKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~-~~~ 75 (256)
+|.+|+|||||+|+|++.. .+.++...++|.....+. . +.++.+|||||+....... ..+...+..++. ...
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (196)
T PRK00454 30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTREN 106 (196)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCcc
Confidence 6999999999999999975 444555455555444332 2 4689999999987643222 223223333332 235
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+++++|++.+. +++..+..+.+.+... ..++++++||+|+.
T Consensus 107 ~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 107 LKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL 148 (196)
T ss_pred ceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 688888866554 4556665666655432 27899999999984
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=5.5e-13 Score=106.77 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||++++.+........ +..+.........+++ ..+.+|||||... +......++ ..+|+
T Consensus 9 vG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~ 78 (165)
T cd01864 9 IGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY--RSANG 78 (165)
T ss_pred ECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--ccCCE
Confidence 6999999999999998765321111 1111222333445555 4789999999532 111222222 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+......+ .|+++|.||+|+..
T Consensus 79 ~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~ 122 (165)
T cd01864 79 AIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 999988876322233456667666543333 68999999999853
No 56
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.46 E-value=6.6e-13 Score=105.79 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++++.... ..+.++ +..........+ ...+.+|||||.... ......++ .++|
T Consensus 6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d 74 (168)
T cd04119 6 MGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY--KDTQ 74 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--ccCC
Confidence 699999999999999998642 122222 111112223333 357789999997432 11222222 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC---cccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK---QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~---~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....+++.+.+..+. ....|+++|.||+|+.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 999998887532223344566666665542 1237899999999985
No 57
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.46 E-value=7.5e-13 Score=115.39 Aligned_cols=117 Identities=22% Similarity=0.373 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CC------CCccee--EEEEeeeCCe--EEEEEeCCCCCCCCcCc---HHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-FQ------SEALRP--VMVSRSKGGF--TLNIIDTPGLVEAGYVN---YQALEL 66 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-~~------~~t~~~--~~~~~~~~g~--~v~liDTPG~~~~~~~~---~~~~~~ 66 (256)
+|.+|+|||||||+|++........ .+ ..+... ......-+|. +++|+||||+++.-... ..+...
T Consensus 10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~y 89 (281)
T PF00735_consen 10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDY 89 (281)
T ss_dssp EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHH
Confidence 5999999999999999986544321 11 011111 1223333444 67899999999853211 111111
Q ss_pred H----HHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 67 I----KGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 67 i----~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
| ..++ .+.++|++||.++.+..++.+.|.+.++.|.+. .++|-|+.|+|..
T Consensus 90 I~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l 155 (281)
T PF00735_consen 90 IESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred HHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence 1 1111 135689999998888777999999999988876 6999999999985
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.46 E-value=9.9e-13 Score=104.70 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|++++... ++...+++.........+++ ..+.+|||||..+.... ...++ .+.|+
T Consensus 8 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~~~ 76 (164)
T cd04145 8 VGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAM-------REQYM--RTGEG 76 (164)
T ss_pred ECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHH-------HHHHH--hhCCE
Confidence 69999999999999998753 33333443333333344555 46789999997644321 11222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-.+....++..+.+.... ...|+++|+||+|+.
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~ 120 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccc
Confidence 99998887633112233445555544321 126999999999985
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.46 E-value=8.8e-13 Score=106.10 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++........ ...+..........++ ..+.+|||||... +......++ ..+|+
T Consensus 10 vG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~--~~~d~ 79 (168)
T cd01866 10 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY--RGAAG 79 (168)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--ccCCE
Confidence 6999999999999999876422221 1112222222233343 5789999999532 111222223 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++......-..++..+.+....+ .|+++|.||.|+.+
T Consensus 80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~ 123 (168)
T cd01866 80 ALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLES 123 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 999988875322233344555555543333 78999999999853
No 60
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.45 E-value=4e-13 Score=107.38 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|+||||++|+|++..... ....++|.......... .+..+.+|||||.... ......++ ..+|
T Consensus 6 iG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~--~~~d 75 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA--SLTD 75 (168)
T ss_pred EecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--hhcC
Confidence 6999999999999999876432 22233444333334444 3778999999997432 11111122 5799
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|++++.. ........+..+.. .+ .|+++|+||+|+.
T Consensus 76 ~il~v~d~~~~-~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~ 115 (168)
T cd01887 76 IAILVVAADDG-VMPQTIEAIKLAKA-AN----VPFIVALNKIDKP 115 (168)
T ss_pred EEEEEEECCCC-ccHHHHHHHHHHHH-cC----CCEEEEEEceecc
Confidence 99999887752 33444445554443 22 7899999999984
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.44 E-value=1e-12 Score=108.13 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+.... ..+.+++.........+++. .+.+|||||........ ..++ .++|+
T Consensus 5 vG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad~ 73 (190)
T cd04144 5 LGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR-------DQWI--REGEG 73 (190)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH--HhCCE
Confidence 699999999999999976532 22333333222233345554 47889999974332111 1122 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~ 123 (256)
+|+|+++++....+.-..+++.+...... ....|+++|+||+|+.
T Consensus 74 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 74 FILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 99999887632223334566666655431 1237899999999985
No 62
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=1.1e-12 Score=105.09 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++.+.... ..+.++.. .........++ ..+.+|||||...... ....++ .+.|
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~--~~~~ 75 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYY--RGAM 75 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHc--cCCc
Confidence 699999999999999987631 22222211 11112223333 5789999999643211 111112 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++++....+.-..+++.+.+..... .|+++|.||+|+.+
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~ 120 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMED 120 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCc
Confidence 9999988875322222344555665544333 68999999999853
No 63
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.44 E-value=2.4e-12 Score=106.87 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|++++.... ..+.+++ .........++| ..+.+|||||..+... ...++.......+ ..+
T Consensus 6 vG~~~vGKTsLi~~~~~~~f~--~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~--~~a 81 (198)
T cd04142 6 LGAPGVGKTAIVRQFLAQEFP--EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL--RNS 81 (198)
T ss_pred ECCCCCcHHHHHHHHHcCCCC--cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh--ccC
Confidence 699999999999999987642 2222232 222223345666 4678999999865321 2222222111112 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++..-.+....+.+.+.+... .....|+++|.||+|+.
T Consensus 82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 999999888753222223445555555431 11237999999999985
No 64
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.44 E-value=1.5e-12 Score=103.07 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|++++....... ...++...........+ ..+.+|||||...... ....++ ..+|+
T Consensus 6 ~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~--~~~~~ 75 (162)
T cd04123 6 LGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY--RDADG 75 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--ccCCE
Confidence 699999999999999987653211 11221222222233333 4688999999543211 111122 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+++.+.+....+ .++++|+||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~ 118 (162)
T cd04123 76 AILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 999988876332223344556666665543 7999999999985
No 65
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.44 E-value=1.8e-12 Score=101.71 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+||||||++|++++....... .+..+.......... .+..+.+|||||... +......++ ..+|+
T Consensus 6 ~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~d~ 75 (159)
T cd00154 6 IGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY--RGAHG 75 (159)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--cCCCE
Confidence 699999999999999998653321 111111222222333 346789999999732 112222233 57999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-.+....++..+......+ .|+++|+||+|+.
T Consensus 76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~ 118 (159)
T cd00154 76 AILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLE 118 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEccccc
Confidence 999988875221222334555555554223 7999999999985
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.44 E-value=1.4e-12 Score=104.35 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....++.+..........++ ..+.+|||||.... ......++ ..+|+
T Consensus 8 ~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~ 77 (166)
T cd01869 8 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY--RGAHG 77 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh--CcCCE
Confidence 699999999999999987542 22112222222223344454 46789999996422 11112222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++......-..+++.+.+....+ .++++|.||+|+.
T Consensus 78 ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~ 120 (166)
T cd01869 78 IIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcc
Confidence 999988875321222234555555543233 6899999999985
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.44 E-value=1.3e-12 Score=103.97 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .+..+.........+++ ..+.+|||||.... ......++ ..+|+
T Consensus 6 ~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~~~~ 75 (161)
T cd04113 6 IGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY--RGAAG 75 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--cCCCE
Confidence 699999999999999987642211 11111222222334444 46789999997432 11222222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++......-..++..+......+ .|+++|+||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~ 119 (161)
T cd04113 76 ALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcch
Confidence 999988886332223345555555554444 68999999999853
No 68
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.44 E-value=1.5e-12 Score=108.36 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+||||||+++++..... ...+.++ +.........++| ..+.+|||+|...... ....++ .++|
T Consensus 6 lG~~gVGKTSli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~--~~ad 74 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYY--RSAK 74 (202)
T ss_pred ECcCCCCHHHHHHHHHhCCC--CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHh--cCCC
Confidence 69999999999999997653 2222222 2233333455666 5778999999753321 112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+.-..+++.+.+...++ .++++|.||+|+.
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~ 118 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccc
Confidence 9999999987432233345666666654444 7899999999985
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.43 E-value=1e-12 Score=104.62 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++....... .+............++ +..+.+|||||.... ......++ .++|+
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~ 76 (163)
T cd01860 7 LGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY--RGAAA 76 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh--ccCCE
Confidence 699999999999999998743211 1111111112233344 456789999995321 11111122 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-......++..+......+ .++++|.||+|+.
T Consensus 77 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~ 119 (163)
T cd01860 77 AIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLE 119 (163)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 999988775332233445666666654333 7899999999985
No 70
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.43 E-value=2.2e-12 Score=102.91 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++++.... ....++...........+|. .+.+|||||..........+ + .++|+
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~------~~ad~ 75 (163)
T cd04176 7 LGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY---I------KNGQG 75 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHH---H------hhCCE
Confidence 699999999999999987542 22233333333334455554 56789999975443222221 1 47999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.+....-..+++.+.+.... ...|+++|+||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~ 119 (163)
T cd04176 76 FIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence 99999888643223334555666655321 237999999999985
No 71
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.43 E-value=1.6e-12 Score=104.41 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++.+.... ..+.++ +.........+++ ..+.+|||||..... .....++ ..+|
T Consensus 9 vG~~~~GKSsl~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~--~~ad 77 (167)
T cd01867 9 IGDSGVGKSCLLLRFSEDSFN--PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY--RGAM 77 (167)
T ss_pred ECCCCCCHHHHHHHHhhCcCC--cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh--CCCC
Confidence 699999999999999987531 222222 1122222334454 467899999964321 1112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++++......-.+++..+......+ .|+++|.||+|+.+
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~ 122 (167)
T cd01867 78 GIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEE 122 (167)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 9999988875332222234556565543333 68999999999853
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.43 E-value=1.3e-12 Score=105.31 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+.... ..+.++...........++. .+.+|||||..+.......+ ..+.|+
T Consensus 4 ~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---------~~~~d~ 72 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLS---------YPDTDV 72 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhh---------cCCCCE
Confidence 699999999999999987542 22222222222223344554 57899999976543221111 158999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+..+ + .|+++|.||+|+.
T Consensus 73 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~ 115 (174)
T smart00174 73 FLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLR 115 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhh
Confidence 99999887632 32222346666666543 2 7999999999985
No 73
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.7e-13 Score=119.52 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=87.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|++|||||||+|+|..++.+.|++.+++|++......+++|+++.++||.|+.+.....-+.+..-+..-....+|+++
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~ 353 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL 353 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence 69999999999999999999999999999999999999999999999999999983222222221111111236899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh---cCC----cccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGT---FGK----QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~---~g~----~~~~~~ivv~Tk~D~~ 123 (256)
+|++... ..+.++..+.+.+... ... .-..+.+++.||.|+.
T Consensus 354 ~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 354 LVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred EEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 9977643 3344555544444433 110 1136788888998875
No 74
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.43 E-value=1.6e-12 Score=103.40 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....+..+..........++ ..+.+|||||... +......++ ..+|+
T Consensus 6 ~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~~d~ 75 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY--RGAVG 75 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--CCCCE
Confidence 699999999999999987642 12112222222333445555 4778999999532 112222233 57999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++.+..-.+.-.+++..+....+.+ .|+++|.||+|+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~ 119 (164)
T smart00175 76 ALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccc
Confidence 999988764221122233555555444333 79999999999753
No 75
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.43 E-value=1.2e-12 Score=104.00 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|+|||||+|++++.... ....++ +.........+ .+..+.+|||||..+. ......++ .+
T Consensus 6 vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~ 74 (162)
T cd04106 6 VGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY--RG 74 (162)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh--cC
Confidence 699999999999999987532 122222 11111122222 3467899999995322 11122222 68
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.|++++|+++++....+....+++.+.+... + .|+++|+||+|+..
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~ 120 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLD 120 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhccc
Confidence 9999999888763322233345555544332 2 78999999999853
No 76
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.43 E-value=2.9e-12 Score=108.99 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|+|||||+|+|+|... .++.++.+|..+......+++..+.+|||||+.+...........+..+ ...+|+++
T Consensus 6 vG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~ad~il 82 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTADLIL 82 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccCCEEE
Confidence 69999999999999999864 4666777777777777788999999999999876542222211111111 25899999
Q ss_pred EEEeCC
Q 025189 81 YADRLD 86 (256)
Q Consensus 81 ~v~~~d 86 (256)
+|++.+
T Consensus 83 ~V~D~t 88 (233)
T cd01896 83 MVLDAT 88 (233)
T ss_pred EEecCC
Confidence 996654
No 77
>PRK04213 GTP-binding protein; Provisional
Probab=99.42 E-value=2.1e-12 Score=106.94 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhh--cC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLL--NK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~--~~ 74 (256)
+|.+|||||||+|+|+|... .++..+++|..+... .++ .+.+|||||++...... +.+...+..++. ..
T Consensus 15 ~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T PRK04213 15 VGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD 89 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence 69999999999999999763 455455555544332 233 58999999986543322 222222222321 24
Q ss_pred CCcEEEEEEeCCCCC-C---------CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYR-V---------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r-~---------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++++++|++.+... + ...+..+++.+... + .|+++|+||+|+.
T Consensus 90 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~p~iiv~NK~Dl~ 143 (201)
T PRK04213 90 RILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL---G--IPPIVAVNKMDKI 143 (201)
T ss_pred hheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc---C--CCeEEEEECcccc
Confidence 678999996654310 1 11233444444432 2 7999999999984
No 78
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.42 E-value=1.3e-12 Score=104.51 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=66.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc---cCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV---NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~---~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|.+...... .....+|.........+++..+.+|||||..+.. .....++ .++|
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~~ 75 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYY--AECH 75 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--CCCC
Confidence 69999999999999987532100 1111223333334556778999999999985422 1112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
++++|++.++.. ........+.+.... ....|+++|+||+|+.
T Consensus 76 ~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 76 AIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 999997765421 112222222222221 1127999999999984
No 79
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=1.8e-12 Score=106.71 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|.+.+... ..+...+++. ........+++ ..+.||||||.... ......++ .++|
T Consensus 6 vG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~ad 75 (191)
T cd04112 6 LGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY--RDAH 75 (191)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc--cCCC
Confidence 69999999999999998753 2222222222 22222234444 46789999995321 11112222 5799
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|++++.....+.-..++..+.+....+ .|+++|+||+|+.
T Consensus 76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~ 119 (191)
T cd04112 76 ALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccch
Confidence 9999988875321222344566666654433 6899999999985
No 80
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.42 E-value=2.1e-12 Score=103.22 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+++.... ...+.+++.........+++. .+.+|||||..........+ + .+.|+
T Consensus 7 ~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~d~ 75 (164)
T cd04175 7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLY-------M--KNGQG 75 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHH-------H--hhCCE
Confidence 69999999999999986532 233344444333334455544 56799999985433221111 1 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 119 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcch
Confidence 9999888753322333445555554322 1126899999999985
No 81
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.42 E-value=3.2e-12 Score=105.03 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCcceeEEEEee--eCCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV-----------------NSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..|+|||||+++|++...... ......|......... ..++.++++||||..
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~------- 81 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE------- 81 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-------
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-------
Confidence 58999999999999997532100 0012334445555566 889999999999974
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+...+ ..+|++++|++... .......+.++.+...- .|+++|+||+|+.
T Consensus 82 ~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS
T ss_pred ceeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch
Confidence 2333443333 58999999977765 36777777777776653 6799999999985
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.42 E-value=2.4e-12 Score=102.65 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+.... ....+++..........++ ..+.+|||||..+..... ..++ ...|+
T Consensus 6 ~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------~~~~--~~~~~ 74 (164)
T smart00173 6 LGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMR-------DQYM--RTGEG 74 (164)
T ss_pred ECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHH-------HHHH--hhCCE
Confidence 699999999999999987632 2223333333333344554 467799999976532111 1122 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+.+.+.+..... -.|+++|.||+|+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pii~v~nK~Dl~ 118 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccc
Confidence 999988875322222234445554443321 36899999999985
No 83
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.42 E-value=1e-12 Score=105.31 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++............ ...+.+|||||..+......... ..+|+
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~---------~~~~~ 74 (171)
T cd00157 6 VGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSY---------PNTDV 74 (171)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhc---------CCCCE
Confidence 699999999999999998641 111122221122222233 45689999999875432221111 57899
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.. +......++..+....+ -.|+++|+||+|+.+
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 99998887622 44444556666655543 289999999999853
No 84
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.41 E-value=2.1e-12 Score=104.94 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+... ...+.++..........+++ ..+.+|||||..........+ + .++|+
T Consensus 7 vG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~a~~ 75 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS-------Y--PQTDV 75 (175)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhh-------c--ccCCE
Confidence 69999999999999998653 23333333222222334555 567899999986543222111 1 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+.+..+ + .|+++|.||+|+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~ 118 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhh
Confidence 99999988633 32222346666655432 2 7999999999984
No 85
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.41 E-value=2.5e-12 Score=101.78 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........+++. .+.+|||||...... ....++ ...|+
T Consensus 7 iG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~--~~~~~ 75 (162)
T cd04138 7 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM--RTGEG 75 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH--hcCCE
Confidence 69999999999999998753 223333333333333445554 467899999754221 111222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 119 (162)
T cd04138 76 FLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998888632112223344555544321 127999999999985
No 86
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.41 E-value=1.9e-12 Score=102.31 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.. ..+...+++..........++ ..+.+||+||..+.. .....++ .+.|+
T Consensus 5 ~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~~~~~ 73 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--RQGDG 73 (160)
T ss_pred ECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--hcCCE
Confidence 6999999999999999876 234444444444444445553 567899999975421 1112222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+....+. ...|+++|+||+|...
T Consensus 74 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 99998887532222334455555555441 1289999999999853
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.41 E-value=2.4e-12 Score=107.68 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++....... +..+.........+++ ..+.+|||||......... .++ ..+|+
T Consensus 20 vG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~--~~~d~ 88 (211)
T PLN03118 20 IGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS-------SYY--RNAQG 88 (211)
T ss_pred ECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH-------HHH--hcCCE
Confidence 699999999999999987642211 1111122222334444 4778999999754322111 122 58899
Q ss_pred EEEEEeCCCCCCCHHHHH-HHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~-~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+.... +...+. .+......++++|.||+|+..
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccc
Confidence 999988875221111112 222232 222222258899999999853
No 88
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.40 E-value=5e-12 Score=100.27 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=72.7
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhc-CC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLN-KT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~-~~ 75 (256)
+|.+|+|||||+|+|++.. ....+...++|.....+ ..++ .+++|||||+++.... .+.+...+..++.. ..
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--EccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 6999999999999999533 22333333444433322 2233 8899999999875332 12233334444432 35
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++++++++.+. .....+..+++.+... + .++++|+||+|+.
T Consensus 82 ~~~~~~v~d~~~-~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~ 123 (170)
T cd01876 82 LKGVVLLIDSRH-GPTEIDLEMLDWLEEL-G----IPFLVVLTKADKL 123 (170)
T ss_pred hhEEEEEEEcCc-CCCHhHHHHHHHHHHc-C----CCEEEEEEchhcC
Confidence 788989976654 2345666666666654 2 6899999999984
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.40 E-value=3.2e-12 Score=102.33 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++++... .+.+.+++.........+++. .+.+|||||....... .....+ ..+|+
T Consensus 5 vG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~------~~~d~ 74 (165)
T cd04146 5 LGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--QLERSI------RWADG 74 (165)
T ss_pred ECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--hHHHHH------HhCCE
Confidence 69999999999999987542 233333332222333445554 5789999998742111 111222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+++.+.+........|+++|.||+|+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 999988875322222344555555543111127899999999974
No 90
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.40 E-value=3.6e-12 Score=102.15 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++.+... ....+++. ..........++ ..+.+|||||.... ......++ .++|
T Consensus 8 iG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~~ 76 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY--RGAA 76 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--cCCC
Confidence 69999999999999998753 22222222 111122233444 46789999996422 11122222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++++....+.-..+++.+......+ .++++|.||+|+..
T Consensus 77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~ 121 (166)
T cd04122 77 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEA 121 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 9999988876322222334555554443333 68999999999853
No 91
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.40 E-value=2e-12 Score=121.65 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=89.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC--cCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+||||||++|+|+|.+. .++++++.|.+-......+.|..+.++|+||.++-. ..++.+. ++++.+..+|+
T Consensus 9 vGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Va---r~~ll~~~~D~ 84 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVA---RDFLLEGKPDL 84 (653)
T ss_pred ecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHH---HHHHhcCCCCE
Confidence 69999999999999999976 799999999999999999999999999999999853 2333332 45566689999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCch
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY 130 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~ 130 (256)
++-| +|+..+..+-.-.+ ++.+. | .|+++++|.+|..+.++..+
T Consensus 85 ivnV--vDAtnLeRnLyltl-QLlE~-g----~p~ilaLNm~D~A~~~Gi~I 128 (653)
T COG0370 85 IVNV--VDATNLERNLYLTL-QLLEL-G----IPMILALNMIDEAKKRGIRI 128 (653)
T ss_pred EEEE--cccchHHHHHHHHH-HHHHc-C----CCeEEEeccHhhHHhcCCcc
Confidence 9999 66644433322222 33333 2 78999999999875555433
No 92
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.40 E-value=4.3e-12 Score=102.81 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++.+.+.... ....++..........++| ..+.+|||||..+..... ..++ .+.|+
T Consensus 8 vG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~-------~~~~--~~~d~ 76 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMR-------DQYM--RCGEG 76 (172)
T ss_pred ECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHh-------HHHh--hcCCE
Confidence 699999999999999987532 2222332222223345556 467899999986432211 1122 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+.+.+.+.... ...|+++|.||+|+.
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~-~~~piilvgNK~Dl~ 120 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRLT-EDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcCC-CCCCEEEEEEChhhh
Confidence 99999998743222233455555554221 127999999999984
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.40 E-value=3.4e-12 Score=102.03 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||++++++...... ..++. ..........++ ..+.+|||||...... ....++ .+.|
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~--~~~d 74 (161)
T cd04124 6 LGDSAVGKSKLVERFLMDGYEPQ--QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYY--HKAH 74 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCC--cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHh--CCCC
Confidence 69999999999999998653211 11111 111122233443 4678999999753221 112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+|+++++.........++..+.+... ..|+++|+||+|+.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 99999888753222233456666665432 27999999999973
No 94
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=2.1e-12 Score=105.74 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+||||||++|.+.+.....+ .+|..+......+++.++.+|||||..... .....++ .++|+++
T Consensus 23 vG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~--~~ad~ii 89 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQAR-------RLWKDYF--PEVNGIV 89 (184)
T ss_pred ECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence 69999999999999999754322 123333444556778899999999975321 1122222 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
||++..+.. ........+.+.+.. ..-.|+++|+||+|+.
T Consensus 90 ~vvD~~~~~---~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 90 YLVDAYDKE---RFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred EEEECCcHH---HHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 997765421 111122222222221 0127899999999983
No 95
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.39 E-value=4.9e-12 Score=101.16 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++.+++.... ....+............+++ ..+.+|||||...... ....+. ..+|+
T Consensus 6 vG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~--~~~~~ 75 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY--RRAQG 75 (161)
T ss_pred ECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--cCCcE
Confidence 699999999999999987642 11111112222223344555 4678999999643221 111222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+++.+.....++ .++++|.||+|+.
T Consensus 76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~ 118 (161)
T cd04117 76 IFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEE 118 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 999999887432233345566565543333 6899999999985
No 96
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.39 E-value=3.3e-12 Score=121.97 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=79.3
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEEE
Q 025189 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~vL 80 (256)
|.+||||||++|+++|... .+++++++|.+......++++.++.+|||||..+.... .++. ..+.++....+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~--v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE--VARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH--HHHHHHhhcCCCEEE
Confidence 8999999999999999864 67888888887777777788899999999999875332 2211 122333346899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+|++.+ .... .......+.+. + .|+++|+||+|+.+
T Consensus 78 ~VvDat--~ler-~l~l~~ql~~~---~--~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 78 NVVDAS--NLER-NLYLTLQLLEL---G--IPMILALNLVDEAE 113 (591)
T ss_pred EEecCC--cchh-hHHHHHHHHhc---C--CCEEEEEehhHHHH
Confidence 995544 3332 23333333332 2 79999999999853
No 97
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.39 E-value=1.7e-12 Score=105.55 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|.+|+|||||+|+|++........ ..+.+...........+..+.+|||||..+.. .
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-------~ 77 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS-------S 77 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH-------H
Confidence 5999999999999999875432110 11223333344456668889999999985321 1
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
....++ ..+|++++|++... .....+..++..+... ..++++|+||+|+..
T Consensus 78 ~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 EVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIAREG-----GLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcc
Confidence 122222 48999999977664 3445555666555541 289999999999863
No 98
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.39 E-value=4.1e-12 Score=106.64 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|++.+... ...+.++ +.+.......++ ...+.||||||..... ..+..++ .++
T Consensus 6 vG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~--~~a 74 (215)
T cd04109 6 LGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYI--YGA 74 (215)
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHh--hcC
Confidence 69999999999999998753 2222222 223222333343 3678999999964221 1222222 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++....+.-..+++.+.+..+. ....++++|.||+|+.
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 9999998887633223334566777666543 1124689999999985
No 99
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.39 E-value=3.8e-12 Score=109.22 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........++| ..+.||||+|..+..... .. ++ ...|+
T Consensus 6 lG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~-----~~--~~--~~ad~ 74 (247)
T cd04143 6 LGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMR-----RL--SI--LTGDV 74 (247)
T ss_pred ECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHH-----HH--Hh--ccCCE
Confidence 69999999999999987653 22333343333333445555 567899999975432111 10 11 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcC-------CcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFG-------KQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g-------~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....+++.+.+... .....|+++|+||+|+..
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 9999999863222333455555554311 112379999999999853
No 100
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.39 E-value=1.7e-12 Score=104.24 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=43.4
Q ss_pred EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 45 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 45 v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
++|+||||+.+......++. .+++ +..|++|||.+.+. .++..+...+........ .++++|+||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~---~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEIT---EEYL--PKADVVIFVVDANQ-DLTESDMEFLKQMLDPDK----SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHH---HHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHHTTTC----SSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHH---HHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHhcCCC----CeEEEEEcCC
Confidence 68999999987544433333 3333 68999999977764 355556666555444332 5699999985
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.39 E-value=5.5e-12 Score=101.67 Aligned_cols=108 Identities=8% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+... .. .. +|.........+.+..+.+|||||....... ....+ .+.|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~--~~-~~-~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~---~~~~~------~~ad~ii 71 (169)
T cd04158 5 LGLDGAGKTTILFKLKQDEF--MQ-PI-PTIGFNVETVEYKNLKFTIWDVGGKHKLRPL---WKHYY------LNTQAVV 71 (169)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CC-cC-CcCceeEEEEEECCEEEEEEECCCChhcchH---HHHHh------ccCCEEE
Confidence 69999999999999998742 22 22 2333333445677889999999998543211 11111 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||+++++.. +++. ...+..+.+.... ...|+++|.||+|+.
T Consensus 72 ~V~D~s~~~s~~~~-~~~~~~~~~~~~~-~~~piilv~NK~Dl~ 113 (169)
T cd04158 72 FVVDSSHRDRVSEA-HSELAKLLTEKEL-RDALLLIFANKQDVA 113 (169)
T ss_pred EEEeCCcHHHHHHH-HHHHHHHhcChhh-CCCCEEEEEeCcCcc
Confidence 998877532 3222 2333333222111 126899999999984
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.38 E-value=2.2e-12 Score=104.25 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++.... ...+ |.........+++..+.+|||||..... .....++ .++|+++
T Consensus 20 vG~~~~GKTsL~~~l~~~~~~---~~~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~~d~~i 86 (173)
T cd04154 20 LGLDNAGKTTILKKLLGEDID---TISP-TLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYF--ESTDALI 86 (173)
T ss_pred ECCCCCCHHHHHHHHccCCCC---CcCC-ccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence 699999999999999987432 1222 2222233445678899999999975321 1122222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHh-hcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTG-TFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~-~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+.+ .... ..|+++|+||+|+.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~ 128 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLP 128 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccc
Confidence 99887753211112223333222 1112 37999999999985
No 103
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.38 E-value=3.6e-12 Score=102.54 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--e--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--R--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|+++..... .... .|....... . ......+.+|||||..........+. ..+
T Consensus 6 vG~~~vGKTsli~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~~ 73 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGEFE--KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY---------IGG 73 (166)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHh---------cCC
Confidence 699999999999999865421 1111 122222211 1 22346789999999865433322221 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++......-..+++.+.+..+ ..|+++|.||+|+.
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 74 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 999999888753221222346666666654 38999999999984
No 104
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.38 E-value=4.8e-12 Score=111.43 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=79.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---CCCC----CcceeEEEE--eeeCCe--EEEEEeCCCCCCCC---cCcHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN---SFQS----EALRPVMVS--RSKGGF--TLNIIDTPGLVEAG---YVNYQALEL 66 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~---~~~~----~t~~~~~~~--~~~~g~--~v~liDTPG~~~~~---~~~~~~~~~ 66 (256)
+|.+|.||||++|+|++....... ...+ .|....... ..-+|+ +++++|||||||.- ..-+-+...
T Consensus 29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~y 108 (373)
T COG5019 29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDY 108 (373)
T ss_pred ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHH
Confidence 699999999999999998432211 1111 122222222 233454 67899999999952 111112211
Q ss_pred H----HHhh------------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 67 I----KGFL------------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 67 i----~~~l------------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
| .+++ .+.++|++||.++..+..+.+.|..+++.|.+. .++|-|+.|+|...
T Consensus 109 I~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~lT 176 (373)
T COG5019 109 IDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccccCC
Confidence 1 1122 245799999999988878999999999999887 69999999999863
No 105
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.38 E-value=6.8e-12 Score=100.60 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....++.+.........+++. .+.+|||||..... .....++ .++|+
T Consensus 6 iG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~ 75 (172)
T cd01862 6 LGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY--RGADC 75 (172)
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--cCCCE
Confidence 699999999999999987642 111112222222223345554 56799999964321 1112222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....+.+.+...... ....|+++|+||+|+..
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99998887532112222334444333321 11378999999999964
No 106
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=3.1e-12 Score=104.84 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+..... ...++.+.........+++ ..+.+|||||...... ....++ .++|+
T Consensus 6 ~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~--~~~d~ 75 (188)
T cd04125 6 IGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY--RGAHG 75 (188)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--cCCCE
Confidence 6999999999999999876421 1111222222223334444 4668999999643211 112222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++......-..+++.+....+.. .++++|.||+|+.
T Consensus 76 iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~ 118 (188)
T cd04125 76 YLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLV 118 (188)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence 999988875322222234555565554443 6899999999985
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=3.7e-12 Score=102.27 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.+.... ...+.+. ........+ .+..+.+|||||..+.. ... ..++ ...|+
T Consensus 6 vG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~----~~~~--~~ad~ 73 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR---ANL----AAEI--RKANV 73 (166)
T ss_pred ECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh---HHH----hhhc--ccCCE
Confidence 699999999999999987542 2222221 111122223 45678899999976432 111 1222 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+.+... ..|+++|+||+|+.
T Consensus 74 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~ 116 (166)
T cd01893 74 ICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLR 116 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence 99998887522 22212345555655432 27999999999985
No 108
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.37 E-value=3.5e-12 Score=101.15 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+||||||++|++++.... ... .|.........+.+..+.+|||||...... ....++ ..+|+++
T Consensus 5 iG~~~~GKssli~~~~~~~~~---~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~~~~i 71 (158)
T cd00878 5 LGLDGAGKTTILYKLKLGEVV---TTI-PTIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENTNGII 71 (158)
T ss_pred EcCCCCCHHHHHHHHhcCCCC---CCC-CCcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccCCEEE
Confidence 699999999999999998632 111 222233344566788999999999754311 112222 4789999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++.... +... ...+..+.+... ..-.|+++|+||+|+.
T Consensus 72 ~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~ 113 (158)
T cd00878 72 FVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence 997776531 2222 223333322211 1137999999999985
No 109
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37 E-value=4.5e-12 Score=104.18 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++++.... ..+.++...........++ ..+.+|||||..+.......+ + .++|+
T Consensus 6 vG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~---~------~~a~~ 74 (189)
T cd04134 6 LGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLS---Y------ADTDV 74 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccccc---c------cCCCE
Confidence 699999999999999987542 2222222122222233444 578999999986543222111 1 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +...+..++..+.+... ..|+++|.||+|+.
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~ 117 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 99999998743 32233346666665432 27899999999985
No 110
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.37 E-value=5.4e-12 Score=100.61 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||++++.+........+.+++ ......... ....++.+|||||... +......++ ..+
T Consensus 6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~ 76 (164)
T cd04101 6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW--ESP 76 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh--CCC
Confidence 699999999999999864221223332222 122122222 2346889999999532 112223333 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++....+....+++.+.+.. . ..|+++|.||+|+.
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~ 120 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRTAS-K--HMPGVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence 99999988875321122245555555442 1 27999999999985
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.37 E-value=4.1e-12 Score=100.89 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+.... ...+.++ ..........++..+.+|||||..... .....++ .++|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~-~~~~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~d~ii 73 (162)
T cd04157 5 VGLDNSGKTTIINQLKPENAQ-SQIIVPT-VGFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNIQGII 73 (162)
T ss_pred ECCCCCCHHHHHHHHcccCCC-cceecCc-cccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccCCEEE
Confidence 699999999999999986431 2222222 112222344678899999999975322 1112222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.++..-.......++.+.+... .....|+++|+||+|+.
T Consensus 74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 74 FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 99777642111112233333333211 11237999999999984
No 112
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.37 E-value=8.8e-12 Score=103.33 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||++++++.... ..+.++ +...........| ..+.+|||||....... ...++ ..+|
T Consensus 12 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~~--~~a~ 80 (199)
T cd04110 12 IGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI-------TSTYY--RGTH 80 (199)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH-------HHHHh--CCCc
Confidence 699999999999999987532 111111 1112222333444 46789999996432211 11122 5789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++.+....+.-..+++.+....+ ..++++|.||+|+.+
T Consensus 81 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~ 124 (199)
T cd04110 81 GVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPE 124 (199)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 99999888753222223345555555432 268899999999853
No 113
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.37 E-value=6.1e-12 Score=103.38 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeE-EEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++++... ..+.+.++..... .....++|. .+.+|||||......... .++ .++|
T Consensus 6 vG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~--~~~d 75 (193)
T cd04118 6 LGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR-------IYY--RGAK 75 (193)
T ss_pred ECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------hhc--CCCC
Confidence 69999999999999998753 2333333322222 223455554 456999999754322111 111 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....+++.+.... .+ .|+++|.||+|+.
T Consensus 76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~--~piilv~nK~Dl~ 118 (193)
T cd04118 76 AAIVCYDLTDSSSFERAKFWVKELQNLE-EH--CKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhcC-CC--CCEEEEEEccccc
Confidence 9999988875321122234556555532 22 7899999999985
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=7e-12 Score=100.43 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+.... ....++.+.........+++ ..+.+|||||..... .....++ ...|+
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~ 82 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY--RSANA 82 (169)
T ss_pred ECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh--cCCCE
Confidence 699999999999999976432 11112222233333445565 457889999964321 1112223 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..++..+......+ .+.++|.||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~ 125 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLA 125 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 999988764221112234555555554433 6789999999985
No 115
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.37 E-value=3.1e-12 Score=105.50 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|.+|||||||+|+|++......... .+.|..........++..+.+|||||..+.. .
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~ 80 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG-------G 80 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH-------H
Confidence 69999999999999996311111110 1223333334456678899999999986421 1
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+..++ ..+|++++|+++.+ ........++..+... + .|+++|+||+|+.
T Consensus 81 ~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~---~--~p~iiv~NK~Dl~ 130 (194)
T cd01891 81 EVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL---G--LKPIVVINKIDRP 130 (194)
T ss_pred HHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc---C--CCEEEEEECCCCC
Confidence 222222 58999999988765 2334444444443322 2 6899999999985
No 116
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.36 E-value=5.5e-12 Score=101.99 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++++... ...+.++. .........++| ..+.+|||||........ ..++ .++|
T Consensus 6 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad 74 (170)
T cd04108 6 VGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA-------STYY--RGAQ 74 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH-------HHHh--cCCC
Confidence 69999999999999998753 22232222 222222334444 568999999975322111 1111 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhh-cCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~-~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++.........+++.+.+. .+.. .++++|.||+|+.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~ 119 (170)
T cd04108 75 AIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcC
Confidence 999998887532233344566655443 2222 4689999999984
No 117
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.36 E-value=7.7e-12 Score=122.38 Aligned_cols=116 Identities=15% Similarity=0.234 Sum_probs=82.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHH-HHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALEL-IKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~-i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|+|... .+++.+++|.+.......+++.++.+|||||..+...... ...+. .+.++....+|
T Consensus 9 vG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD 87 (772)
T PRK09554 9 IGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (772)
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence 69999999999999999865 6788888888877777788889999999999987532110 11111 12334446899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
++++|++.+ .... ...+..++.+. | .|+++|+||+|..+.
T Consensus 88 ~vI~VvDat--~ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 88 LLINVVDAS--NLER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK 127 (772)
T ss_pred EEEEEecCC--cchh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc
Confidence 999995544 3322 33444555443 2 799999999998533
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.36 E-value=7.8e-12 Score=100.68 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|.+.+... ..+.+ |..........++..+.+|||||.... ......++ ..+|+++
T Consensus 5 ~G~~~~GKTsl~~~l~~~~~---~~~~~-t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~a~~ii 71 (167)
T cd04161 5 VGLDNAGKTTLVSALQGEIP---KKVAP-TVGFTPTKLRLDKYEVCIFDLGGGANF-------RGIWVNYY--AEAHGLV 71 (167)
T ss_pred ECCCCCCHHHHHHHHhCCCC---ccccC-cccceEEEEEECCEEEEEEECCCcHHH-------HHHHHHHH--cCCCEEE
Confidence 69999999999999998621 22221 222233445667889999999996421 11222222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||++.++....+.-...+..+.+... ....|+++|.||.|+.
T Consensus 72 ~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 72 FVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 99777653211122333444433211 1137999999999984
No 119
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=6.4e-12 Score=102.50 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+... ...+.++..........+++ ..+.+|||+|..........+ -+++|+
T Consensus 7 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~---------~~~a~~ 75 (178)
T cd04131 7 VGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLC---------YPDSDA 75 (178)
T ss_pred ECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhh---------cCCCCE
Confidence 69999999999999998753 22333332222222334444 467899999975432211111 168999
Q ss_pred EEEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|+++++....+. ...+++.+.+..+ + .++++|.||+|+.
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~ 118 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhh
Confidence 999999986332222 3467777776643 2 6899999999984
No 120
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.36 E-value=5.1e-12 Score=105.62 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+|+|||||+|+|++...+..+. ..+.|.........+++.++.+|||
T Consensus 5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT 84 (208)
T cd04166 5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT 84 (208)
T ss_pred EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence 6999999999999998754322210 0234555555566778999999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++|+|++... .....+......+. ..+. +++++|+||+|+.
T Consensus 85 pG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 85 PGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred CcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence 99742 222222222 58999999977764 24444444444333 2232 4678899999984
No 121
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=1.2e-11 Score=102.66 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|++++.... ..+.++ ..........++ ...+.+|||||....... ...++ .++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~--~~a 74 (201)
T cd04107 6 IGDLGVGKTSIIKRYVHGIFS--QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-------TRVYY--RGA 74 (201)
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------HHHHh--CCC
Confidence 699999999999999987532 112222 112222233333 456789999997432211 11222 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++....+.-..++..+..... .....|+++|+||+|+.
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999888753222222344555544321 12237999999999985
No 122
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=3.8e-12 Score=105.94 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=80.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC--C--CC--ccee--EEEEeeeCCe--EEEEEeCCCCCCCCc-----------C
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF--Q--SE--ALRP--VMVSRSKGGF--TLNIIDTPGLVEAGY-----------V 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~--~--~~--t~~~--~~~~~~~~g~--~v~liDTPG~~~~~~-----------~ 59 (256)
||.||.||||++|.|+...+...+.. . .. |.+. ..+..+-+|+ +++++|||||||.-- .
T Consensus 52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyI 131 (336)
T KOG1547|consen 52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYI 131 (336)
T ss_pred EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHH
Confidence 69999999999999998754332211 1 11 1111 1223344555 679999999998421 1
Q ss_pred cHHHHHHHHHh--------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 60 NYQALELIKGF--------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 60 ~~~~~~~i~~~--------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
++++-+.+++- +.+.+.|++||.++.++..+...|.++++.|.+. .+++-|+.|+|....
T Consensus 132 neQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 132 NEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccccH
Confidence 11222222221 1234689999999999888999999999999998 699999999997543
No 123
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.35 E-value=1.5e-11 Score=98.83 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+||||||++|++.+... ...+.+++.........+++ ..+.+|||||..+.....+.+ + ...|+
T Consensus 7 iG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~~~ 75 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELY-------I--KSGQG 75 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHH-------H--hhCCE
Confidence 69999999999999997753 22233333322223334444 577899999976543222221 1 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....+.+.+.+..... ..|++++.||.|+.+
T Consensus 76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~-~~piiiv~nK~D~~~ 120 (168)
T cd04177 76 FLLVYSVTSEASLNELGELREQVLRIKDSD-NVPMVLVGNKADLED 120 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCC-CCCEEEEEEChhccc
Confidence 999988876332233345556665544321 378999999999853
No 124
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.35 E-value=2.8e-11 Score=100.20 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV------VTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++... .... ...+.|........+.++.+++++||||..+ +..
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~-------~~~ 80 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YIK 80 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-------HHH
Confidence 69999999999999986410 0000 0123344444445566788999999999842 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+...+..+.+. |. .++++++||+|+.
T Consensus 81 ~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~ 131 (195)
T cd01884 81 NMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMV 131 (195)
T ss_pred HHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCC
Confidence 333322 58999999977664 3666777777766554 31 3478999999985
No 125
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.35 E-value=7.9e-12 Score=101.47 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+.++++... ...+.++...........++ ..+.+|||||..+....... ++ .++|+
T Consensus 7 iG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 75 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------SY--PQTDV 75 (174)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------hc--CCCCE
Confidence 69999999999999998643 22333333222222334455 56789999997543222111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.... .+ .|+++|.||+|+.
T Consensus 76 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilvgnK~Dl~ 118 (174)
T cd01871 76 FLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLR 118 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEeeChhhc
Confidence 99999998632 2222234555555543 22 7999999999984
No 126
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.35 E-value=6.1e-12 Score=101.68 Aligned_cols=109 Identities=22% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||++++.+... ...+.+++..........++ ..+.+|||||.......... ++ .++|+
T Consensus 6 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~a~~ 74 (173)
T cd04130 6 VGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL-------CY--PDTDV 74 (173)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc-------cc--CCCcE
Confidence 69999999999999987642 33334443333333344555 46788999998543322111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+.. .+ .|+++|.||+|+.
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~ 117 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIRKHN-PK--APIILVGTQADLR 117 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEeeChhhc
Confidence 99998887633 3333345666665532 22 7899999999985
No 127
>PLN03110 Rab GTPase; Provisional
Probab=99.35 E-value=9.9e-12 Score=104.45 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++++..... ...++...........+++ ..+.||||||... +......++ ..+|+
T Consensus 18 vG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~~~ 87 (216)
T PLN03110 18 IGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY--RGAVG 87 (216)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--CCCCE
Confidence 6999999999999999876421 1111112222223344444 4788999999642 111222222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..++..+.+..+.+ .++++|+||+|+.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~ 130 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLN 130 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcc
Confidence 999988875333333445666666665444 6899999999985
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.35 E-value=4.3e-12 Score=100.87 Aligned_cols=108 Identities=10% Similarity=0.129 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++...... ...+ |.........+.+..+.+|||||..+.. .....++ .++|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~~~ii 71 (158)
T cd04151 5 LGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNTDAII 71 (158)
T ss_pred ECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCCCEEE
Confidence 699999999999999776532 1111 2222233455678899999999985321 1112222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. +......+...+....-. ..|+++|+||+|+.
T Consensus 72 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~ 113 (158)
T cd04151 72 YVVDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCC
Confidence 998776521 111222222222221111 27999999999984
No 129
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.35 E-value=1.2e-11 Score=100.83 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+..+..... ...+.++...........+| .++.+|||+|..........+. .++|+
T Consensus 7 ~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~---------~~a~~ 75 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSY---------RGADV 75 (176)
T ss_pred ECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhc---------CCCcE
Confidence 69999999999999998653 22333333222233344554 4678999999865543332222 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|+++++.. +......++..+.+..+ + .++++|.||+|+.
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~ 118 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhc
Confidence 99999998743 32222457777765533 3 7999999999985
No 130
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.35 E-value=6.9e-12 Score=101.68 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee------------CCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK------------GGFTLNIIDTPGLVEAGYVNYQALELI 67 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~------------~g~~v~liDTPG~~~~~~~~~~~~~~i 67 (256)
+|.+|||||||+|++.+... ...+.++ +.........+ ....+.+|||||... +....
T Consensus 10 vG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~ 80 (180)
T cd04127 10 LGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------FRSLT 80 (180)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------HHHHH
Confidence 69999999999999998653 1222111 11111111222 236788999999532 22122
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhc-CCcccccEEEEEecccCCC
Q 025189 68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTF-GKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~-g~~~~~~~ivv~Tk~D~~~ 124 (256)
..++ .++|++++|+++++..-...-..++..+.... ..+ .|+++|.||+|+.+
T Consensus 81 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~ 134 (180)
T cd04127 81 TAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN--PDIVLCGNKADLED 134 (180)
T ss_pred HHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEeCccchh
Confidence 2222 58999999988875322122234555554432 122 68999999999853
No 131
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.35 E-value=8.1e-12 Score=99.27 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+||||||++|++++....... .+..+.........+++ ..+.+|||||....... ...++ ..+|+
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~--~~~d~ 75 (161)
T cd01863 6 IGDSGVGKSSLLLRFTDDTFDPDL-AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL-------TSSYY--RGAQG 75 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCccc-CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh-------hHHHh--CCCCE
Confidence 699999999999999987542211 11111111112223333 57899999996432211 12222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-.+....++..+.+.... .-.++++|.||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~ 119 (161)
T cd01863 76 VILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccc
Confidence 99998887532112223345555554322 237899999999985
No 132
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.35 E-value=7.3e-12 Score=96.54 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=65.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|++++.... ......+........... .+..+++|||||..+..... ..++ ...|+
T Consensus 2 iG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~~ 71 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGADG 71 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCCE
Confidence 699999999999999997652 111112212222222222 26788999999986543211 1111 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHH--HHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQII--KAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~--~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|++++... ...+.... ..+... .....++++|+||+|+..
T Consensus 72 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 72 IILVYDVTDRE-SFENVKEWLLLILINK--EGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEECcCHH-HHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccc
Confidence 99997777421 11111111 111222 223489999999999853
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=1.4e-11 Score=96.17 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|+|++.. +..+..++.+..........++ ..+.+|||||..+........ . ...+.
T Consensus 7 ~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~------~~~~~ 76 (161)
T TIGR00231 7 VGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLY---Y------RAVES 76 (161)
T ss_pred ECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHH---H------hhhhE
Confidence 6999999999999999987 4555555555555555566777 778999999964432211111 1 24455
Q ss_pred EEEEEeCCCC--CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~--r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++++++... .+..........+...... -.|+++|+||+|+.
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence 5555443321 1122222344444444322 27899999999985
No 134
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.35 E-value=4.2e-12 Score=109.59 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=88.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE-EEEEeCCCCCCCCcCcH----HHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LNIIDTPGLVEAGYVNY----QALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~-v~liDTPG~~~~~~~~~----~~~~~i~~~l~~~~ 75 (256)
||-+++|||||+|+|...+. .++.++.||..+......+++.. ++|.|.||+.+..+.++ ++++.|. +
T Consensus 202 VG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE------R 274 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE------R 274 (366)
T ss_pred ecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH------h
Confidence 68999999999999999876 78889999999988877777664 99999999999876654 6777775 7
Q ss_pred CcEEEEEEeCCCC---CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~---r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++.++||++++.. ...+.-..+..++...-..-..++.++|.||+|..
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 8999999888865 22233333344443332222347899999999983
No 135
>PTZ00369 Ras-like protein; Provisional
Probab=99.35 E-value=1e-11 Score=102.08 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+.... ..+.++..........+++ ..+.+|||||..+.......+ + .+.|+
T Consensus 11 iG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~-------~--~~~d~ 79 (189)
T PTZ00369 11 VGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQY-------M--RTGQG 79 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHH-------h--hcCCE
Confidence 699999999999999987532 2222332222222333444 457789999986543222111 1 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+.+.+.+..... ..|+++|.||+|+.
T Consensus 80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 80 FLCVYSITSRSSFEEIASFREQILRVKDKD-RVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccc
Confidence 999988876332233445556665543321 26899999999974
No 136
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.35 E-value=8.5e-12 Score=100.52 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|++.+.... ..+.++...........++. .+.+|||||..+.......+ -.+.|+
T Consensus 6 ~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---------~~~~~~ 74 (174)
T cd04135 6 VGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS---------YPMTDV 74 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccccc---------CCCCCE
Confidence 699999999999999987632 22222222222223344554 46799999986543222111 157899
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.+ +......+++.+.+. ..+ .|+++|.||+|+.
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~ 117 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhh
Confidence 99998887633 322333455556544 333 7999999999984
No 137
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.34 E-value=1.5e-11 Score=103.78 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++++++.... . .. .|.....+...+....+.+|||||..........+ + .++|+++
T Consensus 6 vG~~~vGKTSLi~r~~~~~f~--~-~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~-------~--~~ad~~I 72 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERRFK--D-TV-STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMY-------C--RGAAAVI 72 (220)
T ss_pred ECCCCCcHHHHHHHHhcCCCC--C-CC-CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHH-------h--ccCCEEE
Confidence 699999999999999987642 1 11 22222223334556788999999975432221111 1 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+|+++++....+.-...+..+.+....+ .++++|.||+|+.+
T Consensus 73 lV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 73 LTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 9999886322222223444444443333 68999999999853
No 138
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.34 E-value=1.1e-11 Score=99.89 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++++... .....++.+.........+++ ..+.+|||||..+.. .. ....++ ..+|+
T Consensus 8 vG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~---~~~~~~--~~~d~ 78 (170)
T cd04115 8 IGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---KS---MVQHYY--RNVHA 78 (170)
T ss_pred ECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---Hh---hHHHhh--cCCCE
Confidence 69999999999999998653 111111111112222334444 578999999964321 01 112222 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........+++.+...... .-.|+++|.||+|+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 79 VVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLR 122 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence 99998887633223334455555544321 237999999999985
No 139
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.34 E-value=7.9e-12 Score=103.47 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ..+..++.........+++ ..+.+|||||......... . ++ ..+|+
T Consensus 5 vG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----~---~~--~~ad~ 73 (198)
T cd04147 5 MGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK----L---SI--QNSDA 73 (198)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHH----H---Hh--hcCCE
Confidence 699999999999999987632 2233333333333445566 5788999999754321111 1 11 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-.+....++..+.+.... ...|+++|+||+|+.
T Consensus 74 vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~ 117 (198)
T cd04147 74 FALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccc
Confidence 99998877522122233444555554332 237999999999985
No 140
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.34 E-value=1.3e-11 Score=101.74 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|..|||||||++++.+... ...+.+ .+.........+++ ..+.+|||||...... ....+. .++|
T Consensus 12 iG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------l~~~~~--~~ad 80 (189)
T cd04121 12 VGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-------IFRSYS--RGAQ 80 (189)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHh--cCCC
Confidence 69999999999999997642 122221 12222223345565 5678999999854321 111222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+|+++++..-.+.-..+++.+.+... + .|++||.||+|+.
T Consensus 81 ~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~ 123 (189)
T cd04121 81 GIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccch
Confidence 99999999864423333567777766543 3 7999999999984
No 141
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.34 E-value=6.4e-12 Score=102.67 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++++.... ..+.++............ ...+.+|||||..+... ....++ .++|
T Consensus 6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~ad 74 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------LRPLSY--PDVD 74 (187)
T ss_pred ECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-------HHHHhC--CCCC
Confidence 699999999999999987632 222222221112222232 34678999999643211 111111 5899
Q ss_pred EEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++.. +......++..+... ..+ .|+++|.||+|+.
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~ 118 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhh
Confidence 999998887632 222222344444433 222 7999999999984
No 142
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.33 E-value=1.7e-12 Score=98.32 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT---VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~---~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+++|++..... .......+..........+...+.+||++|........... + ..+|
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------~~~d 75 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------KKAD 75 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------HHSC
T ss_pred ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------hcCc
Confidence 5999999999999999886531 11122222222222233344458899999985433222222 2 3799
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
++++|+++++...-+.-.++++.+...-+.....|+++|.||.|
T Consensus 76 ~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 76 AVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999888753211121234444544433222379999999987
No 143
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.33 E-value=6.4e-12 Score=101.41 Aligned_cols=108 Identities=11% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++++...... . ..++ ...........+..+.+|||||..... .....++ .++|+++
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~--~-~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~a~~ii 81 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQSV--T-TIPT-VGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYY--TGTQGLI 81 (168)
T ss_pred ECcCCCCHHHHHHHHccCCCc--c-ccCC-cccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--ccCCEEE
Confidence 699999999999999875431 2 1112 112222344577899999999984321 1111222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||+++++.. +.+....+.+.+.+....+ .|+++|+||+|+.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~ 123 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRD--ALLLVFANKQDLP 123 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcC--CcEEEEEECcCCc
Confidence 998877532 3222222222222211122 6899999999984
No 144
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.33 E-value=1.3e-11 Score=99.98 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|+|||||+|++.+...... ..|.........+++..+.+|||||..... .....++ .++|+++
T Consensus 21 ~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~~d~vi 87 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYY--TNTDAVI 87 (174)
T ss_pred ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHh--hcCCEEE
Confidence 69999999999999987654221 122223334556678899999999975321 1111222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.++..-.......+..+.+.-+ ....|+++++||+|+.
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 99777642111111222222221111 0127999999999984
No 145
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.33 E-value=8.5e-12 Score=97.97 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|.+.... ....+ |..........++..+.+|||||.... ......++ ..+|+++
T Consensus 5 ~G~~~~GKssl~~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~ii 72 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQFS-EDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRF-------RSMWERYC--RGVNAIV 72 (159)
T ss_pred EcCCCCCHHHHHHHHccCCCC-cCccC--CCCcceEEEEECCEEEEEEECCCCHhH-------HHHHHHHH--hcCCEEE
Confidence 699999999999999997542 11112 222222334566788999999997421 12222233 5789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+..... ....|+++|+||+|+.
T Consensus 73 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 73 YVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 99776642111111122222222111 0126899999999974
No 146
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32 E-value=8.4e-12 Score=99.07 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|++.+...... . + |.......... .+..+.+|||||..... .....++ .++|++
T Consensus 5 ~G~~~~GKTsl~~~~~~~~~~~~--~-~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~--~~~~~i 71 (160)
T cd04156 5 LGLDSAGKSTLLYKLKHAELVTT--I-P-TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYL--ENTDGL 71 (160)
T ss_pred EcCCCCCHHHHHHHHhcCCcccc--c-C-ccCcceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHh--ccCCEE
Confidence 69999999999999999865322 1 1 11111222223 34689999999974321 1111222 578999
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.++.. +......+.+.+...... ..|+++|+||+|+.
T Consensus 72 v~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~ 114 (160)
T cd04156 72 VYVVDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLP 114 (160)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccc
Confidence 9997776421 222222222222221111 27999999999984
No 147
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.32 E-value=1e-11 Score=99.27 Aligned_cols=108 Identities=9% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++++...... + +.++. ........++...+.+|||||.... ......++ .++|+++
T Consensus 6 ~G~~~~GKTsli~~l~~~~~~--~-~~pt~-g~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~~i 72 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGEIV--T-TIPTI-GFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QNTQGLI 72 (159)
T ss_pred ECCCCCCHHHHHHHHhcCCCc--c-cCCCC-CcceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence 699999999999999655431 2 22221 1222234567788999999998432 11112222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||+++++.. +......+.+.+...... -.|++++.||.|+.
T Consensus 73 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 114 (159)
T cd04150 73 FVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP 114 (159)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence 998876522 322222222222221111 26899999999984
No 148
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.32 E-value=1.4e-11 Score=99.00 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++++.+... ...+.++. ..........+..+.+|||||....... ....+ .++|+++
T Consensus 5 vG~~~vGKTsli~~~~~~~~--~~~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~~~~---~~~~~------~~ad~ii 72 (164)
T cd04162 5 LGLDGAGKTSLLHSLSSERS--LESVVPTT-GFNSVAIPTQDAIMELLEIGGSQNLRKY---WKRYL------SGSQGLI 72 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCC--cccccccC-CcceEEEeeCCeEEEEEECCCCcchhHH---HHHHH------hhCCEEE
Confidence 69999999999999998753 12222221 1122334566789999999997643211 11122 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||++.++..-....+..+..+.... ...|+++|.||.|+.
T Consensus 73 ~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~ 112 (164)
T cd04162 73 FVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLP 112 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence 9987765221112223333332221 237999999999984
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.32 E-value=1.7e-11 Score=99.56 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++.+..... .. ..+ |.........+.+..+.+|||||..... .....++ .++|+++
T Consensus 19 ~G~~~~GKTsL~~~~~~~~~--~~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~ad~ii 85 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGES--VT-TIP-TIGFNVETVTYKNISFTVWDVGGQDKIR-------PLWRHYY--TNTQGLI 85 (175)
T ss_pred EcCCCCCHHHHHHHHhcCCC--CC-cCC-ccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--CCCCEEE
Confidence 69999999999999965432 11 222 2222223445678899999999974321 1122222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHH-HhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAV-TGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l-~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. +.+. ...+..+ .+.... ..|++||+||+|+.
T Consensus 86 ~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~ 127 (175)
T smart00177 86 FVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP 127 (175)
T ss_pred EEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence 998877522 2222 2222222 221112 26899999999984
No 150
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.32 E-value=2.6e-11 Score=96.29 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++..........++ ..+.+|||||..+... ....++ ...|+
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~--~~~~~ 74 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-------IRDNYH--RSGEG 74 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-------HHHHHh--hcCCE
Confidence 69999999999999998653 22333333332222333443 5688999999754321 111222 47799
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++......-..++..+..... ....|+++|+||+|+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~ 118 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccc
Confidence 9999877653211222344444444422 1238999999999985
No 151
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.32 E-value=1.5e-11 Score=100.71 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+... ...+.++..........+++ ..+.+|||+|......... .++ .++|+
T Consensus 11 vGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~-------~~~--~~ad~ 79 (182)
T cd04172 11 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA 79 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhh-------hhc--CCCCE
Confidence 69999999999999998653 22333332222222334444 4678999999743321111 111 68999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+.+..+ + .++++|.||+|+.
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 122 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence 99999998633 22222467777776543 2 7899999999984
No 152
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.1e-11 Score=109.90 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=78.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC------CCCcceeEE--EEeeeCCe--EEEEEeCCCCCCCC----cCc--HH-H
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF------QSEALRPVM--VSRSKGGF--TLNIIDTPGLVEAG----YVN--YQ-A 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~------~~~t~~~~~--~~~~~~g~--~v~liDTPG~~~~~----~~~--~~-~ 63 (256)
+|.+|.||||+||+||+........+ ...|..... ...+-+|+ +++|+||||+||.- ... .. +
T Consensus 27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi 106 (366)
T KOG2655|consen 27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYI 106 (366)
T ss_pred ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHH
Confidence 69999999999999999854221111 111222222 22233455 56899999999941 010 11 1
Q ss_pred HHHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 64 LELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 64 ~~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
-+...+++ .+.++|++||.++..+..+...|..+++.+.+. .++|-|+.|+|...
T Consensus 107 ~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 107 DSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred HHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 12233333 234799999998888866999999999988877 69999999999853
No 153
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.31 E-value=1.6e-11 Score=98.93 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++++.+.... ..+.++..........+++. .+.+|||||..+....... . ..+.|+
T Consensus 7 iG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~--~~~~d~ 75 (175)
T cd01870 7 VGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S--YPDTDV 75 (175)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcccc-------c--cCCCCE
Confidence 699999999999999986531 22222222222223344443 6789999997543221111 1 158899
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+..+ + .|+++|.||+|+.
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 118 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLR 118 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcc
Confidence 99998888632 22222335555554432 2 7999999999985
No 154
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.31 E-value=3.3e-11 Score=99.23 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCC------cccccCCCCCcceeEEEEeeeC--------------CeEEEEEeCCCCCCCCcCc
Q 025189 1 MGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKG--------------GFTLNIIDTPGLVEAGYVN 60 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~v~liDTPG~~~~~~~~ 60 (256)
+|.+|+|||||+|+|++.. ....+...++|.........+. +..+++|||||..+
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----- 80 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS----- 80 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-----
Confidence 5999999999999999731 1111111233433333333332 67899999999731
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+...+... ...+|++++|++... ..+..+...+... +..+ .++++|+||+|+.
T Consensus 81 --~~~~~~~~--~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 --LIRTIIGG--AQIIDLMLLVVDATK-GIQTQTAECLVIG-EILC----KKLIVVLNKIDLI 133 (192)
T ss_pred --HHHHHHHH--HhhCCEEEEEEECCC-CccHHHHHHHHHH-HHcC----CCEEEEEECcccC
Confidence 22222111 147899999977664 2334443333322 2222 6899999999985
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.31 E-value=2e-11 Score=99.02 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++..........++ ..+.+|||||..+...... .++ ...|+
T Consensus 7 ~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~--~~~~~ 75 (180)
T cd04137 7 LGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQ-------KYS--IGIHG 75 (180)
T ss_pred ECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHH-------HHH--hhCCE
Confidence 69999999999999998753 22223333222233334444 4578999999764321111 111 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+.+..+. ...|+++|.||+|+.
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhh
Confidence 99998887632222334444555554332 236899999999985
No 156
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.31 E-value=1.5e-11 Score=100.61 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+||||||++|++.+.... ...++.+......... ..+..+.+|||||..... .....++ ..+|
T Consensus 9 vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~--~~~d 77 (183)
T cd04152 9 LGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYT--RCTD 77 (183)
T ss_pred ECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHh--ccCC
Confidence 699999999999999886532 2222222122222222 246789999999974221 1112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+.-...+..+.+.... ...|+++|+||+|+.
T Consensus 78 ~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 78 GIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 999998776421111112233333333221 137999999999984
No 157
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.31 E-value=1.8e-11 Score=98.29 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....+..+.........+++ ..+.+|||||..... .....++ ..+|+
T Consensus 11 vG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~--~~~d~ 80 (170)
T cd04116 11 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR-------SLRTPFY--RGSDC 80 (170)
T ss_pred ECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhHHHHh--cCCCE
Confidence 699999999999999986532 11112222222222334444 466889999964221 1112222 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+...+.+.... ....|+++|+||+|+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999888633122233455555444321 1136899999999984
No 158
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.30 E-value=1.9e-11 Score=100.00 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++.+...... . ..+ |..........++..+.+|||||..... .....++ .++|+++
T Consensus 23 vG~~~vGKTsli~~~~~~~~~--~-~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~ad~iI 89 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGEVV--T-TIP-TIGFNVETVEYKNLKFTMWDVGGQDKLR-------PLWRHYY--QNTNGLI 89 (182)
T ss_pred EcCCCCCHHHHHHHHhcCCcc--c-cCC-ccccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHh--cCCCEEE
Confidence 699999999999999754331 2 222 2222233455678899999999974321 1112222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. +.... +.+.+..... ...|+++|+||.|+.
T Consensus 90 ~v~D~t~~~s~~~~~----~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 90 FVVDSNDRERIGDAR----EELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEeCCCHHHHHHHH----HHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 998876522 22222 2333332211 126899999999984
No 159
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.30 E-value=1.4e-11 Score=99.74 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCcceeEEEEe-----eeCCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV-----NSF---------QSEALRPVMVSR-----SKGGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~-----~~~---------~~~t~~~~~~~~-----~~~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|.+|||||||+|+|++...+.. ..+ .+.+........ ...+..+.+|||||..+..
T Consensus 6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 81 (179)
T cd01890 6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS---- 81 (179)
T ss_pred EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH----
Confidence 69999999999999997532110 000 012222222222 2245678899999986532
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+..++ .++|++++|++... ..+..+...+..+.. .+ .++++|+||+|+.
T Consensus 82 ---~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 ---YEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---NN--LEIIPVINKIDLP 132 (179)
T ss_pred ---HHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---cC--CCEEEEEECCCCC
Confidence 1222222 47999999987764 233334333333322 22 6899999999984
No 160
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.30 E-value=2e-11 Score=103.05 Aligned_cols=111 Identities=16% Similarity=0.059 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC-CC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK-TI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~-~~ 76 (256)
+|.+|||||||++++++.... ...+.++.. ........+ ....+.+|||||.. . .... .++ . ++
T Consensus 6 vG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~-----~~~~--~~~--~~~a 73 (221)
T cd04148 6 LGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M-----WTED--SCM--QYQG 73 (221)
T ss_pred ECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--h-----HHHh--HHh--hcCC
Confidence 699999999999999866432 122222211 222223334 34678999999986 1 1111 111 4 79
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
|++++|+++++....+...+++..+.+... ....|+++|.||+|+.+
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLAR 120 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccc
Confidence 999999988863322223455565655421 12379999999999853
No 161
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.30 E-value=7.3e-11 Score=95.24 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||++++++.... +..+.+++. ........++| ..+.+|||+|..........+. .++|
T Consensus 10 vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~---------~~~d 79 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL---------AACD 79 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh---------hcCC
Confidence 699999999999999997642 133333322 22223344555 5678999999865533332222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+|+++++. .....+.+.+... ......|+++|+||+|+.
T Consensus 80 ~~llv~d~~~~---~s~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 80 VACLVYDSSDP---KSFSYCAEVYKKY-FMLGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEEEeCCCH---HHHHHHHHHHHHh-ccCCCCeEEEEEEccccc
Confidence 99999877642 1112222222222 111137999999999984
No 162
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-11 Score=105.97 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-----HHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-----ELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-----~~i~~~l~~~~ 75 (256)
||.++||||||.|.++|..++.++....||+........-+..++.++||||+-.........+ +.... ....
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~--a~q~ 155 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRD--AAQN 155 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHH--HHhh
Confidence 6999999999999999999999998877887777777777888999999999987653322111 11111 2257
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++++++.+.| .....+.+..+.+... .|.++|.||.|..
T Consensus 156 AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~----ips~lvmnkid~~ 198 (379)
T KOG1423|consen 156 ADCVVVVVDASATR-TPLHPRVLHMLEEYSK----IPSILVMNKIDKL 198 (379)
T ss_pred CCEEEEEEeccCCc-CccChHHHHHHHHHhc----CCceeeccchhcc
Confidence 99999998887645 2333455555555432 5889999999875
No 163
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.29 E-value=2.2e-11 Score=100.28 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++.+..... ...+.++..........+++ ..+.+|||||.......... +. .++|+
T Consensus 9 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~-------~~--~~a~~ 77 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL-------SY--PQTNV 77 (191)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------hc--cCCCE
Confidence 69999999999999997643 12222222222222233444 46789999998543221111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+.+.+.+.. .+ .|+++|.||.|+.
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~ 120 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLR 120 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhh
Confidence 99999998633 3222223555555443 23 7999999999984
No 164
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=2.5e-11 Score=103.06 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
||.+|||||||++.+.+... ...+.++..........+++ ..+.||||+|.......... ++ .++|+
T Consensus 19 vGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~-------~~--~~ad~ 87 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPL-------CY--SDSDA 87 (232)
T ss_pred ECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHH-------Hc--CCCcE
Confidence 69999999999999998753 22233332222222234444 56789999997432211111 11 68999
Q ss_pred EEEEEeCCCCCCCH-HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+ ....+++.+.+..+ + .++++|.||+|+.
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 130 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR 130 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence 99999998633222 23456677776543 2 6899999999984
No 165
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.29 E-value=2.3e-11 Score=99.40 Aligned_cols=107 Identities=9% Similarity=0.089 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||++.+...... . ..+ |.........+++..+.+|||||... +......++ .++|+++
T Consensus 23 vG~~~~GKTsl~~~l~~~~~~--~-~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~--~~a~~iI 89 (181)
T PLN00223 23 VGLDAAGKTTILYKLKLGEIV--T-TIP-TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF--QNTQGLI 89 (181)
T ss_pred ECCCCCCHHHHHHHHccCCCc--c-ccC-CcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--ccCCEEE
Confidence 699999999999999865432 2 112 22222334566788999999999632 111222222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. .-....+.+.+.+... -..|++||+||.|+.
T Consensus 90 ~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 90 FVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 998876521 1112223333332211 127899999999984
No 166
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.29 E-value=1.3e-11 Score=101.19 Aligned_cols=108 Identities=14% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+..... + ..|..+......+++..+.+|||||.... ......++ .++|+++
T Consensus 25 lG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~ii 91 (190)
T cd00879 25 LGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF--PEVDGIV 91 (190)
T ss_pred ECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--ccCCEEE
Confidence 6999999999999999876421 1 12333344556678899999999996421 11122222 5789999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++.+.. +. .....+..+.+.. .....|+++|+||+|+.
T Consensus 92 lV~D~~~~~s~~-~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 92 FLVDAADPERFQ-ESKEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred EEEECCcHHHHH-HHHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 997776421 21 1222333322211 11237999999999984
No 167
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.29 E-value=2.2e-11 Score=102.75 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
||.+|||||||++++.+... ...+.++..........+++ ..+.+|||+|.......... + -+++|+
T Consensus 7 vGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~-------~--~~~~d~ 75 (222)
T cd04173 7 VGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPL-------A--YPDSDA 75 (222)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHH-------h--ccCCCE
Confidence 69999999999999998653 22333332222222334544 46788999997533211111 1 169999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|+++++.. +......+...+.+.. .+ .|+++|.||+|+.
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~ 118 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence 99999988632 2222233444444332 33 6999999999984
No 168
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.29 E-value=2.1e-11 Score=102.79 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+++++.... ...+.++. .......... ....+.+|||||..........+ . .+.|
T Consensus 19 vG~~gvGKTsli~~~~~~~f--~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~~ 87 (219)
T PLN03071 19 VGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-------Y--IHGQ 87 (219)
T ss_pred ECcCCCCHHHHHHHHhhCCC--CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH-------c--cccc
Confidence 69999999999999876543 11122221 1111122222 34688999999986543221111 1 5889
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+|+++++.........+++.+.+.. .+ .++++|.||+|+.
T Consensus 88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~ 130 (219)
T PLN03071 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEEchhhh
Confidence 9999988886332233345666666553 23 7999999999984
No 169
>CHL00071 tufA elongation factor Tu
Probab=99.29 E-value=8.9e-11 Score=107.81 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+|+|++......+ ...+.|........+.++.+++++||||.. ++..
T Consensus 18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-------~~~~ 90 (409)
T CHL00071 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK 90 (409)
T ss_pred ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-------HHHH
Confidence 599999999999999975221100 012333333333445677889999999963 3333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+...+..+... |. +++++++||+|+.
T Consensus 91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~ 141 (409)
T CHL00071 91 NMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCC
Confidence 333333 47999999977664 3666777777666544 31 3478999999985
No 170
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2e-11 Score=98.37 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+-.+...... ....++...........+++ .++.||||.|.......-..|. +++++
T Consensus 11 LG~~~VGKSSlV~Rfvk~~F~-e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy---------RgA~A 80 (200)
T KOG0092|consen 11 LGDSGVGKSSLVLRFVKDQFH-ENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY---------RGANA 80 (200)
T ss_pred ECCCCCCchhhhhhhhhCccc-cccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee---------cCCcE
Confidence 699999999999887765432 11112222233334445555 5677999999987655544444 69999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchh
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 131 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~ 131 (256)
.|+|+++++......-+.+++.|++..+++ .-+.+|.||+|+.+.+...++
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFE 131 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHH
Confidence 999999997554455677888888877654 456679999999764554444
No 171
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.28 E-value=2.6e-11 Score=100.84 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||++++++... ...+.++. .........++ ...+.||||||.......... ++ .++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~-------~~--~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG-------YY--IQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH-------Hh--cCCC
Confidence 79999999999999997542 12222221 12222222333 467899999998653322221 11 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++..-...-..+++.+.+... + .|+++|.||+|+.
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~ 112 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence 99999988863322333456676766542 2 7999999999984
No 172
>PLN03108 Rab family protein; Provisional
Probab=99.28 E-value=4.3e-11 Score=100.12 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|.+++........ ++...........+++ ..+.+|||||...... ....++ ..+|+
T Consensus 12 vG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------~~~~~~--~~ad~ 81 (210)
T PLN03108 12 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------ITRSYY--RGAAG 81 (210)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHh--ccCCE
Confidence 6999999999999999875422211 1111111122334444 4578999999643211 111122 47999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+....... .++++|.||+|+.
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~ 124 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCc
Confidence 999988875332222334555555544333 7899999999985
No 173
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.28 E-value=3.6e-11 Score=100.72 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|.+++......+. ++.+.........+ ++ ..+.+|||||..... .....++ ..+|
T Consensus 8 vG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~d 77 (211)
T cd04111 8 IGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY--RNSV 77 (211)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh--cCCc
Confidence 6999999999999999876432221 11112222222233 23 478899999964321 1111222 5789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++++....+.-..+++.+.+..... ..++++|.||+|+.+
T Consensus 78 ~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~ 123 (211)
T cd04111 78 GVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLES 123 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEcccccc
Confidence 9999998876322223344556555554322 256789999999853
No 174
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.27 E-value=4e-11 Score=96.47 Aligned_cols=108 Identities=14% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|.+....... .|..........++..+.+|||||... +...+..++ .++|+++
T Consensus 20 ~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~--~~~~~ii 86 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF--ENTDCLI 86 (173)
T ss_pred EccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--cCCCEEE
Confidence 699999999999999997542211 122222334556788999999999742 112222222 5889999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++.... +......+...+...... -.|+++++||+|+.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 128 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLA 128 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCc
Confidence 997776421 211122222222221111 27999999999984
No 175
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.4e-11 Score=97.34 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||-|.-.+.+... ..+-..+...+......+++|. ++.||||.|..........|. +++|.
T Consensus 15 iGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syY---------R~ahG 84 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG 84 (205)
T ss_pred ECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhc---------cCCCe
Confidence 69999999999999988753 2222222333444555666665 578999999854432222222 69999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
|++|++++..+......++++.+.+...++ .+.++|.||+|+.+...
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV 131 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee
Confidence 999999998666677788999999988776 68999999999854333
No 176
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.26 E-value=6.3e-11 Score=98.64 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeee-------CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSK-------GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 72 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~-------~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~ 72 (256)
+|.+|||||||++.+.+.... ....++.. ........+ ....+.+|||+|...... ....++
T Consensus 6 vGd~gVGKTSLi~~~~~~~f~--~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~-------l~~~~y- 75 (202)
T cd04102 6 VGDSGVGKSSLVHLICKNQVL--GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS-------TRAVFY- 75 (202)
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH-------HHHHHh-
Confidence 699999999999999987532 22222211 111112222 224678999999854321 111122
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcC-----------------CcccccEEEEEecccCC
Q 025189 73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG-----------------KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g-----------------~~~~~~~ivv~Tk~D~~ 123 (256)
.++|++++|+++++....+.-..+++.+...-+ ..-..|+++|.||+|+.
T Consensus 76 -r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 76 -NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred -CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 689999999999874333334566666654311 11136999999999985
No 177
>COG2262 HflX GTPases [General function prediction only]
Probab=99.26 E-value=5.3e-11 Score=106.27 Aligned_cols=118 Identities=22% Similarity=0.232 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (256)
+|-|++|||||+|+|+|..++ +.+.-..|-.+......+. |+.+.+-||.||.+. .+....+..+..| ....+|+
T Consensus 198 vGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFksTLEE~~~aDl 274 (411)
T COG2262 198 VGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKSTLEEVKEADL 274 (411)
T ss_pred EeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHHHHHHhhcCCE
Confidence 588999999999999998764 3333345566665566665 799999999999863 3334444444433 2258999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|.|++.++....+......+.|.++-..+ .|+++|+||.|..
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~ 317 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLL 317 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEeccccc
Confidence 999977766433333344445555553334 8999999999975
No 178
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.24 E-value=5.5e-11 Score=101.40 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccc--cc---------CC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT--VN---------SF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~--~~---------~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..|+|||||+|+|+....+. .+ ++ .+.|.........+++.++.+|||||..+.. ...
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~---~~~ 81 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI---AEV 81 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH---HHH
Confidence 5999999999999998642211 11 00 0112223344557789999999999997532 122
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++++|++... ........+++.+.+. + .|.++++||+|+.
T Consensus 82 ~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~ 129 (237)
T cd04168 82 ERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-N----IPTIIFVNKIDRA 129 (237)
T ss_pred HHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccc
Confidence 2222 47899999977765 3555556666666543 2 7899999999984
No 179
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.24 E-value=4.4e-11 Score=103.86 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc--cc---cc------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV--VT---VN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~--~~---~~------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+|+|||||+|+|+...- .. +. ...+.|........++++.++++|||||..+..
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~------ 78 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT------ 78 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH------
Confidence 69999999999999974211 01 11 011334444556677889999999999986421
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+..++ ..+|++++|++... .....+..+++.+.+.- +|.++++||+|+.
T Consensus 79 -~~~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~ 129 (270)
T cd01886 79 -IEVERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT 129 (270)
T ss_pred -HHHHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 1222222 47899999977654 35566667777665442 7889999999984
No 180
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.23 E-value=7.7e-11 Score=96.44 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||++++++... ...+.++. ..........+| ..+.+|||+|...... ....++ .++|
T Consensus 6 lG~~~vGKTsLi~~~~~~~f--~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~--~~a~ 74 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-------MLPLVC--NDAV 74 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-------hhHHHC--cCCC
Confidence 69999999999999988753 22232222 122223344555 4678999999754321 111111 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+.-..+++.+.+..... .+ ++|.||+|+.
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 9999988876322222335666665543322 34 6889999985
No 181
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.23 E-value=1.1e-10 Score=95.65 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|+|||||+|.+...... ....++...........++ ..+.+|||||.......... .+ ..+|+
T Consensus 7 vG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---~~------~~a~~ 75 (187)
T cd04129 7 VGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---SY------SKAHV 75 (187)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---hc------CCCCE
Confidence 699999999999999854321 1222222222222334444 35789999997654322211 11 57899
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+.+++.. +.+....+++.+.+..+. .|+++|.||+|+.
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 99999888643 222223466666665432 7999999999984
No 182
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.22 E-value=1.3e-10 Score=97.38 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc---------cCC---------CCCcceeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV---------NSF---------QSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~---------~~~---------~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~ 57 (256)
+|..|+|||||+++|++...... +.+ .+.+.........+ .+..+.+|||||..+..
T Consensus 6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~ 85 (213)
T cd04167 6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM 85 (213)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence 69999999999999997532211 000 01111111111211 24678999999987532
Q ss_pred cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 58 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 58 ~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
......+ ..+|++++|++... ........+++.+.. .+ .++++|+||+|+.
T Consensus 86 ---~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 86 ---DEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred ---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 1222222 48899999977664 233444444444332 12 7899999999985
No 183
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.22 E-value=4.1e-11 Score=95.29 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|..|||||||++++.+... ...+.++. .+........++. .+.+|||+|..... ...... + .+.|
T Consensus 5 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~~~---~--~~~~ 73 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGEF--PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD----SLRDIF---Y--RNSD 73 (162)
T ss_dssp EESTTSSHHHHHHHHHHSST--TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH----HHHHHH---H--TTES
T ss_pred ECCCCCCHHHHHHHHHhhcc--cccccccccccccccccccccccccccccccccccccc----cccccc---c--cccc
Confidence 59999999999999998753 22222222 3334444555554 57899999964221 111111 1 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++++|+++++..-.+.-..+++.+....+.+ .|+++|.||+|+.+
T Consensus 74 ~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 74 AIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSD 118 (162)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccc--ccceeeeccccccc
Confidence 9999999987443334457777777777633 68999999999853
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.20 E-value=1.3e-10 Score=113.47 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+++|||||+++|.+..+. .+...+.|.....+...+++..++||||||..+.... ..+.. ..+|+++
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m-------~~rga--~~aDiaI 365 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAM-------RARGA--QVTDIVV 365 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchhH-------HHhhh--hhCCEEE
Confidence 699999999999999987653 3333445555555667778899999999998654211 11111 4789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.++. ........+...... ..|++|++||+|+.
T Consensus 366 LVVdAddG-v~~qT~e~i~~a~~~-----~vPiIVviNKiDl~ 402 (787)
T PRK05306 366 LVVAADDG-VMPQTIEAINHAKAA-----GVPIIVAINKIDKP 402 (787)
T ss_pred EEEECCCC-CCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence 99888763 334444444433322 27899999999984
No 185
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.19 E-value=1.8e-10 Score=96.00 Aligned_cols=111 Identities=12% Similarity=0.163 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee--eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC-c
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI-D 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~-d 77 (256)
+|.+|||||||++.|.+.... ...++++......... ..+..+.+|||||.... .......+ ... +
T Consensus 6 ~G~~~sGKTsL~~~l~~~~~~--~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~~~~~~------~~~~~ 74 (203)
T cd04105 6 LGPSDSGKTALFTKLTTGKYR--STVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDKLLETL------KNSAK 74 (203)
T ss_pred EcCCCCCHHHHHHHHhcCCCC--CccCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHHHHHHH------hccCC
Confidence 699999999999999987532 1122221111111111 23678999999997632 11222222 344 9
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhc----CCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~----g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++||++..+. ........+.+...+ ......|+++|.||+|+..
T Consensus 75 ~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 75 GIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99999776642 122222222222211 1111279999999999853
No 186
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=100.80 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=86.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~ 75 (256)
||-+++|||||+|++...+. .+.+++.||..+....... .+..+++-|.||+.+..+. ..+.+++|. +
T Consensus 165 VG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE------R 237 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE------R 237 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH------h
Confidence 69999999999999999875 7889999999888766664 5667999999999997543 457888886 5
Q ss_pred CcEEEEEEeCCCCCC---CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRV---DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~---~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+.++++|++++...- .++-..+..+|.+.-..=.-++.+||+||+|..
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 678999988774321 222234445555543332348999999999963
No 187
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.18 E-value=4.8e-10 Score=94.64 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeC----------CeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------GFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------g~~v~liDTPG~~~ 55 (256)
+|..++|||||+++|+.......... .+.|.........+. +..+.+|||||..+
T Consensus 6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~ 85 (222)
T cd01885 6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD 85 (222)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence 58999999999999986432100000 011211111122222 67889999999976
Q ss_pred CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
... .....+ ..+|++++|+++.. ........+++...+. + .++++|+||+|+.
T Consensus 86 f~~---~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 86 FSS---EVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred cHH---HHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 321 222222 48999999987765 3455555555544432 2 6899999999974
No 188
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.17 E-value=1.2e-10 Score=100.94 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+|+|||||+|+|++.... ..+.. ...+.........+++..+++|||||..+.
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f------- 77 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF------- 77 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH-------
Confidence 699999999999999864211 11110 011222333455678899999999998532
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+..++ ..+|++++|++.+. ........+++.+... + .|.++++||+|..
T Consensus 78 ~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~ 129 (268)
T cd04170 78 VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-G----IPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCccC
Confidence 11222222 47899999977765 2344445555554432 2 6899999999974
No 189
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.16 E-value=4.8e-11 Score=108.44 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=91.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHH-HhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIK-GFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~-~~l~~~~~d~v 79 (256)
+|-++|||||++|.+...++ .+.++..||......+..+.-..+.++||||+.|-...+...++... ..+. .=--+|
T Consensus 174 cG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA-HLraaV 251 (620)
T KOG1490|consen 174 CGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA-HLRSAV 251 (620)
T ss_pred ecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH-Hhhhhh
Confidence 58999999999999988776 67788888888888887777788899999999986443332222111 1111 123578
Q ss_pred EEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189 80 LYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 129 (256)
Q Consensus 80 L~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~ 129 (256)
||+++++... .+ ++...+++.|+..|.. +++|+|+||+|...+++..
T Consensus 252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~ 300 (620)
T KOG1490|consen 252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLD 300 (620)
T ss_pred eeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccC
Confidence 9998887633 23 3456788999999976 7899999999997666544
No 190
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.16 E-value=2.1e-10 Score=99.47 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cc-------------cCCC------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TV-------------NSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~-------------~~~~------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|..|+|||||+|+|+....+ .. .++. +.+-.......++++.++.+|||||..+..
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~-- 85 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFS-- 85 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHH--
Confidence 699999999999999853211 11 1110 111122334567889999999999986432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+....+ ..+|++++|++... ........+++..... + .|+++++||+|..
T Consensus 86 -~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~-~----~P~iivvNK~D~~ 136 (267)
T cd04169 86 -EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVCRLR-G----IPIITFINKLDRE 136 (267)
T ss_pred -HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHHHhc-C----CCEEEEEECCccC
Confidence 1222222 47899999977764 3444445555444332 2 6899999999974
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.16 E-value=1.2e-10 Score=90.84 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+.... .. .|. ...+.+ .+|||||... ........+... ..++|+++
T Consensus 6 iG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~ad~vi 67 (142)
T TIGR02528 6 IGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADADVIA 67 (142)
T ss_pred ECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcCCEEE
Confidence 699999999999999987631 11 111 122333 6899999732 112222222222 26899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. +..+..+. +.++ +|+++|+||+|+.
T Consensus 68 lv~d~~~~~-s~~~~~~~----~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 68 LVQSATDPE-SRFPPGFA----SIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred EEecCCCCC-cCCChhHH----Hhcc----CCeEEEEEeeccC
Confidence 998886533 22222222 2222 4899999999985
No 192
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.15 E-value=2e-10 Score=91.88 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|+|||||+|+|.|.... . ..|. ...+.+. .+|||||..... ......+...+ .++|++|
T Consensus 7 iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~~--~~ad~il 69 (158)
T PRK15467 7 VGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEYFSH---PRWYHALITTL--QDVDMLI 69 (158)
T ss_pred ECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccccCC---HHHHHHHHHHH--hcCCEEE
Confidence 699999999999999987521 1 1111 1122222 269999986442 12222222211 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.+... +.... .+.+. +.. +++++++||+|+.
T Consensus 70 ~v~d~~~~~-s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~ 104 (158)
T PRK15467 70 YVHGANDPE-SRLPA----GLLDI-GVS--KRQIAVISKTDMP 104 (158)
T ss_pred EEEeCCCcc-cccCH----HHHhc-cCC--CCeEEEEEccccC
Confidence 998877432 11111 12222 222 6899999999984
No 193
>PLN00023 GTP-binding protein; Provisional
Probab=99.14 E-value=4e-10 Score=99.32 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeC---------------CeEEEEEeCCCCCCCCcCcHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKG---------------GFTLNIIDTPGLVEAGYVNYQAL 64 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~---------------g~~v~liDTPG~~~~~~~~~~~~ 64 (256)
+|.+|||||||++.+.+... ......+. .........++ ...+.||||+|..........
T Consensus 27 LGdsGVGKTSLI~rf~~g~F--~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~-- 102 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGSS--IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSL-- 102 (334)
T ss_pred ECCCCCcHHHHHHHHhcCCc--ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHH--
Confidence 69999999999999998753 12221111 11111222322 256899999997543321111
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC----------cccccEEEEEecccCCC
Q 025189 65 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK----------QIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 65 ~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~----------~~~~~~ivv~Tk~D~~~ 124 (256)
++ .++|++|+|+++++....+.-..+++.+....+. ..-.+++||.||+|+.+
T Consensus 103 -----yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 103 -----FY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred -----hc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 12 6899999999998744334445677777765320 01268999999999853
No 194
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=6.4e-10 Score=94.67 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCCCCCc--Cc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccEEE
Q 025189 43 FTLNIIDTPGLVEAGY--VN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLL 115 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~iv 115 (256)
..++++||||+..... .. ..+.+.+..++. ...+++|+|++... .+...+ .++.+.+.... +++++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~l~ia~~ld~~~-----~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDALKLAKEVDPQG-----ERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhHHHHHHHHHHcC-----CcEEE
Confidence 3579999999975321 11 123333444442 24568899966543 344444 46666665542 89999
Q ss_pred EEecccCC
Q 025189 116 VLTHAQLC 123 (256)
Q Consensus 116 v~Tk~D~~ 123 (256)
|+||+|..
T Consensus 198 ViTK~D~~ 205 (240)
T smart00053 198 VITKLDLM 205 (240)
T ss_pred EEECCCCC
Confidence 99999986
No 195
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.14 E-value=2.4e-10 Score=94.67 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=83.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||++...+++.. .+..+.++..........++|. .+.|+||+|..+.....+.++ ...|+
T Consensus 9 lG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~---------~~~~g 77 (196)
T KOG0395|consen 9 LGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYI---------RNGDG 77 (196)
T ss_pred ECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhh---------ccCcE
Confidence 6999999999999988876 3455666665555556666654 567999999544432222222 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchh
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 131 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~ 131 (256)
|++|+++++....+....+.+.|.+..+.+ +.|+++|.||+|+......+.+
T Consensus 78 F~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~e 129 (196)
T KOG0395|consen 78 FLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEE 129 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHH
Confidence 999999998544555667777776655544 3799999999999644444433
No 196
>PLN03127 Elongation factor Tu; Provisional
Probab=99.14 E-value=1.7e-09 Score=100.22 Aligned_cols=108 Identities=10% Similarity=0.071 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCC------Cccccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGE------RVVTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~------~~~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|.+. ...... ...+.|........+.++.+++++||||..+ ++.
T Consensus 67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-------f~~ 139 (447)
T PLN03127 67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-------YVK 139 (447)
T ss_pred ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-------hHH
Confidence 589999999999999842 111110 1134455555555666788999999999853 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+.+.+..+... | .+ +++++||+|+.
T Consensus 140 ~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv 190 (447)
T PLN03127 140 NMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVV 190 (447)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccC
Confidence 333222 36999999977654 3566677777766554 3 45 67899999985
No 197
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.13 E-value=3.8e-10 Score=107.59 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+++|||||+|+|.+..++. +...+.|.....+...+++ ..+++|||||..+.... ..+. ...+|++
T Consensus 93 ~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~-------r~rg--a~~aDia 162 (587)
T TIGR00487 93 MGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM-------RARG--AKVTDIV 162 (587)
T ss_pred ECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH-------HHhh--hccCCEE
Confidence 6999999999999999876532 3334455555455555644 48999999998643211 1111 1578999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.++. ........+...... + .|+++++||+|+.
T Consensus 163 ILVVda~dg-v~~qT~e~i~~~~~~---~--vPiIVviNKiDl~ 200 (587)
T TIGR00487 163 VLVVAADDG-VMPQTIEAISHAKAA---N--VPIIVAINKIDKP 200 (587)
T ss_pred EEEEECCCC-CCHhHHHHHHHHHHc---C--CCEEEEEECcccc
Confidence 999887753 333444444333221 2 7899999999984
No 198
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.13 E-value=2.8e-10 Score=105.08 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN------------------------------SFQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..++|||||+|+|++...+... ...+.|........+.++..+++|||
T Consensus 12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDt 91 (425)
T PRK12317 12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDC 91 (425)
T ss_pred ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEEC
Confidence 699999999999999954321110 02345666666667778999999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+.. ..+...+ ..+|++|+|++.++. .+...+...+..+. .++. +++++++||+|+.
T Consensus 92 pG~~~~~-------~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl~ 152 (425)
T PRK12317 92 PGHRDFV-------KNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDAV 152 (425)
T ss_pred CCcccch-------hhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence 9974321 1111111 479999999887641 13333444444333 3332 4789999999985
No 199
>PRK09866 hypothetical protein; Provisional
Probab=99.13 E-value=1.3e-09 Score=102.92 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
.++.++||||+...... ..-+.+.+.+ .++|+||||++.+. ..+..|..+++.+.+. ++. .|+++|+||+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQS--VPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CCC--CCEEEEEEcccC
Confidence 35789999999865322 1111222222 58999999966653 3678888888888765 321 489999999998
Q ss_pred C
Q 025189 123 C 123 (256)
Q Consensus 123 ~ 123 (256)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 5
No 200
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.3e-10 Score=90.92 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-CCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~-~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|..+|||||||+.++-.... ..+. ....+.......+.|+ .+.+|||.|.......-..|+ ++..
T Consensus 28 lGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~---------Rds~ 96 (221)
T KOG0094|consen 28 LGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI---------RDSS 96 (221)
T ss_pred EccCccchHHHHHHHHHhhhc--ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc---------cCCe
Confidence 699999999999999876532 1222 2222333344455554 568999999865443322222 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 132 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~ 132 (256)
++++|+++.+....+...++++.+...-|.+- ..+++|.||.|+.+.++.+.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE 150 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE 150 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence 99999999985556677788888887777532 5678899999997655544443
No 201
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.11 E-value=8.4e-10 Score=88.19 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||++.+++.... ....+ +.........++| ..+.+|||+|..+ ..+ . ...|+
T Consensus 6 vG~~gvGKTsli~~~~~~~f~--~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~---~------~~~~~ 68 (158)
T cd04103 6 VGNLQSGKSALVHRYLTGSYV--QLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQF---A------SWVDA 68 (158)
T ss_pred ECCCCCcHHHHHHHHHhCCCC--CCCCC-CccceEEEEEECCEEEEEEEEECCCCCc-----hhH---H------hcCCE
Confidence 699999999999998875421 11222 1222223445666 4578999999853 111 1 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+++.+...... ...|+++|.||.|+.
T Consensus 69 ~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 69 VIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 99999998744223334567777665421 126899999999973
No 202
>PLN03126 Elongation factor Tu; Provisional
Probab=99.11 E-value=1.6e-09 Score=101.03 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++......+ ...+.|.+........++..+++|||||..+ +..
T Consensus 87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-------f~~ 159 (478)
T PLN03126 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-------YVK 159 (478)
T ss_pred ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-------HHH
Confidence 589999999999999963211100 0112333333334456788999999999743 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. -......+.+..+... |. +++++++||+|+.
T Consensus 160 ~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~ 210 (478)
T PLN03126 160 NMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQV 210 (478)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEeccccc
Confidence 333322 47899999977664 2445555566554433 32 4588999999985
No 203
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.11 E-value=1.4e-09 Score=103.93 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc--ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT--VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|..++|||||+|+|+|..... .....+.|..........++..+.+|||||.. .+...+.... .++|+
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~--~~aD~ 76 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG--GGIDA 76 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--ccCCE
Confidence 5999999999999999864211 11122445555555567778899999999963 2333332222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|++.+.. ......+.+..+. ..|- +++++|+||+|+.
T Consensus 77 aILVVDa~~G-~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 77 ALLVVDADEG-VMTQTGEHLAVLD-LLGI---PHTIVVITKADRV 116 (581)
T ss_pred EEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence 9999887752 3344445554443 3332 3599999999985
No 204
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.10 E-value=3.8e-10 Score=94.34 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|..|||||||+|++.+......... ..+........... ..++.+|||+|..+...... ... .++++
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~----~y~-----~~~~~ 80 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPEGYPP-TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRP----EYY-----RGANG 80 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcccCCC-ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHH----HHh-----cCCCE
Confidence 59999999999999999865322221 11111111111122 45689999999865431111 111 68999
Q ss_pred EEEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|++... .++.+.-..+.+.+....+.. .++++|.||+|+..
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~ 125 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFD 125 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEeccccccc
Confidence 999987776 445566666777777765433 79999999999863
No 205
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.10 E-value=4.3e-10 Score=97.53 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-----------------EEEEEeCCCCCCCCcCcH--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-----------------TLNIIDTPGLVEAGYVNY-- 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~liDTPG~~~~~~~~~-- 61 (256)
+|.++||||||+|+|++.+. .+++++.+|..+......+.+. ++.++||||+..+.....
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~gl 82 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 82 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHH
Confidence 69999999999999999987 7888899998887766666543 489999999987654332
Q ss_pred --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 62 --QALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 62 --~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
+++..+ ..+|++++|++..
T Consensus 83 g~~fL~~i------~~~D~li~VV~~f 103 (274)
T cd01900 83 GNKFLSHI------REVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHH------HhCCEEEEEEeCc
Confidence 233333 5899999997763
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.09 E-value=1.5e-09 Score=103.85 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++........ ..+.|.........+++..+.+|||||..+... ....
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~---~v~~ 87 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG---EVER 87 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH---HHHH
Confidence 5899999999999999742111110 112233334455677899999999999876431 1222
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+ ..+|++++|++... .........+..+... + .|.++++||+|..
T Consensus 88 ~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~ 133 (607)
T PRK10218 88 VM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-G----LKPIVVINKVDRP 133 (607)
T ss_pred HH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-C----CCEEEEEECcCCC
Confidence 22 58999999977765 3444555555554443 2 6789999999974
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=99.09 E-value=2.7e-09 Score=97.54 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV------VTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++... +... ...+.|..........++..++++||||.. +++.
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~ 90 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK 90 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-------HHHH
Confidence 58999999999999997321 0000 012344444444444567889999999963 3333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+...+..+... |. +++++++||+|+.
T Consensus 91 ~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~ 141 (394)
T PRK12736 91 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-GV---PYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-CC---CEEEEEEEecCCc
Confidence 332222 47899999977664 2455666666665544 31 3478899999985
No 208
>PRK00049 elongation factor Tu; Reviewed
Probab=99.09 E-value=2.5e-09 Score=97.87 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcc------ccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV------TVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~------~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++.... ... ...+.|..........++.+++++||||.. ++..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~f~~ 90 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK 90 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-------HHHH
Confidence 588999999999999973110 000 012344444444445577889999999973 3333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE-EEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~-ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+...+..+... + .+. ++++||+|+.
T Consensus 91 ~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred HHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCc
Confidence 333322 58999999977664 3566777777666544 3 465 4689999985
No 209
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8.4e-10 Score=90.35 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=79.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||+++-.+..... ..+-...-.-.......+.+|. .+.+|||.|.......-..|. ++++.
T Consensus 18 iGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy---------rgA~g 87 (207)
T KOG0078|consen 18 IGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY---------RGAMG 87 (207)
T ss_pred ECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH---------hhcCe
Confidence 69999999999988876643 2222222223333344456665 568999999875442222222 69999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++.+....+....+++.+.+.-.++ .+.++|.||+|+..
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEE 131 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccc
Confidence 999999988666677777999999987665 78999999999854
No 210
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.8e-10 Score=91.20 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=83.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.||||||-|+-.+...+. .....++...+.......++|. +..||||.|..........|. +++..
T Consensus 20 iGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY---------rgAvG 89 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY---------RGAVG 89 (222)
T ss_pred eCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh---------cccce
Confidence 69999999999988876543 3332333334444455566665 458999999976654443333 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGL 128 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~ 128 (256)
.|+|+++......+...+++++|+.....+ ..+++|.||+|+...+..
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV 137 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAV 137 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhcccc
Confidence 999999986445567788999999987666 789999999999654443
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.06 E-value=1.7e-09 Score=103.37 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----cc----------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT-----VN----------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~-----~~----------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|+...-.. +. ...+.|.........+++..+++|||||..+.. .
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~-------~ 79 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG-------G 79 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH-------H
Confidence 6899999999999998632110 00 011234444455677889999999999986532 2
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++... ........+++.+.+. + .|.++|+||+|+.
T Consensus 80 ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~ 129 (594)
T TIGR01394 80 EVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-G----LKPIVVINKIDRP 129 (594)
T ss_pred HHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-C----CCEEEEEECCCCC
Confidence 222222 47899999977764 2445555666655543 2 6789999999984
No 212
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.06 E-value=8e-10 Score=91.50 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHH-HHhCCCcc---cccCCCCCcc--eeEEEE--------eeeCC--eEEEEEeCCCCCCCCcCcHHHH
Q 025189 1 MGKGGVGKSSTVN-SVIGERVV---TVNSFQSEAL--RPVMVS--------RSKGG--FTLNIIDTPGLVEAGYVNYQAL 64 (256)
Q Consensus 1 vG~tG~GKSSliN-~l~g~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~v~liDTPG~~~~~~~~~~~~ 64 (256)
+|.+|||||||++ .+.+.... ....+.++.. ...... ..++| ..+.+|||+|..+. ...
T Consensus 8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~~~--- 82 (195)
T cd01873 8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--DRR--- 82 (195)
T ss_pred ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--hhc---
Confidence 6999999999996 44433210 1112222221 111101 12344 46789999998531 100
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 65 ELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 65 ~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+ -+++|++++|+++++.. +......+++.+.+... + .|+++|.||+|+.
T Consensus 83 ----~~--~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~ 133 (195)
T cd01873 83 ----FA--YGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLR 133 (195)
T ss_pred ----cc--CCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcc
Confidence 01 16899999999998633 22222246666665532 2 6899999999984
No 213
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.06 E-value=2.1e-09 Score=89.44 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
..+.+|||||.. .+...+...+ ..+|++++|++++...........+..+.. .+. +++++|+||+|+
T Consensus 83 ~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEchhc
Confidence 789999999952 2333332222 478999999877642122333444444432 221 578999999998
Q ss_pred C
Q 025189 123 C 123 (256)
Q Consensus 123 ~ 123 (256)
.
T Consensus 150 ~ 150 (203)
T cd01888 150 V 150 (203)
T ss_pred c
Confidence 4
No 214
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.05 E-value=5.9e-10 Score=108.18 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|+|||||+++|.+...+ .+...+.|.....+...+ .+..+++|||||... +.....+.+ ..+
T Consensus 250 vGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~rg~--~~a 319 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSRGA--NVT 319 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHHHH--HHC
Confidence 699999999999999987653 222233443333333322 358899999999742 222222222 579
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++ .........+..+... ..|+++++||+|+.
T Consensus 320 DiaILVVDA~d-Gv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~ 360 (742)
T CHL00189 320 DIAILIIAADD-GVKPQTIEAINYIQAA-----NVPIIVAINKIDKA 360 (742)
T ss_pred CEEEEEEECcC-CCChhhHHHHHHHHhc-----CceEEEEEECCCcc
Confidence 99999988775 3334444444444322 27899999999985
No 215
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=6.6e-09 Score=95.06 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCC------Cccccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGE------RVVTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~------~~~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+++|++. ..+... ...+.|..........++.++++|||||..+ +..
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-------f~~ 90 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-------YVK 90 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-------HHH
Confidence 588999999999999853 111100 0134455554444555678899999999753 222
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++++. .....+.+.+..+... |- +++++++||+|+.
T Consensus 91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 91 NMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence 332222 47899999977764 2455666666665443 31 3456789999985
No 216
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.05 E-value=1.3e-09 Score=106.28 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=74.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT-----VNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..++|||||+|+|++..... +.. ..+.|........++++.++++|||||..+... +.
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~---~~ 92 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV---EV 92 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH---HH
Confidence 6999999999999998532110 111 123455555667788999999999999976321 22
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++++|++... .....+..++..+.+.. .|+++++||+|+.
T Consensus 93 ~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~ 140 (689)
T TIGR00484 93 ERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRYE-----VPRIAFVNKMDKT 140 (689)
T ss_pred HHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 2222 47899999977664 34555666666655432 7889999999985
No 217
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.04 E-value=1e-09 Score=104.65 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=65.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee------------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------KGGFTLNIIDTPGLVEAGYVNYQ 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~v~liDTPG~~~~~~~~~~ 62 (256)
+|.+++|||||+|+|.+..+.. +...+.|+........ .....+++|||||......
T Consensus 10 iG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~---- 84 (590)
T TIGR00491 10 LGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN---- 84 (590)
T ss_pred ECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH----
Confidence 6999999999999999986532 1111222211111110 1112488999999753221
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
....+. ..+|++++|+++++ .....+...+..+... -.|+++++||+|+.
T Consensus 85 ---l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 85 ---LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI 134 (590)
T ss_pred ---HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 111111 58999999988775 3445555555555432 26899999999985
No 218
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.04 E-value=8.3e-10 Score=89.77 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|..|+||||+++.|.......+ ..|.........+++..+.+||.+|-......-+.+. .++|+++
T Consensus 20 lGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~---------~~~~~iI 86 (175)
T PF00025_consen 20 LGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYF---------QNADGII 86 (175)
T ss_dssp EESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGH---------TTESEEE
T ss_pred ECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccccccceeec---------cccceeE
Confidence 59999999999999997654221 1233344556678999999999999643221111222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~ 123 (256)
||++..+.. .-.+..+.|.+.+... .-.|+++++||.|..
T Consensus 87 fVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 87 FVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp EEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred EEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence 997666422 1222333344443321 137999999999974
No 219
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.2e-09 Score=87.69 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||.|+-.++.+..-++... +-..+.-.....+++ .++.||||.|......... .+. +++-.
T Consensus 12 iGd~gVGKSclllrf~~krF~~~hd~-TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~-------syY--r~a~G 81 (216)
T KOG0098|consen 12 IGDTGVGKSCLLLRFTDKRFQPVHDL-TIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTR-------SYY--RGAAG 81 (216)
T ss_pred ECCCCccHHHHHHHHhccCccccccc-eeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHH-------HHh--ccCcc
Confidence 69999999999999998864333321 111111122334554 4678999999864332222 222 58889
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 129 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~ 129 (256)
.|+|++++..........++..+++...++ .-++++.||+|+...+..+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs 130 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVS 130 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcccccc
Confidence 999999986444455567888888776555 5678888999996444433
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.03 E-value=3.9e-09 Score=89.26 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=52.2
Q ss_pred eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe
Q 025189 39 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118 (256)
Q Consensus 39 ~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T 118 (256)
+..+..++++||||.. .+.......+....+|++++|++.+. .....+..++..+...- .|+++|+|
T Consensus 80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvN 146 (224)
T cd04165 80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVT 146 (224)
T ss_pred eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEE
Confidence 4557889999999964 23333333333246899999977764 46788888888776653 68999999
Q ss_pred cccCC
Q 025189 119 HAQLC 123 (256)
Q Consensus 119 k~D~~ 123 (256)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99984
No 221
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=8.2e-10 Score=85.45 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+-.+.... +..+-......+.......++| +++.||||.|...... +...+- +++|.
T Consensus 14 igDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt----itstyy-----rgthg 83 (198)
T KOG0079|consen 14 IGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT----ITSTYY-----RGTHG 83 (198)
T ss_pred ecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH----HHHHHc-----cCCce
Confidence 6899999999997776653 2222222223334444455555 4678999999753322 222221 69999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++.......+-.++++.+...+.. .+-++|.||.|..
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDP 125 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCc
Confidence 99999998766667788999999888763 6779999999984
No 222
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.02 E-value=1.4e-09 Score=97.55 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcCcH--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYVNY-- 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~~~-- 61 (256)
||.++||||||+|+|++.. +.+++++.+|..+......+.+ .++.++||||+..+....+
T Consensus 8 VG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl 86 (364)
T PRK09601 8 VGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 86 (364)
T ss_pred ECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHH
Confidence 6999999999999999998 5788889999888766555543 2589999999987544332
Q ss_pred --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 62 --QALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 62 --~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
+++..+ ..+|++++|++..
T Consensus 87 g~~fL~~i------~~aD~li~VVd~f 107 (364)
T PRK09601 87 GNQFLANI------REVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHH------HhCCEEEEEEeCC
Confidence 233333 5899999997763
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.02 E-value=4.2e-09 Score=88.71 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..|+|||||+.+|+...-+. ..+ ..+.|.........+++..+++|||
T Consensus 5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDt 84 (219)
T cd01883 5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDA 84 (219)
T ss_pred ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEEC
Confidence 6999999999999997431100 000 1234555556667789999999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++++|++..+.. ........+... ...+. +++++|+||+|+.
T Consensus 85 pG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~Dl~ 150 (219)
T cd01883 85 PGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKMDDV 150 (219)
T ss_pred CChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEccccc
Confidence 99743 112222222 4799999997776521 111223333322 23332 6899999999985
No 224
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.01 E-value=7.4e-10 Score=86.85 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
||.+|||||||+-++.....-...+ .....+.......++|. ++.||||.|..........|. +++..
T Consensus 17 IGeSGVGKSSLllrFv~~~fd~~~~-~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy---------RgaqG 86 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSNTFDDLHP-TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY---------RGAQG 86 (209)
T ss_pred EccCCccHHHHHHHHHhcccCccCC-ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh---------ccCce
Confidence 6999999999999988765422221 11223344455566654 678999999987665555554 68999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++.... |... ..+++++....-++ -.--++|.||.|..
T Consensus 87 iIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDke 130 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKE 130 (209)
T ss_pred eEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccch
Confidence 99999998633 4333 45666666554321 13357899999964
No 225
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.00 E-value=6.5e-09 Score=99.85 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|..++|||||+|+|+|.+.... ....+.|......... .++..+.+|||||.. .+...+...+ .++|
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~--~~~D 76 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV--GGID 76 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--hcCC
Confidence 59999999999999998642111 1112334333322222 257788999999973 2333333222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|++.+. .....+.+.+..+.. +|. .++++|+||+|+.
T Consensus 77 ~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv 117 (614)
T PRK10512 77 HALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV 117 (614)
T ss_pred EEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence 9999988775 355666666665543 342 4568999999985
No 226
>PTZ00258 GTP-binding protein; Provisional
Probab=99.00 E-value=1.5e-09 Score=98.26 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-----------------CeEEEEEeCCCCCCCCcCcH--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----------------GFTLNIIDTPGLVEAGYVNY-- 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-----------------g~~v~liDTPG~~~~~~~~~-- 61 (256)
||.+|||||||+|+|++..+ .+++++.+|..+......+. +.++.++||||+........
T Consensus 27 VG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL 105 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL 105 (390)
T ss_pred ECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence 69999999999999998875 78889999988877666554 23589999999987543322
Q ss_pred --HHHHHHHHhhhcCCCcEEEEEEeC
Q 025189 62 --QALELIKGFLLNKTIDVLLYADRL 85 (256)
Q Consensus 62 --~~~~~i~~~l~~~~~d~vL~v~~~ 85 (256)
.++..+ ..+|++++|++.
T Consensus 106 g~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 106 GNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred HHHHHHHH------HHCCEEEEEEeC
Confidence 334444 489999999876
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=98.99 E-value=5.5e-09 Score=95.61 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCC------Ccccc-c--------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGE------RVVTV-N--------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~------~~~~~-~--------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+|+|++. ..+.. . ...+.|........+.++.+++++||||.. ++..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~ 90 (396)
T PRK12735 18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------DYVK 90 (396)
T ss_pred ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-------HHHH
Confidence 599999999999999972 11000 0 012334444444445577889999999973 3333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .....+.+.+..+... | .+ +++++||+|+.
T Consensus 91 ~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred HHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence 333322 47899999977764 2455555566554432 3 45 55689999985
No 228
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.99 E-value=5.9e-10 Score=96.79 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (256)
||.++||||||+|.|++.+. .+++++.+|..+.....+++|.++.++|+||+.++.... .+++..+ +.+
T Consensus 69 VGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~------R~A 141 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA------RNA 141 (365)
T ss_pred EcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee------ccC
Confidence 69999999999999999875 678889999999999999999999999999999865433 3455444 589
Q ss_pred cEEEEEEeCC
Q 025189 77 DVLLYADRLD 86 (256)
Q Consensus 77 d~vL~v~~~d 86 (256)
|+|++|+++.
T Consensus 142 DlIiiVld~~ 151 (365)
T COG1163 142 DLIIIVLDVF 151 (365)
T ss_pred CEEEEEEecC
Confidence 9999996665
No 229
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.99 E-value=2e-09 Score=96.98 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CcceeEE---EEeeeC-----CeEEEEEeCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGE----RVV-----------TVNSFQS---EALRPVM---VSRSKG-----GFTLNIIDTPGLV 54 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~----~~~-----------~~~~~~~---~t~~~~~---~~~~~~-----g~~v~liDTPG~~ 54 (256)
+|+.++|||||||++++. +++ .+++.++ +|.++.. ...++. ..+++++||+|+.
T Consensus 23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~ 102 (492)
T TIGR02836 23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT 102 (492)
T ss_pred EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence 699999999999999998 555 4555556 6666655 222221 2578999999999
Q ss_pred CCCcCcH----H----------------------HHHHHHHhhhcCCCcEEEEEE-eCC-----CCCCCHHHHHHHHHHH
Q 025189 55 EAGYVNY----Q----------------------ALELIKGFLLNKTIDVLLYAD-RLD-----AYRVDDLDRQIIKAVT 102 (256)
Q Consensus 55 ~~~~~~~----~----------------------~~~~i~~~l~~~~~d~vL~v~-~~d-----~~r~~~~~~~~~~~l~ 102 (256)
+.+.... . ..+.|. .+.|.-|+|. +-+ .....+.+.++++.|+
T Consensus 103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-----dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-----EHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred cCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-----hcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 8653221 1 222222 3788888884 221 0136678899999998
Q ss_pred hhcCCcccccEEEEEecccC
Q 025189 103 GTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 103 ~~~g~~~~~~~ivv~Tk~D~ 122 (256)
+.- +|+++|+|++|-
T Consensus 178 ~~~-----kPfiivlN~~dp 192 (492)
T TIGR02836 178 ELN-----KPFIILLNSTHP 192 (492)
T ss_pred hcC-----CCEEEEEECcCC
Confidence 875 999999999994
No 230
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.99 E-value=3.9e-09 Score=88.37 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--e--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--R--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||++.++.... . ..+. .|....... . ...+..+.+|||||........ ..+. ...
T Consensus 15 iG~~g~GKTtLi~~~~~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~~--~~~ 82 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGEF-E-KKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGYY--IKG 82 (215)
T ss_pred ECCCCCCHHHHHHHHHhCCC-C-CCCC-CccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHHh--ccC
Confidence 69999999999986554332 1 1111 112122211 1 2234678999999964332111 1111 478
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|++++..........++..+.+.. ++ .++++|.||+|+.
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVK 126 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCc
Confidence 99999988875322222334555555443 23 6888999999974
No 231
>PRK12739 elongation factor G; Reviewed
Probab=98.98 E-value=3.4e-09 Score=103.40 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc-----ccccC------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV-----VTVNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-----~~~~~------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..++|||||+|+|+.... ..+.. ..+.|........++++.+++++||||..+.
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f------- 86 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF------- 86 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-------
Confidence 69999999999999975311 01111 1234555556667789999999999998542
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..++...+ ..+|++++|++... .....+..++..+.+.- .|.++++||+|+.
T Consensus 87 ~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 11222222 47899999977654 35677777777765542 6889999999985
No 232
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.4e-08 Score=78.82 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|..|+||+-|+..++.. .++.+..............+++|. ++.||||.|..........|. +.+|+
T Consensus 13 vgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyy---------rsaha 82 (213)
T KOG0095|consen 13 VGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYY---------RSAHA 82 (213)
T ss_pred EccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHh---------hhcce
Confidence 699999999999988865 444444333333444555666664 668999999865443333332 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|++++.....+-..+++..|.+.-... .-.|+|.||.|+.+
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~d 126 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLAD 126 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhh
Confidence 999999987555566678999998886554 34589999999853
No 233
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.97 E-value=2.3e-09 Score=95.08 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee------------------------CCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------------------GGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~v~liDTPG~~~~ 56 (256)
+|.++||||||+|+|++... .+++++.+|..+......+ .+.++.+|||||+..+
T Consensus 4 vG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g 82 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG 82 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence 69999999999999999864 6788888877766543322 2357899999999654
Q ss_pred CcCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 57 GYVN----YQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 57 ~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
.... ..++..+ ..+|++++|+++.
T Consensus 83 a~~~~glg~~fL~~i------r~aD~ii~Vvd~~ 110 (318)
T cd01899 83 AHEGKGLGNKFLDDL------RDADALIHVVDAS 110 (318)
T ss_pred ccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 3222 2344445 4899999998886
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.96 E-value=1.7e-08 Score=94.31 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--------------CC------------------CCCcceeEEEEeeeCCeEEEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN--------------SF------------------QSEALRPVMVSRSKGGFTLNII 48 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~--------------~~------------------~~~t~~~~~~~~~~~g~~v~li 48 (256)
+|..++|||||+++|+...-.... .. .+.|........+.++.++++|
T Consensus 33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~i 112 (474)
T PRK05124 33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIA 112 (474)
T ss_pred ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEE
Confidence 699999999999999865321110 00 0123334444456678899999
Q ss_pred eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||||.. .+...+...+ ..+|++|+|++.+. .....+.+.+.. ...+|. +++++++||+|+.
T Consensus 113 DTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l-~~~lg~---~~iIvvvNKiD~~ 173 (474)
T PRK05124 113 DTPGHE-------QYTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFI-ATLLGI---KHLVVAVNKMDLV 173 (474)
T ss_pred ECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHH-HHHhCC---CceEEEEEeeccc
Confidence 999953 2332333222 58999999977664 233333333322 233342 6889999999985
No 235
>PRK00007 elongation factor G; Reviewed
Probab=98.96 E-value=6.2e-09 Score=101.61 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHhC---CCcc--ccc------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIG---ERVV--TVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g---~~~~--~~~------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..++|||||+|+|+. .... .++ ...+.|.........+++..++++||||..+.
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f------- 88 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF------- 88 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-------
Confidence 69999999999999974 2110 011 11234555555667788999999999997542
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..++...+ ..+|++++|++... .....+..++..+.+.. .+.++++||+|+.
T Consensus 89 ~~ev~~al--~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~ 140 (693)
T PRK00007 89 TIEVERSL--RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHH--HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 11222222 47899999976553 36777777887776653 6889999999985
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.95 E-value=2.6e-09 Score=83.45 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
||++|+|||||+++|.|.... + .-|+. ..+.+ .+|||||=+-.. ..+...+.. ....+|+|+
T Consensus 7 iG~~g~GKTTL~q~L~~~~~~----~-~KTq~-----i~~~~---~~IDTPGEyiE~---~~~y~aLi~--ta~dad~V~ 68 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNGEEIR----Y-KKTQA-----IEYYD---NTIDTPGEYIEN---PRFYHALIV--TAQDADVVL 68 (143)
T ss_pred ECCCCCCHHHHHHHHcCCCCC----c-Cccce-----eEecc---cEEECChhheeC---HHHHHHHHH--HHhhCCEEE
Confidence 699999999999999997641 1 12221 22333 369999965432 222222211 225899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|.+.+..+ . .+--.+.+.|. +|+|=|+||+|+.
T Consensus 69 ll~dat~~~-~----~~pP~fa~~f~----~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 69 LLQDATEPR-S----VFPPGFASMFN----KPVIGVITKIDLP 102 (143)
T ss_pred EEecCCCCC-c----cCCchhhcccC----CCEEEEEECccCc
Confidence 997766532 0 11112234443 7999999999985
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.94 E-value=4.7e-09 Score=101.52 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC----------CC----------------------CCcceeEEEEeeeCCeEEEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS----------FQ----------------------SEALRPVMVSRSKGGFTLNII 48 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~g~~v~li 48 (256)
+|..++|||||+|+|+....+..+. .. +.|........+.++.+++++
T Consensus 30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li 109 (632)
T PRK05506 30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA 109 (632)
T ss_pred ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence 6999999999999999754322210 11 123333344556778899999
Q ss_pred eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||||..+ +...+...+ ..+|++|+|++.+. .....+...+..+.. .+. +++++++||+|+.
T Consensus 110 DtPG~~~-------f~~~~~~~~--~~aD~~llVvda~~-g~~~~t~e~~~~~~~-~~~---~~iivvvNK~D~~ 170 (632)
T PRK05506 110 DTPGHEQ-------YTRNMVTGA--STADLAIILVDARK-GVLTQTRRHSFIASL-LGI---RHVVLAVNKMDLV 170 (632)
T ss_pred ECCChHH-------HHHHHHHHH--HhCCEEEEEEECCC-CccccCHHHHHHHHH-hCC---CeEEEEEEecccc
Confidence 9999632 222222222 58999999977764 233333334433333 232 6889999999985
No 238
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.93 E-value=7e-09 Score=97.93 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGER--VVTVNSFQ-------------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|..|+|||||+++|+... +...+... +.+.........+++..+.+|||||..+..
T Consensus 17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~-- 94 (527)
T TIGR00503 17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFS-- 94 (527)
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHH--
Confidence 5899999999999986321 11111110 112223334567789999999999985422
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+....+ ..+|++|+|++... .+......+++..... ..|+++++||+|+.
T Consensus 95 -~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~ 145 (527)
T TIGR00503 95 -EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRLR-----DTPIFTFMNKLDRD 145 (527)
T ss_pred -HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 1222223 47999999977664 3555555666544332 27899999999974
No 239
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.92 E-value=9.7e-09 Score=94.88 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------cc------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT------------------------VN------SFQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~------------------------~~------~~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..++|||||+++|+...-.. +. ...+.|..........++..+.+|||
T Consensus 13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt 92 (426)
T TIGR00483 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC 92 (426)
T ss_pred EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence 5999999999999998531100 00 01234555555566777889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC--HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD--DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~--~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++++|++++...+. ......+ .+.+.++. +++++|+||+|+.
T Consensus 93 pGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~---~~iIVviNK~Dl~ 154 (426)
T TIGR00483 93 PGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGI---NQLIVAINKMDSV 154 (426)
T ss_pred CCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCC---CeEEEEEEChhcc
Confidence 99632 222332222 579999999888764221 1111111 12333442 5899999999985
No 240
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.91 E-value=5.9e-09 Score=99.60 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--ee----------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--RS----------------KGGFTLNIIDTPGLVEAGYVNYQ 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~~----------------~~g~~v~liDTPG~~~~~~~~~~ 62 (256)
+|.+|+|||||+|+|.|..++.... ...|....... .. +.-..+++|||||..+...
T Consensus 12 ~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~---- 86 (586)
T PRK04004 12 LGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN---- 86 (586)
T ss_pred ECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH----
Confidence 6999999999999999875431111 11111110000 00 0001268999999864321
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...... ..+|++++|++.++ .+.......+..+... ..|+++++||+|+.
T Consensus 87 ---~~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 87 ---LRKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred ---HHHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 111111 47999999988775 3455556666555432 27899999999974
No 241
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=84.32 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||.|.+...+... ........+.......++++ .+.||||.|........... . +++|+
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aF-------Y--RgaDc 84 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAF-------Y--RGADC 84 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccce-------e--cCCce
Confidence 5999999999999999875321 11122233334445556665 56799999986543222111 1 69999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHH-HhhcCC-cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAV-TGTFGK-QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l-~~~~g~-~~~~~~ivv~Tk~D~~ 123 (256)
+++|++++...-.+.-..+-+++ .+.-.. +-..|+||+.||.|..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 99999999754333333344333 333222 2346899999999984
No 242
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.89 E-value=1.9e-08 Score=85.17 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+|||||+|+|++... ..++...++ . ......+..+.++||||.. ...++.+ ..+|++
T Consensus 45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i--~i~~~~~~~i~~vDtPg~~------~~~l~~a------k~aDvV 107 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I--TVVTGKKRRLTFIECPNDI------NAMIDIA------KVADLV 107 (225)
T ss_pred ECCCCCCHHHHHHHHHhhcccCcccccccc---E--EEEecCCceEEEEeCCchH------HHHHHHH------HhcCEE
Confidence 59999999999999998621 111111111 1 1122367889999999742 2333333 478999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
++|++... .+...+..++..+... | .+ +++|+||+|+.
T Consensus 108 llviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~ 146 (225)
T cd01882 108 LLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLF 146 (225)
T ss_pred EEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccC
Confidence 99976653 3566667777766543 2 45 45699999985
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.89 E-value=1.1e-08 Score=93.84 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------------cC------------------CCCCcceeEEEEeeeCCeEEEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--------------NS------------------FQSEALRPVMVSRSKGGFTLNII 48 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--------------~~------------------~~~~t~~~~~~~~~~~g~~v~li 48 (256)
+|..++|||||+++|+...-... +. ..+.|.+......+.++.+++++
T Consensus 6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li 85 (406)
T TIGR02034 6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA 85 (406)
T ss_pred ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence 69999999999999985421100 00 01223444445556788899999
Q ss_pred eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||||..+ +...+...+ ..+|++|+|++.+. .....+.+.+..+. .+|. +++++++||+|+.
T Consensus 86 DtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~-~~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 86 DTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIAS-LLGI---RHVVLAVNKMDLV 146 (406)
T ss_pred eCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHH-HcCC---CcEEEEEEecccc
Confidence 9999642 332332222 58999999977764 24344444444333 3332 5789999999985
No 244
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.89 E-value=5.8e-10 Score=89.02 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|.||||||||+|+|++.....++.. ..+|.....+....+ ..||||||+.+.+..
T Consensus 41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFGLW 103 (161)
T ss_dssp ECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--GC
T ss_pred ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccccc
Confidence 59999999999999999854444332 124444444444233 379999999887544
No 245
>PRK13351 elongation factor G; Reviewed
Probab=98.88 E-value=9.4e-09 Score=100.36 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--ccc---------CC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVN---------SF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~---------~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..|+|||||+++|+..... ..+ ++ .+.|.........+++..+.+|||||..+..
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~------ 87 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT------ 87 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH------
Confidence 699999999999999853210 001 00 1223333344567789999999999986532
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.....++ ..+|++++|++.+. .........++.+... + .|+++|+||+|+.
T Consensus 88 -~~~~~~l--~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 138 (687)
T PRK13351 88 -GEVERSL--RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-G----IPRLIFINKMDRV 138 (687)
T ss_pred -HHHHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCCCC
Confidence 1222222 47899999977765 3445555666555443 1 7899999999985
No 246
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=3.2e-09 Score=83.22 Aligned_cols=51 Identities=31% Similarity=0.487 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 54 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~ 54 (256)
+|.+|+||||++|+|++.....++...+.|....... .++ .+.+|||||+.
T Consensus 89 ~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~i~DtpG~~ 139 (141)
T cd01857 89 VGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LTP-TITLCDCPGLV 139 (141)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE--eCC-CEEEEECCCcC
Confidence 5999999999999999988766776666666554433 333 57999999985
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.86 E-value=1.2e-08 Score=96.30 Aligned_cols=108 Identities=10% Similarity=0.166 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGER--VVTVNSFQ-------------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|..|+|||||+++|+... ....+... +.+.........+++..+++|||||..+..
T Consensus 16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~-- 93 (526)
T PRK00741 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFS-- 93 (526)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhH--
Confidence 5899999999999997321 11111100 111222334567889999999999986532
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+....+ ..+|++++|++... ........+++..... + .|+++++||+|+.
T Consensus 94 -~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-~----iPiiv~iNK~D~~ 144 (526)
T PRK00741 94 -EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-D----TPIFTFINKLDRD 144 (526)
T ss_pred -HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCccc
Confidence 1222222 47899999977764 3445555555544332 2 7899999999974
No 248
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.86 E-value=1.1e-08 Score=98.10 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCcceeEEEEeee---CC--eEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV-----NSF---------QSEALRPVMVSRSK---GG--FTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~-----~~~---------~~~t~~~~~~~~~~---~g--~~v~liDTPG~~~~~~~~~ 61 (256)
+|..|+|||||+++|+....+.. ..+ .+.|.........+ ++ ..+++|||||..+..
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~---- 84 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS---- 84 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH----
Confidence 69999999999999987532111 000 12232222222333 22 678999999997532
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+..++ ..+|++++|++++. .....+...+....+ .+ .++++|+||+|+.
T Consensus 85 ---~~v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~ 135 (595)
T TIGR01393 85 ---YEVSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALE---ND--LEIIPVINKIDLP 135 (595)
T ss_pred ---HHHHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHH---cC--CCEEEEEECcCCC
Confidence 1222222 47899999977764 233333333332222 12 6899999999984
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.86 E-value=2.5e-08 Score=84.50 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcC-----cHHHHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYV-----NYQALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~-----~~~~~~~i~~~l~~~ 74 (256)
||+.|+||||..+.+++.-.+.....-+.|.+....... .....+.+||.||..+.-.. .+.+. .
T Consensus 5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if---------~ 75 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF---------S 75 (232)
T ss_dssp EESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH---------C
T ss_pred EcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH---------h
Confidence 699999999999999987543322222334444444444 35569999999999864321 12222 6
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++++||+++......++-..+.+.+....-.+-..++-+.+.|+|+.
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 8999999987774344444344444444332212225788888999985
No 250
>PRK12740 elongation factor G; Reviewed
Probab=98.85 E-value=1.5e-08 Score=98.77 Aligned_cols=108 Identities=14% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--NSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..|+|||||+|+|+....+.. +.. .+.|.........+++..+++|||||..+.. ...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~---~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT---GEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH---HHH
Confidence 69999999999999965432111 100 1223333445667889999999999986421 122
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++++|++.+. .........+..+... + .++++|+||+|..
T Consensus 78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~ 125 (668)
T PRK12740 78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-G----VPRIIFVNKMDRA 125 (668)
T ss_pred HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEECCCCC
Confidence 2222 47999999977765 3455555566555443 2 7899999999985
No 251
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.85 E-value=7.4e-09 Score=90.79 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+||||||++|+|+|...+.+++.+++|...+.... +..+.++||||+..+...+.+.
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~~ 186 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQEV 186 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcHHH
Confidence 69999999999999999988888888888877654332 3457899999999877665543
No 252
>PRK12288 GTPase RsgA; Reviewed
Probab=98.82 E-value=5.2e-09 Score=93.91 Aligned_cols=55 Identities=33% Similarity=0.597 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~~ 58 (256)
+|.||||||||||+|+++....++..+. ||.....+....++ .|+||||+.+.+.
T Consensus 211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l 272 (347)
T PRK12288 211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGL 272 (347)
T ss_pred ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccC
Confidence 6999999999999999987666665432 44444444443344 5999999987654
No 253
>PRK12289 GTPase RsgA; Reviewed
Probab=98.82 E-value=4.2e-09 Score=94.61 Aligned_cols=55 Identities=29% Similarity=0.469 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~~ 58 (256)
+|.||||||||||+|++.....++..++ +|+....+...-+| .|+||||+.....
T Consensus 178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 6999999999999999987666666554 56666555443333 6999999987543
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.82 E-value=1.8e-08 Score=92.01 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee------------------------eCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------------KGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~v~liDTPG~~~~ 56 (256)
+|.+|||||||+|+|++... .+++++.+|..+...... ....++.++||||+..+
T Consensus 7 vG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~g 85 (396)
T PRK09602 7 VGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPG 85 (396)
T ss_pred ECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCC
Confidence 69999999999999999864 567787787766654322 12256889999999765
Q ss_pred CcC----cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 57 GYV----NYQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 57 ~~~----~~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
... ...++..+ ..+|++++|++..
T Consensus 86 a~~g~glg~~fL~~i------r~ad~ll~Vvd~~ 113 (396)
T PRK09602 86 AHEGRGLGNQFLDDL------RQADALIHVVDAS 113 (396)
T ss_pred ccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 322 22455555 4899999998875
No 255
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.80 E-value=1.6e-07 Score=79.44 Aligned_cols=95 Identities=19% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHhCC-CcccccC-CCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhh
Q 025189 1 MGKGGVGKSSTVNSVIGE-RVVTVNS-FQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL 72 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~ 72 (256)
+|++++|||+|+|.|+|. ..+.++. ..+||.......... .+..+.++||||+.+..... +..+..+..
T Consensus 13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~--- 89 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALAT--- 89 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHH---
Confidence 699999999999999998 2444443 467777666555444 36789999999999875433 112222211
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHHHHHHHH
Q 025189 73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVT 102 (256)
Q Consensus 73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~ 102 (256)
--.++++|.... .....+...+..+.
T Consensus 90 -llss~~i~n~~~---~~~~~~~~~l~~~~ 115 (224)
T cd01851 90 -LLSSVLIYNSWE---TILGDDLAALMGLL 115 (224)
T ss_pred -HHhCEEEEeccC---cccHHHHHHHHHHH
Confidence 136888888333 33444444444443
No 256
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=1.2e-08 Score=88.89 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|.+||||||++|+|.+...+.++..+++|...+.... +..+.++||||+..+...+.
T Consensus 124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence 69999999999999999988788888888877654333 23579999999977765544
No 257
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.78 E-value=6.1e-09 Score=90.47 Aligned_cols=55 Identities=31% Similarity=0.524 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~ 58 (256)
+|.||||||||+|+|.++....+++. ..||+....+....+| .|+|||||.+.+.
T Consensus 170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 59999999999999999654444332 2355556666655566 5999999987654
No 258
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.76 E-value=3.7e-08 Score=94.49 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----c---C------CCCCcceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV-----N---S------FQSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~-----~---~------~~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..++|||||+++|+...-... . + ..+.|.........+ .+..+++|||||..+..
T Consensus 13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~---- 88 (600)
T PRK05433 13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS---- 88 (600)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH----
Confidence 58999999999999986421100 0 0 012222222222333 25688999999997642
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+.+.+ ..+|++|+|++.+. .....+...+..... .+ .++++|+||+|+.
T Consensus 89 ---~~v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~ 139 (600)
T PRK05433 89 ---YEVSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALE---ND--LEIIPVLNKIDLP 139 (600)
T ss_pred ---HHHHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHH---CC--CCEEEEEECCCCC
Confidence 1222222 47899999977764 234444433333322 12 6899999999984
No 259
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.76 E-value=9.7e-09 Score=88.02 Aligned_cols=54 Identities=35% Similarity=0.479 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 58 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~ 58 (256)
+|.+|||||||+|+|++.....++... .||.....+.. .+| .|+||||+...+.
T Consensus 126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l 186 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGL 186 (245)
T ss_pred ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCC
Confidence 699999999999999997654444332 25655555554 233 7999999987653
No 260
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.74 E-value=1.4e-08 Score=79.55 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|..-||||||+-....... .-.....-....+.... +....++.||||.|..........|. ++.+.
T Consensus 19 LGEGCVGKtSLVLRy~EnkF-n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY---------RgSnG 88 (218)
T KOG0088|consen 19 LGEGCVGKTSLVLRYVENKF-NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY---------RGSNG 88 (218)
T ss_pred EcCCccchhHHHHHHHHhhc-chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE---------eCCCc
Confidence 57888999999977775432 11111000000111112 22345789999999876544443333 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
.|+|+++.+....+..+.++..|+.+.|.+ .-.++|.||.|+.+.+.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQ 135 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhh
Confidence 999999998556677789999999999988 67899999999853333
No 261
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=6.9e-08 Score=74.82 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEE--eeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVS--RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~--~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
||.+.+||+|++-+.++... .+.+-+ ...+..... ..-...++.+|||.|..........+ + ++++
T Consensus 27 iGnssvGKTSfl~ry~ddSF--t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay---y------Rgam 95 (193)
T KOG0093|consen 27 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY---Y------RGAM 95 (193)
T ss_pred EccCCccchhhhHHhhcccc--ccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH---h------hccc
Confidence 69999999999999998753 122211 111111111 11234688999999986532221111 1 6999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+|++++++.........+.+.-.|....-.+ .++|+|.||||+..
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDS 140 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCcc
Confidence 9999988876443344455555554443233 67999999999853
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=98.73 E-value=1e-07 Score=94.78 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeeeC----------CeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSKG----------GFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~~----------g~~v~liDTPG~~~ 55 (256)
+|..++|||||+++|++.......... +.|.........+. +..++++||||..+
T Consensus 25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~ 104 (836)
T PTZ00416 25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD 104 (836)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence 589999999999999975321111001 11111111122332 66799999999965
Q ss_pred CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+...+...+ ..+|++++|++... .+...+..+++.+.+.- .|.++++||+|+.
T Consensus 105 -------f~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 105 -------FSSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred -------HHHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence 222233333 58999999977664 36666777777666542 6899999999974
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.73 E-value=1e-07 Score=88.56 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHhCCCc--cc----------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERV--VT----------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~--~~----------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..++|||||+.+|+...- .. +.+ ..+.|........++++..++++||
T Consensus 13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt 92 (446)
T PTZ00141 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA 92 (446)
T ss_pred EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence 58899999999998875210 00 000 1123444445556778899999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
||.. ++...+...+ ..+|++++|++.+..-+ .....+.+..+.. .|- +++|+++||+|.
T Consensus 93 PGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~iiv~vNKmD~ 157 (446)
T PTZ00141 93 PGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQMIVCINKMDD 157 (446)
T ss_pred CChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence 9964 2333333332 58999999977664222 1334444444333 342 468899999995
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.73 E-value=2.7e-08 Score=81.00 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|++|+|||+|...|..... .....+. ++.. ...+ .+..+.+||+||...-. ...++.+. ..+.+.
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~--~~T~tS~--e~n~-~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~---~~~~~k 77 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKT--VPTVTSM--ENNI-AYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK---YLSNAK 77 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS-----B---S--SEEE-ECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---HHGGEE
T ss_pred EcCCCCCHHHHHHHHhcCCc--CCeeccc--cCCc-eEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---chhhCC
Confidence 59999999999999998742 1111111 2222 2223 56688999999986432 33443322 125789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcC----CcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFG----KQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g----~~~~~~~ivv~Tk~D~~~ 124 (256)
+|+||++.. .+..+-....+.|-.++- ..-..|++|+.||.|+..
T Consensus 78 ~IIfvvDSs--~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 78 GIIFVVDSS--TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEEETT--THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEEeCc--cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999995433 333333444444433321 122478999999999864
No 265
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.71 E-value=8.8e-08 Score=75.50 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|..|+||||+++.+.|+....++ .|...+....++++.++++||.-|.-.. ..+.+++- ...|+++
T Consensus 22 LGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~l----r~~W~nYf-----estdglI 88 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTL----RSYWKNYF-----ESTDGLI 88 (185)
T ss_pred EecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchh----HHHHHHhh-----hccCeEE
Confidence 589999999999999998743222 3455677788999999999999997532 23443332 4789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~ 123 (256)
||++..+.+.-++.. ..|++.+.++ +-.+++++.||.|+.
T Consensus 89 wvvDssD~~r~~e~~---~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECK---QELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEECchHHHHHHHH---HHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 997776533222323 3333333321 236899999999984
No 266
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=2.2e-08 Score=89.06 Aligned_cols=57 Identities=21% Similarity=0.441 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~ 60 (256)
||-++|||||+||+|.|...+.++..+++|...+...... .+.++||||+.-....+
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPKFDD 194 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCCccc
Confidence 6999999999999999999999999998888766544332 26899999998876655
No 267
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.67 E-value=3.7e-08 Score=89.03 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=51.3
Q ss_pred CCCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~ 74 (256)
+|.||||||||+|+|++.. .+.++..+++|....... . +..+.++||||+......... ..+.++......
T Consensus 160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~ 236 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKK 236 (360)
T ss_pred ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCC
Confidence 6999999999999999853 356777788887665443 3 223579999999875321110 011222222334
Q ss_pred CCcEEEEEEe
Q 025189 75 TIDVLLYADR 84 (256)
Q Consensus 75 ~~d~vL~v~~ 84 (256)
++..+.|+++
T Consensus 237 ~i~~~~~~l~ 246 (360)
T TIGR03597 237 EIKPKTYQLN 246 (360)
T ss_pred ccCceEEEeC
Confidence 6777777743
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.65 E-value=7.1e-08 Score=94.57 Aligned_cols=108 Identities=14% Similarity=0.220 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcc---------cccCC------CCCcceeE----EEEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV---------TVNSF------QSEALRPV----MVSRSKGGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~---------~~~~~------~~~t~~~~----~~~~~~~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..|+|||||+++|+...-+ ...++ .+.|.... ......++..+++|||||..+.. .
T Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~---~ 101 (720)
T TIGR00490 25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG---G 101 (720)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH---H
Confidence 588999999999999753110 00011 11122211 12245667899999999997643 2
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.....+ ..+|++|+|++... .....+..+++.+.+. + .+.++++||+|..
T Consensus 102 ~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~ 151 (720)
T TIGR00490 102 DVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE---N--VKPVLFINKVDRL 151 (720)
T ss_pred HHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc---C--CCEEEEEEChhcc
Confidence 222233 48999999977654 2444555555544332 1 5778999999974
No 269
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.64 E-value=2.1e-07 Score=86.39 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=81.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE-EEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM-VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~-~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.-||||||||-+|+.++. +.+.+..-..... ....-...+.+++||+.-.+ ......++++ .+|++
T Consensus 15 iGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~---~~~~l~~Eir------kA~vi 83 (625)
T KOG1707|consen 15 IGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD---DRLCLRKEIR------KADVI 83 (625)
T ss_pred ECCCCccHHHHHHHHHhhhc--cccccccCCccccCCccCcCcCceEEEecccccc---hhHHHHHHHh------hcCEE
Confidence 69999999999999999863 2222211111100 11222355679999984322 1233455664 89999
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189 80 LYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 132 (256)
Q Consensus 80 L~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~ 132 (256)
.+|+.+|+ ..++.....++-.+.+.+|+....|+|+|.||+|.......+.+.
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 99998887 336667788999999999988889999999999985433333333
No 270
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.63 E-value=2.4e-07 Score=85.17 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
++.+++|||||.. ++...+.... ..+|++++|++.+..-......+.+..+ +.++- +++++|+||+|
T Consensus 79 ~~~i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence 5689999999964 2333332222 3689999998777421133444444433 33332 57899999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
+.
T Consensus 146 l~ 147 (406)
T TIGR03680 146 LV 147 (406)
T ss_pred cC
Confidence 85
No 271
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.62 E-value=3.1e-07 Score=84.51 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=42.0
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
..+++|||||.. .+...+... ...+|++++|++.+..-........+..+.. .+- +++++|+||+|+
T Consensus 85 ~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 578999999953 222222211 1468999999777642113444445554432 231 578999999998
Q ss_pred C
Q 025189 123 C 123 (256)
Q Consensus 123 ~ 123 (256)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 5
No 272
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.59 E-value=4.9e-08 Score=80.12 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-Ce--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
||..++|||+++.+..... + ...+.++..+.......++ |. .+.+|||.|..+.+... -++=+..|
T Consensus 10 VGDga~GKT~ll~~~t~~~-f-p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR---------plsY~~td 78 (198)
T KOG0393|consen 10 VGDGAVGKTCLLISYTTNA-F-PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR---------PLSYPQTD 78 (198)
T ss_pred ECCCCcCceEEEEEeccCc-C-cccccCeEEccceEEEEecCCCEEEEeeeecCCCccccccc---------ccCCCCCC
Confidence 6999999999987776552 2 2223233333344455664 65 45799999998774321 11237899
Q ss_pred EEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+||+|+++++.. +...-..++.+++...+. .|+|+|.||.|+.
T Consensus 79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred EEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 999999998633 444456788888888755 7999999999985
No 273
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.58 E-value=7.4e-07 Score=69.61 Aligned_cols=117 Identities=12% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCC-cCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAG-YVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~-~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.-++|||+++..|+-.+.........+..+......+- ....+.++||.|+.++. ..... |+ .-+
T Consensus 15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprh-------y~--q~a 85 (198)
T KOG3883|consen 15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRH-------YF--QFA 85 (198)
T ss_pred ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHh-------Hh--ccC
Confidence 4778999999998877555434445555555555444432 23478999999998762 11222 22 468
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
|+|++|++.++.+..+-...+-+.|.+ +.+.--.+++++.|++|+.++..
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk-~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDK-HKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhh-ccccccccEEEEechhhcccchh
Confidence 999999887764321221222233333 23333468999999999865443
No 274
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=1e-07 Score=81.39 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-C--CCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcH------H-------
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN-S--FQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNY------Q------- 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~-~--~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~------~------- 62 (256)
||.||.|||||+++|++...-... . .+........+...-.+ .+++|+||.|+||--..++ +
T Consensus 48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFE 127 (406)
T KOG3859|consen 48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFE 127 (406)
T ss_pred eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHH
Confidence 699999999999999997542111 0 11111122222222223 3679999999998421111 1
Q ss_pred -HHH---HHHHhh---hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 63 -ALE---LIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 63 -~~~---~i~~~l---~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++ .|++.+ -+.++|++||.+...+..+...|.-.++.|.+. .++|-|+.|+|-.
T Consensus 128 aYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti 189 (406)
T KOG3859|consen 128 AYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh
Confidence 111 122222 246899999998888877888888888888776 6888899999864
No 275
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.56 E-value=1.1e-07 Score=75.07 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=77.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
||.+-||||||+..++....+..++. ....+......+ ....++.+|||.|........+.|. +..-
T Consensus 14 igdstvgkssll~~ft~gkfaelsdp-tvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy---------rnsv 83 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAELSDP-TVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY---------RNSV 83 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccccCCC-ccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh---------hccc
Confidence 69999999999999998876655531 111111100111 1235778999999865443333332 3556
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 132 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~ 132 (256)
.+|+|++++..+..+....+++.-+...+.....-+.+|.+|+|+...+..+.++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE 138 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE 138 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence 7888999988666677777777776666633334467788999986555555544
No 276
>PRK00098 GTPase RsgA; Reviewed
Probab=98.55 E-value=1.7e-07 Score=82.67 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~ 56 (256)
+|.+|||||||+|+|+|.....++.... +|+....+.....+ .++||||+...
T Consensus 170 ~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~~ 229 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSSF 229 (298)
T ss_pred ECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCcc
Confidence 6999999999999999986555444322 44444433332222 79999999864
No 277
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=73.24 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|-.++||||++|.++.... +..-..|.....+..+-+.+.+.+||.||.......-+.|- ++.++++
T Consensus 26 vGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWeryc---------R~v~aiv 93 (186)
T KOG0075|consen 26 VGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC---------RGVSAIV 93 (186)
T ss_pred EeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHh---------hcCcEEE
Confidence 57889999999999886432 11122344455666677788999999999865432222221 6999999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcc--cccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQI--WRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~--~~~~ivv~Tk~D~~ 123 (256)
||++..+.. .+. .-.+|...+.++. -.|++|+.||.|+.
T Consensus 94 Y~VDaad~~k~~~----sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 94 YVVDAADPDKLEA----SRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred EEeecCCcccchh----hHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 996655422 222 2223333333322 36899999999983
No 278
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.53 E-value=4.7e-07 Score=77.40 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---CcHHHHHHHHHhhhc--C
Q 025189 1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLN--K 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---~~~~~~~~i~~~l~~--~ 74 (256)
+|.|++|||||+|.++.... +..+. +.+..++......-|..+.++|.||++..+. ...+.-+..+.++.. .
T Consensus 142 ~g~SNVGKSSLln~~~r~k~~~~t~k--~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n 219 (320)
T KOG2486|consen 142 YGRSNVGKSSLLNDLVRVKNIADTSK--SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN 219 (320)
T ss_pred ecCCcccHHHHHhhhhhhhhhhhhcC--CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence 48999999999999998653 22222 1222233333333466789999999665432 222333334444432 2
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
-..+||++.. + ..+...|...++.+-+.- .|+.+|+||||..
T Consensus 220 Lv~~FLLvd~-s-v~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 220 LVRVFLLVDA-S-VPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred hheeeeeeec-c-CCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 3566677622 2 135555555555554442 7999999999973
No 279
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=9.4e-08 Score=86.56 Aligned_cols=53 Identities=32% Similarity=0.576 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~ 56 (256)
||.+|||||||||+|++. +...++..+++|......... +| ..++||||+...
T Consensus 166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~~--~~l~DTPGi~~~ 223 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-DG--SFLYDTPGIIHR 223 (365)
T ss_pred EcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-CC--cEEEECCCcccc
Confidence 699999999999999964 234567788888876554332 23 379999999643
No 280
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.52 E-value=2.2e-07 Score=81.47 Aligned_cols=54 Identities=30% Similarity=0.548 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~ 57 (256)
+|.+|+|||||+|+|+|.....++... .+|.....+.....+ .++||||+.+..
T Consensus 167 ~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 167 VGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 699999999999999997654444322 244444443333233 699999997643
No 281
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.51 E-value=7.9e-07 Score=88.65 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeee----------------CCeEEEEEe
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSK----------------GGFTLNIID 49 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~----------------~g~~v~liD 49 (256)
+|..++|||||+++|+........... +.|-.+......+ .+..++++|
T Consensus 25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 104 (843)
T PLN00116 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID 104 (843)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence 589999999999999865321111000 1111211112222 267789999
Q ss_pred CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|||..|. ..++...+ ..+|..++|++... .+......+++.+...- .++++++||+|..
T Consensus 105 tPGh~dF-------~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~iNK~D~~ 163 (843)
T PLN00116 105 SPGHVDF-------SSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLTVNKMDRC 163 (843)
T ss_pred CCCHHHH-------HHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEEEECCccc
Confidence 9998542 22333222 57899999977654 34455555665554432 7899999999975
No 282
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.49 E-value=1.4e-06 Score=80.02 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=46.8
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.||||||... .+...++++........+|.+++|++.. .........+.+.+.. ...-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~---~d~~lm~El~~i~~~~~p~e~lLVlda~---~Gq~a~~~a~~F~~~~-----~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHK---QEDSLFEEMLQVAEAIQPDNIIFVMDGS---IGQAAEAQAKAFKDSV-----DVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCc---chHHHHHHHHHHhhhcCCcEEEEEeccc---cChhHHHHHHHHHhcc-----CCcEEEEECcc
Confidence 56889999999743 3445556666554445789999994432 2333444555555543 46789999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 74
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.48 E-value=6.5e-07 Score=88.07 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc---------cCC------CCCcceeEEEEeee----CCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV---------NSF------QSEALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~---------~~~------~~~t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..++|||||+.+|+...-... .++ .+.|..+......+ .+..++++||||..+.. .
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~---~ 102 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG---G 102 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH---H
Confidence 58899999999999986432111 000 01122222112222 46789999999997632 2
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++... ........+++...+. + .+.++++||+|..
T Consensus 103 ----~~~~~l--~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 103 ----DVTRAM--RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ----HHHHHH--HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 222222 47899999977654 3555566666654333 2 4679999999974
No 284
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.47 E-value=3.3e-06 Score=78.50 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--------------c----------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--------------T----------VNS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..++|||||+-+|+...-. . +.+ ..+.|........+.+++.++++||
T Consensus 13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt 92 (447)
T PLN00043 13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDA 92 (447)
T ss_pred EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEEC
Confidence 588999999999888732100 0 000 1123444445556778899999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC------HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~------~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||.. ++...+...+ ..+|+.++|++.+...+. ....+.+.. ....|- +++++++||+|+.
T Consensus 93 PGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV~vNKmD~~ 158 (447)
T PLN00043 93 PGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMICCCNKMDAT 158 (447)
T ss_pred CCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEEEEEcccCC
Confidence 9964 3444444333 589999999877653232 222222222 222332 4789999999974
No 285
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5e-07 Score=70.52 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE--EEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM--VSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~--~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|+|||-|+..+..... .-. .+.|..... ....++| +++.||||.|....... .+.+. +++
T Consensus 15 iG~aGtGKSCLLh~Fie~kf-kDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV-------tRsYY--RGA 82 (214)
T KOG0086|consen 15 IGSAGTGKSCLLHQFIENKF-KDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV-------TRSYY--RGA 82 (214)
T ss_pred eccCCCChhHHHHHHHHhhh-ccc--ccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH-------HHHHh--ccc
Confidence 59999999999988886542 111 112222211 2233444 46789999998543322 22222 588
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 129 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~ 129 (256)
-..|+|+++......++...++...+.+-..+ .-++++.||.|+.+.++.+
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vt 133 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVT 133 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhh
Confidence 88899988886434455556666665554433 3456667888986444443
No 286
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=70.26 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc----C--C---CCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN----S--F---QSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGF 70 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~----~--~---~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~ 70 (256)
.|..|+||||++.++.......+. . . .++|...-....++++ ..+.++||||.....+.-+ .+.
T Consensus 16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~----~l~-- 89 (187)
T COG2229 16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE----ILS-- 89 (187)
T ss_pred EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH----HHh--
Confidence 488999999999999987532221 1 1 1233333344455555 8899999999864432221 111
Q ss_pred hhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 71 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 71 l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++....+++ +|+.+ .+..+..+++.+..... .|++|..||.|+.
T Consensus 90 ---~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~ 134 (187)
T COG2229 90 ---RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF 134 (187)
T ss_pred ---CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC
Confidence 567777666 34434 34466777777766543 6899999999995
No 287
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.46 E-value=7e-07 Score=80.32 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCc----C
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY----V 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~----~ 59 (256)
+|.+++|||||+|+|++...+.++.++.||..+......+.+ ..+.++|.||+..+.. .
T Consensus 8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl 87 (368)
T TIGR00092 8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL 87 (368)
T ss_pred ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence 699999999999999999865677888888877766555543 3578999999987543 3
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
....+..++ .+|++++|++..
T Consensus 88 gn~fL~~ir------~~d~l~hVvr~f 108 (368)
T TIGR00092 88 GNQFLANIR------EVDIIQHVVRCF 108 (368)
T ss_pred chHHHHHHH------hCCEEEEEEeCC
Confidence 346777775 789999998874
No 288
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.9e-07 Score=83.36 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=48.3
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+.++|.||++-+...+..+. +.| -.+|+|+||..... .++..+++++....+. .+++.|+.||+|..
T Consensus 207 DivliDsPGld~~se~tswid---~~c---ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~-----KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWID---SFC---LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE-----KPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHH---HHh---hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc-----CCcEEEEechhhhh
Confidence 468999999986654444333 223 38999999955553 4888889888877665 25677777888975
No 289
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.2e-07 Score=80.95 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee------------C------CeEEEEEeCCCCCCCCcC---
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------G------GFTLNIIDTPGLVEAGYV--- 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~------g~~v~liDTPG~~~~~~~--- 59 (256)
||.++||||||+|+++... +...+++.||-++......+ . -..+.++|.+|+-.+.+.
T Consensus 8 VGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG 86 (372)
T COG0012 8 VGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG 86 (372)
T ss_pred ecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence 6999999999999999988 67888998988876544321 1 125689999999876543
Q ss_pred -cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 60 -NYQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 60 -~~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
..+.+..|+ ..|+|+.|++..
T Consensus 87 LGNkFL~~IR------evdaI~hVVr~f 108 (372)
T COG0012 87 LGNKFLDNIR------EVDAIIHVVRCF 108 (372)
T ss_pred cchHHHHhhh------hcCeEEEEEEec
Confidence 347888885 899999998775
No 290
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.44 E-value=6.6e-08 Score=73.73 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.|++||+-|+-.+-... +..+.+-++ ..+........++ +++.+|||.|..........|. +.+|
T Consensus 3 lgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy---------rda~ 72 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY---------RDAD 72 (192)
T ss_pred cccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh---------cccc
Confidence 6999999998864443321 222222221 1111122233444 4678999999876655554444 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 126 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~ 126 (256)
++|+++++......++-+.++.+|.+.-.+. ..++++.||||+.+.+
T Consensus 73 allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er 119 (192)
T KOG0083|consen 73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHER 119 (192)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhh
Confidence 9999999987545667778888888775444 5688999999996433
No 291
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.41 E-value=4.8e-07 Score=68.39 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
||.+|+||+||.|+|.|+..- ...| +. .+++.. -.|||||-.- .+..+...+.. ...++|+++
T Consensus 7 vG~~gcGKTtL~q~L~G~~~l-----ykKT---QA--ve~~d~--~~IDTPGEy~---~~~~~Y~aL~t--t~~dadvi~ 69 (148)
T COG4917 7 VGQVGCGKTTLFQSLYGNDTL-----YKKT---QA--VEFNDK--GDIDTPGEYF---EHPRWYHALIT--TLQDADVII 69 (148)
T ss_pred ecccccCchhHHHHhhcchhh-----hccc---ce--eeccCc--cccCCchhhh---hhhHHHHHHHH--Hhhccceee
Confidence 699999999999999998642 1112 22 223222 3599999763 33333333322 226899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|..+++.. ..+-..+..++ -+++|=|+||+|+.
T Consensus 70 ~v~~and~~-----s~f~p~f~~~~----~k~vIgvVTK~DLa 103 (148)
T COG4917 70 YVHAANDPE-----SRFPPGFLDIG----VKKVIGVVTKADLA 103 (148)
T ss_pred eeecccCcc-----ccCCccccccc----ccceEEEEeccccc
Confidence 998877531 11111222333 26799999999995
No 292
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.35 E-value=5.6e-07 Score=82.62 Aligned_cols=60 Identities=32% Similarity=0.430 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
||-++|||||+||+|.|.+...||..++.|++.+....+ -.+.+.|.||+--+++....+
T Consensus 320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~~r~ 379 (562)
T KOG1424|consen 320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSPTRA 379 (562)
T ss_pred ecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCCchHH
Confidence 689999999999999999988899888888877765543 345899999999887765433
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.35 E-value=5.1e-06 Score=74.10 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHH-HHhhcCCcccccEEEEEec
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA-VTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~-l~~~~g~~~~~~~ivv~Tk 119 (256)
.|..+.|+||+|.+.... . +. ..+|++++|.... ...+.+..+. +.+. .-++|+||
T Consensus 147 ~g~d~viieT~Gv~qs~~---~----i~-----~~aD~vlvv~~p~----~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 147 AGYDVILVETVGVGQSET---A----VA-----GMVDFFLLLQLPG----AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred cCCCEEEEECCCCccchh---H----HH-----HhCCEEEEEecCC----chHHHHHHHhhhhhh-------hheEEeeh
Confidence 467889999999985421 1 11 3689999994322 1233333332 3332 23899999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
+|+.
T Consensus 204 aDl~ 207 (332)
T PRK09435 204 ADGD 207 (332)
T ss_pred hccc
Confidence 9985
No 294
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=3.9e-06 Score=75.52 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=94.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc-------------cc---cc--------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERV-------------VT---VN--------------SFQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-------------~~---~~--------------~~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|...+|||||+-.|+-+.- +. -+ ...+.|........+-+-..++|+|+
T Consensus 13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDa 92 (428)
T COG5256 13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDA 92 (428)
T ss_pred EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeC
Confidence 58899999999977774300 00 00 01122333333344455667899999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
||..|. +.+.|. -...+|+-++|++.....+ ..+.+ ---.|.+.+|- .+.||++||+|..+
T Consensus 93 PGHrdF------vknmIt---GasqAD~aVLVV~a~~~efE~g~~~~gQtr-EH~~La~tlGi---~~lIVavNKMD~v~ 159 (428)
T COG5256 93 PGHRDF------VKNMIT---GASQADVAVLVVDARDGEFEAGFGVGGQTR-EHAFLARTLGI---KQLIVAVNKMDLVS 159 (428)
T ss_pred CchHHH------HHHhhc---chhhccEEEEEEECCCCccccccccCCchh-HHHHHHHhcCC---ceEEEEEEcccccc
Confidence 996432 111221 1247899999977765421 11122 22345566664 79999999999864
Q ss_pred CCCCchhHhhhhccHHHHHHHHHhcccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc--hHHHHHHHHHhhhC
Q 025189 125 PDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW--IPTLVKGITDVATN 202 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~~i~~~~~ 202 (256)
++-+.|.+- ...+..+++.++ |.... ...||+.-....+..-.. ....| =+.|++++-..-++
T Consensus 160 ---wde~rf~ei-~~~v~~l~k~~G-~~~~~--v~FIPiSg~~G~Nl~~~s--------~~~pWY~GpTLleaLd~~~~p 224 (428)
T COG5256 160 ---WDEERFEEI-VSEVSKLLKMVG-YNPKD--VPFIPISGFKGDNLTKKS--------ENMPWYKGPTLLEALDQLEPP 224 (428)
T ss_pred ---cCHHHHHHH-HHHHHHHHHHcC-CCccC--CeEEecccccCCcccccC--------cCCcCccCChHHHHHhccCCC
Confidence 333344332 223444554443 43221 124666333222211111 13458 78899988766555
Q ss_pred C
Q 025189 203 K 203 (256)
Q Consensus 203 ~ 203 (256)
+
T Consensus 225 ~ 225 (428)
T COG5256 225 E 225 (428)
T ss_pred C
Confidence 5
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.32 E-value=6.9e-06 Score=74.88 Aligned_cols=169 Identities=16% Similarity=0.154 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHhCCCccccc------------CC---CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189 5 GVGKSSTVNSVIGERVVTVN------------SF---QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 5 G~GKSSliN~l~g~~~~~~~------------~~---~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~ 69 (256)
-.|||||+..|+.+.-..-. +. .+.|--.......|+|..++|+||||.-|.+..-+.++
T Consensus 15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl----- 89 (603)
T COG1217 15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVL----- 89 (603)
T ss_pred cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhh-----
Confidence 47999999999976321111 00 01122222234578899999999999998765544444
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhc
Q 025189 70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGA 149 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 149 (256)
.-.|.+|++++.....+-+.-.-+-++|... -+-|||+||.|.. . ..+++.+. +.+--+++-.+
T Consensus 90 ----~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g------L~PIVVvNKiDrp--~-Arp~~Vvd---~vfDLf~~L~A 153 (603)
T COG1217 90 ----SMVDGVLLLVDASEGPMPQTRFVLKKALALG------LKPIVVINKIDRP--D-ARPDEVVD---EVFDLFVELGA 153 (603)
T ss_pred ----hhcceEEEEEEcccCCCCchhhhHHHHHHcC------CCcEEEEeCCCCC--C-CCHHHHHH---HHHHHHHHhCC
Confidence 3568888886665544433322233444443 3558889999973 2 23343332 23333443333
Q ss_pred ccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCC
Q 025189 150 GLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKS 204 (256)
Q Consensus 150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~ 204 (256)
..... ..|+.-.+......+ ....+..+-+..|++++++++|.-+
T Consensus 154 ~deQL-----dFPivYAS~~~G~a~-----~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 154 TDEQL-----DFPIVYASARNGTAS-----LDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ChhhC-----CCcEEEeeccCceec-----cCccccccchhHHHHHHHHhCCCCC
Confidence 22221 244432222211111 1122223349999999999998753
No 296
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.31 E-value=7.4e-07 Score=75.23 Aligned_cols=99 Identities=22% Similarity=0.386 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|-+.||||||+..|++..- ....++.+|..|......++|-++.+.|.||+.++....+. -.+.|. ..+.+|+|
T Consensus 68 IGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia---vArtaDli 143 (364)
T KOG1486|consen 68 IGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA---VARTADLI 143 (364)
T ss_pred ecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEE---EeecccEE
Confidence 68999999999999998643 34456778888888888999999999999999987544331 111111 22589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFG 106 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g 106 (256)
|.| +|+++ .+..+.+++.-.+..|
T Consensus 144 lMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 144 LMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred EEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 999 66533 3444556654444434
No 297
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.5e-06 Score=79.02 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHhCCCccc--------------ccCCCCCcceeEEEEeeeCC---eEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189 5 GVGKSSTVNSVIGERVVT--------------VNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELI 67 (256)
Q Consensus 5 G~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~g---~~v~liDTPG~~~~~~~~~~~~~~i 67 (256)
-.|||||...|+...-+. +..-.+.|...+.....+.+ .-+++|||||.-|.+..-.. .+
T Consensus 70 DHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsR---sl 146 (650)
T KOG0462|consen 70 DHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSR---SL 146 (650)
T ss_pred cCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehe---hh
Confidence 479999999988642211 11112445566666666655 78899999999886533222 22
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.-+|.+|+|++.... ... +.+.-+...|..+ -.+|.|+||.|+.
T Consensus 147 ------aac~G~lLvVDA~qG-vqA---QT~anf~lAfe~~--L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 147 ------AACDGALLVVDASQG-VQA---QTVANFYLAFEAG--LAIIPVLNKIDLP 190 (650)
T ss_pred ------hhcCceEEEEEcCcC-chH---HHHHHHHHHHHcC--CeEEEeeeccCCC
Confidence 367889999655532 222 2222233333322 5789999999984
No 298
>PTZ00099 rab6; Provisional
Probab=98.29 E-value=9.5e-06 Score=66.01 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
..++.||||||..........+ + .++|++|+|+++++..-.+....++..+....+.+ .++++|.||+|
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~-------~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~D 96 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSY-------I--RDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKTD 96 (176)
T ss_pred EEEEEEEECCChHHhhhccHHH-------h--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcc
Confidence 3577899999986543222222 2 68999999998886321223345666665554433 68899999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
+.
T Consensus 97 L~ 98 (176)
T PTZ00099 97 LG 98 (176)
T ss_pred cc
Confidence 85
No 299
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=2.9e-06 Score=65.42 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.-|+|||-|+..+..... ..+++.+ ..+.-....++.| .++.+|||.|........ +.+. +++-
T Consensus 17 igdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfravt-------rsyy--rgaa 85 (215)
T KOG0097|consen 17 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT-------RSYY--RGAA 85 (215)
T ss_pred EccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH-------HHHh--cccc
Confidence 58999999999998887643 2232211 1111122234444 467899999985433222 2222 5788
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 132 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~ 132 (256)
..|.|+++...+.......++..-+..-..+ --++++.||+|+...++..+++
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence 8899988885323333333443333332222 3356677999986666666654
No 300
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.1e-05 Score=74.79 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT-- 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~-- 75 (256)
||.--.|||||+..|-+.+++. +...+-|++.-.++...+ ...++++||||.. ....++. ++
T Consensus 11 mGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe--------AFt~mRa----RGa~ 77 (509)
T COG0532 11 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE--------AFTAMRA----RGAS 77 (509)
T ss_pred eCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH--------HHHHHHh----cCCc
Confidence 5777899999999999988753 334567777777777764 4689999999974 3334432 33
Q ss_pred -CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 -IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 -~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.|.++||+.+|+ -+..+..+.++.++..- .|++|..||.|..
T Consensus 78 vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~ 120 (509)
T COG0532 78 VTDIAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP 120 (509)
T ss_pred cccEEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence 699999999987 35555555555554442 8999999999985
No 301
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.7e-06 Score=77.91 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=72.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
||.--.|||||+.+|-+..++. +...+.|++.-.+.... .|..+++.||||.- ....|+.- -..-.|.+
T Consensus 159 MGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa--------AF~aMRaR-GA~vtDIv 228 (683)
T KOG1145|consen 159 MGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPGHA--------AFSAMRAR-GANVTDIV 228 (683)
T ss_pred eecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCcHH--------HHHHHHhc-cCccccEE
Confidence 5777899999999999988753 33455666665555444 68999999999973 33344320 01347999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
++|+..|+ .+-.+ .++.|+..-..+ .|+++.+||+|.
T Consensus 229 VLVVAadD-GVmpQ---T~EaIkhAk~A~--VpiVvAinKiDk 265 (683)
T KOG1145|consen 229 VLVVAADD-GVMPQ---TLEAIKHAKSAN--VPIVVAINKIDK 265 (683)
T ss_pred EEEEEccC-CccHh---HHHHHHHHHhcC--CCEEEEEeccCC
Confidence 99988887 34444 444444433222 899999999996
No 302
>PRK13768 GTPase; Provisional
Probab=98.20 E-value=3.5e-06 Score=72.54 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
..+.+|||||..+....... ...+.+.+.....+++++|++... ..+..+......+....-....+++++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~-~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRES-GRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHH-HHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 36899999998764322211 112222222123899999955532 2344454444333211100123899999999998
Q ss_pred CC
Q 025189 123 CP 124 (256)
Q Consensus 123 ~~ 124 (256)
..
T Consensus 175 ~~ 176 (253)
T PRK13768 175 LS 176 (253)
T ss_pred cC
Confidence 63
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.18 E-value=4.2e-07 Score=75.29 Aligned_cols=72 Identities=24% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
++..+.+|||||... .+.+.++++++++....++-+++|++.+. ..++...+....+.+ ...=+++||.
T Consensus 82 ~~~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSP---RDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSS---THHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEEST
T ss_pred cCCCEEEEecCCcch---hhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEee
Confidence 346789999999853 34455566666554447888889966653 244444555555555 3446779999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 151 Det 153 (196)
T PF00448_consen 151 DET 153 (196)
T ss_dssp TSS
T ss_pred cCC
Confidence 975
No 304
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.14 E-value=8.5e-06 Score=82.11 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC------------------eEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189 6 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG------------------FTLNIIDTPGLVEAGYVNYQALELI 67 (256)
Q Consensus 6 ~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~liDTPG~~~~~~~~~~~~~~i 67 (256)
++||||+.+|.+.+++. +...+-|++.-.+....+. ..+++|||||..+.. ...
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~-------~lr 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT-------SLR 543 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH-------HHH
Confidence 57999999999988743 3334445544433333221 127999999964321 111
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
... ...+|++++|+++++ .+.......++.+... + .|+++|+||+|+.
T Consensus 544 ~~g--~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~ 591 (1049)
T PRK14845 544 KRG--GSLADLAVLVVDINE-GFKPQTIEAINILRQY-K----TPFVVAANKIDLI 591 (1049)
T ss_pred Hhh--cccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-C----CCEEEEEECCCCc
Confidence 111 146899999988775 3566666667666543 2 6899999999985
No 305
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.13 E-value=3.8e-06 Score=72.98 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI 67 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i 67 (256)
+|-+|+|||||||++... ..+.++..++.|..............+-++||||+..++..+.+-.-.+
T Consensus 149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhh
Confidence 689999999999998753 4567777888887766544445666789999999999987776544333
No 306
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.13 E-value=4.2e-06 Score=73.46 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--------------C---eEEEEEeCCCCCCCCcCc---
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--------------G---FTLNIIDTPGLVEAGYVN--- 60 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--------------g---~~v~liDTPG~~~~~~~~--- 60 (256)
||.++|||||++|+|+..... ..+++.||-++......+. + -.++++|..|+-.+.+..
T Consensus 26 VGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL 104 (391)
T KOG1491|consen 26 VGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL 104 (391)
T ss_pred eeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence 699999999999999998764 7788888888766544322 1 157999999998765433
Q ss_pred -HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 61 -YQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 61 -~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
...+..|+ .+|+++-|++..
T Consensus 105 GN~FLs~iR------~vDaifhVVr~f 125 (391)
T KOG1491|consen 105 GNKFLSHIR------HVDAIFHVVRAF 125 (391)
T ss_pred hHHHHHhhh------hccceeEEEEec
Confidence 36777775 789999887664
No 307
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.12 E-value=2.2e-05 Score=73.13 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
..++++||||.. .+.+.+...+ ..+|++++|++.+..-......+.+. +.+.+|- +++++|+||+|+
T Consensus 117 ~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEEecccc
Confidence 478999999952 3444433322 47899999977764212232233333 2334443 689999999998
Q ss_pred C
Q 025189 123 C 123 (256)
Q Consensus 123 ~ 123 (256)
.
T Consensus 184 v 184 (460)
T PTZ00327 184 V 184 (460)
T ss_pred c
Confidence 5
No 308
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=3e-06 Score=76.68 Aligned_cols=71 Identities=17% Similarity=0.067 Sum_probs=46.1
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.||||||-.. .+...+.++.+.+....+|.+++| +++..-......+++.+.. + ...=+++||.|
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~-~-----~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKD-I-----HIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcC-C-----CCCEEEEEccc
Confidence 45789999999853 445566677766655578888888 4442222233455554443 2 45678899999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 389 ET 390 (436)
T PRK11889 389 ET 390 (436)
T ss_pred CC
Confidence 75
No 309
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.7e-05 Score=70.48 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=46.1
Q ss_pred EEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 45 LNIIDTPGLVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 45 v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
++||||||+.+..... ......+.=| ..++|.|+++++.--...+++-.+++..|+ |.+ ..+-||+||+
T Consensus 149 vtiVdtPGILsgeKQrisR~ydF~~v~~WF--aeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dkiRVVLNKA 221 (532)
T KOG1954|consen 149 VTIVDTPGILSGEKQRISRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DKIRVVLNKA 221 (532)
T ss_pred eeeeccCcccccchhcccccCChHHHHHHH--HHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ceeEEEeccc
Confidence 6999999999865331 1111122111 158999999955443335556566665554 555 7889999999
Q ss_pred cCCC
Q 025189 121 QLCP 124 (256)
Q Consensus 121 D~~~ 124 (256)
|..+
T Consensus 222 DqVd 225 (532)
T KOG1954|consen 222 DQVD 225 (532)
T ss_pred cccC
Confidence 9753
No 310
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=1.1e-06 Score=70.32 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|..+|||||+|.+.+..- +..+...+..........++ ..+.+.+|||.|..+.+...+.|. +++.+
T Consensus 26 vGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy---------rgaqa 95 (246)
T KOG4252|consen 26 VGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY---------RGAQA 95 (246)
T ss_pred ECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh---------ccccc
Confidence 5889999999999988542 11111111111111111222 234557899999876554433333 68889
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.++|++-.+....+....+.+.+....++ .|+++|-||.|+.+
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVE 138 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence 99998777633556677888888887766 89999999999863
No 311
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.4e-05 Score=64.35 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|--|+||||+++.|--.+...+ ..|.....-..++.+..+++||.-|.......-..|. ...++++
T Consensus 23 lGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~---------~~t~~lI 89 (181)
T KOG0070|consen 23 VGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF---------QNTQGLI 89 (181)
T ss_pred EeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCcccccchhhhc---------cCCcEEE
Confidence 57889999999988876654333 2233344445677899999999999854332222222 5789999
Q ss_pred EEEeCCC-CCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccC
Q 025189 81 YADRLDA-YRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQL 122 (256)
Q Consensus 81 ~v~~~d~-~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~ 122 (256)
||++-.+ .|+.+ .-+.+..++... ...++++..||-|+
T Consensus 90 fVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~ 130 (181)
T KOG0070|consen 90 FVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDL 130 (181)
T ss_pred EEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhc
Confidence 9954443 12322 333344443322 24688999999998
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=2e-05 Score=71.27 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=42.3
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcc---cccEEEE
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI---WRKSLLV 116 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~---~~~~ivv 116 (256)
+.+..+.+|||||.... +....+.+........++-.++|++... -.+.-.++++.+....+... ....=+|
T Consensus 213 l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts--~~~~l~evi~~f~~~~~~p~~~~~~~~~~I 287 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATS--HGDTLNEVVQAYRSAAGQPKAALPDLAGCI 287 (374)
T ss_pred hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCcc--ChHHHHHHHHHHHHhhcccccccCCCCEEE
Confidence 34668899999998643 3334444443222234455667744432 12233345555555433210 0135688
Q ss_pred EecccCC
Q 025189 117 LTHAQLC 123 (256)
Q Consensus 117 ~Tk~D~~ 123 (256)
+||.|..
T Consensus 288 ~TKlDEt 294 (374)
T PRK14722 288 LTKLDEA 294 (374)
T ss_pred EeccccC
Confidence 8999975
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=4.8e-05 Score=68.74 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.||||||... .+.+.+.+++.+.....+|.+++| ++.. ... .++.+.+.. |.. ....-+++||.|
T Consensus 285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~~--~d~~~i~~~-f~~--l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFT--FSSG-MKS--ADVMTILPK-LAE--IPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCc---cCHHHHHHHHHHhhccCCceEEEE--CCCc-ccH--HHHHHHHHh-cCc--CCCCEEEEEccc
Confidence 46889999999854 445666677766544567888888 4431 222 223332222 322 145678899999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 75
No 314
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.01 E-value=3.7e-05 Score=79.34 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-C-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc----CcHH----HH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-F-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY----VNYQ----AL 64 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~----~~~~----~~ 64 (256)
||++|+||||+++.. |-.. +... . .+.|.. |..-+ ...-+++||+|..-... .+.. .+
T Consensus 117 iG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~---c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 117 IGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRN---CDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred ECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcc---cceEe-cCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 699999999999876 5432 2211 0 011221 22112 22346999999765432 2222 22
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCC-CCHHH--------HHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 65 ELIKGFLLNKTIDVLLYADRLDAYR-VDDLD--------RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 65 ~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~--------~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+++.=....+|.||+++++++-- .++++ ..-++.+.+.+|-. .|++||+||+|+.
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence 2222221235799999998887421 12222 23345566667655 8999999999975
No 315
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.00 E-value=5e-05 Score=70.56 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCCCCcC------cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189 44 TLNIIDTPGLVEAGYV------NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~------~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~ 117 (256)
.++++|.||+..+-.. .+.+.+.-+.++ ..+++|++|+. +.+++.+-..+-..+.++=+.+ +++|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~G--rRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHG--RRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCC--CeeEEEE
Confidence 4589999999875221 122333333333 58999999954 4355444333334444443333 8999999
Q ss_pred ecccCC
Q 025189 118 THAQLC 123 (256)
Q Consensus 118 Tk~D~~ 123 (256)
||.|+.
T Consensus 487 TKVDlA 492 (980)
T KOG0447|consen 487 TKVDLA 492 (980)
T ss_pred eecchh
Confidence 999985
No 316
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2.4e-06 Score=67.16 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cccCCC--CCcceeEEEEe-------eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVNSFQ--SEALRPVMVSR-------SKGGFTLNIIDTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~~~~--~~t~~~~~~~~-------~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~ 69 (256)
+|.+||||+|++-..+..... .++... ...++ ..+.. ......+.+|||.|........ ..
T Consensus 15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr-vvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT-------TA 86 (219)
T KOG0081|consen 15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR-VVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT-------TA 86 (219)
T ss_pred hccCCCCceEEEEEecCCcccceeEEEeecccccce-EEEeccCCCCCCcceEEEEeeeccccHHHHHHHH-------HH
Confidence 599999999998766654320 011100 00011 11111 1112356899999985432221 11
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh-cCCcccccEEEEEecccCCC
Q 025189 70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~-~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+. +.+-.||+++++......-+...++.+|+-. .-++ .-+++..||+|+.+
T Consensus 87 Ff--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 87 FF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLED 138 (219)
T ss_pred HH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhh
Confidence 22 4677889998888655445667777777654 2333 56889999999853
No 317
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=3.8e-05 Score=63.43 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh-cCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL-NKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~v 79 (256)
+|.+++|||+|+-.|..... ...+ +..++......++.-.+++||.||-.. ....+.++++ ...+-+|
T Consensus 44 ~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 44 VGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred EecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHHHccccccceeE
Confidence 59999999999977776532 1111 222333333444555589999999742 2223333332 2367788
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcC----CcccccEEEEEecccCCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFG----KQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g----~~~~~~~ivv~Tk~D~~~~ 125 (256)
+|| +|+..+..+-....+.+-.+.- ..-..|+++.-||.|+...
T Consensus 113 VFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 113 VFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 898 5554555555555555444332 2224689999999998644
No 318
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=69.13 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (256)
||-|++|||||||+|++..+..... -..|.++..+.... .|..+.+.||-||... ........+...| .-..+|+
T Consensus 184 VGYTNaGKsTLikaLT~Aal~p~dr-LFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATLeeVaeadl 260 (410)
T KOG0410|consen 184 VGYTNAGKSTLIKALTKAALYPNDR-LFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATLEEVAEADL 260 (410)
T ss_pred EeecCccHHHHHHHHHhhhcCccch-hheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHHHHHhhcce
Confidence 5889999999999999765533222 23344555555544 4778899999999853 1111111221111 1148999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~ 123 (256)
+|.|.+++...........+..+.++-= .....+++=|-||.|..
T Consensus 261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 9999887753344444456666665521 12245677788888864
No 319
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.94 E-value=2.1e-05 Score=68.40 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=44.9
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh------cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i 114 (256)
.+..+.+|||||.... +...+++++.+.. ...+|.+++|++... ...+......+.+.. ...-
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence 4578899999998653 4444444444331 234899999966642 333333344444433 3568
Q ss_pred EEEecccCC
Q 025189 115 LVLTHAQLC 123 (256)
Q Consensus 115 vv~Tk~D~~ 123 (256)
+|+||.|..
T Consensus 222 ~IlTKlDe~ 230 (272)
T TIGR00064 222 IILTKLDGT 230 (272)
T ss_pred EEEEccCCC
Confidence 999999975
No 320
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.93 E-value=5.7e-06 Score=70.61 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHH---HHHHHhhcCCcccccEEEEEecc
Q 025189 44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI---IKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~---~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+.++||||..+.-... .....+-+.+.....-+++++ +|..++.+...-+ +-.+.-++.- .-|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeecc
Confidence 57999999998643222 233344444433334455666 4554544422211 1122222211 27999999999
Q ss_pred cCCC
Q 025189 121 QLCP 124 (256)
Q Consensus 121 D~~~ 124 (256)
|+..
T Consensus 167 Dl~~ 170 (238)
T PF03029_consen 167 DLLS 170 (238)
T ss_dssp GGS-
T ss_pred Cccc
Confidence 9963
No 321
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.92 E-value=2.2e-05 Score=71.00 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
....+.+|||.|-. ..+...+++++.++......-+.+|++.+ .-.+.-+.+++.+... ..--+++||.
T Consensus 280 ~~~d~ILVDTaGrs---~~D~~~i~el~~~~~~~~~i~~~Lvlsat--~K~~dlkei~~~f~~~------~i~~~I~TKl 348 (407)
T COG1419 280 RDCDVILVDTAGRS---QYDKEKIEELKELIDVSHSIEVYLVLSAT--TKYEDLKEIIKQFSLF------PIDGLIFTKL 348 (407)
T ss_pred hcCCEEEEeCCCCC---ccCHHHHHHHHHHHhccccceEEEEEecC--cchHHHHHHHHHhccC------CcceeEEEcc
Confidence 35578999999984 56777888888877443333344453443 2233334444444333 4456788999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|.+
T Consensus 349 DET 351 (407)
T COG1419 349 DET 351 (407)
T ss_pred ccc
Confidence 975
No 322
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=3.9e-05 Score=60.90 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|--++|||||++.|-....+.. ..|.+|..-...++|.+++.+|.-|-. ++.+..+.|+ +.+|+++
T Consensus 26 lGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf--~~v~~iv 92 (193)
T KOG0077|consen 26 LGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF--PQVDAIV 92 (193)
T ss_pred EeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--hhhceeE
Confidence 47789999999999887765322 234455555678999999999999864 3334445555 6889999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|.+++-+.....+.+.-++.+... -.-.|.|++++.||.|..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIP 134 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCC
Confidence 885554322122222233322221 011368999999999984
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=5e-05 Score=73.83 Aligned_cols=108 Identities=12% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cccCCC---------------CCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVNSFQ---------------SEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQ 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~~~~---------------~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~ 62 (256)
+|...+|||||.-+|+-..-. ..+... +.|-.....+..+.+ ..+++|||||.-|... +
T Consensus 16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~---E 92 (697)
T COG0480 16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTI---E 92 (697)
T ss_pred EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHH---H
Confidence 356789999999888753210 011111 223334445667886 9999999999987642 2
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+...+ +-.|..+.|++... .+......++++..+.- .|.++++||+|..
T Consensus 93 V~rsl------rvlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 93 VERSL------RVLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred HHHHH------HhhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 33333 35788888866665 34555556666655543 7999999999975
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=97.86 E-value=3.8e-05 Score=68.69 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=43.9
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.||||+|.... +...+..++.....-.+|.+++|++... ........+.+.+.. ...-+++||.|
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence 567899999998642 3445555555443347889999954432 222233334443333 45688999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 291 ~~ 292 (336)
T PRK14974 291 AD 292 (336)
T ss_pred CC
Confidence 85
No 325
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=0.00016 Score=64.29 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~ 117 (256)
.+..+.||||||........-+-++.+.+.+. ...+|-+++|++... ......-.....+.. ...-+|+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~~giIl 266 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GLTGIIL 266 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CCCEEEE
Confidence 45678999999986533221122223222211 235788888855553 222222223333322 4668999
Q ss_pred ecccCC
Q 025189 118 THAQLC 123 (256)
Q Consensus 118 Tk~D~~ 123 (256)
||.|..
T Consensus 267 TKlD~t 272 (318)
T PRK10416 267 TKLDGT 272 (318)
T ss_pred ECCCCC
Confidence 999965
No 326
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=3.8e-05 Score=70.58 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.+|||+|... .+....+.++.+......+-.++|++.. . ... .+..+...|.. ....=+++||.
T Consensus 268 ~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at--~-~~~---~~~~~~~~f~~--~~~~~~I~TKl 336 (420)
T PRK14721 268 RGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNAT--S-SGD---TLDEVISAYQG--HGIHGCIITKV 336 (420)
T ss_pred cCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCC--C-CHH---HHHHHHHHhcC--CCCCEEEEEee
Confidence 455779999999853 2344555555443223455566774433 2 122 22233333332 14567889999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 337 DEt 339 (420)
T PRK14721 337 DEA 339 (420)
T ss_pred eCC
Confidence 975
No 327
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00025 Score=62.87 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=65.1
Q ss_pred CCCCCCHHHHHHHHhCCCccc----------ccC----------------------CCCCcceeEEEEeeeCCeEEEEEe
Q 025189 2 GKGGVGKSSTVNSVIGERVVT----------VNS----------------------FQSEALRPVMVSRSKGGFTLNIID 49 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~----------~~~----------------------~~~~t~~~~~~~~~~~g~~v~liD 49 (256)
|.---||||||-.|+...... .|. -++.|-+..+....-+.+++.|.|
T Consensus 13 GSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiAD 92 (431)
T COG2895 13 GSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIAD 92 (431)
T ss_pred ccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEec
Confidence 566679999999998752210 110 011222322223334577899999
Q ss_pred CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189 50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 126 (256)
Q Consensus 50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~ 126 (256)
|||.. +|.+++.. -...+|+.+++ +|+.. +-++. +--..|...+|- +|+++.+||+|+.+-+
T Consensus 93 TPGHe-------QYTRNMaT--GASTadlAIlL--VDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVNKmDLvdy~ 155 (431)
T COG2895 93 TPGHE-------QYTRNMAT--GASTADLAILL--VDARKGVLEQT-RRHSFIASLLGI---RHVVVAVNKMDLVDYS 155 (431)
T ss_pred CCcHH-------HHhhhhhc--ccccccEEEEE--EecchhhHHHh-HHHHHHHHHhCC---cEEEEEEeeecccccC
Confidence 99974 45555542 11468888888 45422 22222 222345566665 7999999999996433
No 328
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=4.2e-05 Score=74.72 Aligned_cols=75 Identities=17% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||||... .+....+.++.......++-+++|++.. .-.+.-.++++.+....+. ...=+|+||.
T Consensus 262 ~~~D~VLIDTAGRs~---~d~~l~eel~~l~~~~~p~e~~LVLsAt--~~~~~l~~i~~~f~~~~~~---~i~glIlTKL 333 (767)
T PRK14723 262 GDKHLVLIDTVGMSQ---RDRNVSEQIAMLCGVGRPVRRLLLLNAA--SHGDTLNEVVHAYRHGAGE---DVDGCIITKL 333 (767)
T ss_pred cCCCEEEEeCCCCCc---cCHHHHHHHHHHhccCCCCeEEEEECCC--CcHHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence 355789999999854 3344445554433334577778884433 2111222344444332221 2456889999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 334 DEt 336 (767)
T PRK14723 334 DEA 336 (767)
T ss_pred CCC
Confidence 975
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.80 E-value=0.00012 Score=64.53 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.|..+.|+||||.+.... . .+ ..+|.++++.... ..++-......+.+ ++.++|+||+
T Consensus 125 ~g~D~viidT~G~~~~e~---~---i~------~~aD~i~vv~~~~---~~~el~~~~~~l~~-------~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV---D---IA------NMADTFVVVTIPG---TGDDLQGIKAGLME-------IADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCchhhh---H---HH------HhhceEEEEecCC---ccHHHHHHHHHHhh-------hccEEEEEcc
Confidence 467889999999874321 1 12 3578888873221 11222222222221 5779999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|+.
T Consensus 183 Dl~ 185 (300)
T TIGR00750 183 DGE 185 (300)
T ss_pred ccc
Confidence 985
No 330
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.78 E-value=3.8e-05 Score=65.87 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCCCCC---cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHH---HhhcCCcccccEEEE
Q 025189 43 FTLNIIDTPGLVEAG---YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV---TGTFGKQIWRKSLLV 116 (256)
Q Consensus 43 ~~v~liDTPG~~~~~---~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l---~~~~g~~~~~~~ivv 116 (256)
.+..+|||||..+.- .+..-+.+.++ ...+-++.|| +|..|.+... .++.-+ .+++-+ ..-|+|+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la----ss~ptvv~Yv--vDt~rs~~p~-tFMSNMlYAcSilyk-tklp~ivv 187 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA----SSFPTVVVYV--VDTPRSTSPT-TFMSNMLYACSILYK-TKLPFIVV 187 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh----hcCCeEEEEE--ecCCcCCCch-hHHHHHHHHHHHHHh-ccCCeEEE
Confidence 456899999998742 22233333333 3578889999 4543432221 121111 111111 12799999
Q ss_pred EecccCC
Q 025189 117 LTHAQLC 123 (256)
Q Consensus 117 ~Tk~D~~ 123 (256)
+||+|..
T Consensus 188 fNK~Dv~ 194 (366)
T KOG1532|consen 188 FNKTDVS 194 (366)
T ss_pred Eeccccc
Confidence 9999985
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00022 Score=67.05 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=36.7
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||||....+ ....+.+........ ...++|++... .. .....+++.+... ...-+|+||.
T Consensus 427 ~~~DLVLIDTaG~s~~D---~~l~eeL~~L~aa~~-~a~lLVLpAts-s~-~Dl~eii~~f~~~------~~~gvILTKl 494 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRD---RALAAQLNWLRAARQ-VTSLLVLPANA-HF-SDLDEVVRRFAHA------KPQGVVLTKL 494 (559)
T ss_pred ccCCEEEecCCCcchhh---HHHHHHHHHHHHhhc-CCcEEEEECCC-Ch-hHHHHHHHHHHhh------CCeEEEEecC
Confidence 35678999999986432 222222222111122 23455544442 11 2223344444432 4677999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 495 DEt 497 (559)
T PRK12727 495 DET 497 (559)
T ss_pred cCc
Confidence 974
No 332
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.76 E-value=4e-05 Score=64.13 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|+||+||||+=-.++..-.+.-....+.|-+....+..+-| .-+.+||.-|.... -+.++..-+.- .-...+++
T Consensus 10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f---men~~~~q~d~-iF~nV~vl 85 (295)
T KOG3886|consen 10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF---MENYLSSQEDN-IFRNVQVL 85 (295)
T ss_pred eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH---HHHHHhhcchh-hheeheee
Confidence 699999999998888865444333344555556555555555 67789999887421 01111100000 00468999
Q ss_pred EEEEeCCCCCCCHHH---HHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 80 LYADRLDAYRVDDLD---RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 80 L~v~~~d~~r~~~~~---~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
++|+++....+...- +..++.+.+.-++ -++...++|.|+...
T Consensus 86 i~vFDves~e~~~D~~~yqk~Le~ll~~SP~---AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 86 IYVFDVESREMEKDFHYYQKCLEALLQNSPE---AKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeccchhhhhhHHHHHHHHHHHHhcCCc---ceEEEEEeechhccc
Confidence 999888764343222 2334444444333 467778899998643
No 333
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00025 Score=66.44 Aligned_cols=179 Identities=13% Similarity=0.197 Sum_probs=96.2
Q ss_pred CCCCCCCHHHHHHHHhCC--------------Cccccc----------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGE--------------RVVTVN----------------SFQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~--------------~~~~~~----------------~~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|...+||||+.-.|+-. ..+..+ ...+.|........+-....++|+|+
T Consensus 183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDa 262 (603)
T KOG0458|consen 183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDA 262 (603)
T ss_pred EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecC
Confidence 588899999998877642 000000 01122333333333445667899999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH------HHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD------LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~------~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
||..|.. .. .|. .+..+|+-++|++.+...|.. ...+.. .|.+.+|- .+.||++||+|...
T Consensus 263 PGhkdFi--~n----mi~---g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi---~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 263 PGHKDFI--PN----MIS---GASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGI---SQLIVAINKMDLVS 329 (603)
T ss_pred CCccccc--hh----hhc---cccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCc---ceEEEEeecccccC
Confidence 9977642 11 111 113688888887666433321 122222 34455564 68999999999863
Q ss_pred CCCCchhHhhhhccHHHHHHHHHhcccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc--hHHHHHHHHHhhhC
Q 025189 125 PDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW--IPTLVKGITDVATN 202 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~~i~~~~~ 202 (256)
|+-+.|.+ -...+..++.+..+|....+ ..||..-.++.+..-... + +.-..| =+.|++++-...++
T Consensus 330 ---Wsq~RF~e-Ik~~l~~fL~~~~gf~es~v--~FIPiSGl~GeNL~k~~~--~---~~l~~WY~Gp~LL~~id~~~~p 398 (603)
T KOG0458|consen 330 ---WSQDRFEE-IKNKLSSFLKESCGFKESSV--KFIPISGLSGENLIKIEQ--E---NELSQWYKGPTLLSQIDSFKIP 398 (603)
T ss_pred ---ccHHHHHH-HHHHHHHHHHHhcCcccCCc--ceEecccccCCccccccc--c---hhhhhhhcCChHHHHHhhccCC
Confidence 44344433 23457777744445554322 357764443332221110 0 111347 56788888776555
Q ss_pred C
Q 025189 203 K 203 (256)
Q Consensus 203 ~ 203 (256)
+
T Consensus 399 ~ 399 (603)
T KOG0458|consen 399 E 399 (603)
T ss_pred C
Confidence 5
No 334
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00032 Score=54.33 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|-+++||||++-.|.-... +... .|.........+.+..+.+||.-|... +....+++. ++..+++
T Consensus 23 lGLd~aGKTtiLyKLkl~~~--~~~i--pTvGFnvetVtykN~kfNvwdvGGqd~-------iRplWrhYy--~gtqglI 89 (180)
T KOG0071|consen 23 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYY--TGTQGLI 89 (180)
T ss_pred EecccCCceehhhHHhcCCC--cccc--cccceeEEEEEeeeeEEeeeeccCchh-------hhHHHHhhc--cCCceEE
Confidence 58899999999988765532 1111 223334455678889999999998742 222233333 6888999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCc-c-cccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ-I-WRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~-~~~~ivv~Tk~D~~ 123 (256)
||++..+ | +.. .+.-.++-++.+.. + -.+++|..||-|+.
T Consensus 90 FV~Dsa~-~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 90 FVVDSAD-R-DRI-EEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred EEEeccc-h-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 9954433 2 222 22334444444432 1 24567777999983
No 335
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.67 E-value=0.0002 Score=55.44 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|-.++||+|++..|-++++....+ |........+++| +.+++||.-|...-. -|.+.+- ...|.+
T Consensus 23 lGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IR----pyWsNYy-----envd~l 89 (185)
T KOG0074|consen 23 LGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIR----PYWSNYY-----ENVDGL 89 (185)
T ss_pred EecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccc----hhhhhhh-----hccceE
Confidence 4778999999999999998643332 2333344566666 799999999875321 2333332 478999
Q ss_pred EEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+||++-.+..++++ ..+..+.+.+.. -...|+.+-.||-|+.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdll 132 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLL 132 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHH
Confidence 99976544333332 222333222221 1125666666776763
No 336
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=6.1e-05 Score=69.61 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh-cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.+..+.||||||... .+......+..++. ....+-+++|++... -...-.++++.+... ...-+++||
T Consensus 298 ~~~DlVlIDt~G~~~---~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~------~~~~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQ---RDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL------PLDGLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCC---CCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC------CCCEEEEec
Confidence 356789999999853 34444455555553 223345555644332 122223344433322 234688999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
.|..
T Consensus 367 lDet 370 (424)
T PRK05703 367 LDET 370 (424)
T ss_pred cccc
Confidence 9974
No 337
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00044 Score=63.08 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC-CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~-~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.+..+.+|||||... .+...+.++...+.... .+-+++|++.+. ...+ +.+.+.+. .. ....=+++||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~--~~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSD--VKEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence 466789999999864 34434566666653323 335667744442 1222 22223222 11 1356788999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9975
No 338
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=3.9e-05 Score=70.17 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhc---CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN---KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~ 117 (256)
.+..+.+|||||.... +...++.+..++.. ..++-+++|++... -.+.-.++++.. +.+ ...=+|+
T Consensus 298 ~~~D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~~f-~~~-----~~~glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLKAY-ESL-----NYRRILL 366 (432)
T ss_pred CCCCEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHHHh-cCC-----CCCEEEE
Confidence 3667899999998643 33444455544421 23456667744442 122223333333 222 4567889
Q ss_pred ecccCC
Q 025189 118 THAQLC 123 (256)
Q Consensus 118 Tk~D~~ 123 (256)
||.|..
T Consensus 367 TKLDEt 372 (432)
T PRK12724 367 TKLDEA 372 (432)
T ss_pred EcccCC
Confidence 999975
No 339
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.63 E-value=0.00013 Score=58.34 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|..|+||||+++.+++.
T Consensus 6 ~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 6 TGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EECCCCCHHHHHHHHHhc
Confidence 489999999999998875
No 340
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.61 E-value=2.9e-05 Score=69.56 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~ 60 (256)
+|-++|||||+||+|.......+++.++.|..-+..+ -+..+.++|.||+.-....+
T Consensus 258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~~~~~ 314 (435)
T KOG2484|consen 258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPPSIDE 314 (435)
T ss_pred ecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeecCCCc
Confidence 6889999999999999999988998888776544332 24578999999998765443
No 341
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00028 Score=61.30 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.++||||-.. .+...++++.+++....+|.+++|++.. .-...-..+++.+.. + ...-+++||.|
T Consensus 154 ~~D~ViIDt~Gr~~---~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~f~~-~-----~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD-I-----HIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCc---CCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHHhCC-C-----CCCEEEEEeec
Confidence 56889999999853 3445555666555444677888884433 222233344444433 1 45678899999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 223 et 224 (270)
T PRK06731 223 ET 224 (270)
T ss_pred CC
Confidence 75
No 342
>PRK01889 GTPase RsgA; Reviewed
Probab=97.57 E-value=4.5e-05 Score=68.94 Aligned_cols=54 Identities=33% Similarity=0.537 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~ 57 (256)
+|.+|+|||||+|+|+|.....++... .+|......... ++ ..++||||+....
T Consensus 201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-~~--~~l~DtpG~~~~~ 261 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-SG--GLLIDTPGMRELQ 261 (356)
T ss_pred ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-CC--CeecCCCchhhhc
Confidence 599999999999999997554443321 122221222111 22 2588999996544
No 343
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.55 E-value=9.8e-05 Score=68.33 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.|+||||... .+...+++++.....-.+|.+++|++... .. ..++.... |.+.. ...-+|+||.|
T Consensus 175 ~~DvVIIDTAGr~~---~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHA---LEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKLD 243 (437)
T ss_pred cCCEEEEECCCccc---chHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence 34789999999853 34555556655433347888999965543 22 23333322 33221 34578889998
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 64
No 344
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00082 Score=58.38 Aligned_cols=128 Identities=9% Similarity=0.091 Sum_probs=73.4
Q ss_pred CCCCCCCHHHHHHHHhCCCc---------------ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV---------------VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|.-..|||||..+|.+.-. ++...-.+.|-.+.....+-+.+.+..+|.||..| |.+
T Consensus 18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-------YvK 90 (394)
T COG0050 18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YVK 90 (394)
T ss_pred eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-------HHH
Confidence 47778999999999886311 11111112344444455566788999999999753 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHH
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI 145 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i 145 (256)
++.. .....|.-++|+..++..+-..-..++ |.+..|- .++++.+||+|+.+ + ++.++.-.-..++++
T Consensus 91 NMIt--gAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGv---p~ivvflnK~Dmvd--d---~ellelVemEvreLL 158 (394)
T COG0050 91 NMIT--GAAQMDGAILVVAATDGPMPQTREHIL--LARQVGV---PYIVVFLNKVDMVD--D---EELLELVEMEVRELL 158 (394)
T ss_pred HHhh--hHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCC---cEEEEEEecccccC--c---HHHHHHHHHHHHHHH
Confidence 3321 113568788887777755433322222 2233343 57888999999862 1 222222234556666
Q ss_pred HH
Q 025189 146 RL 147 (256)
Q Consensus 146 ~~ 147 (256)
+.
T Consensus 159 s~ 160 (394)
T COG0050 159 SE 160 (394)
T ss_pred HH
Confidence 54
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.53 E-value=0.0019 Score=52.02 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.++||||.... +...+..+..+.....++.+++|++... .....+.+..+.+..+ -.-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 566899999998532 4455555555443345899999966532 2333344454444443 3577889999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 151 ~~ 152 (173)
T cd03115 151 GD 152 (173)
T ss_pred CC
Confidence 75
No 346
>PRK10867 signal recognition particle protein; Provisional
Probab=97.53 E-value=0.00079 Score=62.26 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.|+||||... .++...+++......-.++-+++|+ |+. ......+..+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVl--da~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVV--DAM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEE--ecc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45789999999854 2344444444433223677888884 431 2223333444444332 34577889998
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 53
No 347
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.001 Score=60.68 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 2 GKGGVGKSSTVNSVIGERV--VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~--~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
|.--.|||||+.++.|... .+.....+.|.+...+....+...+.++|.||..+ .+..+-. ....+|..
T Consensus 7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~-------~i~~mia--g~~~~d~a 77 (447)
T COG3276 7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD-------FISNLLA--GLGGIDYA 77 (447)
T ss_pred eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH-------HHHHHHh--hhcCCceE
Confidence 4455799999999999643 22222345667777777777777899999999853 1222211 12589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
|+|++.|. -++.+..+.+..| +.||- ++.++|+||+|..+
T Consensus 78 lLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d 117 (447)
T COG3276 78 LLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVD 117 (447)
T ss_pred EEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEecccccc
Confidence 99987764 4556655555444 45565 68899999999863
No 348
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.42 E-value=4.1e-05 Score=68.66 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~ 57 (256)
||-+++||||+||+|-...++.+.+.++.|..=++..+ -+.+.+||.||+--+.
T Consensus 313 iGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 313 IGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred ecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence 68899999999999999999999988887764332221 1356899999997654
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.28 E-value=0.001 Score=57.92 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHH-HHHhhcCCcccccEEEEEec
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIK-AVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~-~l~~~~g~~~~~~~ivv~Tk 119 (256)
.|..+.||.|.|.+.+. -+ |. .-+|.+++|.-.. ..+ +.+.++ -+.++ +. ++|+||
T Consensus 142 aG~DvIIVETVGvGQse---v~----I~-----~~aDt~~~v~~pg---~GD-~~Q~iK~GimEi-aD------i~vINK 198 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VD----IA-----NMADTFLVVMIPG---AGD-DLQGIKAGIMEI-AD------IIVINK 198 (323)
T ss_pred cCCCEEEEEecCCCcch---hH----Hh-----hhcceEEEEecCC---CCc-HHHHHHhhhhhh-hh------eeeEec
Confidence 36778999999998653 12 22 4689999884332 223 344443 34443 32 899999
Q ss_pred ccC
Q 025189 120 AQL 122 (256)
Q Consensus 120 ~D~ 122 (256)
+|.
T Consensus 199 aD~ 201 (323)
T COG1703 199 ADR 201 (323)
T ss_pred cCh
Confidence 995
No 350
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.25 E-value=0.00018 Score=61.26 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|-+.+||||+++.|.|..- ++.++..+|-.+......++|-++.+.|.||+.++...... -.+.|. ..+.++++
T Consensus 65 vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---vartcnli 140 (358)
T KOG1487|consen 65 VGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---VARTCNLI 140 (358)
T ss_pred EecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE---EeecccEE
Confidence 47789999999999999743 45556666665555566688999999999999986533221 111111 22578999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGK 107 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~ 107 (256)
++|.++- . .-..+++++.-.+.||-
T Consensus 141 ~~vld~~--k-p~~hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 141 FIVLDVL--K-PLSHKKIIEKELEGFGI 165 (358)
T ss_pred EEEeecc--C-cccHHHHHHHhhhccee
Confidence 9994443 2 12456777776677773
No 351
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.23 E-value=0.00037 Score=59.68 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=33.7
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHH-HHHHhhcCCcccccEEEEEec
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQII-KAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~-~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.|..+.|+.|.|.+... - .+. .-+|.+++|....... +.+.+ .-+.++ .=++|+||
T Consensus 120 aG~D~IiiETVGvGQsE---~----~I~-----~~aD~~v~v~~Pg~GD----~iQ~~KaGimEi-------aDi~vVNK 176 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE---V----DIA-----DMADTVVLVLVPGLGD----EIQAIKAGIMEI-------ADIFVVNK 176 (266)
T ss_dssp TT-SEEEEEEESSSTHH---H----HHH-----TTSSEEEEEEESSTCC----CCCTB-TTHHHH--------SEEEEE-
T ss_pred cCCCEEEEeCCCCCccH---H----HHH-----HhcCeEEEEecCCCcc----HHHHHhhhhhhh-------ccEEEEeC
Confidence 47788999999998532 1 222 4689999996665422 11222 112233 23899999
Q ss_pred ccC
Q 025189 120 AQL 122 (256)
Q Consensus 120 ~D~ 122 (256)
+|.
T Consensus 177 aD~ 179 (266)
T PF03308_consen 177 ADR 179 (266)
T ss_dssp -SH
T ss_pred CCh
Confidence 995
No 352
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0029 Score=60.43 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-------CC---------CCcceeEEEEe-----eeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQ---------SEALRPVMVSR-----SKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~---------~~t~~~~~~~~-----~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|.=++|||+|+..|.++.....+. +. +++-+....+. +...+-++++||||.-+. +
T Consensus 134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF--~ 211 (971)
T KOG0468|consen 134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF--S 211 (971)
T ss_pred eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccc--h
Confidence 4777899999999998875321110 00 01111110111 111234689999998743 3
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++ ....+ .-.|++++|+++-.. +.-+..++++...+.- .++++|+||.|..
T Consensus 212 DE-~ta~l------~~sDgvVlvvDv~EG-VmlntEr~ikhaiq~~-----~~i~vviNKiDRL 262 (971)
T KOG0468|consen 212 DE-TTASL------RLSDGVVLVVDVAEG-VMLNTERIIKHAIQNR-----LPIVVVINKVDRL 262 (971)
T ss_pred HH-HHHHh------hhcceEEEEEEcccC-ceeeHHHHHHHHHhcc-----CcEEEEEehhHHH
Confidence 33 33334 368999999666542 3333344444333321 7999999999963
No 353
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.20 E-value=0.0028 Score=58.59 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.|+||||... .+.....++..+...-.+|-+++|++.. .........+.+.+.. ...=+|+||.
T Consensus 181 ~~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 355789999999854 3344455554443334678889995432 2233334444444333 3456778998
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 853
No 354
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0013 Score=67.08 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHhCCC--cccccCCCCCcc-eeEEEEeeeCCeEEEEEeCCCCCCCCc----CcHH----HHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGER--VVTVNSFQSEAL-RPVMVSRSKGGFTLNIIDTPGLVEAGY----VNYQ----ALELIKG 69 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~--~~~~~~~~~~t~-~~~~~~~~~~g~~v~liDTPG~~~~~~----~~~~----~~~~i~~ 69 (256)
||+.|+||||++..- |.. .+......+... .+..|.. +-+..-++|||.|-.-.-. .+.. .+..+++
T Consensus 131 iG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 131 IGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred ecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence 799999999998542 221 111111111100 0122222 2233457999999876432 1221 2222222
Q ss_pred hhhcCCCcEEEEEEeCCCCC-CCHHHH-HH-------HHHHHhhcCCcccccEEEEEecccCCC
Q 025189 70 FLLNKTIDVLLYADRLDAYR-VDDLDR-QI-------IKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d~~r-~~~~~~-~~-------~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.=..+.+|.|++.+++.+-- .+..+. .. +++|.+.++- ..|++|++||+|+.+
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEecccccc
Confidence 22235799999998876422 233333 11 3344445543 489999999999863
No 355
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00039 Score=55.73 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (256)
+|.-++||+|++-++-..- ...++.. .+|......+..+++..+.+||.-|..... ...+.+- ..
T Consensus 23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lr----Slw~~yY-----~~ 92 (197)
T KOG0076|consen 23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLR----SLWKKYY-----WL 92 (197)
T ss_pred eccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHH----HHHHHHH-----HH
Confidence 4888999999997764421 1112222 123334445566778899999999975322 2222222 37
Q ss_pred CcEEEEEEeCCC-CCCCHHHHHHHHHH-HhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDA-YRVDDLDRQIIKAV-TGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~-~r~~~~~~~~~~~l-~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++|+++..+ .|+.+ ....++.+ .+..-++ .|+++.+||-|+.
T Consensus 93 ~H~ii~viDa~~~eR~~~-~~t~~~~v~~~E~leg--~p~L~lankqd~q 139 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEE-SKTAFEKVVENEKLEG--APVLVLANKQDLQ 139 (197)
T ss_pred hceeEEeecCCCHHHHHH-HHHHHHHHHHHHHhcC--Cchhhhcchhhhh
Confidence 899999976665 33433 33333333 2222222 6899999999984
No 356
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.15 E-value=0.00053 Score=64.13 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||++..|.+.
T Consensus 262 vGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred ECCCCccHHHHHHHHHHH
Confidence 699999999999988863
No 357
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0036 Score=57.19 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=46.7
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 113 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ 113 (256)
..-+..|++..+++.||||..|.+ .+.|.-. .-.|..+.|++.-. -+.....++++. .++-+ .|+
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFS--EDTYRtL-------tAvDsAvMVIDaAK-GiE~qT~KLfeV-crlR~----iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFS--EDTYRTL-------TAVDSAVMVIDAAK-GIEPQTLKLFEV-CRLRD----IPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccc--hhHHHHH-------HhhheeeEEEeccc-CccHHHHHHHHH-HhhcC----Cce
Confidence 345667899999999999998754 3333322 25788899944331 244444444432 22222 688
Q ss_pred EEEEecccC
Q 025189 114 LLVLTHAQL 122 (256)
Q Consensus 114 ivv~Tk~D~ 122 (256)
+-..||.|.
T Consensus 137 ~TFiNKlDR 145 (528)
T COG4108 137 FTFINKLDR 145 (528)
T ss_pred EEEeecccc
Confidence 888888886
No 358
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.10 E-value=0.0057 Score=49.43 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
+...+.|+|||+.... .....+ ..+|.+++++..+.... ..-..+++.+.+. + .+..+|+|++
T Consensus 91 ~~~d~viiDtpp~~~~-----~~~~~l------~~aD~vliv~~~~~~~~-~~~~~~~~~l~~~-~----~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----PVIASL------TGADAALLVTEPTPSGL-HDLERAVELVRHF-G----IPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcH-----HHHHHH------HcCCEEEEEecCCcccH-HHHHHHHHHHHHc-C----CCEEEEEeCC
Confidence 4567899999965421 222222 47899999977664222 2234455555443 2 4578999999
Q ss_pred cC
Q 025189 121 QL 122 (256)
Q Consensus 121 D~ 122 (256)
|.
T Consensus 154 ~~ 155 (179)
T cd03110 154 DL 155 (179)
T ss_pred CC
Confidence 86
No 359
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.0027 Score=58.55 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHhCCCcccc--------------cCCCCCcceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 5 GVGKSSTVNSVIGERVVTV--------------NSFQSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 5 G~GKSSliN~l~g~~~~~~--------------~~~~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
-.|||||...|+....... ..-.+.|-+.+.....+ +...+.+|||||.-|....-. +
T Consensus 19 DHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVS---R 95 (603)
T COG0481 19 DHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS---R 95 (603)
T ss_pred cCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEeh---h
Confidence 4799999999986422110 01113344444433333 235678999999988654322 2
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++ -+...|+|++.+. .-+.+.+.-.--.+..+ --++-|+||.|+.
T Consensus 96 SLA------ACEGalLvVDAsQ----GveAQTlAN~YlAle~~--LeIiPViNKIDLP 141 (603)
T COG0481 96 SLA------ACEGALLVVDASQ----GVEAQTLANVYLALENN--LEIIPVLNKIDLP 141 (603)
T ss_pred hHh------hCCCcEEEEECcc----chHHHHHHHHHHHHHcC--cEEEEeeecccCC
Confidence 333 4556677744442 22333333333333333 4689999999995
No 360
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00035 Score=56.86 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEe
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIID 49 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liD 49 (256)
.|+|||||||++..|+.......| .+.||+.+. .++.+|+...+++
T Consensus 10 sgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR--~gEv~G~dY~Fvs 55 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDDKLRFS-VSATTRKPR--PGEVDGVDYFFVT 55 (191)
T ss_pred ECCCCCCHHHHHHHHHhhcCeEEE-EEeccCCCC--CCCcCCceeEeCC
Confidence 399999999999999988632222 334555443 3567777665544
No 361
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.97 E-value=0.011 Score=45.99 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHhCC------CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189 2 GKGGVGKSSTVNSVIGE------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 75 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~------~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (256)
|+.|+|||++--.+... .+..+..-...+ .+ ...+.|+|||+..+ ......+ ..
T Consensus 7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------~~-~yd~VIiD~p~~~~-----~~~~~~l------~~ 66 (139)
T cd02038 7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------NL-DYDYIIIDTGAGIS-----DNVLDFF------LA 66 (139)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------CC-CCCEEEEECCCCCC-----HHHHHHH------Hh
Confidence 68999999996555432 111111100000 01 15679999998532 2222233 36
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
+|.+++++..+...+ ..-..+++.+.+..+ ..++.+|+|+++.
T Consensus 67 aD~vviv~~~~~~s~-~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 67 ADEVIVVTTPEPTSI-TDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred CCeEEEEcCCChhHH-HHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 899999965553211 112445566655432 2578899999864
No 362
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0026 Score=51.74 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc---eeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL---RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~---~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|..|.||+|++++.+-...... +..++. .+.......+...+.+|||.|..-.+...+.+. | ...
T Consensus 16 vGdgg~gKtt~vkr~ltgeFe~~--y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy--I-------~~q 84 (216)
T KOG0096|consen 16 VGDGGTGKTTFVKRHLTGEFEKT--YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY--I-------QGQ 84 (216)
T ss_pred ecCCcccccchhhhhhcccceec--ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE--E-------ecc
Confidence 59999999999999876543221 222211 111122222337889999999876443322211 1 233
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+.++++++.+.-...+..++-+.+.+..+. .|+++..||.|...
T Consensus 85 cAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 85 CAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA 128 (216)
T ss_pred eeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence 445555566522445666777888888765 69999999999753
No 363
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.002 Score=62.14 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEE--------------------EeeeCCeEEEEEeCCCCCCCCcCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV--------------------SRSKGGFTLNIIDTPGLVEAGYVN 60 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~--------------------~~~~~g~~v~liDTPG~~~~~~~~ 60 (256)
+|.-.+|||-|+..|.|.++ ..+...+.|...-.. ...+.| +.+|||||....
T Consensus 481 lGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg--~lvIdtpghEsF---- 553 (1064)
T KOG1144|consen 481 LGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG--LLVIDTPGHESF---- 553 (1064)
T ss_pred eecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe--eEEecCCCchhh----
Confidence 57778999999999999766 333333333322110 112223 489999995432
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
..+++.- ..-+|+.++|+++-. .+......-+..|+... -|+||.+||.|.
T Consensus 554 ----tnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDR 604 (1064)
T KOG1144|consen 554 ----TNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDR 604 (1064)
T ss_pred ----hhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence 2333211 134899999977653 35555555555555442 799999999985
No 364
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.85 E-value=0.015 Score=42.98 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHhCC-------CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189 2 GKGGVGKSSTVNSVIGE-------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 74 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~-------~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (256)
++.|+||||+.-.|... ++..+..-.. .+-.+.|+|||+..+. .....+ .
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~-----~~~~~l------~ 63 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE-----VSLAAL------D 63 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH-----HHHHHH------H
Confidence 58999999987655432 1111111000 1116799999996532 122222 3
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.+|.++++...+...+ ..-..+++.+.+.-.. -..++.+|+|+
T Consensus 64 ~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSI-RNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHH-HHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 6799999966553221 2233455555544222 12467777775
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0038 Score=58.69 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
||++|+||||||.+|..+-. ...+...+. .. ......+.+++...|. |-. ..+ .++ .=+|+|
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GP---iT--vvsgK~RRiTflEcp~--Dl~----~mi-Dva-----KIaDLV 137 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGP---IT--VVSGKTRRITFLECPS--DLH----QMI-DVA-----KIADLV 137 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCCc---eE--EeecceeEEEEEeChH--HHH----HHH-hHH-----Hhhhee
Confidence 69999999999999986421 111221111 11 1122346789998882 211 111 122 347999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+.++.+- .|.-+...++..+... | +.+++-|+||.|++
T Consensus 138 lLlIdgnf-GfEMETmEFLnil~~H-G---mPrvlgV~ThlDlf 176 (1077)
T COG5192 138 LLLIDGNF-GFEMETMEFLNILISH-G---MPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEecccc-CceehHHHHHHHHhhc-C---CCceEEEEeecccc
Confidence 99944332 3544555666555544 3 36899999999986
No 366
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.80 E-value=0.004 Score=40.73 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCcEEEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 75 TIDVLLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
=.++|||+++++... .+ ++...+++.++..|++ +|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 468999998888655 32 3445688999999976 89999999997
No 367
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0053 Score=55.30 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
++..+.|+||.|-. ..+....++++++...-.||.+|+|.+.+
T Consensus 182 e~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred cCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 46789999999975 34455666666665556899999995443
No 368
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0011 Score=56.22 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|+||||||||+|.+.|-..
T Consensus 35 lGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999543
No 369
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.057 Score=48.19 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=56.9
Q ss_pred CCCCCCCHHHHHHHHhC--CCcccccCCCCCcceeEE-------------EEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIG--ERVVTVNSFQSEALRPVM-------------VSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g--~~~~~~~~~~~~t~~~~~-------------~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|.-.+||+||..+|.. ...|.-...+++++.... .-.+.+..+++++|.||...
T Consensus 13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---------- 82 (522)
T KOG0461|consen 13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---------- 82 (522)
T ss_pred EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----------
Confidence 46778999999998864 222211111122211111 00122345679999999631
Q ss_pred HHHHhh-hcCCCcEEEEEEeCCCCCCC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 66 LIKGFL-LNKTIDVLLYADRLDAYRVD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 66 ~i~~~l-~~~~~d~vL~v~~~d~~r~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.|+..+ -..=+|+.++|+++....-+ ..+--++. +-.-++.+||+||.|..+
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-------~~~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-------ELLCKKLVVVINKIDVLP 136 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-------hhhccceEEEEecccccc
Confidence 222222 11347899999777643222 22322322 222367899999998763
No 370
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.47 E-value=0.032 Score=43.65 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999974
No 371
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.45 E-value=0.036 Score=44.30 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
.+.|+|||+-.+. .....+ ..+|.+++++..+...+. .-..+++.+.+. + .....+|+|+++.
T Consensus 64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~-~~~~~~~~~~~~-~---~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLR-DADRVKGLLEAL-G---IKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHH-HHHHHHHHHHHc-C---CceEEEEEeCCcc
Confidence 6899999985432 222222 368889999666542222 222445555442 1 1457789999875
No 372
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.0062 Score=53.95 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=43.0
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEE
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv 116 (256)
-.|..+.++||.|--....---.-++.|.+-+. ...+|-+|++++... ..+-..-.+.+.+.. .-.-++
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav-----~l~GiI 290 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAV-----GLDGII 290 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhc-----CCceEE
Confidence 347788999999987653222223334444331 124677888833332 233333344444554 345788
Q ss_pred EecccCC
Q 025189 117 LTHAQLC 123 (256)
Q Consensus 117 ~Tk~D~~ 123 (256)
+||.|..
T Consensus 291 lTKlDgt 297 (340)
T COG0552 291 LTKLDGT 297 (340)
T ss_pred EEecccC
Confidence 9999964
No 373
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.42 E-value=0.0024 Score=52.45 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 48 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~li 48 (256)
+|++||||||+++.|+..........+.||+.+. .++.+|+...++
T Consensus 10 ~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fv 55 (186)
T PRK14737 10 SSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFL 55 (186)
T ss_pred ECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeC
Confidence 5999999999999999864222222333444332 234555554444
No 374
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.41 E-value=0.002 Score=43.05 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
.|++|+||||++.++.
T Consensus 29 ~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQ 44 (62)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998865
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.39 E-value=0.024 Score=46.07 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999964
No 376
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.36 E-value=0.003 Score=49.09 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~ 53 (256)
+|+||+||||+++.|.+.-... ......+|+.+. ..+.+|....++|...+
T Consensus 5 ~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~--~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR--PGEVDGVDYHFVSKEEF 56 (137)
T ss_pred ECCCCCCHHHHHHHHHhcCCccceecccccccCCC--CCccCCceeEEeCHHHH
Confidence 5999999999999999862211 112223444332 22456666677765443
No 377
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.36 E-value=0.0012 Score=60.90 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE----EEeeeCC--eEEEEE-----eCCCCCCCCcCcHHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM----VSRSKGG--FTLNII-----DTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----~~~~~~g--~~v~li-----DTPG~~~~~~~~~~~~~~i~~ 69 (256)
+|.+|+|||||+|.|.+...+.+..+......... ......+ ..-.+| |+||...... .....+.+
T Consensus 163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~---~~a~~iAE 239 (434)
T PRK08472 163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA---FCAMSVAE 239 (434)
T ss_pred ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH---HHHHHHHH
Confidence 58999999999999997543222221111110000 0011122 123566 7888754321 12335666
Q ss_pred hhhcCCCcEEEEEEeCC
Q 025189 70 FLLNKTIDVLLYADRLD 86 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d 86 (256)
++...+-|++|++.+++
T Consensus 240 yFrd~G~~Vll~~DslT 256 (434)
T PRK08472 240 YFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHcCCCEEEecccch
Confidence 66667899999886655
No 378
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.34 E-value=0.014 Score=49.78 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY 81 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~ 81 (256)
|..|+||||++.+++.+-. . . | +.+|..+.-.-. .-.+.++.+ .......|||
T Consensus 59 G~rGtGKSSlVkall~~y~-~------~------------G--LRlIev~k~~L~--~l~~l~~~l----~~~~~kFIlf 111 (249)
T PF05673_consen 59 GARGTGKSSLVKALLNEYA-D------Q------------G--LRLIEVSKEDLG--DLPELLDLL----RDRPYKFILF 111 (249)
T ss_pred cCCCCCHHHHHHHHHHHHh-h------c------------C--ceEEEECHHHhc--cHHHHHHHH----hcCCCCEEEE
Confidence 8999999999999997521 0 0 1 344444432100 112333333 3356788899
Q ss_pred EEeCCCCCCCHHH--HHHHHHHHhhcCCcccccEEEEEecc
Q 025189 82 ADRLDAYRVDDLD--RQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 82 v~~~d~~r~~~~~--~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
|.++ .|.+.| -..++.+.+.--+..-.++++..|=-
T Consensus 112 ~DDL---sFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 112 CDDL---SFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ecCC---CCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 9544 444433 44445444432233346677777643
No 379
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.31 E-value=0.0019 Score=52.24 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 52 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG 52 (256)
+|++|+||||+++.|.+...........+|+.+. ..+.+|..+.++++..
T Consensus 7 ~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~ 56 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEE 56 (180)
T ss_pred ECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHH
Confidence 5999999999999999864322222122333222 2234555555555444
No 380
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.28 E-value=0.042 Score=38.68 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY 81 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~ 81 (256)
|..|+||||+.+.+...-. . .. .+. .-++ .+.++|+||..+..... ..... ...|.+++
T Consensus 6 g~~G~Gktt~~~~l~~~l~-~-~g-----~~v----~~~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~~vi~ 64 (99)
T cd01983 6 GKGGVGKTTLAANLAAALA-K-RG-----KRV----LLID--DYVLIDTPPGLGLLVLL--CLLAL------LAADLVII 64 (99)
T ss_pred CCCCCCHHHHHHHHHHHHH-H-CC-----CeE----EEEC--CEEEEeCCCCccchhhh--hhhhh------hhCCEEEE
Confidence 7789999999988876421 1 00 001 1111 66999999986543210 01111 47888888
Q ss_pred EEeCCC
Q 025189 82 ADRLDA 87 (256)
Q Consensus 82 v~~~d~ 87 (256)
+...+.
T Consensus 65 v~~~~~ 70 (99)
T cd01983 65 VTTPEA 70 (99)
T ss_pred ecCCch
Confidence 855553
No 381
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.28 E-value=0.015 Score=51.76 Aligned_cols=81 Identities=10% Similarity=0.176 Sum_probs=49.8
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhhcC
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFG 106 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~~g 106 (256)
......+++..+.+||+.|.... ...+. +|. .++++|+||+++++... ..--.+.+..+...+.
T Consensus 152 ~~~~f~~~~~~~~~~DvgGq~~~---R~kW~----~~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 152 VETKFTIKNLKFRMFDVGGQRSE---RKKWI----HCF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred eEEEEEecceEEEEECCCCCccc---chhHH----HHh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 34455678889999999997532 22222 222 58999999988875310 1122233334444433
Q ss_pred Ccc--cccEEEEEecccCC
Q 025189 107 KQI--WRKSLLVLTHAQLC 123 (256)
Q Consensus 107 ~~~--~~~~ivv~Tk~D~~ 123 (256)
... ..|+++++||.|+.
T Consensus 223 ~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 223 SRWFANTSIILFLNKKDLF 241 (317)
T ss_pred CccccCCCEEEEccChHHH
Confidence 221 37999999999974
No 382
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.012 Score=56.94 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189 5 GVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 5 G~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~ 69 (256)
..|||||+.+|+..+....+... +.|.+....+....+.-+++||+||.-|....-.. ..
T Consensus 19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevss---as-- 93 (887)
T KOG0467|consen 19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSS---AS-- 93 (887)
T ss_pred cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhh---hh--
Confidence 47999999999876432211111 12223333334456778899999999876422111 11
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
.=.|..|+.+++.. ..... ....+++..-+. ...++|+||.|.
T Consensus 94 ----~l~d~alvlvdvve-gv~~q---t~~vlrq~~~~~--~~~~lvinkidr 136 (887)
T KOG0467|consen 94 ----RLSDGALVLVDVVE-GVCSQ---TYAVLRQAWIEG--LKPILVINKIDR 136 (887)
T ss_pred ----hhcCCcEEEEeecc-ccchh---HHHHHHHHHHcc--CceEEEEehhhh
Confidence 23455555544443 23333 333344443333 578999999994
No 383
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.24 E-value=0.028 Score=53.08 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|+-++|||.++++++|+.... +....+......-..... ...+.+-|.+-. +.+..... ...+|+
T Consensus 431 ~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k----------e~~cDv 498 (625)
T KOG1707|consen 431 VGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK----------EAACDV 498 (625)
T ss_pred EcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc----------cceeee
Confidence 5999999999999999986544 222221111111111222 234455555543 22221110 026899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+.++++.+..+.. ..+..+.+.+-..-..|+++|.+|+|+.
T Consensus 499 ~~~~YDsS~p~sf----~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 499 ACLVYDSSNPRSF----EYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred EEEecccCCchHH----HHHHHHHHHhhhccCCceEEEeeccccc
Confidence 9999877743322 2222222222222347999999999984
No 384
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.22 E-value=0.019 Score=43.32 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--CcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--VNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~~~~~~~~i~~~l~~~~~d~ 78 (256)
.|++|+|||+++..+...- +..+.-+|.+-+.+... ........+.+.-. ..-..
T Consensus 4 ~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 60 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SAKPC 60 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TSTSE
T ss_pred ECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccccccccccccccccccc-cccce
Confidence 4999999999999998752 12234455555542211 11122222222111 12258
Q ss_pred EEEEEeCCCCC------CCHHHHHHHHHHHhhcCCccc--ccEEEEEeccc
Q 025189 79 LLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIW--RKSLLVLTHAQ 121 (256)
Q Consensus 79 vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~--~~~ivv~Tk~D 121 (256)
||++..++..- ........+..+...+..... .++++++|-.+
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 88887776311 112234555555555443221 35677776554
No 385
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.01 Score=54.30 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||.|-. ..+++.+++++..-..-.||-+|+| +|+ -....-....+.+.+.. .-+=||+||.
T Consensus 181 ~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llV--vDa-m~GQdA~~~A~aF~e~l-----~itGvIlTKl 249 (451)
T COG0541 181 EGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLV--VDA-MIGQDAVNTAKAFNEAL-----GITGVILTKL 249 (451)
T ss_pred cCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEE--Eec-ccchHHHHHHHHHhhhc-----CCceEEEEcc
Confidence 35678999999975 3466666666654344589999999 453 12233344555555544 3456778888
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 753
No 386
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.043 Score=44.13 Aligned_cols=19 Identities=26% Similarity=0.649 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 387
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.09 E-value=0.0032 Score=53.08 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|+||||||||+|.|-|-..
T Consensus 37 ~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred ECCCCCCHHHHHHHHhcccC
Confidence 69999999999999987543
No 388
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.09 E-value=0.0028 Score=61.52 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCCCCc--Cc----HHHHHHHHHhhhcCCCcEEEEE-EeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEE
Q 025189 44 TLNIIDTPGLVEAGY--VN----YQALELIKGFLLNKTIDVLLYA-DRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116 (256)
Q Consensus 44 ~v~liDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~vL~v-~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv 116 (256)
+++++|+||+..... .. .++...+..++ ...+.+++. .+.+. . -..-..++...+.=+.. .+++-|
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~~~iILav~~an~-d--~ats~alkiarevDp~g--~RTigv 205 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKPNRIILAVTPANS-D--IATSPALVVAREVDPGG--SRTLEV 205 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--cccchhhhhccchhh-h--hhcCHHHHHHHhhCCCc--cchhHH
Confidence 468999999987422 22 23444444444 455666554 33331 1 12223333333432222 789999
Q ss_pred EecccCC
Q 025189 117 LTHAQLC 123 (256)
Q Consensus 117 ~Tk~D~~ 123 (256)
+||.|+.
T Consensus 206 itK~Dlm 212 (657)
T KOG0446|consen 206 ITKFDFM 212 (657)
T ss_pred hhhHHhh
Confidence 9999875
No 389
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.06 E-value=0.0031 Score=51.39 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+||+|||||+|.+.|-.
T Consensus 31 ~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred ECCCCccHHHHHHHHHhcc
Confidence 6999999999999999953
No 390
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.93 E-value=0.0076 Score=52.12 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccC-CCCCcceeEEEEe---eeCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNS-FQSEALRPVMVSR---SKGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~-~~~~t~~~~~~~~---~~~g~~v~liDTPG~~~~ 56 (256)
+|+..+|||.|+|.|++.. .+.++. ..++|...-.... ..++..+.++||.|+++.
T Consensus 27 ~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 27 VGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred ecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 4889999999999999853 344554 3456654433221 335678999999999984
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.91 E-value=0.0036 Score=48.09 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|...
T Consensus 17 ~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EESTTSSHHHHHHHHTTSSH
T ss_pred EccCCCccccceeeeccccc
Confidence 59999999999999999753
No 392
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.88 E-value=0.0052 Score=50.76 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+||+||||+++.|.+..
T Consensus 11 ~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 11 SGPSGAGKSTLVKALLERD 29 (205)
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999863
No 393
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.87 E-value=0.0056 Score=50.97 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||+++.|...
T Consensus 19 ~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 19 SGPSGVGKDAVLARMRER 36 (206)
T ss_pred ECcCCCCHHHHHHHHHhc
Confidence 599999999999999764
No 394
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.0089 Score=50.71 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|+||+|||||.++|.|-..
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EcCCCCCHHHHHHHHhcccC
Confidence 69999999999999999654
No 395
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=95.84 E-value=0.039 Score=49.64 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=51.3
Q ss_pred eeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhh
Q 025189 32 RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGT 104 (256)
Q Consensus 32 ~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~ 104 (256)
........+++..+.+||..|..... ..+ ..|. .++++|+||+++++... ..-....+..+...
T Consensus 173 Gi~~~~f~~~~~~~~~~DvgGqr~~R---~kW----~~~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l 243 (342)
T smart00275 173 GIQETAFIVKKLFFRMFDVGGQRSER---KKW----IHCF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI 243 (342)
T ss_pred ceEEEEEEECCeEEEEEecCCchhhh---hhH----HHHh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence 33445567788999999999974321 222 2233 58999999988875310 11122333444444
Q ss_pred cCCcc--cccEEEEEecccCC
Q 025189 105 FGKQI--WRKSLLVLTHAQLC 123 (256)
Q Consensus 105 ~g~~~--~~~~ivv~Tk~D~~ 123 (256)
+.... ..|+++++||.|+.
T Consensus 244 ~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 244 CNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred HcCccccCCcEEEEEecHHhH
Confidence 44321 36999999999974
No 396
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.0048 Score=55.15 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+||||||||++.|.|=.
T Consensus 35 lGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999953
No 397
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.66 E-value=0.0077 Score=59.57 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~ 74 (256)
+|.-++|||||+|.|||-.....+. ...||...-...... ..-.+.|+|+=|...... .++. .+.-...+...
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~la 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFALA 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHHH
Confidence 6999999999999999986533232 123443221111111 234678999988765321 1222 21111111113
Q ss_pred CCcEEEE---EEeCCCCCCCHH----HHHHHHHHHhhcCC
Q 025189 75 TIDVLLY---ADRLDAYRVDDL----DRQIIKAVTGTFGK 107 (256)
Q Consensus 75 ~~d~vL~---v~~~d~~r~~~~----~~~~~~~l~~~~g~ 107 (256)
-.|++|+ ++++. +.... -+.+++.-.+.|+.
T Consensus 80 ~s~~~iiN~w~~~iG--~~~~an~~lLktvfevnl~lf~~ 117 (742)
T PF05879_consen 80 VSDVLIINMWEHDIG--RYQGANMGLLKTVFEVNLQLFGK 117 (742)
T ss_pred hhhheeeehhhhhhh--hhcccchHHHHHHHHHHHHHHhh
Confidence 4566543 44554 33333 34455555667753
No 398
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.64 E-value=0.11 Score=37.78 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189 2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY 81 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~ 81 (256)
.+.|+||||+.-.|...- +..+ .+....... ....+.|+|+|+..+. .....+ ..+|.+++
T Consensus 7 ~kgG~Gkst~~~~la~~~-~~~~------~~vl~~d~d-~~~d~viiD~p~~~~~-----~~~~~l------~~ad~viv 67 (104)
T cd02042 7 QKGGVGKTTTAVNLAAAL-ARRG------KRVLLIDLD-PQYDYIIIDTPPSLGL-----LTRNAL------AAADLVLI 67 (104)
T ss_pred CCCCcCHHHHHHHHHHHH-HhCC------CcEEEEeCC-CCCCEEEEeCcCCCCH-----HHHHHH------HHCCEEEE
Confidence 378999999876554321 1100 001111111 1156799999997532 222233 36899999
Q ss_pred EEeCC
Q 025189 82 ADRLD 86 (256)
Q Consensus 82 v~~~d 86 (256)
+++.+
T Consensus 68 ~~~~~ 72 (104)
T cd02042 68 PVQPS 72 (104)
T ss_pred eccCC
Confidence 85554
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.54 E-value=0.0074 Score=50.08 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 400
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.013 Score=50.99 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.||+||||+||.|.|-
T Consensus 30 FG~SGsGKTslin~IaGL 47 (352)
T COG4148 30 FGPSGSGKTSLINMIAGL 47 (352)
T ss_pred ecCCCCChhhHHHHHhcc
Confidence 489999999999999985
No 401
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.0079 Score=50.87 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 402
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.024 Score=44.34 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=41.9
Q ss_pred eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189 39 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117 (256)
Q Consensus 39 ~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~ 117 (256)
.+.+.++.+||.-|.+.-. -+.+.+- ...|+++||++-.+ .|....-..+...|++---.. -..++++
T Consensus 58 ~yKNLk~~vwdLggqtSir----PyWRcYy-----~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~a 126 (182)
T KOG0072|consen 58 PYKNLKFQVWDLGGQTSIR----PYWRCYY-----ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFA 126 (182)
T ss_pred ccccccceeeEccCccccc----HHHHHHh-----cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEe
Confidence 4566678899998875321 2333332 47899999955433 224444444444443321111 3567778
Q ss_pred ecccC
Q 025189 118 THAQL 122 (256)
Q Consensus 118 Tk~D~ 122 (256)
||.|.
T Consensus 127 nKqD~ 131 (182)
T KOG0072|consen 127 NKQDY 131 (182)
T ss_pred ccccc
Confidence 99986
No 403
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.011 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN 24 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~ 24 (256)
||+.|+|||||.++|.|...+.+.
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~Vt 59 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYEVT 59 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCceEe
Confidence 699999999999999998655443
No 404
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.33 E-value=0.0098 Score=48.59 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 24 ~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 405
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.32 E-value=0.0097 Score=49.66 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCCCHHHHHHHHhCCc
Confidence 6999999999999999974
No 406
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.31 E-value=0.0096 Score=49.65 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 407
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.0096 Score=49.82 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 408
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.0097 Score=49.79 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 409
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.091 Score=46.54 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhc-CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~-~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+.+.++|.||.. . .++.+|+. .=-|..|+|+..+......+..+-+-.|. +.|- +++++|=||.|
T Consensus 86 R~VSfVDaPGHe--------~--LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKID 151 (415)
T COG5257 86 RRVSFVDAPGHE--------T--LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKID 151 (415)
T ss_pred EEEEEeeCCchH--------H--HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEecccc
Confidence 467999999963 2 23333321 12478888877775333444444443332 2243 89999999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
+.
T Consensus 152 lV 153 (415)
T COG5257 152 LV 153 (415)
T ss_pred ee
Confidence 96
No 410
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.27 E-value=0.01 Score=49.41 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.27 E-value=0.023 Score=50.57 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|.-|+|||||+|.|+..
T Consensus 11 GFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 11 GFLGAGKTTLLRHILNE 27 (318)
T ss_pred ECCCCCHHHHHHHHHhc
Confidence 77899999999999854
No 412
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.26 E-value=0.0095 Score=50.06 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999999964
No 413
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.25 E-value=0.01 Score=49.09 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 414
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.01 Score=49.24 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 31 LGPNGAGKTTLMRILATLT 49 (211)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 415
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.23 E-value=0.0099 Score=48.33 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+|||||+|.+++
T Consensus 27 ~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 59999999999999985
No 416
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.23 E-value=0.11 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
.|++|+|||++++.+...-
T Consensus 25 ~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 25 YGPPGTGKTTLARAIANEL 43 (151)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 417
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.22 E-value=0.01 Score=48.53 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+||||++++|++.-
T Consensus 31 ~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999999863
No 418
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.20 E-value=0.011 Score=49.41 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 419
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.011 Score=48.82 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+|||||||++|.+.|-
T Consensus 37 lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 37 LGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EcCCCccHHHHHHHHhcC
Confidence 599999999999999985
No 420
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.028 Score=53.36 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHhCCCcc--cccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189 5 GVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI 67 (256)
Q Consensus 5 G~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i 67 (256)
-+||+|+-+.++-.... ..+.. .+.|-........+...++.+|||||..|....-+..+..+
T Consensus 49 dsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVl 128 (721)
T KOG0465|consen 49 DAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVL 128 (721)
T ss_pred ecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhc
Confidence 37999999888754211 11111 11222233334456788999999999998766555555333
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+ +|++++.+. ..........+++++.- .|.+...||.|..
T Consensus 129 ------DG--aVlvl~aV~--GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 129 ------DG--AVLVLDAVA--GVESQTETVWRQMKRYN-----VPRICFINKMDRM 169 (721)
T ss_pred ------cC--eEEEEEccc--ceehhhHHHHHHHHhcC-----CCeEEEEehhhhc
Confidence 12 223332233 34455556666666653 6778888999864
No 421
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.14 E-value=0.012 Score=50.02 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999964
No 422
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.012 Score=48.93 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 423
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.13 E-value=0.055 Score=41.97 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=32.9
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+|++|+|+++.. .....+..+.+.+.+.. .+ +++++|+||+|+.
T Consensus 10 ~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~~--k~~iivlNK~DL~ 55 (141)
T cd01857 10 ERSDIVVQIVDARN-PLLFRPPDLERYVKEVD-PR--KKNILLLNKADLL 55 (141)
T ss_pred hhCCEEEEEEEccC-CcccCCHHHHHHHHhcc-CC--CcEEEEEechhcC
Confidence 58999999977653 24445556666666542 22 7999999999985
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.012 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 32 LGPNGAGKTTTIRMILGII 50 (210)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 425
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.11 E-value=0.012 Score=49.09 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 426
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.10 E-value=0.012 Score=48.77 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 427
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.09 E-value=0.013 Score=48.46 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|.-
T Consensus 30 ~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.09 E-value=0.012 Score=43.85 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|+||+|||||++.+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 5999999999999986
No 429
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.08 E-value=0.012 Score=48.83 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 430
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.012 Score=49.58 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.06 E-value=0.012 Score=47.94 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|.+.
T Consensus 8 ~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQR 25 (186)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999999875
No 432
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.05 E-value=0.014 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|+||+|||||++.|+++..
T Consensus 34 ~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhc
Confidence 59999999999999999754
No 433
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.05 E-value=0.013 Score=46.76 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 32 LGENGAGKSTLMKILSGLY 50 (163)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 434
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.04 E-value=0.013 Score=48.93 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 435
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.03 E-value=0.013 Score=48.94 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 436
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.013 Score=49.67 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 437
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.03 E-value=0.013 Score=48.45 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 438
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.03 E-value=0.013 Score=48.72 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999964
No 439
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.013 Score=47.34 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 440
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.02 E-value=0.11 Score=46.41 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=37.3
Q ss_pred EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 46 NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 46 ~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
.+|||+|+.++ .--...+..| +.-++|+++.+ +. .+++..+++.++..-|.+ ++-+-|.+.
T Consensus 215 ~iInT~g~i~~-egy~~llhai----~~f~v~vviVL---g~-------ErLy~~lkk~~~~~~~v~-vv~lpKsgG 275 (415)
T KOG2749|consen 215 CIINTCGWIEG-EGYAALLHAI----KAFEVDVVIVL---GQ-------ERLYSSLKKDLPPKKNVR-VVKLPKSGG 275 (415)
T ss_pred eEEeccceecc-ccHHHHHHHH----HHcCccEEEEe---cc-------HHHHHHHHhhccccccce-EEEecCCCC
Confidence 68999999873 2222333333 33488888877 42 267788888887553444 344456554
No 441
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=95.01 E-value=0.06 Score=42.62 Aligned_cols=110 Identities=20% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+..||+|++-...|....... .......+........|. .+.+||.-|..+.. + .+- +...+.-+
T Consensus 26 lGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~--n-----~lP--iac~dsva 95 (205)
T KOG1673|consen 26 LGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI--N-----MLP--IACKDSVA 95 (205)
T ss_pred ecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceEEEEEEEecCCcHhhh--c-----cCc--eeecCcEE
Confidence 589999999999988887532111 111111222233344444 55799999975321 1 110 02257788
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+||++++.. |.+- -.+.+..++..|-+-----|+|.||-|.+
T Consensus 96 IlFmFDLt~-r~TL--nSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 96 ILFMFDLTR-RSTL--NSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EEEEEecCc-hHHH--HHHHHHHHHHhccCCccceEEeccchHhh
Confidence 999988885 2222 22334444544433212347788998753
No 442
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.014 Score=49.37 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 443
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.99 E-value=0.055 Score=48.48 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.||+||||++|+|++.
T Consensus 166 ~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 166 SGGTSTGKTTFTNAALRE 183 (332)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 499999999999999975
No 444
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.95 E-value=0.014 Score=49.08 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 445
>PHA02518 ParA-like protein; Provisional
Probab=94.94 E-value=0.13 Score=42.20 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=35.7
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh--cCCcccccEEEEEec
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT--FGKQIWRKSLLVLTH 119 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~--~g~~~~~~~ivv~Tk 119 (256)
...+.||||||-.+ ......+ ..+|.+|+++..+...+.. -.++++.+... +... .....++.|+
T Consensus 76 ~~d~viiD~p~~~~-----~~~~~~l------~~aD~viip~~ps~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~iv~n~ 142 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----ELARAAL------RIADMVLIPVQPSPFDIWA-APDLVELIKARQEVTDG-LPKFAFIISR 142 (211)
T ss_pred cCCEEEEeCCCCcc-----HHHHHHH------HHCCEEEEEeCCChhhHHH-HHHHHHHHHHHHhhCCC-CceEEEEEec
Confidence 45789999998532 1222222 3789999996665322221 22334444332 1221 2345677777
Q ss_pred cc
Q 025189 120 AQ 121 (256)
Q Consensus 120 ~D 121 (256)
.+
T Consensus 143 ~~ 144 (211)
T PHA02518 143 AI 144 (211)
T ss_pred cC
Confidence 64
No 446
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.93 E-value=0.015 Score=48.54 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 447
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.014 Score=50.12 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 448
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.90 E-value=0.094 Score=38.86 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+|||+++..+...
T Consensus 6 ~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 6 IGDSGVGKVGKSARFVQF 23 (124)
T ss_pred ECCCChhHHHHHHHHhcC
Confidence 699999999999998543
No 449
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.88 E-value=0.015 Score=48.27 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 450
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.87 E-value=0.028 Score=58.56 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||+.+|+|+-
T Consensus 553 vG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999984
No 451
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.86 E-value=0.015 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|.-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999963
No 452
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.016 Score=54.77 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|+||+||||++|.|.|-..
T Consensus 353 vG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCC
Confidence 69999999999999999644
No 453
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.015 Score=49.80 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999985
No 454
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.85 E-value=0.016 Score=48.07 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 455
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.84 E-value=0.016 Score=48.61 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 37 VGESGSGKSTLARAILGLL 55 (228)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 456
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.84 E-value=0.015 Score=49.23 Aligned_cols=18 Identities=39% Similarity=0.724 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999996
No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.016 Score=48.72 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 5999999999999999974
No 458
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.83 E-value=0.016 Score=47.65 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 459
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.016 Score=49.10 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 460
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.81 E-value=0.017 Score=46.95 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 32 AGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999743
No 461
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.79 E-value=0.017 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|-..
T Consensus 32 vG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 32 VGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcC
Confidence 69999999999999999743
No 462
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.78 E-value=0.015 Score=43.48 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.+||||||+.+.|...
T Consensus 5 ~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999764
No 463
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.77 E-value=0.017 Score=48.55 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLD 60 (228)
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999974
No 464
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.77 E-value=0.017 Score=48.94 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999974
No 465
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.77 E-value=0.017 Score=48.76 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 18 ~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGLL 36 (230)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 466
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.77 E-value=0.016 Score=49.44 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999964
No 467
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.76 E-value=0.017 Score=49.33 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 468
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.017 Score=48.11 Aligned_cols=19 Identities=32% Similarity=0.629 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|.-
T Consensus 29 ~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 29 FGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 469
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.74 E-value=0.018 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 470
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.74 E-value=0.018 Score=48.67 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 17 ~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 471
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.018 Score=49.95 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 56 ~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 472
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.72 E-value=0.018 Score=48.49 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 473
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.017 Score=49.44 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 39 IGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999964
No 474
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.71 E-value=0.018 Score=46.66 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 475
>PRK10908 cell division protein FtsE; Provisional
Probab=94.71 E-value=0.018 Score=48.25 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 476
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.70 E-value=0.018 Score=47.24 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 477
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.70 E-value=0.017 Score=46.17 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
||.+|+||||+.+.|.+.
T Consensus 1 ~G~sGsGKSTla~~la~~ 18 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQ 18 (163)
T ss_pred CCCCCCcHHHHHHHHHHH
Confidence 799999999999988765
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.70 E-value=0.018 Score=49.58 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+.|||||||+++|.|-
T Consensus 34 iGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 699999999999999984
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.69 E-value=0.017 Score=46.67 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||+++.|.+.
T Consensus 7 ~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 7 VGPSGAGKDTLLDYARAR 24 (179)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998764
No 480
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.69 E-value=0.019 Score=47.39 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 481
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.68 E-value=0.018 Score=47.64 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 40 VGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999964
No 482
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.67 E-value=0.017 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 35 VGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EeCCCCCHHHHHHHHhccC
Confidence 5999999999999999974
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.66 E-value=0.02 Score=45.92 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|+|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 33 TGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 484
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.018 Score=48.18 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
||+|||||||++..|-
T Consensus 39 IGPSGcGKST~LR~lN 54 (253)
T COG1117 39 IGPSGCGKSTLLRCLN 54 (253)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 6999999999986554
No 485
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.64 E-value=0.019 Score=47.42 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 32 TGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 486
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.64 E-value=0.019 Score=47.93 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 5999999999999999974
No 487
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.64 E-value=0.019 Score=49.04 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 37 IGPSGSGKSTLLRSINRM 54 (252)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999999985
No 488
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.64 E-value=0.019 Score=49.13 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 6999999999999999964
No 489
>PRK13695 putative NTPase; Provisional
Probab=94.63 E-value=0.1 Score=41.94 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||++..+.+.
T Consensus 6 tG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 6 TGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999987653
No 490
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.63 E-value=0.02 Score=47.73 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 30 ~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 30 MGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 491
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.62 E-value=0.019 Score=49.75 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 6999999999999999964
No 492
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.62 E-value=0.019 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|+|.-.
T Consensus 37 lG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred ECCCCCCHHHHHHHHhCCcC
Confidence 69999999999999999743
No 493
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.019 Score=49.00 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 34 IGASGCGKSTFLRCFNRM 51 (246)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999999995
No 494
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.3 Score=43.71 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|.-|+||||++|.|.+..
T Consensus 194 lG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 194 LGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred ecCCCccHHHHHHHHhccC
Confidence 6899999999999999863
No 495
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.02 Score=47.83 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 43 ~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 496
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.019 Score=49.37 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 36 IGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999964
No 497
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.019 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 498
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.59 E-value=0.019 Score=49.01 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 35 ~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 35 IGPSGCGKTTLLRSINRM 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999999985
No 499
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.59 E-value=0.019 Score=49.44 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999963
No 500
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.59 E-value=0.064 Score=42.33 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+|++++|++... .+...+..+.+.+... ..+ +|.++|+||+|+.
T Consensus 7 ~~aD~il~VvD~~~-p~~~~~~~i~~~l~~~-~~~--~p~ilVlNKiDl~ 52 (157)
T cd01858 7 DSSDVVIQVLDARD-PMGTRCKHVEEYLKKE-KPH--KHLIFVLNKCDLV 52 (157)
T ss_pred hhCCEEEEEEECCC-CccccCHHHHHHHHhc-cCC--CCEEEEEEchhcC
Confidence 58999999977654 2344566666666653 222 7899999999985
Done!