Query 025189
Match_columns 256
No_of_seqs 252 out of 1946
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 100.0 2.2E-33 7.4E-38 241.3 15.9 215 1-215 42-256 (262)
2 1h65_A Chloroplast outer envel 100.0 1.3E-32 4.6E-37 237.3 16.8 221 1-222 45-265 (270)
3 3lxx_A GTPase IMAP family memb 99.9 1.6E-21 5.5E-26 164.6 15.3 146 1-150 35-183 (239)
4 3lxw_A GTPase IMAP family memb 99.8 7.1E-21 2.4E-25 161.9 13.6 144 1-149 27-176 (247)
5 2xtp_A GTPase IMAP family memb 99.8 1.7E-17 5.9E-22 141.4 17.4 144 1-149 28-176 (260)
6 1wf3_A GTP-binding protein; GT 99.7 2.6E-16 8.7E-21 137.6 14.7 117 1-123 13-130 (301)
7 2dyk_A GTP-binding protein; GT 99.7 1.1E-15 3.8E-20 119.6 13.7 115 1-123 7-121 (161)
8 4dhe_A Probable GTP-binding pr 99.7 4E-16 1.4E-20 129.2 11.6 117 1-123 35-157 (223)
9 3iev_A GTP-binding protein ERA 99.7 5.6E-16 1.9E-20 135.7 12.6 115 1-123 16-135 (308)
10 2gj8_A MNME, tRNA modification 99.6 1.1E-15 3.9E-20 122.2 11.9 118 1-123 10-128 (172)
11 3t5d_A Septin-7; GTP-binding p 99.6 1.6E-15 5.6E-20 130.5 11.7 117 1-123 14-157 (274)
12 1mky_A Probable GTP-binding pr 99.6 3.1E-15 1.1E-19 137.1 13.9 115 1-123 7-123 (439)
13 2qu8_A Putative nucleolar GTP- 99.6 3.4E-14 1.2E-18 118.5 15.7 118 1-124 35-156 (228)
14 1svi_A GTP-binding protein YSX 99.6 9.9E-15 3.4E-19 118.0 11.7 114 1-123 29-147 (195)
15 3iby_A Ferrous iron transport 99.6 7.8E-15 2.7E-19 125.2 10.4 112 1-123 7-123 (256)
16 3tkl_A RAS-related protein RAB 99.6 2.1E-14 7.2E-19 116.1 12.2 114 1-126 22-137 (196)
17 3tw8_B RAS-related protein RAB 99.6 1.3E-14 4.4E-19 115.4 10.5 110 1-123 15-126 (181)
18 3i8s_A Ferrous iron transport 99.6 2.2E-14 7.4E-19 123.6 12.1 112 1-123 9-125 (274)
19 2g6b_A RAS-related protein RAB 99.6 1.7E-14 5.7E-19 115.0 10.4 114 1-125 16-131 (180)
20 3pqc_A Probable GTP-binding pr 99.6 6.5E-14 2.2E-18 112.8 13.8 114 1-123 29-146 (195)
21 2hjg_A GTP-binding protein ENG 99.6 6.6E-15 2.3E-19 134.8 8.7 119 1-126 181-302 (436)
22 1z0j_A RAB-22, RAS-related pro 99.5 1.8E-14 6.2E-19 113.4 9.6 111 1-123 12-124 (170)
23 2lkc_A Translation initiation 99.5 1.3E-14 4.3E-19 115.5 8.6 107 1-123 14-120 (178)
24 4dcu_A GTP-binding protein ENG 99.5 6.6E-15 2.3E-19 135.5 7.8 115 1-123 29-144 (456)
25 4dcu_A GTP-binding protein ENG 99.5 1.4E-14 4.9E-19 133.3 9.9 120 1-127 201-323 (456)
26 3cph_A RAS-related protein SEC 99.5 5E-14 1.7E-18 115.4 12.2 111 1-123 26-138 (213)
27 2fg5_A RAB-22B, RAS-related pr 99.5 2.4E-14 8.2E-19 116.0 9.8 112 1-123 29-141 (192)
28 3a1s_A Iron(II) transport prot 99.5 1E-13 3.5E-18 118.4 13.9 112 1-123 11-123 (258)
29 2y8e_A RAB-protein 6, GH09086P 99.5 2.6E-14 8.9E-19 113.5 9.5 112 1-124 20-133 (179)
30 1g16_A RAS-related protein SEC 99.5 3.9E-14 1.3E-18 111.5 10.4 111 1-123 9-121 (170)
31 2hjg_A GTP-binding protein ENG 99.5 8.1E-15 2.8E-19 134.2 7.4 116 1-124 9-125 (436)
32 2wji_A Ferrous iron transport 99.5 7.1E-14 2.4E-18 110.6 11.9 113 1-123 9-121 (165)
33 2efe_B Small GTP-binding prote 99.5 6.1E-14 2.1E-18 111.8 11.4 113 1-125 18-132 (181)
34 1z2a_A RAS-related protein RAB 99.5 6.1E-14 2.1E-18 110.2 11.3 111 1-124 11-123 (168)
35 3t5g_A GTP-binding protein RHE 99.5 6.3E-14 2.2E-18 111.9 11.5 113 1-125 12-126 (181)
36 2bcg_Y Protein YP2, GTP-bindin 99.5 6.2E-14 2.1E-18 114.6 11.6 112 1-124 14-127 (206)
37 1ek0_A Protein (GTP-binding pr 99.5 7.2E-14 2.5E-18 109.8 11.3 112 1-124 9-122 (170)
38 1z08_A RAS-related protein RAB 99.5 2.3E-14 7.8E-19 113.0 8.3 112 1-124 12-125 (170)
39 1r2q_A RAS-related protein RAB 99.5 3.3E-14 1.1E-18 111.8 9.2 111 1-123 12-124 (170)
40 3gee_A MNME, tRNA modification 99.5 2.3E-14 7.8E-19 132.5 9.5 113 1-123 239-356 (476)
41 3clv_A RAB5 protein, putative; 99.5 1.1E-13 3.8E-18 111.8 12.4 107 1-121 13-158 (208)
42 2nzj_A GTP-binding protein REM 99.5 4E-14 1.4E-18 112.1 9.3 115 1-125 10-126 (175)
43 1ega_A Protein (GTP-binding pr 99.5 1.5E-14 5.1E-19 126.3 7.4 113 1-123 14-129 (301)
44 2fn4_A P23, RAS-related protei 99.5 7.7E-14 2.6E-18 110.9 10.9 111 1-124 15-128 (181)
45 2erx_A GTP-binding protein DI- 99.5 3E-14 1E-18 112.2 8.2 113 1-124 9-123 (172)
46 2oil_A CATX-8, RAS-related pro 99.5 5E-14 1.7E-18 113.9 9.6 112 1-124 31-144 (193)
47 3q72_A GTP-binding protein RAD 99.5 4.4E-14 1.5E-18 111.0 8.9 112 1-125 8-121 (166)
48 1z0f_A RAB14, member RAS oncog 99.5 4.1E-14 1.4E-18 112.3 8.8 110 1-123 21-133 (179)
49 2a5j_A RAS-related protein RAB 99.5 9.2E-14 3.1E-18 112.4 11.0 111 1-123 27-139 (191)
50 1u8z_A RAS-related protein RAL 99.5 3.3E-14 1.1E-18 111.4 8.0 112 1-124 10-123 (168)
51 1kao_A RAP2A; GTP-binding prot 99.5 7.9E-14 2.7E-18 109.1 10.0 111 1-123 9-121 (167)
52 4djt_A GTP-binding nuclear pro 99.5 6.7E-14 2.3E-18 115.4 10.0 111 1-123 17-130 (218)
53 3k53_A Ferrous iron transport 99.5 1.8E-13 6.3E-18 117.3 12.8 114 1-123 9-122 (271)
54 2fu5_C RAS-related protein RAB 99.5 2.3E-14 7.9E-19 114.7 6.6 112 1-124 14-127 (183)
55 3geh_A MNME, tRNA modification 99.5 1E-14 3.5E-19 134.3 5.1 113 1-123 230-343 (462)
56 2gf9_A RAS-related protein RAB 99.5 7.4E-14 2.5E-18 112.6 9.6 111 1-123 28-140 (189)
57 2bme_A RAB4A, RAS-related prot 99.5 3.3E-14 1.1E-18 113.9 7.3 111 1-123 16-128 (186)
58 2il1_A RAB12; G-protein, GDP, 99.5 4.6E-14 1.6E-18 114.4 8.2 111 1-123 32-144 (192)
59 1xzp_A Probable tRNA modificat 99.5 3.5E-14 1.2E-18 131.4 8.3 109 1-123 249-363 (482)
60 1c1y_A RAS-related protein RAP 99.5 6.8E-14 2.3E-18 109.8 8.7 111 1-123 9-121 (167)
61 2a9k_A RAS-related protein RAL 99.5 1E-13 3.5E-18 110.8 9.8 111 1-123 24-136 (187)
62 1mky_A Probable GTP-binding pr 99.5 1.3E-13 4.5E-18 126.3 11.6 111 1-123 186-305 (439)
63 2bov_A RAla, RAS-related prote 99.5 1.2E-13 4.1E-18 112.5 10.1 112 1-124 20-133 (206)
64 1z06_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 111.3 10.1 113 1-123 26-140 (189)
65 2o52_A RAS-related protein RAB 99.5 6.9E-14 2.4E-18 114.2 8.6 111 1-123 31-143 (200)
66 4dsu_A GTPase KRAS, isoform 2B 99.5 1.7E-13 6E-18 109.7 10.9 111 1-123 10-122 (189)
67 2hxs_A RAB-26, RAS-related pro 99.5 8.6E-14 2.9E-18 110.6 8.7 113 1-123 12-128 (178)
68 2h57_A ADP-ribosylation factor 99.5 1.2E-13 3.9E-18 111.6 9.3 112 1-123 27-139 (190)
69 3qq5_A Small GTP-binding prote 99.5 4E-14 1.4E-18 128.9 7.2 115 1-125 40-155 (423)
70 1upt_A ARL1, ADP-ribosylation 99.5 1.3E-13 4.5E-18 108.7 9.2 109 1-123 13-121 (171)
71 3cpj_B GTP-binding protein YPT 99.5 1.2E-13 4.2E-18 114.6 9.4 111 1-123 19-131 (223)
72 1ksh_A ARF-like protein 2; sma 99.5 1.2E-13 4E-18 110.9 9.0 109 1-123 24-132 (186)
73 3kkq_A RAS-related protein M-R 99.5 3.3E-13 1.1E-17 107.9 11.4 112 1-124 24-137 (183)
74 1zj6_A ADP-ribosylation factor 99.5 3.7E-13 1.3E-17 108.3 11.7 109 1-123 22-130 (187)
75 2yc2_C IFT27, small RAB-relate 99.5 1E-13 3.6E-18 112.8 8.5 115 1-124 26-146 (208)
76 3oes_A GTPase rhebl1; small GT 99.5 8.9E-14 3.1E-18 113.4 8.0 112 1-124 30-143 (201)
77 3r7w_A Gtpase1, GTP-binding pr 99.5 1.7E-13 5.6E-18 119.9 10.2 118 1-123 9-128 (307)
78 4bas_A ADP-ribosylation factor 99.5 3.2E-13 1.1E-17 109.3 11.2 112 1-123 23-140 (199)
79 3con_A GTPase NRAS; structural 99.5 4.2E-13 1.5E-17 108.0 11.7 112 1-124 27-140 (190)
80 2wjg_A FEOB, ferrous iron tran 99.5 4.5E-13 1.5E-17 107.5 11.8 112 1-123 13-125 (188)
81 1zbd_A Rabphilin-3A; G protein 99.5 2.1E-13 7.2E-18 111.1 9.8 112 1-124 14-127 (203)
82 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.7E-13 5.9E-18 108.7 9.1 113 1-123 13-129 (177)
83 2hup_A RAS-related protein RAB 99.5 1.3E-13 4.5E-18 112.7 8.5 111 1-123 35-147 (201)
84 3b1v_A Ferrous iron uptake tra 99.5 3.7E-13 1.3E-17 115.8 11.5 111 1-123 9-120 (272)
85 2ce2_X GTPase HRAS; signaling 99.5 2.4E-13 8.1E-18 106.1 9.4 112 1-124 9-122 (166)
86 1r8s_A ADP-ribosylation factor 99.5 1.7E-13 5.7E-18 107.5 8.4 109 1-123 6-114 (164)
87 3q85_A GTP-binding protein REM 99.5 2.5E-13 8.5E-18 107.0 9.3 112 1-123 8-122 (169)
88 2q3h_A RAS homolog gene family 99.4 3.3E-13 1.1E-17 109.7 10.2 109 1-123 26-137 (201)
89 3bc1_A RAS-related protein RAB 99.4 1.8E-13 6.3E-18 109.9 8.4 112 1-123 17-140 (195)
90 1zd9_A ADP-ribosylation factor 99.4 4.9E-13 1.7E-17 107.9 10.9 110 1-123 28-137 (188)
91 2h17_A ADP-ribosylation factor 99.4 2E-13 6.8E-18 109.4 8.5 109 1-123 27-135 (181)
92 2atx_A Small GTP binding prote 99.4 2.3E-13 7.9E-18 110.0 8.8 109 1-123 24-135 (194)
93 2atv_A RERG, RAS-like estrogen 99.4 4.7E-13 1.6E-17 108.6 10.5 111 1-124 34-146 (196)
94 2p5s_A RAS and EF-hand domain 99.4 9.8E-14 3.4E-18 113.0 6.5 111 1-123 34-146 (199)
95 3c5c_A RAS-like protein 12; GD 99.4 7.8E-13 2.7E-17 106.7 11.7 111 1-123 27-140 (187)
96 2fv8_A H6, RHO-related GTP-bin 99.4 2.2E-13 7.4E-18 111.8 8.5 109 1-123 31-142 (207)
97 1m2o_B GTP-binding protein SAR 99.4 3.7E-13 1.3E-17 109.0 9.6 109 1-123 29-137 (190)
98 4dkx_A RAS-related protein RAB 99.4 4.9E-13 1.7E-17 111.3 10.4 114 1-127 19-135 (216)
99 2b6h_A ADP-ribosylation factor 99.4 6.2E-13 2.1E-17 107.9 10.8 109 1-123 35-143 (192)
100 3l0i_B RAS-related protein RAB 99.4 1.7E-14 5.9E-19 117.5 1.5 113 1-125 39-153 (199)
101 3reg_A RHO-like small GTPase; 99.4 4.5E-13 1.5E-17 108.4 9.9 110 1-124 29-141 (194)
102 1vg8_A RAS-related protein RAB 99.4 4.3E-13 1.5E-17 109.3 9.9 113 1-123 14-130 (207)
103 1ky3_A GTP-binding protein YPT 99.4 2.1E-13 7.2E-18 108.4 7.7 113 1-123 14-131 (182)
104 2x77_A ADP-ribosylation factor 99.4 2.7E-13 9.3E-18 109.2 8.3 109 1-123 28-136 (189)
105 2ew1_A RAS-related protein RAB 99.4 1.7E-13 5.7E-18 112.5 7.1 111 1-123 32-144 (201)
106 2ged_A SR-beta, signal recogni 99.4 1.7E-13 5.7E-18 110.7 7.0 113 1-124 54-170 (193)
107 1moz_A ARL1, ADP-ribosylation 99.4 2.7E-13 9.4E-18 108.2 8.1 109 1-123 24-132 (183)
108 2e87_A Hypothetical protein PH 99.4 1.4E-12 4.9E-17 116.3 13.6 117 1-123 173-293 (357)
109 1jwy_B Dynamin A GTPase domain 99.4 5E-13 1.7E-17 116.6 10.4 77 41-124 129-212 (315)
110 1mh1_A RAC1; GTP-binding, GTPa 99.4 2.6E-13 8.7E-18 108.5 7.6 109 1-123 11-122 (186)
111 3llu_A RAS-related GTP-binding 99.4 9E-13 3.1E-17 107.1 10.8 113 1-123 26-142 (196)
112 1fzq_A ADP-ribosylation factor 99.4 6E-13 2.1E-17 106.9 9.6 109 1-123 22-130 (181)
113 2j1l_A RHO-related GTP-binding 99.4 4.5E-13 1.5E-17 110.6 8.9 109 1-123 40-151 (214)
114 3gj0_A GTP-binding nuclear pro 99.4 2E-13 7E-18 112.9 6.8 111 1-123 21-132 (221)
115 2gf0_A GTP-binding protein DI- 99.4 1.6E-13 5.4E-18 111.1 5.8 112 1-123 14-127 (199)
116 1f6b_A SAR1; gtpases, N-termin 99.4 5.9E-13 2E-17 108.6 9.3 109 1-123 31-139 (198)
117 3dz8_A RAS-related protein RAB 99.4 2.2E-13 7.7E-18 110.1 6.6 112 1-123 29-141 (191)
118 1x3s_A RAS-related protein RAB 99.4 8.2E-13 2.8E-17 106.4 9.8 112 1-123 21-134 (195)
119 3cbq_A GTP-binding protein REM 99.4 8.9E-13 3E-17 107.4 9.7 114 1-124 29-144 (195)
120 2fh5_B SR-beta, signal recogni 99.4 5.3E-13 1.8E-17 109.7 8.3 109 1-124 13-129 (214)
121 2gco_A H9, RHO-related GTP-bin 99.4 3.7E-13 1.3E-17 109.8 7.1 109 1-123 31-142 (201)
122 1lnz_A SPO0B-associated GTP-bi 99.4 4.2E-13 1.4E-17 119.1 7.7 116 1-123 164-287 (342)
123 4a9a_A Ribosome-interacting GT 99.4 3.7E-13 1.3E-17 120.6 7.2 112 1-122 78-194 (376)
124 4gzl_A RAS-related C3 botulinu 99.4 3.2E-13 1.1E-17 110.6 6.3 109 1-123 36-147 (204)
125 2aka_B Dynamin-1; fusion prote 99.4 1.8E-12 6.2E-17 112.0 10.9 75 42-124 124-206 (299)
126 3t34_A Dynamin-related protein 99.4 2.4E-12 8.3E-17 114.8 11.9 79 42-126 135-219 (360)
127 2iwr_A Centaurin gamma 1; ANK 99.4 2.5E-12 8.6E-17 102.2 10.6 106 1-123 13-121 (178)
128 2j69_A Bacterial dynamin-like 99.4 7.2E-13 2.5E-17 127.8 8.6 112 1-123 75-243 (695)
129 2f7s_A C25KG, RAS-related prot 99.4 6.8E-13 2.3E-17 109.2 7.3 110 1-123 31-154 (217)
130 2qtf_A Protein HFLX, GTP-bindi 99.4 3.1E-12 1.1E-16 114.4 12.0 117 1-123 185-305 (364)
131 1m7b_A RND3/RHOE small GTP-bin 99.4 5.5E-13 1.9E-17 107.1 6.4 109 1-123 13-124 (184)
132 2cxx_A Probable GTP-binding pr 99.4 4.4E-12 1.5E-16 101.7 11.7 111 1-123 7-135 (190)
133 2j0v_A RAC-like GTP-binding pr 99.4 7.5E-13 2.6E-17 108.6 7.3 109 1-123 15-126 (212)
134 3o47_A ADP-ribosylation factor 99.4 2.5E-12 8.5E-17 113.5 11.1 108 1-123 171-279 (329)
135 3bwd_D RAC-like GTP-binding pr 99.4 2.8E-13 9.6E-18 108.0 3.8 109 1-123 14-125 (182)
136 1nrj_B SR-beta, signal recogni 99.4 2.9E-12 9.9E-17 105.5 10.0 110 1-124 18-134 (218)
137 3q3j_B RHO-related GTP-binding 99.3 1.3E-12 4.5E-17 107.9 7.5 109 1-123 33-144 (214)
138 2qpt_A EH domain-containing pr 99.3 1.7E-12 5.7E-17 122.1 8.7 116 1-123 71-231 (550)
139 2x2e_A Dynamin-1; nitration, h 99.3 3.9E-12 1.3E-16 113.3 10.6 76 42-124 129-211 (353)
140 1gwn_A RHO-related GTP-binding 99.3 1.1E-12 3.7E-17 107.9 6.4 109 1-123 34-145 (205)
141 1wxq_A GTP-binding protein; st 99.3 2.6E-12 9E-17 116.2 7.8 83 1-87 6-113 (397)
142 2cjw_A GTP-binding protein GEM 99.3 4.8E-12 1.6E-16 102.7 8.5 113 1-123 12-127 (192)
143 3ihw_A Centg3; RAS, centaurin, 99.3 1.3E-11 4.3E-16 99.5 10.7 105 1-123 26-132 (184)
144 2qag_A Septin-2, protein NEDD5 99.3 8E-12 2.7E-16 111.6 10.4 117 1-123 43-187 (361)
145 2g3y_A GTP-binding protein GEM 99.3 3E-12 1E-16 106.1 7.0 114 1-123 43-158 (211)
146 3t1o_A Gliding protein MGLA; G 99.3 1.1E-11 3.9E-16 99.6 9.8 113 1-123 20-148 (198)
147 3lvq_E ARF-GAP with SH3 domain 99.3 8.2E-12 2.8E-16 115.8 9.8 109 1-123 328-436 (497)
148 2f9l_A RAB11B, member RAS onco 99.3 2.5E-11 8.6E-16 98.7 11.3 111 1-123 11-123 (199)
149 2zej_A Dardarin, leucine-rich 99.3 2.6E-12 8.9E-17 103.3 5.2 111 1-123 8-125 (184)
150 3th5_A RAS-related C3 botulinu 98.9 3.6E-13 1.2E-17 110.0 0.0 109 1-123 36-147 (204)
151 3zvr_A Dynamin-1; hydrolase, D 99.3 2.8E-11 9.5E-16 116.9 12.1 117 1-125 57-232 (772)
152 2wkq_A NPH1-1, RAS-related C3 99.2 8.6E-12 2.9E-16 108.9 7.0 109 1-123 161-272 (332)
153 3j2k_7 ERF3, eukaryotic polype 99.2 8.7E-11 3E-15 107.5 13.7 110 1-123 23-168 (439)
154 3p26_A Elongation factor 1 alp 99.2 1.6E-11 5.6E-16 113.7 8.5 110 1-123 39-184 (483)
155 1pui_A ENGB, probable GTP-bind 99.2 6.8E-11 2.3E-15 96.6 10.8 114 1-123 32-150 (210)
156 1oix_A RAS-related protein RAB 99.2 9.3E-11 3.2E-15 94.9 11.3 111 1-123 35-147 (191)
157 1zun_B Sulfate adenylate trans 99.2 5.3E-11 1.8E-15 108.8 9.9 109 1-123 30-170 (434)
158 3tr5_A RF-3, peptide chain rel 99.2 2.2E-11 7.4E-16 113.9 6.8 108 1-123 19-147 (528)
159 1wb1_A Translation elongation 99.2 1.2E-10 4.1E-15 107.8 11.5 108 1-123 25-138 (482)
160 3izq_1 HBS1P, elongation facto 99.2 9.3E-11 3.2E-15 111.5 9.8 110 1-123 173-318 (611)
161 3dpu_A RAB family protein; roc 99.1 1.6E-10 5.6E-15 108.2 10.8 110 1-127 47-167 (535)
162 3izy_P Translation initiation 99.1 5E-12 1.7E-16 118.1 0.2 108 1-124 10-118 (537)
163 2c78_A Elongation factor TU-A; 99.1 1.1E-10 3.9E-15 105.6 7.8 108 1-123 17-141 (405)
164 2qag_C Septin-7; cell cycle, c 99.1 1.7E-10 5.7E-15 104.9 8.8 117 1-123 37-180 (418)
165 2xex_A Elongation factor G; GT 99.1 1.5E-10 5.3E-15 111.5 8.5 108 1-123 16-140 (693)
166 3r7w_B Gtpase2, GTP-binding pr 99.1 2.8E-10 9.5E-15 99.9 9.2 110 1-123 5-119 (331)
167 3sjy_A Translation initiation 99.1 2E-10 6.8E-15 103.9 8.4 110 1-123 14-142 (403)
168 1zo1_I IF2, translation initia 99.1 2.2E-11 7.5E-16 112.9 1.6 107 1-123 10-116 (501)
169 2h5e_A Peptide chain release f 99.1 2.6E-10 9E-15 106.6 8.9 108 1-123 19-147 (529)
170 3ec1_A YQEH GTPase; atnos1, at 99.1 6.2E-12 2.1E-16 112.7 -2.9 114 1-123 168-287 (369)
171 1f60_A Elongation factor EEF1A 99.1 1.1E-10 3.8E-15 107.4 5.4 109 1-123 13-158 (458)
172 1udx_A The GTP-binding protein 99.0 6.8E-10 2.3E-14 100.8 10.1 115 1-123 163-282 (416)
173 3h2y_A GTPase family protein; 99.0 7.5E-12 2.6E-16 112.1 -2.9 114 1-123 166-286 (368)
174 1d2e_A Elongation factor TU (E 99.0 7.1E-10 2.4E-14 100.1 9.9 108 1-123 9-132 (397)
175 1jny_A EF-1-alpha, elongation 99.0 4.7E-10 1.6E-14 102.5 7.8 110 1-123 12-157 (435)
176 2elf_A Protein translation elo 99.0 5.3E-10 1.8E-14 100.1 8.0 97 1-122 27-125 (370)
177 1jal_A YCHF protein; nucleotid 99.0 2.2E-10 7.6E-15 102.1 5.3 80 1-87 8-108 (363)
178 1kk1_A EIF2gamma; initiation o 99.0 2.9E-09 1E-13 96.4 12.8 110 1-123 16-150 (410)
179 1s0u_A EIF-2-gamma, translatio 99.0 4.4E-09 1.5E-13 95.2 13.6 111 1-124 14-149 (408)
180 1dar_A EF-G, elongation factor 99.0 7.4E-10 2.5E-14 106.7 8.5 108 1-123 18-142 (691)
181 3sop_A Neuronal-specific septi 99.0 2.1E-09 7.3E-14 92.2 10.0 117 1-123 8-153 (270)
182 3mca_A HBS1, elongation factor 99.0 2.8E-11 9.7E-16 114.6 -2.1 110 1-123 183-328 (592)
183 2qnr_A Septin-2, protein NEDD5 99.0 1.7E-09 5.9E-14 94.1 8.7 117 1-123 24-168 (301)
184 2rdo_7 EF-G, elongation factor 98.9 3.8E-09 1.3E-13 102.0 11.1 108 1-123 16-147 (704)
185 1g7s_A Translation initiation 98.9 1.4E-09 4.7E-14 103.0 7.9 107 1-123 11-135 (594)
186 1r5b_A Eukaryotic peptide chai 98.9 7E-10 2.4E-14 102.3 5.5 110 1-123 49-194 (467)
187 1puj_A YLQF, conserved hypothe 98.9 9.8E-10 3.4E-14 94.8 5.0 59 1-62 126-184 (282)
188 2ohf_A Protein OLA1, GTP-bindi 98.9 1.3E-09 4.3E-14 98.2 5.6 79 1-86 28-127 (396)
189 1n0u_A EF-2, elongation factor 98.9 2.3E-09 7.8E-14 105.4 7.3 108 1-123 25-163 (842)
190 2ywe_A GTP-binding protein LEP 98.9 2.7E-09 9.2E-14 100.9 7.6 108 1-123 12-138 (600)
191 2qag_B Septin-6, protein NEDD5 98.9 7.4E-09 2.5E-13 94.0 10.1 116 1-123 48-189 (427)
192 2dby_A GTP-binding protein; GD 98.9 4E-09 1.4E-13 94.2 7.8 80 1-87 7-111 (368)
193 3cb4_D GTP-binding protein LEP 98.9 2.3E-09 7.7E-14 101.6 6.3 108 1-123 10-136 (599)
194 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.1E-09 7.1E-14 96.8 5.5 81 1-87 26-127 (392)
195 2www_A Methylmalonic aciduria 98.8 1.7E-09 5.9E-14 96.1 3.1 62 40-123 164-225 (349)
196 3avx_A Elongation factor TS, e 98.8 1E-08 3.5E-13 102.5 8.5 108 1-123 302-425 (1289)
197 2dy1_A Elongation factor G; tr 98.8 1.3E-08 4.4E-13 97.7 9.0 108 1-123 15-139 (665)
198 1f5n_A Interferon-induced guan 98.7 1.6E-08 5.6E-13 95.3 7.1 97 1-104 44-148 (592)
199 3c5h_A Glucocorticoid receptor 98.7 2.3E-09 7.8E-14 90.9 -0.5 47 75-123 162-211 (255)
200 3cnl_A YLQF, putative uncharac 98.7 7.1E-09 2.4E-13 88.5 2.5 58 1-61 105-163 (262)
201 2p67_A LAO/AO transport system 98.6 2E-08 6.8E-13 88.9 5.2 62 40-123 146-207 (341)
202 3p32_A Probable GTPase RV1496/ 98.6 3.1E-08 1E-12 88.1 5.4 62 40-123 169-230 (355)
203 2qm8_A GTPase/ATPase; G protei 98.6 1.9E-08 6.6E-13 88.9 3.6 62 40-123 145-206 (337)
204 1tq4_A IIGP1, interferon-induc 98.6 1.7E-07 5.8E-12 84.9 9.3 109 1-122 75-187 (413)
205 2j37_W Signal recognition part 98.5 2.4E-07 8.1E-12 85.9 9.7 111 1-123 107-253 (504)
206 3vqt_A RF-3, peptide chain rel 98.5 3.7E-07 1.3E-11 85.6 11.0 108 1-123 37-165 (548)
207 3szr_A Interferon-induced GTP- 98.4 1.1E-06 3.7E-11 83.5 11.5 75 44-124 148-228 (608)
208 1yrb_A ATP(GTP)binding protein 98.4 5.5E-08 1.9E-12 82.0 1.3 24 1-24 20-48 (262)
209 3dm5_A SRP54, signal recogniti 98.3 7.5E-07 2.6E-11 81.2 7.4 72 41-123 181-252 (443)
210 3j25_A Tetracycline resistance 98.2 4.5E-07 1.6E-11 86.6 3.4 108 1-123 8-132 (638)
211 2v3c_C SRP54, signal recogniti 98.2 1.3E-06 4.5E-11 79.5 6.1 73 41-123 179-251 (432)
212 2wsm_A Hydrogenase expression/ 98.2 9.4E-07 3.2E-11 72.4 4.1 18 1-18 36-53 (221)
213 4fn5_A EF-G 1, elongation fact 98.1 8.3E-06 2.8E-10 78.8 9.5 108 1-123 19-150 (709)
214 3kl4_A SRP54, signal recogniti 98.1 5.9E-06 2E-10 75.1 7.6 74 41-123 178-251 (433)
215 3q5d_A Atlastin-1; G protein, 98.0 8.2E-06 2.8E-10 74.5 6.3 95 1-103 73-195 (447)
216 1j8m_F SRP54, signal recogniti 97.8 5.9E-05 2E-09 65.2 8.6 74 41-123 179-252 (297)
217 1t9h_A YLOQ, probable GTPase E 97.7 5.2E-06 1.8E-10 72.2 0.5 53 1-57 179-238 (307)
218 3e70_C DPA, signal recognition 97.7 3.5E-05 1.2E-09 67.7 5.3 71 42-123 211-281 (328)
219 1rj9_A FTSY, signal recognitio 97.7 0.00015 5E-09 62.9 9.0 74 42-123 184-260 (304)
220 2yv5_A YJEQ protein; hydrolase 97.6 4E-05 1.4E-09 66.4 4.9 52 1-56 171-229 (302)
221 2yhs_A FTSY, cell division pro 97.6 0.00011 3.6E-09 67.8 7.9 72 41-123 374-451 (503)
222 2xxa_A Signal recognition part 97.6 6.8E-05 2.3E-09 68.2 5.9 72 41-123 182-253 (433)
223 1u0l_A Probable GTPase ENGC; p 97.6 4.9E-05 1.7E-09 65.8 4.1 54 1-57 175-235 (301)
224 2rcn_A Probable GTPase ENGC; Y 97.5 3.7E-05 1.3E-09 68.2 2.5 52 1-55 221-280 (358)
225 2ffh_A Protein (FFH); SRP54, s 97.3 0.00018 6.3E-09 65.2 4.5 72 41-123 179-250 (425)
226 2px0_A Flagellar biosynthesis 97.3 0.00033 1.1E-08 60.5 5.8 72 41-123 181-252 (296)
227 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00027 9.2E-09 62.8 5.0 78 34-123 192-281 (362)
228 1azs_C GS-alpha; complex (lyas 97.2 0.00037 1.3E-08 62.7 5.9 78 35-123 209-297 (402)
229 2hf9_A Probable hydrogenase ni 97.2 0.00034 1.2E-08 57.0 5.0 18 1-18 44-61 (226)
230 1cip_A Protein (guanine nucleo 97.2 0.0002 7E-09 63.3 3.8 81 34-123 184-273 (353)
231 1vma_A Cell division protein F 97.2 0.00017 5.7E-09 62.7 2.9 72 41-123 185-262 (306)
232 4fid_A G protein alpha subunit 97.0 0.0014 4.6E-08 57.7 7.3 78 34-123 152-241 (340)
233 3ohm_A Guanine nucleotide-bind 97.0 0.00072 2.5E-08 59.2 5.4 81 34-123 158-247 (327)
234 1zu4_A FTSY; GTPase, signal re 97.0 0.0012 4.2E-08 57.5 6.6 72 41-123 190-267 (320)
235 1ls1_A Signal recognition part 96.9 0.00073 2.5E-08 58.2 4.3 72 41-123 179-250 (295)
236 4dzz_A Plasmid partitioning pr 96.9 0.0031 1.1E-07 50.4 7.6 68 42-122 75-142 (206)
237 3ney_A 55 kDa erythrocyte memb 96.9 3.7E-05 1.3E-09 62.6 -3.9 51 1-53 25-76 (197)
238 2og2_A Putative signal recogni 96.8 0.0041 1.4E-07 55.1 8.8 18 1-18 163-180 (359)
239 2xtz_A Guanine nucleotide-bind 96.8 0.0012 3.9E-08 58.5 4.9 71 42-123 182-263 (354)
240 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0043 1.5E-07 56.5 8.6 96 1-103 73-195 (457)
241 3b9q_A Chloroplast SRP recepto 96.7 0.0025 8.4E-08 55.1 6.0 18 1-18 106-123 (302)
242 1kgd_A CASK, peripheral plasma 96.1 0.0014 4.9E-08 51.8 1.2 18 1-18 11-28 (180)
243 1lvg_A Guanylate kinase, GMP k 96.1 0.0014 4.9E-08 52.7 1.2 18 1-18 10-27 (198)
244 1znw_A Guanylate kinase, GMP k 96.0 0.0016 5.5E-08 52.7 1.2 18 1-18 26-43 (207)
245 3tif_A Uncharacterized ABC tra 95.9 0.0025 8.6E-08 52.9 1.9 19 1-19 37-55 (235)
246 1z6g_A Guanylate kinase; struc 95.8 0.0024 8.3E-08 52.2 1.2 18 1-18 29-46 (218)
247 1s96_A Guanylate kinase, GMP k 95.8 0.0025 8.4E-08 52.5 1.2 19 1-19 22-40 (219)
248 3a00_A Guanylate kinase, GMP k 95.8 0.0024 8.1E-08 50.7 1.1 18 1-18 7-24 (186)
249 2pcj_A ABC transporter, lipopr 95.8 0.0027 9.3E-08 52.3 1.4 19 1-19 36-54 (224)
250 1ye8_A Protein THEP1, hypothet 95.7 0.0027 9.2E-08 50.4 1.2 18 1-18 6-23 (178)
251 4g1u_C Hemin import ATP-bindin 95.7 0.0037 1.3E-07 52.9 1.9 19 1-19 43-61 (266)
252 2cbz_A Multidrug resistance-as 95.7 0.0038 1.3E-07 51.9 1.9 19 1-19 37-55 (237)
253 3tr0_A Guanylate kinase, GMP k 95.7 0.003 1E-07 50.5 1.2 18 1-18 13-30 (205)
254 1b0u_A Histidine permease; ABC 95.7 0.0038 1.3E-07 52.7 1.9 19 1-19 38-56 (262)
255 3gfo_A Cobalt import ATP-bindi 95.7 0.0038 1.3E-07 53.2 1.9 19 1-19 40-58 (275)
256 2onk_A Molybdate/tungstate ABC 95.7 0.0039 1.3E-07 52.0 1.9 19 1-19 30-48 (240)
257 1g6h_A High-affinity branched- 95.6 0.0038 1.3E-07 52.5 1.9 19 1-19 39-57 (257)
258 2kjq_A DNAA-related protein; s 95.6 0.02 6.8E-07 43.9 5.8 18 1-18 42-59 (149)
259 1ex7_A Guanylate kinase; subst 95.6 0.0011 3.8E-08 53.2 -1.5 18 1-18 7-24 (186)
260 1sgw_A Putative ABC transporte 95.6 0.0043 1.5E-07 50.9 1.9 19 1-19 41-59 (214)
261 1mv5_A LMRA, multidrug resista 95.6 0.0043 1.5E-07 51.7 1.9 19 1-19 34-52 (243)
262 2ff7_A Alpha-hemolysin translo 95.6 0.0043 1.5E-07 51.9 1.9 19 1-19 41-59 (247)
263 1u0l_A Probable GTPase ENGC; p 95.6 0.019 6.5E-07 49.3 6.0 64 44-123 64-128 (301)
264 4gp7_A Metallophosphoesterase; 95.6 0.0045 1.5E-07 48.5 1.9 18 1-18 15-32 (171)
265 2pze_A Cystic fibrosis transme 95.5 0.0045 1.6E-07 51.1 1.9 19 1-19 40-58 (229)
266 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0046 1.6E-07 51.8 1.9 18 1-18 35-52 (250)
267 2olj_A Amino acid ABC transpor 95.5 0.0048 1.6E-07 52.2 1.9 19 1-19 56-74 (263)
268 1ji0_A ABC transporter; ATP bi 95.5 0.0048 1.7E-07 51.3 1.9 19 1-19 38-56 (240)
269 2qi9_C Vitamin B12 import ATP- 95.5 0.0049 1.7E-07 51.7 1.9 20 1-20 32-51 (249)
270 1vpl_A ABC transporter, ATP-bi 95.5 0.0049 1.7E-07 51.9 1.9 19 1-19 47-65 (256)
271 2zu0_C Probable ATP-dependent 95.4 0.0052 1.8E-07 52.0 1.9 18 1-18 52-69 (267)
272 2ghi_A Transport protein; mult 95.4 0.0053 1.8E-07 51.8 1.9 19 1-19 52-70 (260)
273 2ixe_A Antigen peptide transpo 95.4 0.0054 1.9E-07 52.0 1.9 19 1-19 51-69 (271)
274 2eyu_A Twitching motility prot 95.4 0.0043 1.5E-07 52.3 1.2 18 1-18 31-48 (261)
275 2ihy_A ABC transporter, ATP-bi 95.3 0.0057 2E-07 52.1 1.9 19 1-19 53-71 (279)
276 2nq2_C Hypothetical ABC transp 95.3 0.0057 2E-07 51.4 1.9 19 1-19 37-55 (253)
277 1zp6_A Hypothetical protein AT 95.3 0.0053 1.8E-07 48.5 1.6 18 1-18 15-32 (191)
278 2yz2_A Putative ABC transporte 95.3 0.0058 2E-07 51.7 1.9 19 1-19 39-57 (266)
279 3tau_A Guanylate kinase, GMP k 95.3 0.0055 1.9E-07 49.6 1.6 19 1-19 14-32 (208)
280 3c8u_A Fructokinase; YP_612366 95.1 0.0047 1.6E-07 49.9 0.7 18 1-18 28-45 (208)
281 2pjz_A Hypothetical protein ST 95.1 0.0079 2.7E-07 50.8 1.9 19 1-19 36-54 (263)
282 1htw_A HI0065; nucleotide-bind 95.0 0.0064 2.2E-07 47.3 1.2 19 1-19 39-57 (158)
283 3nh6_A ATP-binding cassette SU 95.0 0.0053 1.8E-07 53.1 0.7 18 1-18 86-103 (306)
284 3b85_A Phosphate starvation-in 95.0 0.0046 1.6E-07 50.4 0.2 18 1-18 28-45 (208)
285 3tui_C Methionine import ATP-b 95.0 0.0085 2.9E-07 53.1 1.9 19 1-19 60-78 (366)
286 1z47_A CYSA, putative ABC-tran 94.9 0.0088 3E-07 52.8 1.9 19 1-19 47-65 (355)
287 3rlf_A Maltose/maltodextrin im 94.9 0.0091 3.1E-07 53.2 1.9 19 1-19 35-53 (381)
288 3fvq_A Fe(3+) IONS import ATP- 94.8 0.0079 2.7E-07 53.2 1.4 19 1-19 36-54 (359)
289 2it1_A 362AA long hypothetical 94.8 0.0098 3.4E-07 52.7 1.9 19 1-19 35-53 (362)
290 2yyz_A Sugar ABC transporter, 94.8 0.0098 3.4E-07 52.6 1.9 19 1-19 35-53 (359)
291 2bbs_A Cystic fibrosis transme 94.8 0.0086 2.9E-07 51.4 1.4 19 1-19 70-88 (290)
292 3jvv_A Twitching mobility prot 94.8 0.0079 2.7E-07 53.1 1.2 18 1-18 129-146 (356)
293 1g29_1 MALK, maltose transport 94.7 0.01 3.5E-07 52.7 1.9 19 1-19 35-53 (372)
294 2v9p_A Replication protein E1; 94.7 0.008 2.7E-07 52.0 1.1 18 1-18 132-149 (305)
295 3asz_A Uridine kinase; cytidin 94.7 0.007 2.4E-07 48.7 0.7 18 1-18 12-29 (211)
296 2gza_A Type IV secretion syste 94.7 0.0087 3E-07 52.9 1.3 19 1-19 181-199 (361)
297 1v43_A Sugar-binding transport 94.7 0.011 3.7E-07 52.6 1.9 19 1-19 43-61 (372)
298 2j41_A Guanylate kinase; GMP, 94.6 0.0091 3.1E-07 47.6 1.2 19 1-19 12-30 (207)
299 3lnc_A Guanylate kinase, GMP k 94.6 0.007 2.4E-07 49.6 0.5 18 1-18 33-51 (231)
300 3qf7_A RAD50; ABC-ATPase, ATPa 94.6 0.059 2E-06 47.5 6.4 16 1-16 29-44 (365)
301 2bdt_A BH3686; alpha-beta prot 94.6 0.0096 3.3E-07 47.0 1.2 17 1-17 8-24 (189)
302 3cwq_A Para family chromosome 94.6 0.041 1.4E-06 44.4 5.0 65 42-122 67-132 (209)
303 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.009 3.1E-07 52.2 1.0 19 1-19 177-195 (330)
304 2i3b_A HCR-ntpase, human cance 94.5 0.01 3.5E-07 47.5 1.2 18 1-18 7-24 (189)
305 3d31_A Sulfate/molybdate ABC t 94.4 0.0092 3.1E-07 52.6 0.8 19 1-19 32-50 (348)
306 2qor_A Guanylate kinase; phosp 94.4 0.014 4.8E-07 46.8 1.8 18 1-18 18-35 (204)
307 3gd7_A Fusion complex of cysti 94.3 0.013 4.3E-07 52.5 1.4 19 1-19 53-71 (390)
308 1np6_A Molybdopterin-guanine d 94.3 0.013 4.3E-07 46.4 1.2 18 1-18 12-29 (174)
309 1kag_A SKI, shikimate kinase I 94.3 0.013 4.3E-07 45.4 1.2 18 1-18 10-27 (173)
310 1p9r_A General secretion pathw 94.2 0.012 4.2E-07 53.1 1.2 18 1-18 173-190 (418)
311 4a74_A DNA repair and recombin 94.2 0.011 3.7E-07 47.9 0.7 18 1-18 31-48 (231)
312 2ewv_A Twitching motility prot 94.2 0.013 4.3E-07 52.1 1.1 18 1-18 142-159 (372)
313 4eun_A Thermoresistant glucoki 94.1 0.014 4.7E-07 46.7 1.2 18 1-18 35-52 (200)
314 3ec2_A DNA replication protein 94.1 0.016 5.6E-07 45.3 1.6 18 1-18 44-61 (180)
315 3aez_A Pantothenate kinase; tr 94.1 0.014 4.6E-07 50.6 1.2 18 1-18 96-113 (312)
316 1oxx_K GLCV, glucose, ABC tran 94.1 0.009 3.1E-07 52.7 0.0 19 1-19 37-55 (353)
317 2oap_1 GSPE-2, type II secreti 94.1 0.013 4.5E-07 54.2 1.2 18 1-18 266-283 (511)
318 2f1r_A Molybdopterin-guanine d 94.1 0.0056 1.9E-07 48.3 -1.2 18 1-18 8-25 (171)
319 2bbw_A Adenylate kinase 4, AK4 94.1 0.019 6.5E-07 47.5 2.0 19 1-19 33-54 (246)
320 3uie_A Adenylyl-sulfate kinase 94.0 0.015 5E-07 46.6 1.2 18 1-18 31-48 (200)
321 1fnn_A CDC6P, cell division co 93.9 0.2 6.8E-06 43.6 8.5 18 1-18 50-67 (389)
322 3kta_A Chromosome segregation 93.8 0.018 6.1E-07 45.1 1.3 17 1-17 32-48 (182)
323 1lw7_A Transcriptional regulat 93.8 0.014 4.8E-07 51.4 0.8 18 1-18 176-193 (365)
324 2ehv_A Hypothetical protein PH 93.8 0.022 7.4E-07 46.7 1.8 16 1-16 36-51 (251)
325 1qhl_A Protein (cell division 93.8 0.011 3.6E-07 49.0 -0.2 18 1-18 33-50 (227)
326 1knq_A Gluconate kinase; ALFA/ 93.5 0.02 7E-07 44.4 1.2 17 1-17 14-30 (175)
327 2jeo_A Uridine-cytidine kinase 93.5 0.02 6.9E-07 47.3 1.2 18 1-18 31-48 (245)
328 3ozx_A RNAse L inhibitor; ATP 93.3 0.028 9.6E-07 52.3 1.9 19 1-19 31-49 (538)
329 1yqt_A RNAse L inhibitor; ATP- 93.3 0.029 9.8E-07 52.3 1.9 19 1-19 53-71 (538)
330 3kb2_A SPBC2 prophage-derived 93.3 0.029 1E-06 43.0 1.7 17 1-17 7-23 (173)
331 1cke_A CK, MSSA, protein (cyti 93.2 0.025 8.5E-07 45.8 1.2 18 1-18 11-28 (227)
332 3lw7_A Adenylate kinase relate 93.2 0.031 1.1E-06 42.7 1.7 15 1-15 7-21 (179)
333 3b5x_A Lipid A export ATP-bind 93.2 0.031 1.1E-06 52.5 2.0 19 1-19 375-393 (582)
334 1qhx_A CPT, protein (chloramph 93.2 0.032 1.1E-06 43.3 1.8 18 1-18 9-26 (178)
335 3j16_B RLI1P; ribosome recycli 93.1 0.032 1.1E-06 52.8 1.9 19 1-19 109-127 (608)
336 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.035 1.2E-06 42.5 1.8 16 1-16 29-44 (149)
337 1jjv_A Dephospho-COA kinase; P 93.0 0.036 1.2E-06 44.3 1.9 17 1-17 8-24 (206)
338 3b60_A Lipid A export ATP-bind 92.9 0.03 1E-06 52.6 1.4 19 1-19 375-393 (582)
339 3euj_A Chromosome partition pr 92.9 0.029 9.9E-07 51.5 1.2 17 1-17 35-51 (483)
340 2vp4_A Deoxynucleoside kinase; 92.8 0.028 9.7E-07 46.0 1.0 18 1-18 26-43 (230)
341 1nij_A Hypothetical protein YJ 92.8 0.018 6.3E-07 49.8 -0.2 18 1-18 10-27 (318)
342 4e22_A Cytidylate kinase; P-lo 92.8 0.04 1.4E-06 45.8 1.9 16 1-16 33-48 (252)
343 3bk7_A ABC transporter ATP-bin 92.8 0.038 1.3E-06 52.2 1.9 19 1-19 123-141 (607)
344 1sq5_A Pantothenate kinase; P- 92.8 0.026 8.9E-07 48.5 0.7 18 1-18 86-103 (308)
345 4a82_A Cystic fibrosis transme 92.7 0.026 9E-07 52.9 0.7 19 1-19 373-391 (578)
346 3qf4_A ABC transporter, ATP-bi 92.6 0.032 1.1E-06 52.5 1.2 19 1-19 375-393 (587)
347 3h4m_A Proteasome-activating n 92.6 0.3 1E-05 40.8 7.1 18 1-18 57-74 (285)
348 1rz3_A Hypothetical protein rb 92.6 0.029 9.9E-07 44.9 0.7 17 1-17 28-44 (201)
349 3qf4_B Uncharacterized ABC tra 92.6 0.03 1E-06 52.8 0.9 19 1-19 387-405 (598)
350 2qt1_A Nicotinamide riboside k 92.5 0.038 1.3E-06 44.2 1.4 18 1-18 27-44 (207)
351 1ly1_A Polynucleotide kinase; 92.5 0.045 1.5E-06 42.3 1.8 17 1-17 8-24 (181)
352 2yl4_A ATP-binding cassette SU 92.5 0.029 9.9E-07 52.8 0.7 19 1-19 376-394 (595)
353 4b4t_L 26S protease subunit RP 92.4 0.63 2.1E-05 42.1 9.4 17 2-18 222-238 (437)
354 3t61_A Gluconokinase; PSI-biol 92.4 0.046 1.6E-06 43.5 1.7 17 1-17 24-40 (202)
355 3ozx_A RNAse L inhibitor; ATP 92.4 0.047 1.6E-06 50.9 1.9 19 1-19 300-318 (538)
356 3vaa_A Shikimate kinase, SK; s 92.3 0.05 1.7E-06 43.3 1.7 17 1-17 31-47 (199)
357 1ixz_A ATP-dependent metallopr 92.3 0.04 1.4E-06 45.5 1.2 18 1-18 55-72 (254)
358 2w0m_A SSO2452; RECA, SSPF, un 92.2 0.04 1.4E-06 44.3 1.2 17 1-17 29-45 (235)
359 3tqc_A Pantothenate kinase; bi 92.2 0.041 1.4E-06 47.8 1.2 18 1-18 98-115 (321)
360 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.035 1.2E-06 50.7 0.7 18 1-18 144-161 (460)
361 2if2_A Dephospho-COA kinase; a 92.0 0.038 1.3E-06 44.0 0.7 17 1-17 7-23 (204)
362 2qz4_A Paraplegin; AAA+, SPG7, 91.9 0.55 1.9E-05 38.4 7.9 18 1-18 45-62 (262)
363 2x8a_A Nuclear valosin-contain 91.8 0.046 1.6E-06 46.2 1.1 18 1-18 50-67 (274)
364 3h2y_A GTPase family protein; 91.8 0.17 5.7E-06 44.7 4.8 54 61-124 57-110 (368)
365 2v1u_A Cell division control p 91.7 0.32 1.1E-05 42.0 6.6 18 1-18 50-67 (387)
366 3hr8_A Protein RECA; alpha and 91.7 0.85 2.9E-05 40.0 9.2 17 1-17 67-83 (356)
367 3trf_A Shikimate kinase, SK; a 91.6 0.064 2.2E-06 41.8 1.7 17 1-17 11-27 (185)
368 2jaq_A Deoxyguanosine kinase; 91.6 0.066 2.3E-06 42.2 1.7 17 1-17 6-22 (205)
369 1kht_A Adenylate kinase; phosp 91.5 0.08 2.7E-06 41.3 2.1 17 1-17 9-25 (192)
370 3b9p_A CG5977-PA, isoform A; A 91.3 0.99 3.4E-05 37.8 9.0 18 1-18 60-77 (297)
371 1yqt_A RNAse L inhibitor; ATP- 91.3 0.072 2.5E-06 49.5 1.9 20 1-20 318-337 (538)
372 1odf_A YGR205W, hypothetical 3 91.3 0.059 2E-06 46.1 1.2 18 1-18 37-54 (290)
373 1nks_A Adenylate kinase; therm 91.3 0.061 2.1E-06 42.0 1.2 17 1-17 7-23 (194)
374 3bk7_A ABC transporter ATP-bin 91.3 0.073 2.5E-06 50.3 1.9 19 1-19 388-406 (607)
375 3cm0_A Adenylate kinase; ATP-b 91.3 0.075 2.6E-06 41.4 1.7 17 1-17 10-26 (186)
376 1iy2_A ATP-dependent metallopr 91.2 0.061 2.1E-06 45.2 1.2 18 1-18 79-96 (278)
377 2cvh_A DNA repair and recombin 91.2 0.062 2.1E-06 43.0 1.2 17 1-17 26-42 (220)
378 2ze6_A Isopentenyl transferase 91.1 0.078 2.7E-06 44.2 1.8 17 1-17 7-23 (253)
379 2obl_A ESCN; ATPase, hydrolase 91.1 0.052 1.8E-06 47.7 0.7 19 1-19 77-95 (347)
380 3j16_B RLI1P; ribosome recycli 91.1 0.077 2.6E-06 50.1 1.9 20 1-20 384-403 (608)
381 1xjc_A MOBB protein homolog; s 91.0 0.085 2.9E-06 41.4 1.8 18 1-18 10-27 (169)
382 2rhm_A Putative kinase; P-loop 91.0 0.067 2.3E-06 41.9 1.2 17 1-17 11-27 (193)
383 1in4_A RUVB, holliday junction 91.0 0.063 2.2E-06 46.6 1.1 18 1-18 57-74 (334)
384 3qks_A DNA double-strand break 91.0 0.085 2.9E-06 42.4 1.8 16 1-16 29-44 (203)
385 2pez_A Bifunctional 3'-phospho 90.9 0.085 2.9E-06 41.0 1.8 18 1-18 11-28 (179)
386 2dpy_A FLII, flagellum-specifi 90.9 0.056 1.9E-06 49.0 0.7 19 1-19 163-181 (438)
387 1cr0_A DNA primase/helicase; R 90.9 0.056 1.9E-06 45.8 0.7 18 1-18 41-58 (296)
388 4b4t_I 26S protease regulatory 90.8 1.1 3.8E-05 40.4 9.1 17 2-18 223-239 (437)
389 3iij_A Coilin-interacting nucl 90.6 0.093 3.2E-06 40.8 1.7 16 1-16 17-32 (180)
390 1n0w_A DNA repair protein RAD5 90.6 0.077 2.6E-06 43.1 1.2 18 1-18 30-47 (243)
391 1y63_A LMAJ004144AAA protein; 90.5 0.095 3.3E-06 41.1 1.7 18 1-18 16-33 (184)
392 4f4c_A Multidrug resistance pr 90.5 0.052 1.8E-06 55.9 0.1 18 1-18 1111-1128(1321)
393 1gvn_B Zeta; postsegregational 90.4 0.082 2.8E-06 45.0 1.3 17 1-17 39-55 (287)
394 1via_A Shikimate kinase; struc 90.3 0.11 3.6E-06 40.3 1.7 17 1-17 10-26 (175)
395 2z0h_A DTMP kinase, thymidylat 90.2 0.12 4.1E-06 40.5 2.1 17 1-17 6-22 (197)
396 2yvu_A Probable adenylyl-sulfa 90.2 0.11 3.7E-06 40.7 1.8 18 1-18 19-36 (186)
397 2iw3_A Elongation factor 3A; a 90.1 0.084 2.9E-06 52.5 1.3 19 1-19 705-723 (986)
398 1jbk_A CLPB protein; beta barr 90.1 0.13 4.4E-06 39.5 2.2 18 1-18 49-66 (195)
399 4b4t_K 26S protease regulatory 90.1 1.1 3.9E-05 40.2 8.6 17 2-18 213-229 (428)
400 4f4c_A Multidrug resistance pr 90.0 0.087 3E-06 54.2 1.3 18 1-18 450-467 (1321)
401 3g5u_A MCG1178, multidrug resi 90.0 0.094 3.2E-06 53.8 1.6 19 1-19 422-440 (1284)
402 3fb4_A Adenylate kinase; psych 90.0 0.11 3.8E-06 41.6 1.7 16 1-16 6-21 (216)
403 3u61_B DNA polymerase accessor 89.9 2.1 7.1E-05 36.3 9.9 17 2-18 55-71 (324)
404 2v54_A DTMP kinase, thymidylat 89.8 0.12 4.1E-06 40.8 1.8 18 1-18 10-27 (204)
405 3nwj_A ATSK2; P loop, shikimat 89.8 0.094 3.2E-06 43.8 1.2 17 1-17 54-70 (250)
406 1e6c_A Shikimate kinase; phosp 89.6 0.13 4.3E-06 39.5 1.7 17 1-17 8-24 (173)
407 1tev_A UMP-CMP kinase; ploop, 89.4 0.13 4.6E-06 40.0 1.8 17 1-17 9-25 (196)
408 2plr_A DTMP kinase, probable t 89.4 0.15 5.3E-06 40.3 2.1 17 1-17 10-26 (213)
409 3qkt_A DNA double-strand break 89.4 0.13 4.5E-06 44.7 1.8 16 1-16 29-44 (339)
410 1svm_A Large T antigen; AAA+ f 89.4 0.1 3.6E-06 46.3 1.2 18 1-18 175-192 (377)
411 3dl0_A Adenylate kinase; phosp 89.3 0.13 4.6E-06 41.1 1.7 17 1-17 6-22 (216)
412 1vht_A Dephospho-COA kinase; s 89.3 0.14 4.7E-06 41.2 1.7 17 1-17 10-26 (218)
413 2pt5_A Shikimate kinase, SK; a 89.2 0.14 4.8E-06 39.1 1.7 17 1-17 6-22 (168)
414 1gtv_A TMK, thymidylate kinase 89.2 0.049 1.7E-06 43.5 -1.0 18 1-18 6-23 (214)
415 3ux8_A Excinuclease ABC, A sub 89.2 0.088 3E-06 50.2 0.6 16 1-16 354-369 (670)
416 2pbr_A DTMP kinase, thymidylat 89.2 0.16 5.5E-06 39.6 2.1 17 1-17 6-22 (195)
417 2wwf_A Thymidilate kinase, put 89.1 0.12 4E-06 41.1 1.2 17 1-17 16-32 (212)
418 2c95_A Adenylate kinase 1; tra 89.0 0.12 4.2E-06 40.4 1.3 17 1-17 15-31 (196)
419 1lv7_A FTSH; alpha/beta domain 88.9 0.12 4.2E-06 42.6 1.2 18 1-18 51-68 (257)
420 1uf9_A TT1252 protein; P-loop, 88.9 0.13 4.3E-06 40.6 1.2 18 1-18 14-31 (203)
421 2iyv_A Shikimate kinase, SK; t 88.8 0.16 5.3E-06 39.6 1.7 17 1-17 8-24 (184)
422 1xwi_A SKD1 protein; VPS4B, AA 88.8 4 0.00014 34.8 10.9 18 1-18 51-68 (322)
423 1e69_A Chromosome segregation 88.8 0.1 3.4E-06 45.1 0.6 16 1-16 30-45 (322)
424 3ec1_A YQEH GTPase; atnos1, at 88.7 0.18 6.3E-06 44.4 2.3 43 74-124 70-112 (369)
425 1w1w_A Structural maintenance 88.7 0.13 4.3E-06 46.3 1.2 17 1-17 32-48 (430)
426 4b4t_H 26S protease regulatory 88.6 2.3 8E-05 38.6 9.5 18 1-18 249-266 (467)
427 4aby_A DNA repair protein RECN 88.5 0.037 1.3E-06 49.3 -2.4 16 1-16 66-81 (415)
428 1ukz_A Uridylate kinase; trans 88.5 0.17 5.8E-06 40.0 1.8 17 1-17 21-37 (203)
429 2bwj_A Adenylate kinase 5; pho 88.5 0.14 4.8E-06 40.2 1.3 17 1-17 18-34 (199)
430 1zd8_A GTP:AMP phosphotransfer 88.3 0.14 4.9E-06 41.4 1.3 16 1-16 13-28 (227)
431 1zak_A Adenylate kinase; ATP:A 88.3 0.14 4.9E-06 41.3 1.2 17 1-17 11-27 (222)
432 1m7g_A Adenylylsulfate kinase; 88.3 0.17 6E-06 40.5 1.7 18 1-18 31-48 (211)
433 2cdn_A Adenylate kinase; phosp 88.3 0.18 6.1E-06 39.9 1.8 17 1-17 26-42 (201)
434 1nn5_A Similar to deoxythymidy 88.2 0.15 5E-06 40.6 1.2 17 1-17 15-31 (215)
435 2iw3_A Elongation factor 3A; a 88.2 0.14 4.7E-06 51.0 1.2 19 1-19 467-485 (986)
436 1qf9_A UMP/CMP kinase, protein 88.1 0.15 5.1E-06 39.7 1.2 17 1-17 12-28 (194)
437 2w58_A DNAI, primosome compone 88.1 0.21 7.3E-06 39.4 2.1 18 1-18 60-77 (202)
438 4ag6_A VIRB4 ATPase, type IV s 88.1 0.18 6.1E-06 44.6 1.8 18 1-18 41-58 (392)
439 4b4t_J 26S protease regulatory 88.0 2.6 9E-05 37.5 9.4 17 2-18 189-205 (405)
440 3a4m_A L-seryl-tRNA(SEC) kinas 88.0 0.19 6.4E-06 41.9 1.8 17 1-17 10-26 (260)
441 3r20_A Cytidylate kinase; stru 88.0 0.19 6.4E-06 41.5 1.8 17 1-17 15-31 (233)
442 2qmh_A HPR kinase/phosphorylas 87.9 0.18 6.2E-06 40.8 1.6 19 1-19 40-58 (205)
443 1aky_A Adenylate kinase; ATP:A 87.9 0.19 6.6E-06 40.4 1.8 17 1-17 10-26 (220)
444 2o5v_A DNA replication and rep 87.9 0.15 5.3E-06 44.8 1.2 17 1-17 32-48 (359)
445 1ko7_A HPR kinase/phosphatase; 87.9 0.15 5.1E-06 44.1 1.1 19 1-19 150-168 (314)
446 2yv5_A YJEQ protein; hydrolase 87.8 0.99 3.4E-05 38.4 6.3 45 74-123 78-123 (302)
447 2grj_A Dephospho-COA kinase; T 87.8 0.2 6.7E-06 40.0 1.7 17 1-17 18-34 (192)
448 2vli_A Antibiotic resistance p 87.8 0.12 4.2E-06 40.0 0.5 17 1-17 11-27 (183)
449 1nlf_A Regulatory protein REPA 87.7 0.13 4.5E-06 43.1 0.7 17 1-17 36-52 (279)
450 2xb4_A Adenylate kinase; ATP-b 87.6 0.2 6.9E-06 40.6 1.7 17 1-17 6-22 (223)
451 1zuh_A Shikimate kinase; alpha 87.6 0.21 7.1E-06 38.3 1.7 17 1-17 13-29 (168)
452 3cr8_A Sulfate adenylyltranfer 87.5 0.091 3.1E-06 49.0 -0.5 18 1-18 375-392 (552)
453 3bos_A Putative DNA replicatio 87.5 0.24 8.3E-06 39.7 2.1 18 1-18 58-75 (242)
454 3g5u_A MCG1178, multidrug resi 87.5 0.19 6.6E-06 51.5 1.8 19 1-19 1065-1083(1284)
455 2p5t_B PEZT; postsegregational 87.3 0.12 4.3E-06 42.8 0.3 17 1-17 38-54 (253)
456 2p65_A Hypothetical protein PF 87.2 0.18 6.2E-06 38.6 1.2 18 1-18 49-66 (187)
457 1e4v_A Adenylate kinase; trans 87.1 0.19 6.3E-06 40.4 1.2 17 1-17 6-22 (214)
458 3auy_A DNA double-strand break 87.1 0.18 6.2E-06 44.3 1.3 16 1-16 31-46 (371)
459 1jr3_A DNA polymerase III subu 87.0 0.33 1.1E-05 42.0 2.9 17 1-17 44-60 (373)
460 3a8t_A Adenylate isopentenyltr 86.8 0.26 8.8E-06 43.1 2.0 51 1-53 46-105 (339)
461 3vfd_A Spastin; ATPase, microt 86.8 1.5 5.2E-05 38.4 7.1 18 1-18 154-171 (389)
462 1sxj_E Activator 1 40 kDa subu 86.8 0.19 6.7E-06 43.3 1.2 18 1-18 42-59 (354)
463 1ltq_A Polynucleotide kinase; 86.7 0.24 8.3E-06 41.8 1.8 17 1-17 8-24 (301)
464 2ius_A DNA translocase FTSK; n 86.6 0.27 9.4E-06 45.4 2.2 18 1-18 173-190 (512)
465 2zan_A Vacuolar protein sortin 86.6 2.5 8.7E-05 37.9 8.6 18 1-18 173-190 (444)
466 3ake_A Cytidylate kinase; CMP 86.6 0.29 9.9E-06 38.6 2.1 17 1-17 8-24 (208)
467 3tlx_A Adenylate kinase 2; str 86.5 0.26 9E-06 40.5 1.8 17 1-17 35-51 (243)
468 2chg_A Replication factor C sm 86.2 0.32 1.1E-05 38.2 2.1 18 1-18 44-61 (226)
469 3exa_A TRNA delta(2)-isopenten 86.1 0.28 9.4E-06 42.5 1.8 54 1-56 9-71 (322)
470 1ak2_A Adenylate kinase isoenz 86.0 0.28 9.7E-06 39.9 1.8 17 1-17 22-38 (233)
471 1njg_A DNA polymerase III subu 86.0 0.32 1.1E-05 38.6 2.1 18 1-18 51-68 (250)
472 4eaq_A DTMP kinase, thymidylat 85.9 0.33 1.1E-05 39.7 2.1 18 1-18 32-49 (229)
473 3crm_A TRNA delta(2)-isopenten 85.7 0.29 1E-05 42.4 1.8 18 1-18 11-28 (323)
474 3thx_A DNA mismatch repair pro 85.6 5.6 0.00019 39.4 11.1 15 1-15 668-682 (934)
475 1t9h_A YLOQ, probable GTPase E 85.4 2 6.8E-05 36.8 6.9 47 74-124 85-131 (307)
476 3n70_A Transport activator; si 85.4 0.37 1.3E-05 36.1 2.0 18 1-18 30-47 (145)
477 1uj2_A Uridine-cytidine kinase 85.4 0.35 1.2E-05 39.9 2.1 17 1-17 28-44 (252)
478 3be4_A Adenylate kinase; malar 85.4 0.26 9E-06 39.6 1.3 17 1-17 11-27 (217)
479 3foz_A TRNA delta(2)-isopenten 85.4 0.32 1.1E-05 42.0 1.8 18 1-18 16-33 (316)
480 1pzn_A RAD51, DNA repair and r 85.3 0.21 7.1E-06 43.7 0.7 18 1-18 137-154 (349)
481 2r62_A Cell division protease 85.3 0.34 1.2E-05 40.0 2.0 18 1-18 50-67 (268)
482 3d3q_A TRNA delta(2)-isopenten 85.3 0.31 1.1E-05 42.5 1.8 18 1-18 13-30 (340)
483 1tf7_A KAIC; homohexamer, hexa 84.8 0.23 7.8E-06 45.9 0.7 15 1-15 45-59 (525)
484 2dr3_A UPF0273 protein PH0284; 84.7 0.3 1E-05 39.6 1.3 16 1-16 29-44 (247)
485 1l8q_A Chromosomal replication 84.7 0.32 1.1E-05 41.6 1.5 18 1-18 43-60 (324)
486 2f6r_A COA synthase, bifunctio 84.4 0.3 1E-05 41.2 1.2 16 1-16 81-96 (281)
487 1puj_A YLQF, conserved hypothe 84.4 1.8 6.3E-05 36.4 6.2 43 74-124 22-64 (282)
488 2qby_A CDC6 homolog 1, cell di 84.1 0.3 1E-05 42.2 1.1 18 1-18 51-68 (386)
489 1sxj_C Activator 1 40 kDa subu 84.1 0.34 1.2E-05 41.7 1.5 18 1-18 52-69 (340)
490 3cf0_A Transitional endoplasmi 83.9 0.36 1.2E-05 41.0 1.5 18 1-18 55-72 (301)
491 3l82_B F-box only protein 4; T 83.6 1.9 6.4E-05 35.2 5.5 75 44-122 97-175 (227)
492 1q3t_A Cytidylate kinase; nucl 83.5 0.42 1.4E-05 38.9 1.7 17 1-17 22-38 (236)
493 2qgz_A Helicase loader, putati 83.4 0.48 1.7E-05 40.5 2.1 18 1-18 158-175 (308)
494 1tue_A Replication protein E1; 83.3 0.36 1.2E-05 39.2 1.2 16 2-17 65-80 (212)
495 3zvl_A Bifunctional polynucleo 83.2 0.43 1.5E-05 42.7 1.8 18 1-18 264-281 (416)
496 3co5_A Putative two-component 82.9 0.31 1.1E-05 36.5 0.6 18 1-18 33-50 (143)
497 4fcw_A Chaperone protein CLPB; 82.8 0.37 1.3E-05 40.6 1.1 18 1-18 53-70 (311)
498 3t15_A Ribulose bisphosphate c 82.7 0.45 1.5E-05 40.3 1.6 17 2-18 43-59 (293)
499 1a7j_A Phosphoribulokinase; tr 82.7 0.22 7.6E-06 42.3 -0.3 16 2-17 12-27 (290)
500 3tqf_A HPR(Ser) kinase; transf 82.6 0.44 1.5E-05 37.7 1.4 18 1-18 22-39 (181)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=2.2e-33 Score=241.29 Aligned_cols=215 Identities=71% Similarity=1.113 Sum_probs=183.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|+|||||+|+|+|...+.++.+.++|..+......+++..++||||||+.+.....+.+.+.+.+++..+++|++|
T Consensus 42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il 121 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121 (262)
T ss_dssp EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEE
Confidence 59999999999999999987777777778888888888899999999999999998878888888898888778999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA 160 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (256)
||+++|..+++..+..+++.+.+.++.+.++++++|+||+|+.+.++..+++|+++....++++++++.+......+...
T Consensus 122 ~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 201 (262)
T 3def_A 122 YVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA 201 (262)
T ss_dssp EEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCcccccccccc
Confidence 99999987788888999999999999988899999999999977777899999987777889999877654432223345
Q ss_pred chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhcc
Q 025189 161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215 (256)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~ 215 (256)
+|+..++|++.|..|..++++||++.+|++.|++++++.+.+.++++++|+++.+
T Consensus 202 ~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T 3def_A 202 IAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256 (262)
T ss_dssp CEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSCCEEC------
T ss_pred CCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCCceeccHHHhh
Confidence 8888899999999999999999999999999999999999999999999998765
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=1.3e-32 Score=237.26 Aligned_cols=221 Identities=67% Similarity=1.064 Sum_probs=191.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|+|||||+|+|++...+.++...++|..+.......++..++||||||+.+.......+.+.+.+++...++|++|
T Consensus 45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il 124 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 124 (270)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEE
Confidence 59999999999999999987677777777777777777888999999999999988777777777777776667899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA 160 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (256)
||++++..+++..+..+++.+.+.+|.+.|.|+++|+||+|+.++++.++++|.++....+++.+++..++.+. .+...
T Consensus 125 ~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 203 (270)
T 1h65_A 125 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASD 203 (270)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcc
Confidence 99999887788888899999999999888899999999999977777789999988788888888776666442 33456
Q ss_pred chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhccCCCCCCC
Q 025189 161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDK 222 (256)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (256)
+|++++++.+.|+++..+++++|....|.+.|++.+.+.+.++.+.++.|+++++++++..+
T Consensus 204 ~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~~~~~~ 265 (270)
T 1h65_A 204 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH 265 (270)
T ss_dssp CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHHHHCC-
T ss_pred CCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999998876544
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=164.61 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=102.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (256)
+|.+|||||||+|+|+|......+.. .++|..+......+++..+.||||||+.+......+..+.+.+++ ..+++|
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPH 114 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCS
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 69999999999999999876433221 256777777888899999999999999988766666666666654 346899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcc
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 150 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 150 (256)
++|+|++++ +++..+..+++.+.+.++...++|+++|+||+|+. +....++++....+.++++++.|+.
T Consensus 115 ~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 115 ALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp EEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHHSS
T ss_pred EEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHcCC
Confidence 999998876 67778889999999988877778999999999985 3345677877666788999987753
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=7.1e-21 Score=161.89 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=107.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhh--hcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFL--LNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l--~~~~~ 76 (256)
+|.+|||||||+|+|+|...+..+.. .++|..+......+++..++||||||+.+..... ++....+.+++ +.+++
T Consensus 27 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGP 106 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCC
T ss_pred ECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999987654432 3477788888888999999999999998765433 33444454443 34799
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccc-ccEEEEEecccCCCCCCCchhHhhhhc-cHHHHHHHHHhc
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW-RKSLLVLTHAQLCPPDGLNYDVYCSKR-SDALLKTIRLGA 149 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~-~~~ivv~Tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 149 (256)
|++|+|++++ +++..+..+++.+.+.||.+.+ .+++++.||.|+. +.+.++++... .+.++++++.|+
T Consensus 107 d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 107 HALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp SEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred CEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHHHHcC
Confidence 9999998776 6889999999999999998664 4677777888974 34677787653 367899998875
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=1.7e-17 Score=141.42 Aligned_cols=144 Identities=22% Similarity=0.218 Sum_probs=109.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (256)
+|.+|||||||+|+|+|...+..+..+. +|..+......+++..+.||||||+.+.......+.+.+.+++ ..+++|
T Consensus 28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d 107 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107 (260)
T ss_dssp EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 6999999999999999988665554333 6777777777889999999999999987666555554554433 237899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe-cccCCCCCCCchhHhhhhc-cHHHHHHHHHhc
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT-HAQLCPPDGLNYDVYCSKR-SDALLKTIRLGA 149 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 149 (256)
++|+|++++ +++..+..+++.+.+.++.....+.++|+| |+|+.. ....+++... ...++++++.+.
T Consensus 108 ~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 108 VLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp EEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHHTT
T ss_pred EEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHHhC
Confidence 999998776 588888889999999998876788999998 999852 2455555432 355666776654
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.70 E-value=2.6e-16 Score=137.55 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|...+.++..+++|..........++.++.+|||||+.++...-.+ .......++ ..+|++
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~i 90 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAV 90 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEE
Confidence 69999999999999999988777777777776666556678899999999999875432222 222233333 689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|+++++ +++..+..+++.+.+..+ + .|+++|+||+|+.
T Consensus 91 l~VvD~~~-~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 91 VWVVDLRH-PPTPEDELVARALKPLVG-K--VPILLVGNKLDAA 130 (301)
T ss_dssp EEEEETTS-CCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGC
T ss_pred EEEEECCC-CCChHHHHHHHHHHhhcC-C--CCEEEEEECcccC
Confidence 99988875 477777777777776532 2 7999999999985
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.67 E-value=1.1e-15 Score=119.56 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=79.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++......+..+++|..........++..+.+|||||..+..............++ ..+|+++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i 84 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVL 84 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEE
Confidence 59999999999999999875445555666666777777788999999999999875433333333333333 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++. +++..+..+.+.+.+. ..|+++|+||+|+.
T Consensus 85 ~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 85 FAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP 121 (161)
T ss_dssp EEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred EEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 9988875 4667666666666652 27899999999984
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=4e-16 Score=129.23 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=86.9
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~ 74 (256)
+|.+|||||||+|+|++.. .+.++...++|......... .++..+.+|||||+.+..... +.+...+..++ ...
T Consensus 35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP 114 (223)
T ss_dssp EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence 5999999999999999987 45666666777766655554 567899999999998764332 22333444444 235
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+|+++||++... .++..+..+++.+.+. ..|+++|+||+|+.
T Consensus 115 ~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 115 QLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL 157 (223)
T ss_dssp TEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred CcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence 6899999988765 5778888888877662 27999999999985
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.66 E-value=5.6e-16 Score=135.74 Aligned_cols=115 Identities=21% Similarity=0.292 Sum_probs=88.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|+|+|...+.++..+++|..........+ +.++.+|||||+.+.... .+........++ ..+
T Consensus 16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~a 93 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEA 93 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHC
T ss_pred ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcC
Confidence 59999999999999999988777887888888777777787 999999999999876521 122323333333 579
Q ss_pred cEEEEEEeCCCCCCCHHHHHH-HHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~-~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++|+|++++. ..+..+..+ ++.+... ..|+++|+||+|+.
T Consensus 94 D~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 94 DVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp SEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred CEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 99999988875 456666666 6666552 27999999999985
No 10
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=1.1e-15 Score=122.15 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|.+...+.++..+++|.........+++..+.+|||||+.+.....+. ........+ ..+|++
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~~ad~~ 87 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRV 87 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH--HTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH--HhCCEE
Confidence 69999999999999999875556666677776666677788989999999999764321111 111111111 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+++++. .+..+..++..+.+....+ .|+++|+||+|+.
T Consensus 88 i~v~D~~~~-~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 88 LFMVDGTTT-DAVDPAEIWPEFIARLPAK--LPITVVRNKADIT 128 (172)
T ss_dssp EEEEETTTC-CCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence 999888753 2333556777776665433 7899999999983
No 11
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=1.6e-15 Score=130.48 Aligned_cols=117 Identities=21% Similarity=0.306 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-------CCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcH---HHH----
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNY---QAL---- 64 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~---~~~---- 64 (256)
+|.+|+|||||+|+|++.+.+..+. .++.+..........+|. .++||||||+++...... ...
T Consensus 14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~ 93 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 93 (274)
T ss_dssp EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence 6999999999999999987754432 122223333344445554 889999999987532211 111
Q ss_pred HHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 65 ELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 65 ~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+....++ ...++|++||++......+...+..+++.+.. ..|+++|+||+|+.
T Consensus 94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 0112222 23468899999655544588888888887766 28999999999984
No 12
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=3.1e-15 Score=137.10 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC--cCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|+|...+.++..+++|.........++|..+.+|||||+.... .....+......++ .++|+
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~ 84 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL 84 (439)
T ss_dssp ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCE
Confidence 699999999999999999877778888888888888888999999999999997532 12233333333333 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|++... .++..+..+.+.+.+.- +|+++|+||+|+.
T Consensus 85 il~V~D~~~-~~~~~d~~i~~~l~~~~-----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 85 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL 123 (439)
T ss_dssp EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence 999987764 57777777777776542 7999999999973
No 13
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.59 E-value=3.4e-14 Score=118.50 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ++..+.+|...........+..+.+|||||+.+...... .....+..+. ...|+
T Consensus 35 vG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~ 111 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA--HINGV 111 (228)
T ss_dssp ECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH--TSSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh--ccccE
Confidence 699999999999999998753 455556666666666677889999999999976432111 1111222222 57899
Q ss_pred EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.. +. ..+..++..+...+. ..|+++|+||+|+.+
T Consensus 112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 112 ILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCN 156 (228)
T ss_dssp EEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC
T ss_pred EEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCC
Confidence 99998887632 33 233456666655432 279999999999864
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.59 E-value=9.9e-15 Score=118.02 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcCC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~~ 75 (256)
+|.+|||||||+|+|++.. ...++...++|.....+. .+ ..+.+|||||+++..... ..+...+..++ ....
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE 105 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence 5999999999999999986 333444444555444332 23 368999999988765432 22333333343 2246
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|++++. +.+..+..+++.+.+. ..|+++|+||+|+.
T Consensus 106 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 106 LKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKI 147 (195)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 699999988775 4667777777776652 27999999999985
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=7.8e-15 Score=125.24 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=82.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-----CcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-----VNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-----~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|||||||+|+|+|.. +.++..+++|.........+++..+.+|||||+.+... ..++. ..+.++....
T Consensus 7 vG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~--i~~~~~~~~~ 83 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQ--IAAQSVIDLE 83 (256)
T ss_dssp EESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHH--HHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHH--HHHHHHhhCC
Confidence 5999999999999999986 46777888888888888888999999999999987643 11111 2233444478
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|++.+. .+....+...+.+. ..|+++|+||+|+.
T Consensus 84 ~d~vi~VvDas~---~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 84 YDCIINVIDACH---LERHLYLTSQLFEL-----GKPVVVALNMMDIA 123 (256)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHTTS-----CSCEEEEEECHHHH
T ss_pred CCEEEEEeeCCC---chhHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 999999977663 13333444444433 27999999999974
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=116.05 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..........++ ..+|+
T Consensus 22 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 91 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG 91 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHH---------TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHH---------hhCCE
Confidence 699999999999999987642 22223344444445556666 5789999999754432222222 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 126 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~ 126 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.+.+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence 999988876322233345666666665444 7899999999986433
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=115.44 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 15 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 84 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY---------RGTHG 84 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGG---------TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHh---------ccCCE
Confidence 699999999999999998653 22233344444445556677 6789999999765433322221 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+.+... ..|+++|+||+|+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCc
Confidence 9999888763222222345555655443 27899999999975
No 18
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.56 E-value=2.2e-14 Score=123.58 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=83.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-----CcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-----VNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-----~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|||||||+|+|+|.. +.++..+++|.........+.+..+.+|||||+.+... ...+. ..+.++....
T Consensus 9 vG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~--i~~~~~~~~~ 85 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IACHYILSGD 85 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH--HHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH--HHHHHHhhcC
Confidence 5999999999999999987 47788888888887777888889999999999988652 11111 1223334478
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++++|++.+. .+....+...+.+.- .|+++|+||+|+.
T Consensus 86 ~d~ii~VvD~~~---~~~~~~~~~~l~~~~-----~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 86 ADLLINVVDASN---LERNLYLTLQLLELG-----IPCIVALNMLDIA 125 (274)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHHHT-----CCEEEEEECHHHH
T ss_pred CCEEEEEecCCC---hHHHHHHHHHHHhcC-----CCEEEEEECccch
Confidence 999999976653 234445556665542 7999999999974
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.7e-14 Score=114.98 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.........++.+..........++. .+.+|||||..+.. .....++ ..+|+
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~~d~ 86 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY--RDAHA 86 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG--GGCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc--cCCCE
Confidence 5999999999999999876532222233333333333455654 78999999965422 1122222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.+.
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc
Confidence 999988875322222345566666654433 799999999998643
No 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.55 E-value=6.5e-14 Score=112.80 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~~~ 76 (256)
+|.+|||||||+|+|++......+...++|....... .+..+.+|||||+....... ..+......++ ....+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSL 105 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTE
T ss_pred ECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCc
Confidence 5999999999999999987555555555555443322 23467899999987654322 12222333333 23578
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|++.+. .....+..+++.+... ..|+++|+||+|+.
T Consensus 106 ~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 106 QMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred eEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 99999987764 4667777777777665 27999999999985
No 21
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=6.6e-15 Score=134.81 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=79.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|+|.....++..+++|.........++|..+.+|||||+.+..... +.+ ..++.......+|
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad 259 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSE 259 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHH-HHHHHHHHHHHCS
T ss_pred EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHH-HHHHHHHHHHhCC
Confidence 699999999999999999876677777888877666778899999999999997643211 111 1111100114689
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 126 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~ 126 (256)
++|+|++++. ..+..+..++..+.+. .+++++|+||+|+.+.+
T Consensus 260 ~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 260 VVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp EEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred EEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence 9999988875 5677777777766543 27999999999986433
No 22
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.55 E-value=1.8e-14 Score=113.43 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .+............+. +..+.+|||||..+.......+. ..+|+
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~~~ 81 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDSFDPNI-NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYY---------RGSAA 81 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHH---------TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhC---------cCCCE
Confidence 599999999999999987632111 1111111222233344 36789999999854332222221 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+....... .++++|+||+|+.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccc
Confidence 999988875322223345666666653333 6899999999985
No 23
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.54 E-value=1.3e-14 Score=115.46 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=74.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++.... .+..++.+.........+++..+.+|||||..+...... .+ ...+|+++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~~i 83 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------RG--AQVTDIVI 83 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------SS--CCCCCEEE
T ss_pred ECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------HH--HhhCCEEE
Confidence 599999999999999997643 333334444444455677889999999999876543221 11 15799999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++ .........++.+.. .+ .|+++|+||+|+.
T Consensus 84 ~v~d~~~-~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 84 LVVAADD-GVMPQTVEAINHAKA---AN--VPIIVAINKMDKP 120 (178)
T ss_dssp EEEETTC-CCCHHHHHHHHHHGG---GS--CCEEEEEETTTSS
T ss_pred EEEECCC-CCcHHHHHHHHHHHh---CC--CCEEEEEECccCC
Confidence 9988775 344555555544432 22 7899999999985
No 24
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=6.6e-15 Score=135.55 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=75.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|...+.++..+++|.........+.+..+.+|||||+...... .+++......++ .++|++
T Consensus 29 vG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i 106 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI 106 (456)
T ss_dssp ECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH--HHCSEE
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEE
Confidence 69999999999999999887777777888888888888888999999999998753322 233333333333 579999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 107 l~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 107 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT 144 (456)
T ss_dssp EEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred EEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence 99977554 5788888888777652 38999999999975
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=1.4e-14 Score=133.29 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=84.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|+|||||+|+|++...+.++..+++|.........+++..+.+|||||+.+.... .+.+. .++..-....+|
T Consensus 201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~-~~~~~~~~~~ad 279 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS-VLRALKAIDRSE 279 (456)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHH-HHHHHHHHHHCS
T ss_pred ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHH-HHHHHHHHhhCC
Confidence 59999999999999999887777887888887766677789999999999998764321 11111 111100114789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
++|+|++... .+++.+..++..+.+. + +++++|+||+|+.+.+.
T Consensus 280 ~~llviD~~~-~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 280 VVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp EEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCS
T ss_pred EEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCch
Confidence 9999987765 5788888888877763 2 79999999999864433
No 26
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=5e-14 Score=115.44 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~ 95 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY---------RGAMG 95 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHH---------TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHh---------ccCCE
Confidence 599999999999999987642 22223334444445556677 5789999999765443333222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 138 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 999988875322222345666666655433 7899999999983
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2.4e-14 Score=116.03 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++..... .....+.+...........+..+.+|||||..+.......++ ..+|++
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~i 99 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYY---------RGSAAA 99 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHH---------TTCSEE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhh---------ccCCEE
Confidence 5999999999999999876321 121122222222222233456889999999765432222221 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+++++....+....++..+.+....+ .|+++|+||+|+.
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccc
Confidence 99988875322233345666666654333 7999999999985
No 28
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.53 E-value=1e-13 Score=118.42 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=81.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|... .++.++++|..........++..+.+|||||..+..... ++. ..+.++....+|++
T Consensus 11 vG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~--v~~~~~~~~~~d~i 87 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEK--IARDYLLKGDADLV 87 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHH--HHHHHHHHSCCSEE
T ss_pred ECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHH--HHHHHHhhcCCCEE
Confidence 59999999999999999875 467777888777777777888999999999998764322 211 11233333689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.+. + +....+...+.+. -.|+++|+||+|+.
T Consensus 88 i~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 88 ILVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEA 123 (258)
T ss_dssp EEEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred EEEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCC
Confidence 99977663 3 3333455555443 27999999999974
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.53 E-value=2.6e-14 Score=113.46 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..+.......+ + ..+|+
T Consensus 20 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~------~~~d~ 89 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY---I------RDSTV 89 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHH---H------HTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHH---h------cCCCE
Confidence 599999999999999976542 22222333334444455665 478999999975433222222 2 47999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+....+.+ .|+++|+||+|+.+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccc
Confidence 999988875322223345556665554433 78999999999853
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.53 E-value=3.9e-14 Score=111.51 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~---------~~~d~ 78 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY---------RGAMG 78 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHH---------TTEEE
T ss_pred ECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHh---------ccCCE
Confidence 599999999999999987642 22222333333334445554 4789999999765543333322 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+....+ .|+++|+||+|+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 121 (170)
T 1g16_A 79 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence 999988875322223345666666655433 7999999999983
No 31
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=8.1e-15 Score=134.21 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|...+.++..+++|.........+++..+.+|||||+...... ...+......++ .++|++
T Consensus 9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i 86 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI 86 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--HHCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence 69999999999999999887777778888888888888889999999999999743211 122222222222 579999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
|+|++... ..+..+..+.+.+.+. .+|+++|+||+|+.+
T Consensus 87 l~vvD~~~-~~~~~d~~~~~~l~~~-----~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 87 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNTE 125 (436)
T ss_dssp EEEEETTT-CSCHHHHHHHHHHTTC-----CSCEEEEEECCCC--
T ss_pred EEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCcc
Confidence 99987765 4677777666655432 279999999999853
No 32
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.53 E-value=7.1e-14 Score=110.60 Aligned_cols=113 Identities=18% Similarity=0.280 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|+|... .++..+++|.........+++..+.+|||||..+...... .......++...++|+++
T Consensus 9 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i 86 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV 86 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhcCCCCEEE
Confidence 69999999999999999753 3454555555555555667889999999999986532211 001112222224789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++..+ + +....++..+.+. ..|+++|+||+|+.
T Consensus 87 ~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 87 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp EEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred EEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 9977663 2 2333455555442 27999999999973
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.53 E-value=6.1e-14 Score=111.76 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .++.+.........++ +..+.+|||||..........+ + ..+|+
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~ 87 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-------Y--RGAAA 87 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHH-------H--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHH-------h--ccCCE
Confidence 599999999999999987643221 1222222222333444 4578999999975433222222 1 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.+.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence 999988875322233455666666654333 789999999998543
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.53 E-value=6.1e-14 Score=110.17 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...++.+.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~ 80 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY---------RGAQA 80 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHH---------TTCCE
T ss_pred ECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHh---------cCCCE
Confidence 5999999999999999875421 1112222333334444554 4789999999765443333322 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+..... ..|+++|+||+|+.+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCc
Confidence 9999888753212223345555555442 279999999999853
No 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.53 E-value=6.3e-14 Score=111.91 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... ...+.+++..........++ ..+.+|||||..+.......+. ..+|+
T Consensus 12 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~~~ 80 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS---------IDING 80 (181)
T ss_dssp EESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGT---------TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHH---------hcCCE
Confidence 59999999999999996652 33344444444444555666 4668999999876543322221 57999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+.-..++..+.+.... ...|+++|+||+|+...
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence 99998887532222333455555554432 12789999999998533
No 36
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.53 E-value=6.2e-14 Score=114.62 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||..+.......+ + ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~--~~~d~ 83 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY-------Y--RGSHG 83 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG-------G--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHh-------c--cCCCE
Confidence 599999999999999987642 22222333333334455565 478999999987654332222 1 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+....... .++++|+||+|+.+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 999988875322223334556666554333 78999999999864
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=7.2e-14 Score=109.81 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++..... ...+..+.........+++ ..+.+|||||..+..... ..++ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~--~~~d~ 78 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA-------PXYY--RNAQA 78 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh-------hhhh--ccCcE
Confidence 5999999999999999876421 1112222222223334444 478999999975432211 1122 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+.+..+.+ .|+++|+||+|+.+
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 79 ALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccc
Confidence 999988875322223344556666554433 78999999999853
No 38
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.52 E-value=2.3e-14 Score=112.96 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....++.+.........+++ ..+.+|||||..+... ....++ ..+|+
T Consensus 12 ~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~~d~ 81 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYY--RDSNG 81 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSS--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHh--ccCCE
Confidence 599999999999999987532 12222223333333444444 4678999999654321 111112 58899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....+++.+.+..+.+ .|+++|+||+|+.+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 125 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEK 125 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECccccc
Confidence 999988875322223345556666654443 78999999999853
No 39
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.52 E-value=3.3e-14 Score=111.76 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++........ +..+.........++ +..+.+|||||..+...... .++ ..+|+
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~--~~~d~ 81 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP-------MYY--RGAQA 81 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHH-------HHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhH-------Hhc--cCCCE
Confidence 5999999999999999865422211 111111112223333 56789999999754322111 112 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+..... .++++|+||+|+.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLA 124 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCc
Confidence 999988875321123344556665554433 6899999999985
No 40
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.52 E-value=2.3e-14 Score=132.48 Aligned_cols=113 Identities=23% Similarity=0.195 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~v 79 (256)
+|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++....+.. .++... ....+|++
T Consensus 239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v 316 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMKMAEADLI 316 (476)
T ss_dssp ECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CCCSSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhhcccCCEE
Confidence 699999999999999999877788888888888777788899999999999997643211111 011111 22689999
Q ss_pred EEEEeCCCCCCCH----HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDD----LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~----~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++.+. ..+. .+..+++. +. ..|+++|+||+|+.
T Consensus 317 l~VvD~s~-~~s~~~~~~~~~~l~~----l~---~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 317 LYLLDLGT-ERLDDELTEIRELKAA----HP---AAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEETTT-CSSGGGHHHHHHHHHH----CT---TSEEEEEEECTTSC
T ss_pred EEEEECCC-CcchhhhHHHHHHHHh----cC---CCCEEEEEECcCCC
Confidence 99988876 3333 33333332 22 27999999999985
No 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.52 E-value=1.1e-13 Score=111.83 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--------------------------------------
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-------------------------------------- 42 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-------------------------------------- 42 (256)
+|.+|||||||+|+|++.... ....++.+.........+++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC 91 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTC
T ss_pred ECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccc
Confidence 599999999999999997642 11112222222223333333
Q ss_pred -eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 43 -FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 43 -~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
..+.+|||||..+.......+ + ..+|++++|+++++.........++..+.+..+ .|+++|+||+|
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~D 158 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLY-------Y--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKID 158 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHH-------H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECTT
T ss_pred eeEEEEEECCCcHHHHHHHHHH-------h--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECCC
Confidence 788999999976543322221 2 589999999887753211222345555555433 79999999999
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=112.11 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=64.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..........+.+ .......+++. .+.+|||||....... . ....++ ...|+
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~--~~~~~~--~~~~~ 80 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDKS---W--SQESCL--QGGSA 80 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------C---H--HHHHTT--TSCSE
T ss_pred ECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccchh---h--hHHhhc--ccCCE
Confidence 699999999999999998754433332222 22333455554 6789999998642111 1 111122 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+....++..+.+... ....|+++|+||+|+.+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 9999888863211222345555554321 112789999999998543
No 43
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.52 E-value=1.5e-14 Score=126.29 Aligned_cols=113 Identities=15% Similarity=0.264 Sum_probs=81.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC-CCCcCcHHHHHHHHHhh--hcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVNYQALELIKGFL--LNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~-~~~~~~~~~~~~i~~~l--~~~~~d 77 (256)
+|.+|||||||+|+|+|...+.++..+++|..........++.++.++||||+. ... ....+.+.... ....+|
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~~~l~~~D 90 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAASSSIGDVE 90 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTTSCCCCEE
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHHHHHhcCC
Confidence 699999999999999999877667666677666555566788899999999985 211 11111111111 125789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|++.+. ++..+..+++.+... ..|.++|+||+|+.
T Consensus 91 ~vl~Vvd~~~--~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 91 LVIFVVEGTR--WTPDDEMVLNKLREG-----KAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEEEETTC--CCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred EEEEEEeCCC--CCHHHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence 9999977764 778877777666532 27999999999984
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.52 E-value=7.7e-14 Score=110.91 Aligned_cols=111 Identities=22% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... .+...+++.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 15 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~d~ 83 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM---------RAGHG 83 (181)
T ss_dssp EECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH---------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH---------hhCCE
Confidence 59999999999999998753 33444444444444455665 4678999999876543333222 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+.+... .+ .|+++|+||+|+.+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLES 128 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccc
Confidence 9999888763211222344444433322 23 78999999999853
No 45
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3e-14 Score=112.21 Aligned_cols=113 Identities=20% Similarity=0.142 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++...........++ ..+.+|||||..+.. ......+ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~------~~~~~ 77 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI------SKGHA 77 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH------HHCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc------ccCCE
Confidence 599999999999999987532 1111222222222223333 468999999986532 1111122 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+..+.....|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 9999888753222233455666666543222379999999999853
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.51 E-value=5e-14 Score=113.92 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++........ ++.+.........+ .+..+.+|||||..+.......++ ..+|+
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 100 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY---------RGAVG 100 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHH---------TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHh---------ccCCE
Confidence 6999999999999999876432221 11111222222333 346789999999876543322221 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+...... ..++++|+||+|+..
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCccc
Confidence 99998887522112223455555544332 378999999999853
No 47
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.51 E-value=4.4e-14 Score=111.03 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++......+...+++.. ....++ +..+.+|||||..........++ ...|+
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---------~~~~~ 75 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGHCM---------AMGDA 75 (166)
T ss_dssp EESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC------------------------CCE
T ss_pred ECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhhhh---------hhCCE
Confidence 59999999999999998765444433333321 223344 44678999999765432222211 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+....++..+.+.... ...|+++|+||+|+.+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 76 YVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS 121 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccccccc
Confidence 99998888632222333444555443211 12799999999998643
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.51 E-value=4.1e-14 Score=112.27 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|++.... ....++ +.........+++ ..+.+|||||..+.. ......+ ..+|
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d 89 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY------RGAA 89 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH------HTCS
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---hhHHHHh------ccCC
Confidence 599999999999999987642 222222 2222223334444 578999999965432 1222222 4789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....++..+......+ .|+++|+||+|+.
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~ 133 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence 9999988875322223345556666654443 7899999999985
No 49
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.51 E-value=9.2e-14 Score=112.36 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++........ ++.+.........+++ ..+.+|||||..+.......++ ..+|+
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 96 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY---------RGAAG 96 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH---------TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh---------ccCCE
Confidence 5999999999999999876432221 2222233333445555 5789999999765543333322 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+......+ .++++|+||+|+.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~ 139 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccC
Confidence 999988875322222244556665554333 7899999999985
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.51 E-value=3.3e-14 Score=111.38 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++.........+++ ..+.+|||||..+... ....++ ..+|+
T Consensus 10 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~--~~~d~ 78 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-------IRDNYF--RSGEG 78 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH-------HHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH-------HHHHHh--hcCCE
Confidence 59999999999999998763 22333333333333445555 4789999999754321 111222 37899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+.... ...|+++|+||+|+..
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 79 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccc
Confidence 99998887532222334455556555432 1279999999999853
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.50 E-value=7.9e-14 Score=109.11 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....+++.........+++. .+.+|||||..+... .. ..++ ...|+
T Consensus 9 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~~~--~~~~~ 77 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----MR---DLYI--KNGQG 77 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----HH---HHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH----HH---HHHh--ccCCE
Confidence 699999999999999987542 22233333333344455554 488999999764321 11 1111 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccc
Confidence 99998887532222233445555554331 137899999999985
No 52
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.50 E-value=6.7e-14 Score=115.43 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe-eeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR-SKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|++........ ...+........ ..++ ..+.+|||||..........+. ..+|
T Consensus 17 vG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d 86 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY---------IGAS 86 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCSTTCEEE-TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH---------TTCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCC-CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh---------hcCC
Confidence 6999999999999999876421111 111111111111 1222 6789999999876554444332 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++.........++..+....+.+ .++++|+||+|+.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~ 130 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 9999988886332233345667777666554 7999999999985
No 53
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.50 E-value=1.8e-13 Score=117.35 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|+|... .++..+++|.........+++..+.+|||||+.+........ ...+.++....+|+++
T Consensus 9 vG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi 86 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDGNADVIV 86 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhccCCcEEE
Confidence 59999999999999999875 677777788877777788899999999999998754332211 1223344457899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++.+. . +....+...+.+. +. .|+++|+||+|+.
T Consensus 87 ~v~D~~~--~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 87 DIVDSTC--L-MRNLFLTLELFEM-EV---KNIILVLNKFDLL 122 (271)
T ss_dssp EEEEGGG--H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred EEecCCc--c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence 9976653 2 2333344444433 21 6899999999974
No 54
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.50 E-value=2.3e-14 Score=114.70 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....++.+.........+++ ..+.+|||||..+.... ...++ ..+|+
T Consensus 14 ~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~--~~~d~ 83 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY--RGAMG 83 (183)
T ss_dssp ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTT--TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHHH--hcCCE
Confidence 59999999999999997653 111112222333334455666 67899999997543211 11122 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+....+ .|+++|+||+|+.+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVND 127 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCc
Confidence 999988875321123334556666554333 79999999999853
No 55
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=1e-14 Score=134.33 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~v 79 (256)
+|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++....+.. .+++.. ....+|++
T Consensus 230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v 307 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQAANTADLV 307 (462)
T ss_dssp EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CCCCSCSEE
T ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhhhhcCCEE
Confidence 599999999999999998776777778888777666677899999999999997643211111 111111 22679999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|+|++.+. ..+..+..+++.+.. +|+++|+||+|+.
T Consensus 308 l~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~ 343 (462)
T 3geh_A 308 LLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLV 343 (462)
T ss_dssp EEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSS
T ss_pred EEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCC
Confidence 99988875 566777666665532 6999999999985
No 56
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=7.4e-14 Score=112.63 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .+..+........... +..+.+|||||..+....... ++ ..+|+
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~ 97 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA-------YY--RGAMG 97 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG-------GG--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH-------hc--cCCCE
Confidence 699999999999999987642211 1122222222233333 457899999997654433221 12 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+....+ .|+++|+||+|+.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 140 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 999988875322223344566666554333 7999999999985
No 57
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.49 E-value=3.3e-14 Score=113.94 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...+..+.........+++ ..+.+|||||..+. ......++ ..+|+
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 85 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY--RGAAG 85 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH--hcCCE
Confidence 5999999999999999876422 2122233333334445566 57899999996432 11222222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+......+ .|+++|+||+|+.
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~ 128 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence 999988875322222344555565554433 7999999999985
No 58
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=114.42 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++...... ..+..+.........+++ ..+.+|||||..+.. ... ..++ ..+|+
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---~~~----~~~~--~~~d~ 101 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---SIT----SAYY--RSAKG 101 (192)
T ss_dssp ECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH---HHH----HHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH---HHH----HHHh--cCCCE
Confidence 59999999999999998764221 122223333344455565 478999999964321 111 2222 37899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+......+ .++++|+||+|+.
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~ 144 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence 999988875321122234555665554433 7899999999985
No 59
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=3.5e-14 Score=131.40 Aligned_cols=109 Identities=23% Similarity=0.388 Sum_probs=83.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC-CCCcCc-----HHHHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVN-----YQALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~-~~~~~~-----~~~~~~i~~~l~~~ 74 (256)
+|.+|||||||+|+|++.+.+.++.++++|..+......++|.++.+|||||+. ++.... ......+ .
T Consensus 249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~------~ 322 (482)
T 1xzp_A 249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI------E 322 (482)
T ss_dssp ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH------H
T ss_pred ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh------h
Confidence 699999999999999998877788888888888777788899999999999998 543211 2233334 3
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+|++|+|+++++ ..+.++..+++.+ . .+|+++|+||+|+.
T Consensus 323 ~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 323 KADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV 363 (482)
T ss_dssp HCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred cccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence 7999999988765 3455565555443 2 27999999999985
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.49 E-value=6.8e-14 Score=109.78 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++.........++ +..+.+|||||..+....... .+ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~------~~~d~ 77 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL---YM------KNGQG 77 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHH---HH------HHCSE
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHH---Hh------ccCCE
Confidence 59999999999999998653 2222333332222333344 457899999998654322221 12 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+.+.... ...|+++|+||+|+.
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccc
Confidence 99998887532112223455555554321 127899999999985
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=1e-13 Score=110.79 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... .....+++.........+++ ..+.+|||||..+.. ... ..++ ..+|+
T Consensus 24 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~~~--~~~d~ 92 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIR---DNYF--RSGEG 92 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHH---HHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----HHH---HHHh--ccCCE
Confidence 59999999999999998763 23333444433444445555 478999999976432 111 1122 37899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998887532222334555566555432 127899999999985
No 62
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=1.3e-13 Score=126.29 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=76.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---------cHHHHHHHHHhh
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---------NYQALELIKGFL 71 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---------~~~~~~~i~~~l 71 (256)
+|++|||||||+|+|+|...+.++..+++|..+......++|..+.+|||||+...... .......+
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i---- 261 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI---- 261 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH----
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH----
Confidence 69999999999999999987678888888887777777889999999999998542211 11122223
Q ss_pred hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 72 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 72 ~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+|++++|+++.. ..+..+..+.+.+.+. + +++++|+||+|+.
T Consensus 262 --~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 262 --EKADVVVIVLDATQ-GITRQDQRMAGLMERR-G----RASVVVFNKWDLV 305 (439)
T ss_dssp --HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGS
T ss_pred --hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccCC
Confidence 36899999977764 4566666666655543 2 7999999999985
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=112.46 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... ...+.+++.........+++. .+.+|||||..+... .. ..++ ..+|+
T Consensus 20 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~---~~~~--~~~~~ 88 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA----IR---DNYF--RSGEG 88 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----HH---HHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH----HH---HHHH--hhCCE
Confidence 59999999999999998763 233334444443444555654 789999999765321 11 1112 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........++..+...... ...|+++|+||+|+.+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED 133 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccc
Confidence 99998887532222334455566555431 1279999999999853
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.49 E-value=1.2e-13 Score=111.29 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .++.+.........+++ ..+.+|||||..+... .....++ ..+|+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~~d~ 96 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYY--RNVHA 96 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHH--TTCCE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHh--cCCCE
Confidence 599999999999999987542211 12222233334445555 5789999999642210 1122222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+.+.... ...++++|+||+|+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998887522112234455666665421 137899999999985
No 65
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.48 E-value=6.9e-14 Score=114.22 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .++.+.........+++ ..+.+|||||..+.......+ + ..+|+
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~-------~--~~~d~ 100 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY-------Y--RGAAG 100 (200)
T ss_dssp EESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHH-------H--TTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHH-------h--ccCCE
Confidence 599999999999999987642211 22223233334445566 688999999964332222222 1 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~ 143 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcc
Confidence 999988875321122344555555544333 7899999999984
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.48 E-value=1.7e-13 Score=109.71 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE--EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... .....+++..........++.. +.+|||||..+.......++ ..+|+
T Consensus 10 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~ 78 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM---------RTGEG 78 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHH---------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHH---------hcCCE
Confidence 69999999999999998763 3333444444444455566654 67899999776543333222 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+...... ...|+++|+||+|+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 79 FLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 99998888632222334455555554322 237899999999985
No 67
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.48 E-value=8.6e-14 Score=110.59 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC---eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g---~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|++..... ...++.+.........+++ ..+.+|||||..........++ ..+|
T Consensus 12 ~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~d 81 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI---------YGAQ 81 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHH---------TTCS
T ss_pred ECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHH---------hhCC
Confidence 5999999999999999875321 1111222333444555655 6899999999865443322221 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
++++|+++++....+.-..+++.+.+........+ +++|+||+|+.
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 99999888753211222345555555322111134 89999999985
No 68
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=111.58 Aligned_cols=112 Identities=9% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++...+... .. .|.........+++..+.+|||||..+...... .++ ..+|+++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~ii 95 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWE-------HYY--KEGQAII 95 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGG-------GGG--GGCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--hcCCEEE
Confidence 599999999999999998632222 22 233345556677889999999999765432211 122 5789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.........++..+.+.... ....++++|+||+|+.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 998877521111222333333333211 0137999999999985
No 69
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=4e-14 Score=128.95 Aligned_cols=115 Identities=19% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+|||||+|+|++...+.++...++|..+......+.+. .+.+|||||+.+.........+....++ ..+|++
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~v 117 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCG 117 (423)
T ss_dssp ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEE
Confidence 5999999999999999998766677777777777777777765 8999999999886543222112222222 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
|+|++. ...+.+..+++.+.+.- .|+++|+||+|+...
T Consensus 118 llVvD~---~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 118 ILVTDS---APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGE 155 (423)
T ss_dssp EEECSS---SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTC
T ss_pred EEEEeC---CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCc
Confidence 999544 56677888888887762 799999999998543
No 70
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.47 E-value=1.3e-13 Score=108.66 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++..... .. .|.........+++..+.+|||||..+..... ..++ ..+|+++
T Consensus 13 ~G~~~~GKssl~~~l~~~~~~~---~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~--~~~d~ii 79 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGEVVT---TI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW-------RCYY--SNTDAVI 79 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCC---CC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGGG-------GGGC--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCC---cC-CcCccceEEEEECCEEEEEEECCCChhhhHHH-------HHHh--ccCCEEE
Confidence 5999999999999999876421 11 22234445566788999999999986432111 1222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+..... ....|+++|+||+|+.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDME 121 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCc
Confidence 99888753211222233333322211 0137999999999985
No 71
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=114.63 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .++.+.........+++ ..+.+|||||..........++ ..+|+
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 88 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY---------RGAVG 88 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGT---------TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHh---------ccCCE
Confidence 699999999999999987643222 12222233334455666 5789999999765433222221 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~ 131 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 999988775322223334566666554333 7899999999985
No 72
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.47 E-value=1.2e-13 Score=110.93 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++... ....+ |.........+++..+.+|||||..+. ......++ ..+|+++
T Consensus 24 ~G~~~~GKssl~~~l~~~~~---~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~--~~~d~ii 90 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGEDV---DTISP-TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNYF--ESTDGLI 90 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCCC---SSCCC-CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGGC--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCC---Ccccc-cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence 59999999999999998762 22222 223444456678899999999997431 11112222 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLP 132 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCC
Confidence 99888753211222233333333211 1127999999999985
No 73
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.47 E-value=3.3e-13 Score=107.91 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE--EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... .....+++..........++.. +.+|||||..+.......++ ..+|+
T Consensus 24 ~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~~d~ 92 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM---------RTGDG 92 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHH---------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHH---------hcCCE
Confidence 69999999999999998643 2233333333334445566654 56699999765443332222 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+..... ..|+++|+||+|+.+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH 137 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCST
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchh
Confidence 999988886322222344555554433221 268999999999854
No 74
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.7e-13 Score=108.31 Aligned_cols=109 Identities=8% Similarity=0.008 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++........ |.........+++..+.+|||||..+.......++ ..+|+++
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ii 88 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY---------TNTEFVI 88 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CGGGHHHH---------TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh---------cCCCEEE
Confidence 5999999999999999876432221 11122334556789999999999865443322222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence 99888763322233344444443211 1127999999999985
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.47 E-value=1e-13 Score=112.84 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeC----CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKG----GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~----g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|||||||+|+|++......+...+++. ........++ ...+.+|||||..+ +......++ ..
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~--~~ 96 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQISQYW--NG 96 (208)
T ss_dssp C----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHSTTC--CC
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHHHHH--hh
Confidence 6999999999999999983222333333332 2333344555 35789999999842 222222222 58
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~~ 124 (256)
+|++++|+++++....+....++..+....+. ....|+++|+||+|+.+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99999998887532223334566666665441 01279999999999853
No 76
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=8.9e-14 Score=113.43 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....+++.......... .+..+.+|||||..+.......++ ..+|+
T Consensus 30 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~ 98 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI---------IGVHG 98 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGT---------TTCCE
T ss_pred ECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHH---------hcCCE
Confidence 599999999999999987643 22223333222233333 456789999999876543322222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+..+. ...|+++|+||+|+.+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSP 143 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCcc
Confidence 99998887532222333444444443221 1368999999999853
No 77
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.47 E-value=1.7e-13 Score=119.92 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.....++...++|.........+ ++..+.+|||||..+. .+.+. .....++ .++|+
T Consensus 9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~--~~ad~ 83 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF--QMVQV 83 (307)
T ss_dssp ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh--ccCCE
Confidence 6999999999999999985445555556666666655555 5789999999997532 01111 1111122 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..+.+.+.+........|+++|+||+|+.
T Consensus 84 vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 84 LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 999988876321122223333343332111127999999999985
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.47 E-value=3.2e-13 Score=109.27 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++.....+. +.+ |...........+..+.+|||||..+..... ..++ ..+|+++
T Consensus 23 ~G~~~~GKSsl~~~l~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii 91 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQSSSKH-ITA-TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY--DNIDAVI 91 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC----C-CCC-CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCcccc-ccc-ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH--hcCCEEE
Confidence 699999999999999998753322 222 2224444556788999999999986432211 1222 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcC------CcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFG------KQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g------~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.........++..+.+... .....++++|+||+|+.
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 99888863211222233433333211 00137999999999985
No 79
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.46 E-value=4.2e-13 Score=108.00 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....+++..........++. .+.+|||||..+.... ...++ ..+|+
T Consensus 27 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~--~~~d~ 95 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQYM--RTGEG 95 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------C--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHH-------HHHhh--CcCCE
Confidence 599999999999999987532 22333333333344455554 5889999997543211 11222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........+++.+...... ...++++|+||+|+.+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 99998887632222234455555554331 1279999999999853
No 80
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.46 E-value=4.5e-13 Score=107.55 Aligned_cols=112 Identities=18% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++... .++..+++|.........+++..+.+|||||..+..... .+. ....++....+|++
T Consensus 13 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEI--IARDYIINEKPDLV 89 (188)
T ss_dssp ECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHH--HHHHHHHHHCCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHH--HHHHHHhccCCCEE
Confidence 69999999999999999763 455566666666666777889999999999998753221 111 11222222368999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++... + +....++..+.+ . ..|+++|+||+|+.
T Consensus 90 i~v~d~~~--~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 90 VNIVDATA--L-ERNLYLTLQLME---M--GANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEGGG--H-HHHHHHHHHHHT---T--TCCEEEEEECHHHH
T ss_pred EEEecchh--H-HHHHHHHHHHHh---c--CCCEEEEEEhhhcc
Confidence 99976652 2 233344444443 2 27899999999974
No 81
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.46 E-value=2.1e-13 Score=111.08 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .+..+..........+ +..+.+|||||..+. ......++ ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 83 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY--RGAMG 83 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSCC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG--GGCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCc-CCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh--cCCCE
Confidence 599999999999999997642211 1112222222233344 457899999998532 11222233 57899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+......+ .|+++|+||+|+.+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCc
Confidence 999988875321222344555665544333 79999999999853
No 82
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.46 E-value=1.7e-13 Score=108.73 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....++.+.........+++ ..+.+|||||.... ......++ ..+|+
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~ 82 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY--RGSDC 82 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH--hcCCE
Confidence 699999999999999987532 12122223333334455666 47899999996432 11222222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........+++.+...... ....|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99998887632222224455666555431 1236899999999985
No 83
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=112.71 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...++.+.........+++ ..+.+|||||..+.. .....++ ..+|+
T Consensus 35 vG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~d~ 104 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYY--RSANG 104 (201)
T ss_dssp EECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHH--TTCSE
T ss_pred ECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHH--hhCCE
Confidence 5999999999999999875321 1111222223334455666 588999999975321 1122222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+.+....+ .|+++|+||+|+.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 147 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccc
Confidence 999988875221122335666666654333 7899999999985
No 84
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.46 E-value=3.7e-13 Score=115.83 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|+|... .++.++++|.......... +..+.+|||||..+..... ++. ..+.++....+|++
T Consensus 9 vG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~--v~~~~~~~~~~d~v 84 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAK--VARDYLLSQRADSI 84 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHH--HHHHHHHTTCCSEE
T ss_pred ECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHH--HHHHHHhcCCCCEE
Confidence 69999999999999999863 5677777777666555555 7889999999998753222 211 12233433579999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++.+. . +....+...+.+. -.|+++|+||+|+.
T Consensus 85 i~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 85 LNVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp EEEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred EEEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 99977653 2 2233444445442 27999999999974
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.46 E-value=2.4e-13 Score=106.11 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....+++..........++ ..+.+|||||..+...... ..+ ..+|+
T Consensus 9 ~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~---~~~------~~~~~ 77 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD---QYM------RTGEG 77 (166)
T ss_dssp EESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHH---HHH------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHH---Hhh------ccCCE
Confidence 599999999999999987532 2222333333333344554 4578999999765432111 112 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.........+++.+...... ...|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 99998887532212234455555555431 1279999999999853
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.45 E-value=1.7e-13 Score=107.47 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++.... ...+ |..........++..+.+|||||..+.. .....++ .++|+++
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~d~~i 72 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYF--QNTQGLI 72 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHT--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHh--ccCCEEE
Confidence 699999999999999986532 1111 2223334456678899999999985321 1122222 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+..... ....|+++|+||+|+.
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 73 FVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence 99888753211222233333332110 1127899999999984
No 87
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.45 E-value=2.5e-13 Score=106.98 Aligned_cols=112 Identities=17% Similarity=0.081 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++++........ .+.+.........+++ ..+.+|||||..+... ....+ + ..+|
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---~------~~~d 77 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHC---L------QTGD 77 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CHH---H------HHCS
T ss_pred ECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhh---h------ccCC
Confidence 6999999999999999865432222 2233344444445665 4678999999875432 11111 1 3589
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCG
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchh
Confidence 999999888632222333455555554331 127999999999985
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=109.74 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........+++. .+.+|||||..+....... ++ ..+|+
T Consensus 26 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~~~ 94 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL-------CY--TNTDI 94 (201)
T ss_dssp ECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------GG--TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------hc--CCCcE
Confidence 69999999999999998762 333444444444445566664 5679999999765433221 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+....+ ..|+++|+||+|+.
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 99998887532 21111246666666543 27999999999985
No 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.45 E-value=1.8e-13 Score=109.85 Aligned_cols=112 Identities=17% Similarity=0.097 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeE-EEEeeeC-----------CeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKG-----------GFTLNIIDTPGLVEAGYVNYQALELIK 68 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~v~liDTPG~~~~~~~~~~~~~~i~ 68 (256)
+|.+|||||||+|+|++.... ....++.+.... ......+ ...+.+|||||.... .....
T Consensus 17 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~ 88 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------RSLTT 88 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------HHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------HHHHH
Confidence 599999999999999986532 111111111111 2233333 358899999998432 11222
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++ ..+|++++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus 89 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 89 AFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLE 140 (195)
T ss_dssp HTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCG
T ss_pred HHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 223 6899999998887522112224555555554331 127999999999985
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.45 E-value=4.9e-13 Score=107.86 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++.... .... .|...........+..+.+|||||..+. ......++ ..+|+++
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ii 95 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFN--EDMI-PTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYC--RGVSAIV 95 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC--CSCC-CCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHH--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CccC-CCCceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHH--ccCCEEE
Confidence 699999999999999987542 1111 2222333445677899999999996432 11222222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+.+... ....|+++|+||+|+.
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence 99888753211222233333332211 1137899999999985
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.45 E-value=2e-13 Score=109.43 Aligned_cols=109 Identities=8% Similarity=0.014 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++..........+. ......+++..+.+|||||..+..... ..++ ..+|+++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii 93 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY--TNTEFVI 93 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence 58999999999999999875322222221 123455688999999999986533221 1222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+.....+..+.+... ....++++|+||+|+.
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence 99888763222222333444333210 1127899999999985
No 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2.3e-13 Score=110.04 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........+++ ..+.+|||||..+....... ++ ..+|+
T Consensus 24 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~~--~~~d~ 92 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL-------SY--PMTDV 92 (194)
T ss_dssp EECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG-------GC--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHH-------hc--CCCCE
Confidence 59999999999999998753 23333343333334445555 57899999998765422211 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+..+ ..|+++|+||+|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 135 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 99998887532 22222256666666543 27999999999985
No 93
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4.7e-13 Score=108.62 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...+++.........+++ ..+.+|||||..+ .......+ ..+|+
T Consensus 34 ~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~------~~~d~ 101 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM------RWGEG 101 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh------ccCCE
Confidence 5999999999999999876422 222222222233344454 5689999999876 22222222 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....+++.+.+.... ...|+++|+||+|+.+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDH 146 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccc
Confidence 99998887532112223455555554321 1278999999999853
No 94
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.44 E-value=9.8e-14 Score=113.01 Aligned_cols=111 Identities=17% Similarity=0.088 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++....... .+..+.........+++ ..+.+|||||..+.. ......+ ..+|+
T Consensus 34 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~------~~~d~ 103 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNEFRENI-SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---SIAKSYF------RKADG 103 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH---HHHHHHH------HHCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCccC-CCCccceeEEEEEEECCEEEEEEEEECCCCcchh---hhHHHHH------hhCCE
Confidence 599999999999999987532111 11111122223344444 568999999975432 1111122 37899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+......+ .|+++|+||+|+.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 999988875322222344566666554333 7999999999984
No 95
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.44 E-value=7.8e-13 Score=106.75 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........+++ ..+.+|||||....... .. ++ ..+|+
T Consensus 27 vG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~-------~~--~~~~~ 94 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ER-------YL--NWAHA 94 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HH-------HH--TTCSE
T ss_pred ECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HH-------HH--hhCCE
Confidence 69999999999999998763 23333443333333344444 46789999998765432 11 11 57999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+...... ....++++|+||+|+.
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 99999988632222233455555554310 0127899999999984
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2.2e-13 Score=111.75 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...+++..........++ ..+.+|||||..+.......+ + ..+|+
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~ 99 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLS-------Y--PDTDV 99 (207)
T ss_dssp EECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGG-------C--TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhh-------c--CCCCE
Confidence 5999999999999999876432 222232222223345555 478999999987654222211 1 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +...+..++..+.+... + .|+++|+||+|+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 142 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLR 142 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhh
Confidence 99998887632 33333456666666432 2 7999999999984
No 97
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.44 E-value=3.7e-13 Score=109.03 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+....... .|.........+++..+.+|||||..+...... .++ ..+|+++
T Consensus 29 vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i 95 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF--PEVNGIV 95 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--hcCCEEE
Confidence 599999999999999987643221 233334556678889999999999865432211 112 5889999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence 99888763211222334444433211 1127899999999985
No 98
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.44 E-value=4.9e-13 Score=111.25 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=75.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
||.+|||||||++++++... ...+.++ ...........++ ..+.||||+|..........+. +++|
T Consensus 19 vGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~---------~~a~ 87 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI---------RDSA 87 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHH---------TTCS
T ss_pred ECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHh---------cccc
Confidence 69999999999999997653 2222222 2222333344444 4678999999876544333332 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
++++|+++++....+.-..++..+.+..+.+ .|+++|.||+|+...+.
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~ 135 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQ 135 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCC
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCc
Confidence 9999999987443344566777777777765 68999999999854333
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.43 E-value=6.2e-13 Score=107.88 Aligned_cols=109 Identities=8% Similarity=0.028 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++..... .. .|.........+.+..+.+|||||..+.......+ + ..+|+++
T Consensus 35 ~G~~~vGKSsLi~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~d~ii 101 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHY---F------QNTQGLI 101 (192)
T ss_dssp EESTTSSHHHHHHHHCSSCCEE--EE--EETTEEEEEEEETTEEEEEEECC-----CTTHHHH---H------HTCCEEE
T ss_pred ECCCCCCHHHHHHHHHhCCccc--cC--CcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHH---h------ccCCEEE
Confidence 5999999999999999876421 11 12223344556788999999999986543322222 2 4899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMP 143 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence 99888753211222233333332110 0127899999999984
No 100
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.43 E-value=1.7e-14 Score=117.52 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...++.+.........+++ ..+.+|||||..........++ ..+|+
T Consensus 39 vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 108 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG 108 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC-----------CCCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHh---------hcCCE
Confidence 6999999999999999875422 1112223334444555666 5789999999766543322222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
+++|+++++....+....++..+......+ .++++|+||+|+.+.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc
Confidence 999977775322223344555555544333 799999999998543
No 101
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.43 E-value=4.5e-13 Score=108.44 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++.........+++. .+.+|||||..+....... ++ ..+|+
T Consensus 29 vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 97 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPL-------SY--ADSDV 97 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG-------GC--TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHh-------hc--cCCcE
Confidence 69999999999999998763 233333433333334455554 4599999996543322111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++.. +......++..+...... .|+++|+||+|+.+
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence 99998887632 212124456666655332 79999999999853
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.43 E-value=4.3e-13 Score=109.31 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...+..+.........+++ ..+.+|||||..+....... ++ ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~ 83 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA-------FY--RGADC 83 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCG-------GG--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHH-------HH--hCCcE
Confidence 5999999999999999876422 1112223333333444544 57899999997553322211 11 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+...... ....|+++|+||+|+.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99998887532112223455555554431 1137899999999985
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.43 E-value=2.1e-13 Score=108.45 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|+|++..... ...++.+.........++ ...+.+|||||..+.. .....++ ..+|
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~d 83 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFY--RGAD 83 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCS--TTCC
T ss_pred ECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHh--hcCC
Confidence 5999999999999999876421 111222233333444444 3588999999964322 1112222 5899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....++..+...... ....|+++|+||+|+.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 999998887532222334455555554431 1237999999999984
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.43 E-value=2.7e-13 Score=109.18 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++...... .+ |.........+++..+.+|||||..+.......+ + ..+|+++
T Consensus 28 ~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~-------~--~~~d~ii 94 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCY-------F--SDTDAVI 94 (189)
T ss_dssp EEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSS-------S--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHH-------h--hcCCEEE
Confidence 58999999999999988764321 11 2223344556778999999999987643322111 1 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+.+... ....|+++|+||+|+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLP 136 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTST
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCc
Confidence 99888753211222233333322211 1127899999999985
No 105
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.7e-13 Score=112.46 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++.+.........+++ ..+.+|||||.... ......++ ..+|+
T Consensus 32 vG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 101 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY--RSANA 101 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS--TTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH--hcCCE
Confidence 599999999999999987532 22222223333334455666 47899999996421 11222222 68999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+....... .++++|+||+|+.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 144 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 999988875321122245566666554333 7899999999985
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.7e-13 Score=110.68 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++...... ....+++ ...+.+..+.+|||||..+.......++... + ..+|++
T Consensus 54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~--~~~~~~ 122 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTR---A--KFVKGL 122 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH---G--GGEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccccCCCce------eeeecCCeEEEEECCCCchHHHHHHHHHHhh---c--ccCCEE
Confidence 69999999999999998763211 0111111 1123567789999999977644333333221 1 368999
Q ss_pred EEEEeCC-CCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCCC
Q 025189 80 LYADRLD-AYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d-~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~~ 124 (256)
++|++++ +.........++..+..... .....|+++|+||+|+.+
T Consensus 123 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 123 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 9998776 31111111122322222211 011278999999999853
No 107
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=2.7e-13 Score=108.25 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++++........ |.........+++..+.+|||||..+....... ++ ..+|+++
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ii 90 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIGEVVTTKP----TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC-------YY--ADTAAVI 90 (183)
T ss_dssp EEETTSSHHHHHHHTCCSEEEEECS----STTCCEEEEEETTEEEEEEEEC----CCTTGGG-------TT--TTEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCcCccCC----cCccceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh--ccCCEEE
Confidence 5999999999999999876522222 111223445667899999999998764322211 11 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++....+.....+..+.+... ....|+++|+||+|+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP 132 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence 99888753211222233333322210 1237999999999985
No 108
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.43 E-value=1.4e-12 Score=116.25 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=81.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC--cHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... .++..+.+|..........++..+.+|||||+.+.... ..-....+... ...+|+
T Consensus 173 vG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~ad~ 249 (357)
T 2e87_A 173 AGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL--RYLGNL 249 (357)
T ss_dssp ECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG--GGTCSE
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH--HhcCCE
Confidence 69999999999999999873 45555666666666666677889999999999764321 11111122211 136899
Q ss_pred EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+|++++... ++ .....++..+...++ ..++++|+||+|+.
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 99997765432 23 334567777777664 27999999999984
No 109
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.43 E-value=5e-13 Score=116.59 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCCCCC------cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccE
Q 025189 41 GGFTLNIIDTPGLVEAG------YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKS 113 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~------~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~ 113 (256)
.+.++++|||||+.+.. .....+......++ ..+|++++|++.....+...+ ..+++.+... ..++
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~-----~~~~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPE-----GKRT 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-----CSSE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCC-----CCcE
Confidence 34679999999997522 12223333333444 488999999765332343333 3555554332 2799
Q ss_pred EEEEecccCCC
Q 025189 114 LLVLTHAQLCP 124 (256)
Q Consensus 114 ivv~Tk~D~~~ 124 (256)
++|+||+|+.+
T Consensus 202 i~v~NK~Dl~~ 212 (315)
T 1jwy_B 202 IGVITKLDLMD 212 (315)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEcCcccCC
Confidence 99999999864
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.42 E-value=2.6e-13 Score=108.45 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++.........+++. .+.+|||||..+...... .++ ..+|+
T Consensus 11 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ 79 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY--PQTDV 79 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GGC--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hhc--cCCcE
Confidence 59999999999999997653 222333333333334455554 566999999865332211 111 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+..+ ..|+++|+||+|+.
T Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 80 SLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence 99998887522 22222246666666544 27999999999984
No 111
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.42 E-value=9e-13 Score=107.10 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~~~ 76 (256)
+|.+|||||||+|.+++............+......... .....+.+|||||........ ..++ .++
T Consensus 26 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------~~~ 96 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF---------RGT 96 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH---------HTC
T ss_pred ECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc---------ccC
Confidence 599999999999999986332211111112222222221 344689999999987643322 2222 479
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|++++|+++++ ++.+....+.+.+.+.....-..++++|+||+|+.
T Consensus 97 ~~~i~v~d~~~-~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 97 GALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp SEEEEEEETTS-CCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CEEEEEEECCC-chHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 99999998886 34455555656665542111137999999999985
No 112
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.42 E-value=6e-13 Score=106.86 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+.......+ |.........+++..+.+|||||..... .....++ ..+|+++
T Consensus 22 vG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~~~~i 88 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYF--ENTDILI 88 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHH--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence 5999999999999999985432222 1222334456678999999999975321 1112222 5899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..........+..+.+..+ ....|+++|+||+|+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLL 130 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence 99888753211122223333222111 1137899999999985
No 113
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=110.57 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ..+.+++.........+++. .+.+|||||..+...... .++ ..+|+
T Consensus 40 vG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~--~~~d~ 108 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP-------LFY--PDASV 108 (214)
T ss_dssp EECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------------CEEE
T ss_pred ECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHH-------HHh--ccCCE
Confidence 599999999999999987632 22233333333334455554 689999999764322111 111 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+.+... + .|+++|+||+|+.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 151 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhh
Confidence 99998887522 22222245566655432 2 7999999999985
No 114
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.42 E-value=2e-13 Score=112.92 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+++... ........+.+...........+..+.+|||||..........++ ..+|++
T Consensus 21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~~ 91 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY---------IQAQCA 91 (221)
T ss_dssp EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH---------TTCCEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH---------hcCCEE
Confidence 5999999999999955432 222222233333333333333456889999999765544433332 589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+++++.........++..+.+.... .|+++|+||+|+.
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCccc
Confidence 9998888632222334566666665432 7999999999985
No 115
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.6e-13 Score=111.10 Aligned_cols=112 Identities=20% Similarity=0.091 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...++...........++ ..+.+|||||..+.. ......+ ..+|+
T Consensus 14 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d~ 82 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQRLSI------SKGHA 82 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHHHHHH------HHCSE
T ss_pred ECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHHHHhh------ccCCE
Confidence 5999999999999999865421 112222222222233343 478999999976432 1111112 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....++..+.+..+.....|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 999988875321122234555565554322237899999999985
No 116
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.41 E-value=5.9e-13 Score=108.61 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|++.+........ |.........+++..+.+|||||......... .++ ..+|+++
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i 97 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL--PAINGIV 97 (198)
T ss_dssp EEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG--GGCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH--hcCCEEE
Confidence 5999999999999999876432221 11222345567889999999999765432211 112 4789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..-......++..+.+... ....|+++|+||+|+.
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRP 139 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence 99888753211222334443333211 1137899999999985
No 117
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.2e-13 Score=110.06 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++....... ...+.+...........+..+.+|||||... +......++ ..+|++
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~--~~~d~~ 99 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYY--RGAMGF 99 (191)
T ss_dssp EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHH--TTCCEE
T ss_pred ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH--ccCCEE
Confidence 599999999999999986532111 1112222222233334567899999999532 112222223 689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|+++++....+....+++.+......+ .|+++|+||+|+.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 141 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDME 141 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 99988875322233345666666654343 7999999999984
No 118
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=8.2e-13 Score=106.41 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++..... ...+..+.........++ +..+.+|||||..+.......++ ..+|+
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ 90 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY---------RGAQG 90 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH---------TTCCE
T ss_pred ECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh---------ccCCE
Confidence 5999999999999999876421 111222222222333444 45789999999765433322222 58999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.........++..+...... ...++++|+||+|+.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCc
Confidence 99998887522112223344444443221 237899999999984
No 119
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.40 E-value=8.9e-13 Score=107.38 Aligned_cols=114 Identities=18% Similarity=0.030 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ....++++.........+++. .+.+|||||..... ...... ++ ..+|+
T Consensus 29 vG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~~~---~~--~~~d~ 99 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLRDH---CL--QTGDA 99 (195)
T ss_dssp ECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHHHH---HH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhHHH---hh--ccCCE
Confidence 699999999999999875432 122233344444444556664 56789999986421 111111 12 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+++|+++++....+....++..+.+.... ...|+++|+||+|+.+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLAR 144 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccc
Confidence 99999888632212233455555554321 1279999999999854
No 120
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.40 E-value=5.3e-13 Score=109.66 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHH-HHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALE-LIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~-~i~~~l~~~~~ 76 (256)
+|.+|||||||+|+|++... ...+.+++... ....++ +..+.+|||||..+ +.. ....++ .++
T Consensus 13 vG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~--~~~ 79 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQY--RDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFK--SSA 79 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEE--EEEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHG--GGE
T ss_pred ECCCCCCHHHHHHHHhCCCc--ccccCCcceee--EEEEecCCCccEEEEEECCCChh-------HHHHHHHHHH--hhC
Confidence 69999999999999998763 23333333322 234454 67899999999852 221 122222 589
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhc----CCcccccEEEEEecccCCC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~----g~~~~~~~ivv~Tk~D~~~ 124 (256)
|++++|+++++ +........+.+.+.+ ......|+++|+||+|+.+
T Consensus 80 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 80 RAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred CEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 99999987763 2222333333333321 1122379999999999853
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.40 E-value=3.7e-13 Score=109.83 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++..... .+.+++.........+++ ..+.+|||||..+....... ++ ..+|+
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 99 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL-------SY--PDTDV 99 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCS--SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGG-------GC--TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCcCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHH-------hc--CCCCE
Confidence 5999999999999999876422 222222222222344555 47899999997543222111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+.+... + .|+++|+||+|+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 142 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLR 142 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhh
Confidence 99998888632 22222456666666432 2 7999999999985
No 122
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.39 E-value=4.2e-13 Score=119.10 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCC----cCcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAG----YVNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~----~~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|||||||+|+|++... .++.++.+|..+......+++ ..+.+|||||+.+.. .....+++.+. .
T Consensus 164 vG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~------~ 236 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R 236 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred eCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH------h
Confidence 69999999999999998764 456666677777766666765 889999999986422 23345555553 6
Q ss_pred CcEEEEEEeCCC---CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDA---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~---~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|++|+|+++++ ....+....+++.|......-..+|+++|+||+|+.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 899999988875 222223345556666543222348999999999984
No 123
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.7e-13 Score=120.60 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=81.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (256)
||.++||||||+|+|+|... .+++++.+|..+......+.+.++.++||||+.+..... .+++..++ .+
T Consensus 78 vG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~------~a 150 (376)
T 4a9a_A 78 VGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR------TC 150 (376)
T ss_dssp ECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH------HC
T ss_pred ECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH------hc
Confidence 69999999999999999874 678899999999999999999999999999998754322 24444443 78
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQL 122 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~ 122 (256)
|++++|++.++ . ..+.+.+..-...++.. ..+|.++++||.|.
T Consensus 151 d~il~vvD~~~--p-~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNK--P-LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTS--H-HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccccccccCc--c-HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999976653 1 23333333322333422 23688999999986
No 124
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.39 E-value=3.2e-13 Score=110.62 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .+...+++.........+++. .+.+|||||..+....... ++ ..+|+
T Consensus 36 vG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 104 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL-------SY--PQTDV 104 (204)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGG-------GC--TTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHH-------Hh--ccCCE
Confidence 59999999999999997653 233334444444444455555 4559999998543322111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+... + .|+++|+||+|+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 147 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhc
Confidence 99998887632 22222246666666542 2 7999999999984
No 125
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.38 E-value=1.8e-12 Score=112.02 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCc-EEEEEEeCCCCCCCHHHH-HHHHHHHhhcCCcccccE
Q 025189 42 GFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTID-VLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKS 113 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d-~vL~v~~~d~~r~~~~~~-~~~~~l~~~~g~~~~~~~ 113 (256)
+..+++|||||+.+... .. ..+...+..++ ...+ ++|+|++.+. .+...+. .+++.+.. . ..++
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~---~--~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDALKIAKEVDP---Q--GQRT 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHHHHHHHHHCT---T--CSSE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHHHHHHHHhCC---C--CCeE
Confidence 36899999999986321 11 13333344444 3555 4457877654 3444442 34444332 2 2799
Q ss_pred EEEEecccCCC
Q 025189 114 LLVLTHAQLCP 124 (256)
Q Consensus 114 ivv~Tk~D~~~ 124 (256)
++|+||+|+.+
T Consensus 196 i~V~NK~Dl~~ 206 (299)
T 2aka_B 196 IGVITKLDLMD 206 (299)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEEccccCC
Confidence 99999999863
No 126
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.38 E-value=2.4e-12 Score=114.78 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCCCCCCc------CcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEE
Q 025189 42 GFTLNIIDTPGLVEAGY------VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~iv 115 (256)
+..+++|||||+.+... ........+..++ .++|++++|+...... ......++.+...-..+ +++++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~--~~~~~~~~l~~~~~~~~--~~~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQD--LATSDAIKISREVDPSG--DRTFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSC--GGGCHHHHHHHHSCTTC--TTEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCC--cCCHHHHHHHHHhcccC--CCEEE
Confidence 44689999999987521 1122233333333 5899888885443222 12223333333332222 68999
Q ss_pred EEecccCCCCC
Q 025189 116 VLTHAQLCPPD 126 (256)
Q Consensus 116 v~Tk~D~~~~~ 126 (256)
|+||+|+.+..
T Consensus 209 V~nK~Dl~~~~ 219 (360)
T 3t34_A 209 VLTKIDLMDKG 219 (360)
T ss_dssp EEECGGGCCTT
T ss_pred EEeCCccCCCc
Confidence 99999986443
No 127
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.38 E-value=2.5e-12 Score=102.23 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++..... ..++..........+++ ..+.+|||||... .. .+ .++|+
T Consensus 13 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~---~~------~~~d~ 75 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AK---FS------GWADA 75 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HH---HH------HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hH---HH------HhCCE
Confidence 6999999999999999876432 22232233334445565 4678999999754 11 22 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+....+++.+....... ...|+++|+||+|+.
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999988875321122233434454443211 137899999999983
No 128
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.37 E-value=7.2e-13 Score=127.78 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEE-------Eee--------------------eCC-----------
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-------SRS--------------------KGG----------- 42 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~-------~~~--------------------~~g----------- 42 (256)
+|.+|+|||||+|+|+|..++.++..+++...+... ... +.+
T Consensus 75 vG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~ 154 (695)
T 2j69_A 75 LGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKK 154 (695)
T ss_dssp ECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSC
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccc
Confidence 599999999999999999887776644431111100 000 011
Q ss_pred -------------------eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189 43 -------------------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 103 (256)
Q Consensus 43 -------------------~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~ 103 (256)
..+++|||||+.+...........+ ..+|++|||++.+. ..+..+..++.....
T Consensus 155 ~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i------~~aD~vL~Vvda~~-~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 155 QAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYV------NNCHAILFVMRASQ-PCTLGERRYLENYIK 227 (695)
T ss_dssp CSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHH------HSSSEEEEEEETTS-TTCHHHHHHHHHHTT
T ss_pred cccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHH------HhCCEEEEEEeCCC-ccchhHHHHHHHHHH
Confidence 3589999999986432222222222 47999999988764 466677665542222
Q ss_pred hcCCcccccEEEEEecccCC
Q 025189 104 TFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 104 ~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.. -.++++|+||+|+.
T Consensus 228 ~~----~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 228 GR----GLTVFFLVNAWDQV 243 (695)
T ss_dssp TS----CCCEEEEEECGGGG
T ss_pred hh----CCCEEEEEECcccc
Confidence 11 26799999999985
No 129
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.37 E-value=6.8e-13 Score=109.23 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC------------CeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------GFTLNIIDTPGLVEAGYVNYQALELIK 68 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~v~liDTPG~~~~~~~~~~~~~~i~ 68 (256)
+|.+|||||||+|+|++.... ....++.+.........++ ...+.+|||||.. .+.....
T Consensus 31 vG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~ 102 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------RFRSLTT 102 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------HHHHHHH
T ss_pred ECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------hHHhHHH
Confidence 599999999999999987541 1111111111112222333 4678999999952 2222233
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189 69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~ 123 (256)
.++ ..+|++++|+++++. .....+...+..+.... ...++++|+||+|+.
T Consensus 103 ~~~--~~~d~iilV~D~~~~---~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 103 AFF--RDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp HHH--TTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred HHh--cCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 333 689999999887752 11122223333332211 237899999999985
No 130
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=3.1e-12 Score=114.40 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC--CcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA--GYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~--~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|+|... .++....+|..+......++|..+.++||||+... ...-+.+...+. . ...+|+
T Consensus 185 vG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~--~~~aD~ 260 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-E--AKYSDA 260 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-G--GGGSSE
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-H--HHhCCE
Confidence 69999999999999999874 45555667777767777888999999999998542 111122222222 1 257899
Q ss_pred EEEEEeCCCCC--CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR--VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r--~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|++++... .......+.+.+......+ .++++|+||+|+.
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGC
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCC
Confidence 99998776421 1111112233344332123 7899999999985
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.37 E-value=5.5e-13 Score=107.11 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ..+.++..........++ ...+.+|||||......... .++ ..+|+
T Consensus 13 ~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~~~ 81 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA 81 (184)
T ss_dssp EESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc--CCCcE
Confidence 599999999999999987532 222222222222233344 35789999999754322211 111 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+..+ + .|+++|+||+|+.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~ 124 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 124 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhh
Confidence 99998887522 11111345566655533 2 7999999999984
No 132
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.37 E-value=4.4e-12 Score=101.66 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH----HHHHHHHHhhh--cC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY----QALELIKGFLL--NK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~----~~~~~i~~~l~--~~ 74 (256)
+|.+|||||||+|++++... ..+..+++|........ . .+.+|||||+.+....+. .+...+..++. ..
T Consensus 7 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 81 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred ECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 59999999999999999863 44444555555444332 3 679999999876543332 23333333332 35
Q ss_pred CCcEEEEEEeCCCCCCCHH------------HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDL------------DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~------------~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++++++|.+.+ .+... +..+++.+.. . ..|+++|+||+|+.
T Consensus 82 ~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 82 NIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLRE---L--DIPTIVAVNKLDKI 135 (190)
T ss_dssp GCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHH---T--TCCEEEEEECGGGC
T ss_pred cCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHh---c--CCceEEEeehHhcc
Confidence 678888885544 22211 1122222222 1 27899999999985
No 133
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.37 E-value=7.5e-13 Score=108.59 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... ...+.+++.........+++ ..+.+|||||.......... ++ ..+|+
T Consensus 15 ~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 83 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL-------SY--RGADI 83 (212)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CG-------GG--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------hc--cCCCE
Confidence 59999999999999998653 22333333333333444554 57899999998764322111 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+....+ ..|+++|+||+|+.
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence 99998887532 22222256666666543 27999999999984
No 134
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=113.52 Aligned_cols=108 Identities=9% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++.... ... .|...........+..+.||||||..........++ ..+|++|
T Consensus 171 vG~~~vGKSsLl~~l~~~~~~--~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~ad~vi 237 (329)
T 3o47_A 171 VGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF---------QNTQGLI 237 (329)
T ss_dssp EESTTSSHHHHHHHTCSSCCE--EEE--EETTEEEEEEEETTEEEEEEECC-----CCSHHHHH---------TTEEEEE
T ss_pred ECCCCccHHHHHHHHhCCCCC--Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHh---------ccCCEEE
Confidence 599999999999999987642 222 234444556677889999999999655443322222 5899999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++.. +......+.+.+...... ..|+++|+||+|+.
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~ 279 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLP 279 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTST
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCC
Confidence 999987633 323333333333322212 27899999999985
No 135
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.36 E-value=2.8e-13 Score=107.96 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++..........++ ..+.+|||||..+....... ++ ..+|+
T Consensus 14 ~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 82 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPL-------SY--RGADV 82 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGGG-------GG--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHh-------hc--cCCCE
Confidence 59999999999999998653 22222222211111223333 35569999998654322211 11 57999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+....+ ..|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 99998887522 22222246666666543 27999999999984
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=2.9e-12 Score=105.52 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|||||||+|+|++....... ...+++ ...+.+..+.+|||||...... .....++... ..+|++
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~--~~~~~~ 86 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRA--KFVKGL 86 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE------ETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHG--GGEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCeeeecCceE------EEEeeCceEEEEECCCcHHHHH---HHHHHHHhcc--ccCCEE
Confidence 599999999999999987632111 111111 1223566789999999965431 1111222111 348999
Q ss_pred EEEEeCC-CC-CCCHHHHHHHHHHHhh----cCCcccccEEEEEecccCCC
Q 025189 80 LYADRLD-AY-RVDDLDRQIIKAVTGT----FGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d-~~-r~~~~~~~~~~~l~~~----~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++|++++ +. ++... ...+..+... ...+ .|+++|+||+|+..
T Consensus 87 i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 87 IFMVDSTVDPKKLTTT-AEFLVDILSITESSCENG--IDILIACNKSELFT 134 (218)
T ss_dssp EEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTT
T ss_pred EEEEECCCChHHHHHH-HHHHHHHHhcccccccCC--CCEEEEEEchHhcc
Confidence 9998887 32 24333 3344433332 1222 78999999999854
No 137
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.35 E-value=1.3e-12 Score=107.87 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++... ...+.+++.........++ ...+.+|||||......... .++ ..+|+
T Consensus 33 vG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~ 101 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LCY--SDSDA 101 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HHc--CCCeE
Confidence 69999999999999998763 2222333332223233343 35789999999764332221 112 58999
Q ss_pred EEEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++...... ...+++.+.+... + .|+++|+||+|+.
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~ 144 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhc
Confidence 999998886321122 3456677766643 2 7999999999984
No 138
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=1.7e-12 Score=122.08 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cccCCCCCcceeEEEEee------------------------------------eCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSRS------------------------------------KGG 42 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~------------------------------------~~g 42 (256)
+|.+|+|||||+|+|+|...+ .++..+.++......... +.+
T Consensus 71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 150 (550)
T 2qpt_A 71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPN 150 (550)
T ss_dssp EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCC
T ss_pred ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccc
Confidence 589999999999999998764 345444443321111110 000
Q ss_pred ---eEEEEEeCCCCCCCCcC--cH--HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEE
Q 025189 43 ---FTLNIIDTPGLVEAGYV--NY--QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115 (256)
Q Consensus 43 ---~~v~liDTPG~~~~~~~--~~--~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~iv 115 (256)
..+++|||||+.+.... .. .+......++ ..+|++|+|++.+.....+.+..+++.+... ..++++
T Consensus 151 ~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~pvil 223 (550)
T 2qpt_A 151 QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH-----EDKIRV 223 (550)
T ss_dssp HHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----GGGEEE
T ss_pred cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----CCCEEE
Confidence 35899999999863211 00 0112222222 4789999998876534677777777766543 278999
Q ss_pred EEecccCC
Q 025189 116 VLTHAQLC 123 (256)
Q Consensus 116 v~Tk~D~~ 123 (256)
|+||+|+.
T Consensus 224 VlNK~Dl~ 231 (550)
T 2qpt_A 224 VLNKADMV 231 (550)
T ss_dssp EEECGGGS
T ss_pred EEECCCcc
Confidence 99999985
No 139
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.34 E-value=3.9e-12 Score=113.27 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHH-HHHHHHHhhcCCcccccEE
Q 025189 42 GFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSL 114 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~-~~~~~l~~~~g~~~~~~~i 114 (256)
+.++++|||||+..... .. +.+...+..++. ...+++|+|++.+. .+...+. .+++.+. ..+ .+++
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~---~~~--~~~i 201 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKVAKEVD---PQG--QRTI 201 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHHHHHHHHHC---TTC--TTEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHHHHHHHHhC---cCC--CceE
Confidence 46799999999986321 11 233334444443 45567777766553 3444433 2444332 222 7999
Q ss_pred EEEecccCCC
Q 025189 115 LVLTHAQLCP 124 (256)
Q Consensus 115 vv~Tk~D~~~ 124 (256)
+|+||+|+.+
T Consensus 202 ~V~NK~Dl~~ 211 (353)
T 2x2e_A 202 GVITKLDLMD 211 (353)
T ss_dssp EEEECGGGSC
T ss_pred EEeccccccC
Confidence 9999999863
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.34 E-value=1.1e-12 Score=107.86 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|+|++.... ..+.++..........++ ...+.+|||||......... .++ ..+|+
T Consensus 34 vG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~ 102 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA 102 (205)
T ss_dssp EESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hhc--cCCCE
Confidence 699999999999999987542 222222222222233344 35789999999754322111 111 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+.+... + .|+++|+||+|+.
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~ 145 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 145 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhc
Confidence 99998887522 11111345566665543 2 7899999999984
No 141
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=2.6e-12 Score=116.16 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---------------------KG---GFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~liDTPG~~~~ 56 (256)
+|.+|||||||+|+|++.. +.++.++.+|..+...... ++ +.++.+|||||+...
T Consensus 6 vG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~ 84 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG 84 (397)
T ss_dssp EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred ECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence 6999999999999999987 5677777777665544321 12 257899999999754
Q ss_pred CcCcHHHHHHHHHhh-hcCCCcEEEEEEeCCC
Q 025189 57 GYVNYQALELIKGFL-LNKTIDVLLYADRLDA 87 (256)
Q Consensus 57 ~~~~~~~~~~i~~~l-~~~~~d~vL~v~~~d~ 87 (256)
...... ...+++ ..+.+|++++|++..+
T Consensus 85 a~~~~~---l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 85 AHEGRG---LGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred hhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence 322111 112222 2268999999988865
No 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.31 E-value=4.8e-12 Score=102.73 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCC-CcCcHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEA-GYVNYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~-~~~~~~~~~~i~~~l~~~~~d 77 (256)
+|.+|||||||+|++.|.....++...+++.........++|. .+.+|||+|.... ......+ + ...|
T Consensus 12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~------~~~~ 82 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M------QVGD 82 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H------HHCS
T ss_pred ECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c------ccCC
Confidence 6999999999999999754322333333333333444566665 4578999997541 1111111 1 3579
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++....+....++..+.+.... ...++++|.||+|+.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhh
Confidence 999999898632222233455555554221 126899999999984
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.30 E-value=1.3e-11 Score=99.47 Aligned_cols=105 Identities=16% Similarity=0.045 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++.... ....+ |.........+++. .+.+|||||..... .+ ..+|+
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~------~~~~~ 88 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA------AWVDA 88 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH------HHCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhhh--------ee------cCCCE
Confidence 699999999999999987542 11222 22233345566764 56779999985421 22 36899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++....+.-..++..+..... ....++++|+||+|+.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 9999888863211222445565655432 1237899999999984
No 144
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=8e-12 Score=111.64 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=59.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC------CCcceeE--EEEeeeCCe--EEEEEeCCCCCCCCc-------CcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRPV--MVSRSKGGF--TLNIIDTPGLVEAGY-------VNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~------~~t~~~~--~~~~~~~g~--~v~liDTPG~~~~~~-------~~~~~ 63 (256)
+|.+|+|||||+|+|++...+..+... ..|.... .......+. .+++|||||+++... ....+
T Consensus 43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i 122 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 122 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence 699999999999999997654333211 1122111 122233444 689999999976421 11111
Q ss_pred HHHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+..++ ...++|+++|++......+...+..+++.+. .. .|+|+|+||+|+.
T Consensus 123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~ 187 (361)
T 2qag_A 123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTL 187 (361)
T ss_dssp HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSS
T ss_pred HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCC
Confidence 11111222 1235678888854433457777776666542 22 7899999999985
No 145
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=3e-12 Score=106.07 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++.|.....++..++++.........++|. .+.+|||+|.... .. .+... .....|+
T Consensus 43 vG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~~---~l~~~-~~~~a~~ 114 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----NE---WLHDH-CMQVGDA 114 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----HH---HHHHC-CCCCCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----hh---hHHHH-HHhhCCE
Confidence 6999999999999999865433343333333434444566765 4578999986421 11 12211 1256899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++..-.+....+...+.+.... ...|+++|.||+|+.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEChHHh
Confidence 99999998632112223344445443211 127899999999985
No 146
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.29 E-value=1.1e-11 Score=99.62 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEe---ee--CCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSR---SK--GGFTLNIIDTPGLVEAGYVNYQALELIK 68 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~---~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~ 68 (256)
+|.+|||||||+|.+.|......... ...|........ .+ .+..+.+|||||..+......
T Consensus 20 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 92 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK------- 92 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH-------
T ss_pred ECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH-------
Confidence 69999999999999987643211100 001111111111 12 245789999999865432111
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHH----HHhhcCCcccccEEEEEecccCC
Q 025189 69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA----VTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~----l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.++ ..+|++++|+++++.+ ...+...++. +.+........|+++|+||+|+.
T Consensus 93 ~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 93 LIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 122 6899999998887422 2223333333 33321111237999999999984
No 147
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.28 E-value=8.2e-12 Score=115.83 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+|||||||+|+|++... +... .|.........+.+..+.+|||||..+...... .++ ..+|++|
T Consensus 328 vG~~nvGKSsLl~~l~~~~~--~~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~ad~~i 394 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR-------HYY--TGTQGLI 394 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSSC--CCCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGG-------GGG--TTCCEEE
T ss_pred EcCCCCCHHHHHHHHhcCCC--CCcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHHHH-------HHh--ccCCEEE
Confidence 69999999999999998873 2222 344555566777889999999999765432211 122 6899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++..-.......+..+.+... ....|+++|+||+|+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 436 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSS
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCC
Confidence 99888763211222223333322211 0127999999999984
No 148
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.28 E-value=2.5e-11 Score=98.70 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|.|+|....... .++.+.........++|. .+.+|||||..........+. ..+|+
T Consensus 11 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~---------~~~~~ 80 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY---------RGAVG 80 (199)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHH---------TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHH---------hcCCE
Confidence 699999999999999997542221 122223333445567775 567899999765433222222 47899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++......+....++..+...... ..++++|+||+|+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccc
Confidence 99998876421111222344445443222 27899999999985
No 149
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.28 E-value=2.6e-12 Score=103.29 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (256)
+|.+|||||||+|.+.+......+...++ +.........+ ....+.+|||||..........+ + .
T Consensus 8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~ 78 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF-------M--T 78 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHH-------H--H
T ss_pred ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHH-------c--c
Confidence 69999999999999999632222222222 12222222222 35688999999975322221111 1 3
Q ss_pred CCcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+.|++++|+++++. +.......++..+..... + .|+++|.||+|+.
T Consensus 79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~ 125 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVS 125 (184)
T ss_dssp HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGC
T ss_pred CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcc
Confidence 67899999888752 111222344555544322 2 7899999999984
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.93 E-value=3.6e-13 Score=109.97 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++..........++ ..+.+|||||..+.......+ + ..+|+
T Consensus 36 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~d~ 104 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS-------Y--PQTDV 104 (204)
Confidence 69999999999999997653 22222233222222333444 456699999976543221111 1 47899
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......++..+....+ ..|+++|+||+|+.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~ 147 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
Confidence 99998776533 33332355555555433 27899999999985
No 151
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.26 E-value=2.8e-11 Score=116.93 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE-------------------------------------------
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS------------------------------------------- 37 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~------------------------------------------- 37 (256)
+|.+++||||++|+|+|....+.+.. .+|+.+....
T Consensus 57 vG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~i 135 (772)
T 3zvr_A 57 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 135 (772)
T ss_dssp EECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCC
T ss_pred ECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcc
Confidence 59999999999999999876444432 2333221111
Q ss_pred --------eee-CCeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHH-HHHHHH
Q 025189 38 --------RSK-GGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR-QIIKAV 101 (256)
Q Consensus 38 --------~~~-~g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~-~~~~~l 101 (256)
... ++.++++|||||+..... .. ....+.+..++. ...|++|+|++.+. .....+. .+++.+
T Consensus 136 s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 136 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKIAKEV 213 (772)
T ss_dssp CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHHHHHHHHH
T ss_pred cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHHHHHHHHH
Confidence 111 133578999999987321 11 233334444443 68899999976654 3444554 566555
Q ss_pred HhhcCCcccccEEEEEecccCCCC
Q 025189 102 TGTFGKQIWRKSLLVLTHAQLCPP 125 (256)
Q Consensus 102 ~~~~g~~~~~~~ivv~Tk~D~~~~ 125 (256)
... ..|+++|+||+|+.+.
T Consensus 214 ~~~-----g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 214 DPQ-----GQRTIGVITKLDLMDE 232 (772)
T ss_dssp CTT-----CSSEEEEEECTTSSCT
T ss_pred Hhc-----CCCEEEEEeCcccCCc
Confidence 433 2799999999998643
No 152
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.24 E-value=8.6e-12 Score=108.93 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEE--EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTL--NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|++++... .....+++..........++..+ .+|||||.......... ++ ..+|+
T Consensus 161 ~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~ 229 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL-------SY--PQTDV 229 (332)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGG-------GC--TTCSE
T ss_pred ECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHH-------hc--cCCCE
Confidence 59999999999999997653 23334444444444455666654 59999998654322211 11 58999
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++++.. +......+++.+....+ ..|+++|+||+|+.
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 99998887522 21222245566666543 27999999999984
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.23 E-value=8.7e-11 Score=107.53 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+++|||||+|+|++........ ..+.|........+.++..+++|||
T Consensus 23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT 102 (439)
T 3j2k_7 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA 102 (439)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence 5999999999999997653211110 1234555555566778889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC------HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~------~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++|+|++.+..-+. ....+.+..+.. .+. +++++|+||+|+.
T Consensus 103 PGh~~-------f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 103 PGHKS-------FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVLINKMDDP 168 (439)
T ss_pred CChHH-------HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEEeecCCCc
Confidence 99743 233333322 479999999887753221 234444443333 231 4599999999984
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.23 E-value=1.6e-11 Score=113.67 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT------------------------------VNSFQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+|+|||||+|+|++..... .....+.|...........+..+.||||
T Consensus 39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDT 118 (483)
T 3p26_A 39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA 118 (483)
T ss_dssp ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEEC
Confidence 5999999999999998651100 0011234444555556677889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+. ...+...+ ..+|++|+|++++... ........+..+.. .+. +++++|+||+|+.
T Consensus 119 PG~~~f-------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIvviNK~Dl~ 184 (483)
T 3p26_A 119 PGHRDF-------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNV 184 (483)
T ss_dssp CCCGGG-------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEEEEECGGGG
T ss_pred CCcHHH-------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEEEEECcCcc
Confidence 998542 22222222 5899999998877532 22344444433333 332 5799999999985
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.22 E-value=6.8e-11 Score=96.57 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhh-cCC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLL-NKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~-~~~ 75 (256)
+|.+|||||||+|+|+|.. .+.++...+++..... ..+++ .+.++||||+.+.... ...+...+..++. ...
T Consensus 32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS 108 (210)
T ss_dssp EECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence 6999999999999999976 3333333344433222 22333 5689999998753211 1222223333332 257
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|.+++|+++.. ..+..+.++.+.+... + .+.++|.||+|..
T Consensus 109 ~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~~~v~nK~D~~ 150 (210)
T 1pui_A 109 LQGLVVLMDIRH-PLKDLDQQMIEWAVDS-N----IAVLVLLTKADKL 150 (210)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGS
T ss_pred ccEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEecccCC
Confidence 899999988765 3445455555544432 2 6888999999974
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.21 E-value=9.3e-11 Score=94.90 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEE--EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTL--NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 78 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (256)
+|.+|||||||+|.|.|....... .++.+.........++|..+ .+|||||..........+. ..+++
T Consensus 35 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~---------~~~~~ 104 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY---------RGAVG 104 (191)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH---------TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh---------hcCCE
Confidence 699999999999999997542221 22223333344556777654 5699999876443332222 47889
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+++|+++.+....+....+++.+.+.... ..++++|+||+|+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccc
Confidence 99997776421111112344444443222 36899999999984
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.19 E-value=5.3e-11 Score=108.78 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCcceeEEEEeeeCCeEEEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN----------SFQ----------------------SEALRPVMVSRSKGGFTLNII 48 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~g~~v~li 48 (256)
+|.+|+|||||+|+|++....... ... +.|..........++..+++|
T Consensus 30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii 109 (434)
T 1zun_B 30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA 109 (434)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence 599999999999999875421111 011 122223333445678899999
Q ss_pred eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||||..+. ...+...+ ..+|++|+|++++. .......+.+..+.. .+- +++++|+||+|+.
T Consensus 110 DtpGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~-~~~---~~iIvviNK~Dl~ 170 (434)
T 1zun_B 110 DTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMDLN 170 (434)
T ss_dssp ECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTTTT
T ss_pred ECCChHHH-------HHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEEcCcCC
Confidence 99997542 12222222 68999999988875 345555555554443 332 4799999999985
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.18 E-value=2.2e-11 Score=113.93 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|.+|+|||||+|+|++...+. ++. ..+.|.........+++..++||||||..+...
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~- 97 (528)
T 3tr5_A 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTE- 97 (528)
T ss_dssp EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCH-
T ss_pred ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHH-
Confidence 5899999999999997321110 000 012333344456678899999999999876432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
... .++ ..+|++|+|++... ........++..+...- .|+++|+||+|+.
T Consensus 98 --~~~----~~l--~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~-----iPiivviNK~Dl~ 147 (528)
T 3tr5_A 98 --DTY----RTL--TAVDSALMVIDAAK-GVEPRTIKLMEVCRLRH-----TPIMTFINKMDRD 147 (528)
T ss_dssp --HHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHHTTT-----CCEEEEEECTTSC
T ss_pred --HHH----HHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence 222 222 47999999987775 46667777776665442 7999999999984
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.17 E-value=1.2e-10 Score=107.82 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcc------cccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV------TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~------~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (256)
+|..++|||||+|+|++.... ......+.|.........+++..+++|||||.. ++...+...+ .
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~~~~~~--~ 95 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D 95 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHHHHHHH--h
Confidence 589999999999999997611 111222334444334456688999999999963 3334443333 5
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+|++|+|++++. .......+.+..+.. .+ .+.++|+||+|+.
T Consensus 96 ~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 96 IIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNA 138 (482)
T ss_dssp SCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSS
T ss_pred hCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence 8999999988765 345566666655544 33 5669999999985
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.15 E-value=9.3e-11 Score=111.48 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+|+|||||+|+|++........ ..+.|...........+..++||||
T Consensus 173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT 252 (611)
T 3izq_1 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA 252 (611)
T ss_dssp ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence 5999999999999999864321110 1234444444556677889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++|+|++++... ........+..+.. .|. +++++|+||+|+.
T Consensus 253 PG~e~-------f~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~iIVVvNKiDl~ 318 (611)
T 3izq_1 253 PGHRD-------FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNV 318 (611)
T ss_dssp CSSSC-------HHHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEEEEEEECTTTT
T ss_pred CCCcc-------cHHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeEEEEEeccccc
Confidence 99854 222222222 5899999997776310 12233333333332 232 5699999999985
No 161
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.14 E-value=1.6e-10 Score=108.16 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEE------Eee----eCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMV------SRS----KGGFTLNIIDTPGLVEAGYVNYQALELIKG 69 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~------~~~----~~g~~v~liDTPG~~~~~~~~~~~~~~i~~ 69 (256)
+|.+|||||||+|++++.... ....++.. ..... ... ..+..+.+|||||..........++
T Consensus 47 vG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l----- 119 (535)
T 3dpu_A 47 IGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM----- 119 (535)
T ss_dssp ESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH-----
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc-----
Confidence 699999999999999997632 11111111 11111 111 2267899999999765544433332
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189 70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 127 (256)
Q Consensus 70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~ 127 (256)
.++|++++|++++. . +....+++.+.+..+ + .|+++|+||+|+....+
T Consensus 120 ----~~~d~ii~V~D~s~--~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 120 ----TRSSVYMLLLDSRT--D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYN 167 (535)
T ss_dssp ----HSSEEEEEEECGGG--G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCC
T ss_pred ----cCCcEEEEEEeCCC--c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccc
Confidence 37999999976653 2 455667777777643 2 79999999999864433
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.13 E-value=5e-12 Score=118.13 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 79 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v 79 (256)
+|.+|+|||||+|+|.+..... ...++.|.....+.... ++..+++|||||..+.......+ ...+|++
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~---------~~~aD~v 79 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARG---------TQVTDIV 79 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSS---------SBSBSSC
T ss_pred ECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHH---------HccCCEE
Confidence 5999999999999999876432 23344455444444444 56789999999986644322211 1478999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
++|+++++ .........+..+... + .|+++|+||+|+.+
T Consensus 80 ILVVDa~d-g~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~ 118 (537)
T 3izy_P 80 ILVVAADD-GVMKQTVESIQHAKDA---H--VPIVLAINKCDKAE 118 (537)
T ss_dssp EEECBSSS-CCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTT
T ss_pred EEEEECCC-CccHHHHHHHHHHHHc---C--CcEEEEEecccccc
Confidence 99987775 4556666666555543 2 68999999999853
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.11 E-value=1.1e-10 Score=105.61 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCC-------ccc---ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGER-------VVT---VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL 64 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-------~~~---~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~ 64 (256)
+|.+|+|||||+|+|++.. .+. ..+ ..+.|...........+..+++|||||..+. .
T Consensus 17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-------~ 89 (405)
T 2c78_A 17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-------I 89 (405)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-------H
T ss_pred EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-------H
Confidence 5999999999999999731 000 000 1123334444445567789999999998642 2
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 65 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 65 ~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
..+...+ ..+|++|+|++.+. .........+..+... + .+ +++|+||+|+.
T Consensus 90 ~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 90 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 2222222 58999999988775 3456666666655543 2 45 88999999985
No 164
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.7e-10 Score=104.88 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-----CCCcceeEEEEe--eeCC--eEEEEEeCCCCCCCCcCc---HHHHHH--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF-----QSEALRPVMVSR--SKGG--FTLNIIDTPGLVEAGYVN---YQALEL-- 66 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~-----~~~t~~~~~~~~--~~~g--~~v~liDTPG~~~~~~~~---~~~~~~-- 66 (256)
+|++|+|||||+|.|+|......+.. ...|........ ...+ ..+++|||||++...... ..+...
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~ 116 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 116 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence 69999999999999999764222210 011111111111 1223 268999999998642110 111111
Q ss_pred --HHHh-----------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 67 --IKGF-----------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 67 --i~~~-----------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+..+ +..+.+|++||++......++..+..+++.+.. ..++|+|+||+|+.
T Consensus 117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 1111 123557788888443323588888777776643 27899999999985
No 165
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.09 E-value=1.5e-10 Score=111.50 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----------ccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT-----------VNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~-----------~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+|+|||||+|+|++..... +.++ .+.|.........+++..+++|||||..+.. .+.
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~ 92 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT---VEV 92 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC---HHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH---HHH
Confidence 5999999999999999421100 1110 1223333344567788999999999997643 233
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++|+|++... .....+...++.+.+. ..++++|+||+|+.
T Consensus 93 ~~~l------~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 93 ERSL------RVLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKL 140 (693)
T ss_dssp HHHH------HHCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred HHHH------HHCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 3333 36899999988765 4666777777766553 27899999999985
No 166
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.09 E-value=2.8e-10 Score=99.95 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID 77 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d 77 (256)
+|.+||||||+++.+++.-..........|......... ...++.||||||..+.... ...+. ++++
T Consensus 5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yy---------r~a~ 74 (331)
T 3r7w_B 5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLF---------KSVG 74 (331)
T ss_dssp ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHH---------TTCS
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhc---------cCCC
Confidence 699999999999998875321111111112211111111 2468999999999876321 12222 6899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHhh--cCCcccccEEEEEecccCC
Q 025189 78 VLLYADRLDAYRVDDLDRQIIKAVTGT--FGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~--~g~~~~~~~ivv~Tk~D~~ 123 (256)
++++|+++++. +.+.-..+.+.+... ...+ .++++|.||+|+.
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~ 119 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGL 119 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSS
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccC
Confidence 99999887763 444433332323221 1223 6899999999985
No 167
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.08 E-value=2e-10 Score=103.95 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcc---------eeEE----------EEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL---------RPVM----------VSRSKGGFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~---------~~~~----------~~~~~~g~~v~liDTPG~~~~~~~~~ 61 (256)
+|.+|+|||||+|+|++........+...+. .... .......+.+.+|||||..+
T Consensus 14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~------ 87 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV------ 87 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG------
T ss_pred ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH------
Confidence 5999999999999999853211110000000 0000 00011226889999999642
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+...+...+ ..+|++++|++.+...........+..+... +. +|+++|+||+|+.
T Consensus 88 -~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~ 142 (403)
T 3sjy_A 88 -LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV 142 (403)
T ss_dssp -GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred -HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence 222232222 5899999998887633255556666555443 32 5899999999985
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.07 E-value=2.2e-11 Score=112.91 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+++|||||+|+|++..+. .+...+.|.....+...+++..+++|||||..+........ ...+|+++
T Consensus 10 vGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~---------~~~aD~aI 79 (501)
T 1zo1_I 10 MGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG---------AQATDIVV 79 (501)
T ss_dssp EESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSS---------SBSCSSEE
T ss_pred ECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHH---------HhhCCEEE
Confidence 589999999999999975432 22223344444344456678889999999987654322111 14789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+|+++++. ........+..+... + .|+++++||+|+.
T Consensus 80 LVVda~~g-~~~qT~e~l~~~~~~-~----vPiIVviNKiDl~ 116 (501)
T 1zo1_I 80 LVVAADDG-VMPQTIEAIQHAKAA-Q----VPVVVAVNKIDKP 116 (501)
T ss_dssp EEEETTTB-SCTTTHHHHHHHHHT-T----CCEEEEEECSSSS
T ss_pred EEeecccC-ccHHHHHHHHHHHhc-C----ceEEEEEEecccc
Confidence 99888763 333444444444332 2 6899999999985
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.07 E-value=2.6e-10 Score=106.63 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|.+|+|||||+|+|++..... +.+ ..+.|.........+++..+++|||||..+..
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~-- 96 (529)
T 2h5e_A 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFS-- 96 (529)
T ss_dssp EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCC--
T ss_pred ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHH--
Confidence 5899999999999999642111 000 01112222233456788999999999997643
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
... ..++ ..+|++|+|++... ........+++.+... + .|+++|+||+|+.
T Consensus 97 -~~~----~~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~ 147 (529)
T 2h5e_A 97 -EDT----YRTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR---D--TPILTFMNKLDRD 147 (529)
T ss_dssp -HHH----HHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT---T--CCEEEEEECTTSC
T ss_pred -HHH----HHHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc---C--CCEEEEEcCcCCc
Confidence 122 2222 58999999988765 3455555555444322 2 6899999999985
No 170
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=6.2e-12 Score=112.70 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcC
Q 025189 1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNK 74 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~ 74 (256)
+|.+|+|||||+|+|++. ..+.++..+++|........ . ..+.++||||+.+.....+. ..+.++.++...
T Consensus 168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~ 244 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKR 244 (369)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSS
T ss_pred EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccc
Confidence 599999999999999997 45567778888876655432 2 23689999999876422211 112233333446
Q ss_pred CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++|.++|+++.+..-+.. ....++ ...+. ..++++++||+|..
T Consensus 245 ~i~~~~~~l~~~~~~~~g-~l~~l~---~l~~~--~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 245 EIHPRVYQLNEGQTLFFG-GLARLD---YIKGG--RRSFVCYMANELTV 287 (369)
T ss_dssp CCCCEEEEECTTEEEEET-TTEEEE---EEESS--SEEEEEEECTTSCE
T ss_pred ccCceEEEEcCCceEEEC-CEEEEE---EccCC--CceEEEEecCCccc
Confidence 899999996553211111 111111 11122 26899999999975
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.05 E-value=1.1e-10 Score=107.38 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHhCCC-ccc-----------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGER-VVT-----------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~-~~~-----------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+++|||||+|+|++.. ... +.+ ..+.|..........++..+++|||
T Consensus 13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDt 92 (458)
T 1f60_A 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA 92 (458)
T ss_dssp EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEEC
Confidence 5899999999999998641 000 000 0223433333455667889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH-------HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-------LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~-------~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+ +...+...+ ..+|++|+|++++.. ..+ .....+..+. ..+- +++++|+||+|+.
T Consensus 93 PGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g-~~~~sf~~~~qt~~~~~~~~-~~~v---~~iivviNK~Dl~ 158 (458)
T 1f60_A 93 PGHRD-------FIKNMITGT--SQADCAILIIAGGVG-EFEAGISKDGQTREHALLAF-TLGV---RQLIVAVNKMDSV 158 (458)
T ss_dssp CCCTT-------HHHHHHHSS--SCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHH-HTTC---CEEEEEEECGGGG
T ss_pred CCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcC-ccccccCcchhHHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence 99753 233333332 689999999776631 111 2333333222 2221 4599999999985
No 172
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=6.8e-10 Score=100.79 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCc----CcHHHHHHHHHhhhcCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGY----VNYQALELIKGFLLNKT 75 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~----~~~~~~~~i~~~l~~~~ 75 (256)
+|.+|||||||+|+|.+... .++.++.+|..+......+++ ..++++||||+.+... ....+++.+ ..
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~------er 235 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR 235 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred ECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH------HH
Confidence 69999999999999999854 455566666666666666665 7899999999976421 223333333 47
Q ss_pred CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
++.+|++++++ .+....-....+.+..+...-..+|.++|+||+|..
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 89999998886 221122223334443331111137899999999974
No 173
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=7.5e-12 Score=112.13 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCC------cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhc
Q 025189 1 MGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLN 73 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~ 73 (256)
+|.+|+|||||+|+|++.. .+.++..+++|.......... .+.++||||+.+.....+ ...+.++.++..
T Consensus 166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~ 242 (368)
T 3h2y_A 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLKLITPT 242 (368)
T ss_dssp EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHHHHSCS
T ss_pred ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHHHhccc
Confidence 5999999999999999963 334667777777665543222 268999999988652221 112344444445
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..++.++|+++.+..-+.. ....++. ..+. ..++++++||+|..
T Consensus 243 ~~i~~~~~~l~~~~~~~~g-~l~~~d~---l~~~--~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 243 KEIKPMVFQLNEEQTLFFS-GLARFDY---VSGG--RRAFTCHFSNRLTI 286 (368)
T ss_dssp SCCCCEEEEECTTEEEEET-TTEEEEE---EESS--SEEEEEEECTTSCE
T ss_pred cccCceEEEEcCCCEEEEc-ceEEEEE---ecCC--CceEEEEecCcccc
Confidence 6889999995543211111 1111111 1122 26899999999975
No 174
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.03 E-value=7.1e-10 Score=100.13 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccc----------cc-----CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~----------~~-----~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..|+|||||+|+|++..... .. ...+.|..........++..+++|||||..+ +..
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~-------f~~ 81 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD-------YVK 81 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-------HHH
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-------HHH
Confidence 5999999999999999741100 00 0112233333333445678999999999742 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++++|++.+. .......+.+..+... + .+ +++|+||+|+.
T Consensus 82 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV 132 (397)
T ss_dssp HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred HHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence 443333 58999999988875 3445555555554432 2 45 78999999985
No 175
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.01 E-value=4.7e-10 Score=102.49 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHhCCC--ccc------------c----------cC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGER--VVT------------V----------NS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~--~~~------------~----------~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..|+|||||+|+|++.. ... . .+ ..+.|...........+..+++|||
T Consensus 12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt 91 (435)
T 1jny_A 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA 91 (435)
T ss_dssp EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence 5899999999999998641 100 0 00 1223444444455667889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+. ...+...+ ..+|++++|+++++..+ .....+.+..+.. .+- +++++|+||+|+.
T Consensus 92 pG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~ 157 (435)
T 1jny_A 92 PGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAVNKMDLT 157 (435)
T ss_dssp SSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEEECGGGS
T ss_pred CCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEEcccCC
Confidence 998652 22333333 68999999988775211 1123333332222 231 4789999999985
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.01 E-value=5.3e-10 Score=100.11 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL 80 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL 80 (256)
+|.+++|||||+|+|+.. +.|........+.++..+++|||||..+.. ......+ ..+|+++
T Consensus 27 iG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~---~~~~~~~------~~aD~ai 88 (370)
T 2elf_A 27 IGTEKSGRTSLAANLGKK---------GTSSDITMYNNDKEGRNMVFVDAHSYPKTL---KSLITAL------NISDIAV 88 (370)
T ss_dssp EESTTSSHHHHHHTTSEE---------EEESSSEEEEECSSSSEEEEEECTTTTTCH---HHHHHHH------HTCSEEE
T ss_pred ECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEecCCeEEEEEECCChHHHH---HHHHHHH------HHCCEEE
Confidence 589999999999999911 223334445566778899999999986531 1222222 4899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE-EEEEe-cccC
Q 025189 81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLT-HAQL 122 (256)
Q Consensus 81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~-ivv~T-k~D~ 122 (256)
+|++ +. ....+..+.+..+... + .+. ++++| |+|+
T Consensus 89 lVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 89 LCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp EEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred EEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 9977 43 3455556665555433 3 344 89999 9997
No 177
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.01 E-value=2.2e-10 Score=102.06 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCc----C
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY----V 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~----~ 59 (256)
+|.+|||||||+|+|++.. +.+++++.+|..+......+++ ..+.+|||||+..+.. .
T Consensus 8 VG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl 86 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL 86 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence 6999999999999999987 4667777777666544444444 5789999999986531 1
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDA 87 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~ 87 (256)
...++..+ +++|++++|++..+
T Consensus 87 ~~~fl~~i------r~ad~il~VvD~~~ 108 (363)
T 1jal_A 87 GNKFLANI------RETDAIGHVVRCFE 108 (363)
T ss_dssp TCCHHHHH------HTCSEEEEEEECSC
T ss_pred HHHHHHHH------HhcCeEEEEEecCC
Confidence 12334444 48999999988764
No 178
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.01 E-value=2.9e-09 Score=96.44 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--CCCCCcceeEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSRSK---------------G--------GFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~v~liDTPG~~~ 55 (256)
+|..++|||||+|+|+|....... ...+.|.........+ . ...+++|||||..
T Consensus 16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~- 94 (410)
T 1kk1_A 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE- 94 (410)
T ss_dssp ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH-
T ss_pred ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH-
Confidence 599999999999999986432111 1122233322211111 1 1679999999953
Q ss_pred CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+...+...+ ..+|++|+|+++++.-......+.+..+... +. +++++|+||+|+.
T Consensus 95 ------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 95 ------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV 150 (410)
T ss_dssp ------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred ------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence 3333333322 4679999998877522245555555544433 32 5899999999985
No 179
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=4.4e-09 Score=95.21 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---------------G--------GFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~---------------~--------g~~v~liDTPG~~~ 55 (256)
+|..++|||||+|+|+|........ ..+.|.........+ + ...+++|||||..
T Consensus 14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~- 92 (408)
T 1s0u_A 14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE- 92 (408)
T ss_dssp ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH-
T ss_pred EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH-
Confidence 5999999999999999864321111 122233222111111 1 1679999999952
Q ss_pred CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.+...+... ...+|++|+|++++..-......+.+..+. .++. +++++|+||+|+.+
T Consensus 93 ------~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 93 ------TLMATMLSG--ASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp ------HHHHHHHTT--CSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSC
T ss_pred ------HHHHHHHHh--HhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCC
Confidence 333333322 246799999988775222455555555443 3332 58999999999863
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.99 E-value=7.4e-10 Score=106.75 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-----T------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+|+|||||+|+|+..... . +.+ ....|.........+++..+++|||||..+.. ...
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~ 94 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT---IEV 94 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH---HHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH---HHH
Confidence 589999999999999832100 0 000 11223333344566788999999999996532 223
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++|+|++... .........+..+.+. ..+.++|+||+|+.
T Consensus 95 ~~~l------~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 142 (691)
T 1dar_A 95 ERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKT 142 (691)
T ss_dssp HHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred HHHH------HHCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 3333 36899999988775 4556666666655543 27899999999985
No 181
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=2.1e-09 Score=92.16 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-------CCCCcceeEE-EEeeeCC--eEEEEEeCCCCCCCCcC---cHHHHHH-
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVM-VSRSKGG--FTLNIIDTPGLVEAGYV---NYQALEL- 66 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~-~~~~~~g--~~v~liDTPG~~~~~~~---~~~~~~~- 66 (256)
+|++|+|||||+|.|+|......+. ...+...... +.....+ ..++++|+||++..... .+...+.
T Consensus 8 vG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~ 87 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYI 87 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHH
Confidence 6999999999999999964322221 1111111111 1111122 26799999999874221 1111111
Q ss_pred ---HHHh----hh--------cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 67 ---IKGF----LL--------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 67 ---i~~~----l~--------~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.... ++ ...+++.||+++-....++..|..+++.+.+. .++++|+||+|..
T Consensus 88 ~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 88 NEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 1111 11 12468888886544445888998888887654 6899999999985
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.97 E-value=2.8e-11 Score=114.65 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|.+|+|||||+|+|++........ ..+.|..........++..++||||
T Consensus 183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT 262 (592)
T 3mca_A 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA 262 (592)
T ss_dssp ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence 5999999999999997532111100 1233444444555667889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC----C--CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR----V--DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r----~--~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+........ + ..+|++|+|++++... + .......+..+.. .|- +++|+|+||+|+.
T Consensus 263 PGh~~f~~~~~~~---~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvviNKiDl~ 328 (592)
T 3mca_A 263 PGHRDFISGMIAG---A------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVSVNKLDLM 328 (592)
T ss_dssp ESSSEEEEECCC----------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEEEECGGGG
T ss_pred CChHHHHHHHHHH---H------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEeccccc
Confidence 9987542211111 1 4789999997776421 2 3344444444433 232 3599999999985
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.95 E-value=1.7e-09 Score=94.10 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC------CCccee--EEEEeeeC--CeEEEEEeCCCCCCCC-------cCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMVSRSKG--GFTLNIIDTPGLVEAG-------YVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~------~~t~~~--~~~~~~~~--g~~v~liDTPG~~~~~-------~~~~~~ 63 (256)
+|++|+|||||+|.|+|...+..+... ..|... ..+..... ...+++|||||+++.. ......
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l 103 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 103 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence 699999999999999997443322110 011111 11112222 2478999999996431 011100
Q ss_pred H----HHHHHh-------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 L----ELIKGF-------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~----~~i~~~-------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
. ..++.. +....++++||++......++..+.++++.+. .. .++++|+||+|+.
T Consensus 104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~--~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TT--SCEEEEECCGGGS
T ss_pred HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hc--CCEEEEEEeCCCC
Confidence 0 111111 11234577777755433347777755544432 22 5899999999985
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.93 E-value=3.8e-09 Score=102.00 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--c---c------cCC------CCCcceeEEEEeeeCC-------eEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--T---V------NSF------QSEALRPVMVSRSKGG-------FTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~---~------~~~------~~~t~~~~~~~~~~~g-------~~v~liDTPG~~~~ 56 (256)
+|..|+|||||+++|+..... . + .+. .+.|.........+++ ..++||||||..+.
T Consensus 16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df 95 (704)
T 2rdo_7 16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 95 (704)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence 699999999999999753210 0 0 000 1122222333445555 88999999998753
Q ss_pred CcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 57 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 57 ~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
. .+....+ ..+|++|+|++.+. .........++.+... ..+.++|+||+|+.
T Consensus 96 ~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 96 T---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRM 147 (704)
T ss_pred H---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcc
Confidence 2 1222222 47899999987765 3444445555544332 26899999999985
No 185
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.93 E-value=1.4e-09 Score=103.04 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcce--eEEEEee----------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--PVMVSRS----------------KGGFTLNIIDTPGLVEAGYVNYQ 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~----------------~~g~~v~liDTPG~~~~~~~~~~ 62 (256)
+|.+|+|||||+|+|++..+.... ..+.|.. ....... +....+++|||||..+.......
T Consensus 11 vGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r 89 (594)
T 1g7s_A 11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR 89 (594)
T ss_dssp ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred ECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHH
Confidence 699999999999999986432111 1112211 1111111 11225899999999775432211
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
. ...+|++++|+++++ .+.......++.+... ..|+++|+||+|+.
T Consensus 90 -------~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 90 -------G--GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRI 135 (594)
T ss_dssp -------S--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred -------H--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEecccccc
Confidence 1 146899999988876 3556666666665542 27899999999985
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.93 E-value=7e-10 Score=102.30 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT 50 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT 50 (256)
+|..++|||||+|+|++..... +.+ ..+.|..........++..+++|||
T Consensus 49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt 128 (467)
T 1r5b_A 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA 128 (467)
T ss_dssp EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence 5899999999999997421100 000 0122333333345567889999999
Q ss_pred CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC----C--HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV----D--DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~----~--~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
||..+.. ..+...+ ..+|++|+|++++...+ . ......+..+. ..|- +++++|+||+|+.
T Consensus 129 PGh~~f~-------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~v---p~iivviNK~Dl~ 194 (467)
T 1r5b_A 129 PGHKGYV-------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGI---NHLVVVINKMDEP 194 (467)
T ss_dssp CC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTC---SSEEEEEECTTST
T ss_pred CCcHHHH-------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCC---CEEEEEEECccCC
Confidence 9986432 2222222 58999999988775311 0 12333333322 2231 3499999999984
No 187
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.90 E-value=9.8e-10 Score=94.84 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ 62 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~ 62 (256)
+|.+|||||||+|+|+|...+.++..+++|...+... . +..+.++||||+..+...+.+
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCCCCHH
T ss_pred EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCCCCHH
Confidence 5999999999999999998878888877777654322 2 446899999999987766554
No 188
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=98.19 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcCcH--
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYVNY-- 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~~~-- 61 (256)
+|.+|||||||+|+|+|... .++.++.+|..+......+.+ ..+.+|||||+..+....+
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl 106 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL 106 (396)
T ss_dssp ECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence 69999999999999999875 667777777766655554443 3589999999987543211
Q ss_pred --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189 62 --QALELIKGFLLNKTIDVLLYADRLD 86 (256)
Q Consensus 62 --~~~~~i~~~l~~~~~d~vL~v~~~d 86 (256)
.++..+ ..+|++++|++..
T Consensus 107 g~~~l~~i------r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 107 GNAFLSHI------SACDGIFHLTRAF 127 (396)
T ss_dssp CCHHHHHH------HTSSSEEEEEEC-
T ss_pred HHHHHHHH------HhcCeEEEEEecC
Confidence 334444 4899999997765
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.87 E-value=2.3e-09 Score=105.42 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeC----------------CeEEEEEe
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------------GFTLNIID 49 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------------g~~v~liD 49 (256)
+|..|+|||||+|+|++......+.. .+.|.........+. +..++|||
T Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD 104 (842)
T 1n0u_A 25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID 104 (842)
T ss_dssp ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence 59999999999999997532111100 011221111222222 67899999
Q ss_pred CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
|||..+... +....+ ..+|++|+|++... .........+..+... + .+.++|+||+|+.
T Consensus 105 TPG~~df~~---~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~---~--~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SPGHVDFSS---EVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE---R--IKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCSSCH---HHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT---T--CEEEEEEECHHHH
T ss_pred CcCchhhHH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc---C--CCeEEEEECCCcc
Confidence 999987532 233333 47999999988775 4455555555444332 2 6889999999974
No 190
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.87 E-value=2.7e-09 Score=100.93 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------cCC------CCCcceeEEEEeee---C--CeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--------NSF------QSEALRPVMVSRSK---G--GFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--------~~~------~~~t~~~~~~~~~~---~--g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..|+|||||+|+|++...... .+. .+.|.........+ + +..+++|||||..+.. .
T Consensus 12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~---~ 88 (600)
T 2ywe_A 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS---Y 88 (600)
T ss_dssp ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH---H
T ss_pred ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH---H
Confidence 59999999999999986321100 000 01121111112222 2 2578899999997632 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+....+ ..+|++|+|++.+. .........+...... + .|+++|+||+|+.
T Consensus 89 ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~ 138 (600)
T 2ywe_A 89 EVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ---D--LVIIPVINKIDLP 138 (600)
T ss_dssp HHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT---T--CEEEEEEECTTST
T ss_pred HHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC---C--CCEEEEEeccCcc
Confidence 222222 47899999988775 3444444444433332 2 6899999999984
No 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=7.4e-09 Score=93.96 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cC-CCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCc-----------HHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--NS-FQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVN-----------YQAL 64 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--~~-~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~-----------~~~~ 64 (256)
+|++|+|||||+|.|+|...... .. .+..+.....+.....+. .++++|+||++...... ..+.
T Consensus 48 vG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~ 127 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHH
Confidence 69999999999999999753211 11 112222222222222232 68999999998642110 1111
Q ss_pred HHHHHhhh---------cCCCcEEEE-EEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 65 ELIKGFLL---------NKTIDVLLY-ADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 65 ~~i~~~l~---------~~~~d~vL~-v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+..... ...+|+++| +.+.. ..++..|..+++.|. . ..++|+|+||+|..
T Consensus 128 ~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~-~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG-HSLKSLDLVTMKKLD----S--KVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHHHHHHHHHTC----S--CSEEEEEESCGGGS
T ss_pred HHHHHHHhhhhhhcccccccccEEEEEEeCCC-CCCCHHHHHHHHHHh----h--CCCEEEEEcchhcc
Confidence 11222110 112455554 43322 247888887777664 1 27999999999975
No 192
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.86 E-value=4e-09 Score=94.25 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---------------------CCeEEEEEeCCCCCCCCc-
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---------------------GGFTLNIIDTPGLVEAGY- 58 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~v~liDTPG~~~~~~- 58 (256)
+|.+|||||||+|+|++.. +.+++++.+|..+......+ .+..+.+|||||+..+..
T Consensus 7 VG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 85 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK 85 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred ECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence 6999999999999999875 34566666665554433332 245799999999987532
Q ss_pred ---CcHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189 59 ---VNYQALELIKGFLLNKTIDVLLYADRLDA 87 (256)
Q Consensus 59 ---~~~~~~~~i~~~l~~~~~d~vL~v~~~d~ 87 (256)
....++..++ .+|++++|++..+
T Consensus 86 ~~~lg~~fl~~ir------~ad~ii~VvD~~~ 111 (368)
T 2dby_A 86 GEGLGNQFLAHIR------EVAAIAHVLRCFP 111 (368)
T ss_dssp SSCTTHHHHHHHH------TCSEEEEEEECCC
T ss_pred cchHHHHHHHHHH------hCCEEEEEEECCC
Confidence 2345555554 8999999988764
No 193
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.85 E-value=2.3e-09 Score=101.55 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------cCC------CCCcceeEEEEeeeC-----CeEEEEEeCCCCCCCCcCcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTV--------NSF------QSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAGYVNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~--------~~~------~~~t~~~~~~~~~~~-----g~~v~liDTPG~~~~~~~~~ 61 (256)
+|..|+|||||+++|++...... .+. .+.|.........+. +..+++|||||..+.. .
T Consensus 10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~---~ 86 (599)
T 3cb4_D 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS---Y 86 (599)
T ss_dssp ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH---H
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH---H
Confidence 59999999999999986321110 000 112222222233332 3678999999986532 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
+....+ ..+|++++|++.++ .........+...... + .|+++|+||+|+.
T Consensus 87 ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~ 136 (599)
T 3cb4_D 87 EVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM---D--LEVVPVLNKIDLP 136 (599)
T ss_dssp HHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT---T--CEEEEEEECTTST
T ss_pred HHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC---C--CCEEEeeeccCcc
Confidence 222222 36899999988775 3334444444333322 2 6899999999985
No 194
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=2.1e-09 Score=96.80 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcC----
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYV---- 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~---- 59 (256)
+|.+|||||||+|+|+|...+.++.++.+|..+......+.| ..+.++||||+......
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L 105 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL 105 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence 699999999999999998876788888888888777666665 46899999999875332
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDA 87 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~ 87 (256)
...++..+ ..+|++++|++..+
T Consensus 106 ~~~fl~~i------r~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 106 GNAFLSHV------RAVDAIYQVVRAFD 127 (392)
T ss_dssp CHHHHHHH------TTCSEEEEEEECCC
T ss_pred HHHHHHHH------HHHHHHHHHHhccc
Confidence 23444444 48999999987753
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=96.06 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=35.2
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.+|..+.++||||+.... . .+. ..+|++++|++.... . +.+.++. ..+ ..+.++|+||
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~----~l~-----~~~d~vl~V~d~~~~---~-~~~~i~~--~il----~~~~ivVlNK 221 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---F----AVA-----DMVDMFVLLLPPAGG---D-ELQGIKR--GII----EMADLVAVTK 221 (349)
T ss_dssp HTTCSEEEEECCCC--CH---H----HHH-----TTCSEEEEEECCC------------------C----CSCSEEEECC
T ss_pred cCCCCEEEEECCCcchhh---h----hHH-----hhCCEEEEEEcCCcc---h-hHHHhHH--HHH----hcCCEEEEee
Confidence 367889999999986431 1 122 589999999655431 1 1111111 122 1477999999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
+|+.
T Consensus 222 ~Dl~ 225 (349)
T 2www_A 222 SDGD 225 (349)
T ss_dssp CSGG
T ss_pred ecCC
Confidence 9984
No 196
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.78 E-value=1e-08 Score=102.52 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cc---cc------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERV------VT---VN------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 65 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~------~~---~~------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~ 65 (256)
+|..++|||||+|+|++... +. .. ...+.|...........+..+++|||||..+ +..
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-------F~~ 374 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-------YVK 374 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-------HHH
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-------HHH
Confidence 58999999999999997411 00 00 0111222222223345678999999999753 333
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
.+...+ ..+|++|+|+++++. ...+..+.+..+... + .| +++|+||+|+.
T Consensus 375 ~mi~ga--s~AD~aILVVDAtdG-v~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv 425 (1289)
T 3avx_A 375 NMITGA--AQMDGAILVVAATDG-PMPQTREHILLGRQV-G----VPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHHTS--CCCSEEEEEEETTTC-SCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred HHHHHH--hhCCEEEEEEcCCcc-CcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence 333332 589999999888763 334455555555443 3 45 78999999985
No 197
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.78 E-value=1.3e-08 Score=97.67 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--ccc---------C------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV--TVN---------S------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~--~~~---------~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|.+|+|||||+++|++.... ..+ . ..+.|...........+..+++|||||..+.. ...
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~---~~~ 91 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV---GEI 91 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH---HHH
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH---HHH
Confidence 589999999999999953211 000 0 01223344455566778899999999986532 223
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ ..+|++++|++... ........+++.+... + .+.++|+||+|+.
T Consensus 92 ~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred HHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 3233 36899999988664 4666677777766553 2 7899999999984
No 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.71 E-value=1.6e-08 Score=95.30 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-cccCC-CCCcceeEEEEe---eeCCeEEEEEeCCCCCCCCc-Cc--HHHHHHHHHhhh
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-TVNSF-QSEALRPVMVSR---SKGGFTLNIIDTPGLVEAGY-VN--YQALELIKGFLL 72 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-~~~~~-~~~t~~~~~~~~---~~~g~~v~liDTPG~~~~~~-~~--~~~~~~i~~~l~ 72 (256)
+|.+|||||||+|+|+|.... .++.. .++|.....+.. ...+..+.++||||+.+... .. ...+-.+...++
T Consensus 44 vG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~lls 123 (592)
T 1f5n_A 44 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLS 123 (592)
T ss_dssp EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhc
Confidence 699999999999999998753 22221 133333322211 23578899999999997543 11 111112222222
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh
Q 025189 73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT 104 (256)
Q Consensus 73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~ 104 (256)
++++|- ... .+++.+...+..+.+.
T Consensus 124 ----s~lv~n--~~~-~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 124 ----STFVYN--SIG-TINQQAMDQLYYVTEL 148 (592)
T ss_dssp ----SEEEEE--EES-CSSHHHHHTTHHHHTH
T ss_pred ----CeEEEE--CCC-CccHHHHHHHHHHHHH
Confidence 233333 332 5788888777665443
No 199
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.66 E-value=2.3e-09 Score=90.94 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCCC--CCCHHHHHHHHHHHhhc-CCcccccEEEEEecccCC
Q 025189 75 TIDVLLYADRLDAY--RVDDLDRQIIKAVTGTF-GKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 75 ~~d~vL~v~~~d~~--r~~~~~~~~~~~l~~~~-g~~~~~~~ivv~Tk~D~~ 123 (256)
++|++++|+++++. ...+.-..++..+.+.. ..+ .|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccc
Confidence 48999999988763 22222334555555442 122 7999999999983
No 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=7.1e-09 Score=88.51 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcH
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNY 61 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~ 61 (256)
+|.+|+|||||+|+|+|...+.++..+++|...+... . +..+.+|||||+.+... .+.
T Consensus 105 vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~ 163 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGVKILDTPGILYKNIFSED 163 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSCEEESSCEECCCCCCSHH
T ss_pred eCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCEEEEECCCcccCcCCCCh
Confidence 5999999999999999988766777666666554322 1 34678999999998765 443
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.64 E-value=2e-08 Score=88.86 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=37.1
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.++..+.+|||||+.+.. . .+. ..+|++|+|++.+.. . +.+.++. ... ..+.++|+||
T Consensus 146 ~~~~~i~liDTpG~~~~~---~----~~~-----~~aD~vl~Vvd~~~~--~--~~~~l~~--~~~----~~p~ivv~NK 203 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSE---T----EVA-----RMVDCFISLQIAGGG--D--DLQGIKK--GLM----EVADLIVINK 203 (341)
T ss_dssp HTTCSEEEEEEECCTTHH---H----HHH-----TTCSEEEEEECC----------CCCCH--HHH----HHCSEEEECC
T ss_pred ccCCCEEEEeCCCccchH---H----HHH-----HhCCEEEEEEeCCcc--H--HHHHHHH--hhh----cccCEEEEEC
Confidence 457889999999997531 1 121 589999999665421 1 1111110 001 1578999999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
+|+.
T Consensus 204 ~Dl~ 207 (341)
T 2p67_A 204 DDGD 207 (341)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9984
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.61 E-value=3.1e-08 Score=88.07 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=38.3
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
..+..+.||||||++.. .. .+. ..+|++|+|++.... +....+ ... -.-.+.++|+||
T Consensus 169 ~~~~~~iiiDTpGi~~~---~~----~~~-----~~aD~vl~V~d~~~~---~~~~~l----~~~---~~~~p~ivVlNK 226 (355)
T 3p32_A 169 AAGFDVILIETVGVGQS---EV----AVA-----NMVDTFVLLTLARTG---DQLQGI----KKG---VLELADIVVVNK 226 (355)
T ss_dssp HTTCCEEEEEECSCSSH---HH----HHH-----TTCSEEEEEEESSTT---CTTTTC----CTT---SGGGCSEEEEEC
T ss_pred hCCCCEEEEeCCCCCcH---HH----HHH-----HhCCEEEEEECCCCC---ccHHHH----HHh---HhhcCCEEEEEC
Confidence 35788999999998642 11 111 589999999765431 111111 110 012588999999
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
+|+.
T Consensus 227 ~Dl~ 230 (355)
T 3p32_A 227 ADGE 230 (355)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 9984
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.59 E-value=1.9e-08 Score=88.85 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=36.3
Q ss_pred eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189 40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 119 (256)
Q Consensus 40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk 119 (256)
.+|.++.++||||+.+.. . .+. ..+|++++|++... -+ ....+.+.+.+ .+.++|+||
T Consensus 145 ~~~~~~iliDT~Gi~~~~---~----~v~-----~~~d~vl~v~d~~~--~~-~~~~i~~~i~~-------~~~ivvlNK 202 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE---T----AVA-----DLTDFFLVLMLPGA--GD-ELQGIKKGIFE-------LADMIAVNK 202 (337)
T ss_dssp HTTCCEEEEEECSSSSCH---H----HHH-----TTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEEC
T ss_pred cCCCCEEEEECCCCCcch---h----hHH-----hhCCEEEEEEcCCC--cc-cHHHHHHHHhc-------cccEEEEEc
Confidence 368899999999997642 1 122 58999999965432 11 10101111111 355888899
Q ss_pred ccCC
Q 025189 120 AQLC 123 (256)
Q Consensus 120 ~D~~ 123 (256)
+|+.
T Consensus 203 ~Dl~ 206 (337)
T 2qm8_A 203 ADDG 206 (337)
T ss_dssp CSTT
T ss_pred hhcc
Confidence 9974
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.57 E-value=1.7e-07 Score=84.87 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=65.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC----CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 76 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (256)
+|++|+|||||+|.|+|......+.. ..++.....++.. ....++++|+||++.....-.++++.+. + .+.
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~--L--~~~ 149 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK--F--YEY 149 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT--G--GGC
T ss_pred ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcC--C--Ccc
Confidence 59999999999999999532111111 1122222222221 1125799999999754333334443322 1 234
Q ss_pred cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
+.+++ ++..+.......+...+...- +++++|+|+.|.
T Consensus 150 ~~~~~---lS~G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdl 187 (413)
T 1tq4_A 150 DFFII---ISATRFKKNDIDIAKAISMMK-----KEFYFVRTKVDS 187 (413)
T ss_dssp SEEEE---EESSCCCHHHHHHHHHHHHTT-----CEEEEEECCHHH
T ss_pred CCeEE---eCCCCccHHHHHHHHHHHhcC-----CCeEEEEecCcc
Confidence 55554 344356677788888887642 799999999975
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.55 E-value=2.4e-07 Score=85.95 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHh------CCCcccccCC--CCCc---------c--eeEEEE----------------eeeCCeEE
Q 025189 1 MGKGGVGKSSTVNSVI------GERVVTVNSF--QSEA---------L--RPVMVS----------------RSKGGFTL 45 (256)
Q Consensus 1 vG~tG~GKSSliN~l~------g~~~~~~~~~--~~~t---------~--~~~~~~----------------~~~~g~~v 45 (256)
+|.+||||||++|.|. |.++..++.- .+.. . -+.... ....+..+
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~Dv 186 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEI 186 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCE
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 5899999999999999 7766544431 1100 0 011110 01267789
Q ss_pred EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189 46 NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 123 (256)
Q Consensus 46 ~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~ 123 (256)
.||||||..... .....++......-.+|.+++|++.... . .....++.+.+. .+ ..+|+||+|..
T Consensus 187 vIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g-~--~~~~~a~~~~~~------~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 187 IIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG-Q--ACEAQAKAFKDK------VDVASVIVTKLDGH 253 (504)
T ss_dssp EEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC-T--THHHHHHHHHHH------HCCCCEEEECTTSC
T ss_pred EEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc-c--cHHHHHHHHHhh------cCceEEEEeCCccc
Confidence 999999987532 2222333222111278999999665532 2 233444444432 35 48999999975
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.54 E-value=3.7e-07 Score=85.63 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcc---------------cccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV---------------TVNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~---------------~~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~ 59 (256)
+|..++|||||.-+|+-..-+ .+.++ .+.|-........+++..++||||||.-|..
T Consensus 37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~-- 114 (548)
T 3vqt_A 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS-- 114 (548)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGGCS--
T ss_pred EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHH--
Confidence 577899999999999732110 01111 1122233345678899999999999998764
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
.+....+ .-+|..|+|++... -.......+++...+.- .|.++++||.|..
T Consensus 115 -~Ev~raL------~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 115 -EDTYRVL------TAVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDRE 165 (548)
T ss_dssp -HHHHHHH------HSCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTSC
T ss_pred -HHHHHHH------HhcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccch
Confidence 2333344 37899999976664 36667777777666553 7899999999973
No 207
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.44 E-value=1.1e-06 Score=83.51 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=39.3
Q ss_pred EEEEEeCCCCCCC--CcCc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189 44 TLNIIDTPGLVEA--GYVN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117 (256)
Q Consensus 44 ~v~liDTPG~~~~--~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~ 117 (256)
.+.++|.||++.. +..+ ..+.+.++.++. .+..+++++...+..-.... .++.+...-... .++|+|+
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~-~~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g--~rtI~Vl 221 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ-RQETISLVVVPSNVDIATTE---ALSMAQEVDPEG--DRTIGIL 221 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTT-SSSCCEEEEEESSSCTTTCH---HHHHHHHHCSSC--CSEEEEE
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCCCceEEEeccchhccHH---HHHHHHHHhhcC--CceEEEe
Confidence 5899999998863 2222 244445554443 23455666655443222223 333333432222 7899999
Q ss_pred ecccCCC
Q 025189 118 THAQLCP 124 (256)
Q Consensus 118 Tk~D~~~ 124 (256)
||+|+.+
T Consensus 222 TK~Dlv~ 228 (608)
T 3szr_A 222 TKPDLVD 228 (608)
T ss_dssp ECGGGSS
T ss_pred cchhhcC
Confidence 9999863
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.40 E-value=5.5e-08 Score=82.03 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHh-----CCCccccc
Q 025189 1 MGKGGVGKSSTVNSVI-----GERVVTVN 24 (256)
Q Consensus 1 vG~tG~GKSSliN~l~-----g~~~~~~~ 24 (256)
+|+.||||||++|.|. |.+++.+.
T Consensus 20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp ECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999999999998 77765554
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=7.5e-07 Score=81.16 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||||.... +.....+++.......+|.+++|++... ........+.+.+.. ....+|+||.
T Consensus 181 ~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEECC
T ss_pred CCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEECC
Confidence 4578899999998643 3444444544433347899999955442 223334444444443 5678999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 250 D~~ 252 (443)
T 3dm5_A 250 DGS 252 (443)
T ss_dssp SSC
T ss_pred CCc
Confidence 974
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.23 E-value=4.5e-07 Score=86.56 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----c------ccCCC------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-----T------VNSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 63 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-----~------~~~~~------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~ 63 (256)
+|..++|||||..+|+-..-. . +.++. +.|-........+++..++|+||||.-|.. .+.
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~---~Ev 84 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL---AEV 84 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH---HHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH---HHH
Confidence 477899999999999732110 0 11110 123333344567889999999999998753 222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
...+ .-+|..++|++... -...+....++...+.- .|.++++||.|..
T Consensus 85 ~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~ 132 (638)
T 3j25_A 85 YRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN 132 (638)
T ss_dssp HHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred HHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence 2233 57899999977665 35556667777666653 6789999999974
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.22 E-value=1.3e-06 Score=79.54 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.|+||||... .+......+......-.+|.+++|++.... ......+ +.|.+.....+.+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~g---~~~~~~~----~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTIG---QQAGIQA----KAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGGG---GGHHHHH----HHHHTTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeecccc---HHHHHHH----HHHhhcccCCeEEEEeCC
Confidence 567889999999864 244455555443333478999999654421 1222222 223222102389999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 974
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.19 E-value=9.4e-07 Score=72.37 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|||||||+|+|++.
T Consensus 36 ~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 589999999999999875
No 213
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.11 E-value=8.3e-06 Score=78.77 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----c------ccCC------CCCcceeEEEEeee-------CCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-----T------VNSF------QSEALRPVMVSRSK-------GGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-----~------~~~~------~~~t~~~~~~~~~~-------~g~~v~liDTPG~~~~ 56 (256)
+|.-++|||||..+|+-..-. . +.++ .+.|-.....+..+ ++..++||||||.-|.
T Consensus 19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF 98 (709)
T 4fn5_A 19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF 98 (709)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence 477899999999998743110 0 0110 01122222223333 3578999999999875
Q ss_pred CcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 57 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 57 ~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
. .+....++ -+|..|+|++... -+......+++...+.- .|.++++||.|..
T Consensus 99 ~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 99 T---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ 150 (709)
T ss_dssp H---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST
T ss_pred H---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc
Confidence 3 23333343 5799999966654 36677777777666553 7899999999974
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.09 E-value=5.9e-06 Score=75.13 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.|+||||..... .+.....++......-.+|.+++|++... ........+.+.+.. ....+|+||.
T Consensus 178 ~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~-----~~~gVIlTKl 248 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASI---GQKAYDLASRFHQAS-----PIGSVIITKM 248 (433)
T ss_dssp TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGGHHHHHHHHHHC-----SSEEEEEECG
T ss_pred cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCcc---chHHHHHHHHHhccc-----CCcEEEEecc
Confidence 36678999999975411 12233334443322236788999954432 223344555555554 5678999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 964
No 215
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.98 E-value=8.2e-06 Score=74.48 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHhCC-----------------CcccccCCCCCcceeEEEEeee-----------CCeEEEEEeCCC
Q 025189 1 MGKGGVGKSSTVNSVIGE-----------------RVVTVNSFQSEALRPVMVSRSK-----------GGFTLNIIDTPG 52 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~-----------------~~~~~~~~~~~t~~~~~~~~~~-----------~g~~v~liDTPG 52 (256)
+|+.++|||+|+|.|+|. ..+.++ +++..+......+ ....+.++||||
T Consensus 73 ~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG 149 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG 149 (447)
T ss_dssp EESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEEC
T ss_pred ECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceEEEEcCCc
Confidence 599999999999999974 122222 2333333322222 135799999999
Q ss_pred CCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189 53 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 103 (256)
Q Consensus 53 ~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~ 103 (256)
+.+... +.+.-..|- .+..-=.++++|- +.. .+++.+.+.++.+.+
T Consensus 150 ~~~~~~-~~~~d~~if-al~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 150 TFDSQS-TLRDSATVF-ALSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp CCSSHH-HHHHHHHHH-HHHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred cccccc-chhhhHHHH-HHHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 987643 222211121 1111113455555 332 577877777766554
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.82 E-value=5.9e-05 Score=65.24 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=41.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
++..+.|+||||..... .++....+++.......+|.+++|++... .......++.+.+. .....+|+||+
T Consensus 179 ~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-----~~i~gvVlnk~ 249 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-----SKIGTIIITKM 249 (297)
T ss_dssp TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-----CTTEEEEEECG
T ss_pred CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-----CCCCEEEEeCC
Confidence 56678999999986511 22233333332211136889999965542 12223333333321 13478999999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 250 D~~ 252 (297)
T 1j8m_F 250 DGT 252 (297)
T ss_dssp GGC
T ss_pred CCC
Confidence 963
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.73 E-value=5.2e-06 Score=72.24 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~ 57 (256)
+|++|||||||+|+|.|.....++... .+|....... ..+ -.++||||+....
T Consensus 179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~~--g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSG--GLVADTPGFSSLE 238 (307)
T ss_dssp EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETT--EEEESSCSCSSCC
T ss_pred ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cCC--EEEecCCCccccc
Confidence 599999999999999997543344322 2332222222 211 3689999997643
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.70 E-value=3.5e-05 Score=67.65 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
+..+.++||+|.......--..+..+.+.+ .+|-.+++.+... ...-...++.+.+.. ..+.+++||.|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEeCcC
Confidence 445688999998654333223333444433 5788888855432 123334444454443 45689999999
Q ss_pred CC
Q 025189 122 LC 123 (256)
Q Consensus 122 ~~ 123 (256)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 63
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.68 E-value=0.00015 Score=62.94 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhh---hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T 118 (256)
+..+.++||+|........-.-++.++..+ ....++.++++.+... .......++.+.+.. ..+++++|
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~-----~~t~iivT 255 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGVIVT 255 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEEEEE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHc-----CCcEEEEE
Confidence 445679999998653211111122222222 1246888888844332 233344455555444 35789999
Q ss_pred cccCC
Q 025189 119 HAQLC 123 (256)
Q Consensus 119 k~D~~ 123 (256)
|.|..
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 99864
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.65 E-value=4e-05 Score=66.36 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~ 56 (256)
+|++|||||||+|+|. ......+.... +|....... ..+ --.++||||+...
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~--~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIP--FGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEE--ETT-TEEEESSCCCSSC
T ss_pred ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEE--cCC-CcEEEECcCcCcC
Confidence 5999999999999999 64433343321 233222222 211 1268999998743
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.64 E-value=0.00011 Score=67.85 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHh---hh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGF---LL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~---l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i 114 (256)
.+..+.++||+|..... ...+..+++. .. ...+|-+|+|++... .......++.+.+.+ .-+.
T Consensus 374 ~~~DvVLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~-----~itg 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTG 442 (503)
T ss_dssp TTCSEEEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCSE
T ss_pred cCCCEEEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhc-----CCCE
Confidence 45678999999986432 2233333322 11 234788888844332 233344455555554 3467
Q ss_pred EEEecccCC
Q 025189 115 LVLTHAQLC 123 (256)
Q Consensus 115 vv~Tk~D~~ 123 (256)
+|+||.|..
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 899999964
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.60 E-value=6.8e-05 Score=68.24 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||||.... +......+........+|.+++|++... - ......++.+.... .-.-+|+||.
T Consensus 182 ~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~--g-~~~~~~~~~f~~~l-----~i~gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT--G-QDAANTAKAFNEAL-----PLTGVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB--C-TTHHHHHHHHHHHS-----CCCCEEEECT
T ss_pred CCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch--h-HHHHHHHHHHhccC-----CCeEEEEecC
Confidence 4678999999997643 2233333332222247889999866542 2 12222333333221 2345799999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 874
No 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.55 E-value=4.9e-05 Score=65.77 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=31.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 57 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~ 57 (256)
+|++|+|||||+|.|.|......+.... +|...........| .++||||+....
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g---~v~q~p~~~~~~ 235 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE 235 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCC---EEEECcCCCccC
Confidence 6999999999999999975433333221 22222211111122 689999987544
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.49 E-value=3.7e-05 Score=68.22 Aligned_cols=52 Identities=31% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERV-VTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~ 55 (256)
+|++|||||||+|.|+|... ..++.... +|......... ++ ..++||||+.+
T Consensus 221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q~--~~l~dtpgv~e 280 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-HG--GDVIDSPGVRE 280 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-TS--CEEEECHHHHT
T ss_pred ECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-CC--CEecCcccHHH
Confidence 69999999999999999764 44443221 12222222221 22 25799999865
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.28 E-value=0.00018 Score=65.16 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.||||||.... +.....++......-.+|.+++|++.. .- ..-...++.+.+.. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence 4667899999997643 333333333222112688888986554 22 22222333333322 3467899999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 863
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.27 E-value=0.00033 Score=60.47 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.|+||||.... +...+..+...+....+|.+++|++... .. ..+..+.+.|.. ....-+|+||.
T Consensus 181 ~~~dlvIiDT~G~~~~---~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFK---DPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp GGSSEEEEECCCCCTT---SHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECT
T ss_pred cCCCEEEEeCCCCChh---hHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCC
Confidence 4567899999998643 3333444444432234677788854432 11 223333444431 24566788999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 250 D~~ 252 (296)
T 2px0_A 250 DET 252 (296)
T ss_dssp TTC
T ss_pred Ccc
Confidence 874
No 227
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.23 E-value=0.00027 Score=62.77 Aligned_cols=78 Identities=10% Similarity=0.117 Sum_probs=45.9
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC-----------CCCHHHHHHHHHHH
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-----------RVDDLDRQIIKAVT 102 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~-----------r~~~~~~~~~~~l~ 102 (256)
......+++..+.+|||+|...... ....|. .+++++|||+++++. ++ .+-..+++.+.
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~ 261 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERK-------RWFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIV 261 (362)
T ss_dssp EEEEEEETTEEEEEEEECC--------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHH
T ss_pred EEEEeeeCCeEEEEEeccchhhhhh-------hHHHHh--CCCCEEEEEEECccccccccccccccHH-HHHHHHHHHHh
Confidence 3345567889999999999854321 112222 589999999998862 12 12223444443
Q ss_pred hh-cCCcccccEEEEEecccCC
Q 025189 103 GT-FGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 103 ~~-~g~~~~~~~ivv~Tk~D~~ 123 (256)
.. ... ..++++++||+|+.
T Consensus 262 ~~~~~~--~~piILv~NK~DL~ 281 (362)
T 1zcb_A 262 NNRVFS--NVSIILFLNKTDLL 281 (362)
T ss_dssp TCGGGT--TSEEEEEEECHHHH
T ss_pred cchhhC--CCCEEEEEEChhhh
Confidence 32 111 26899999999974
No 228
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.23 E-value=0.00037 Score=62.68 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=48.9
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC----------CCCHHHHHHHHHHHhh
Q 025189 35 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----------RVDDLDRQIIKAVTGT 104 (256)
Q Consensus 35 ~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~----------r~~~~~~~~~~~l~~~ 104 (256)
.....+++..+.+|||+|........ ..|. .++++++||+++++. .--.+-..+++.+...
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~~w-------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERRKW-------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGG-------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEEeecCCccceecccchhhhhhhhh-------Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 34556788999999999986433221 1222 689999999998861 1111223344444332
Q ss_pred -cCCcccccEEEEEecccCC
Q 025189 105 -FGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 105 -~g~~~~~~~ivv~Tk~D~~ 123 (256)
... ..++++|+||+|+.
T Consensus 280 ~~~~--~~piiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLR--TISVILFLNKQDLL 297 (402)
T ss_dssp TTCS--SCCEEEEEECHHHH
T ss_pred ccCC--CCeEEEEEEChhhh
Confidence 112 26899999999973
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.21 E-value=0.00034 Score=57.03 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|||||||+|.|++.
T Consensus 44 vG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 589999999999999865
No 230
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.20 E-value=0.0002 Score=63.34 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=49.4
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhhcC
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFG 106 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~~g 106 (256)
......+++..+.+|||+|........ ..|. .++|+||||+++++... ...-......+.++..
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~w-------~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKKW-------IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHHH-------HHHH--hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 344556778999999999976432211 1222 68999999998886210 1112233333333332
Q ss_pred Cc--ccccEEEEEecccCC
Q 025189 107 KQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 107 ~~--~~~~~ivv~Tk~D~~ 123 (256)
.. ...|+++|+||+|+.
T Consensus 255 ~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred CccccCCcEEEEEECcCch
Confidence 11 126899999999974
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00017 Score=62.67 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHH---HHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELI---KGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i 114 (256)
.+..+.++||||... .....++.+ .+.+. ...+|.+++|++... ........+.+.+.. .-.-
T Consensus 185 ~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~~~~l~~a~~~~~~~-----~i~g 253 (306)
T 1vma_A 185 RNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG 253 (306)
T ss_dssp TTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred cCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHHHHHHHhcC-----CCCE
Confidence 355689999999632 233333333 33221 235888999954431 122222233333322 4567
Q ss_pred EEEecccCC
Q 025189 115 LVLTHAQLC 123 (256)
Q Consensus 115 vv~Tk~D~~ 123 (256)
+|+||.|..
T Consensus 254 vVlTk~D~~ 262 (306)
T 1vma_A 254 IILTKLDGT 262 (306)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCc
Confidence 889999974
No 232
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.03 E-value=0.0014 Score=57.71 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=49.2
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCC-----------CCCCHHHHHHHHHHH
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA-----------YRVDDLDRQIIKAVT 102 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~-----------~r~~~~~~~~~~~l~ 102 (256)
......+++..+.+|||+|.. .+......|. .+++++|||+++++ .++ .+...+++.+.
T Consensus 152 ~~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~ 221 (340)
T 4fid_A 152 HEYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIM 221 (340)
T ss_dssp EEEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHH
T ss_pred EEEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchH-HHHHHHHHHHh
Confidence 445566788999999999973 2333344444 68999999998862 112 12223333333
Q ss_pred hh-cCCcccccEEEEEecccCC
Q 025189 103 GT-FGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 103 ~~-~g~~~~~~~ivv~Tk~D~~ 123 (256)
.. ... ..++++++||+|+.
T Consensus 222 ~~~~~~--~~piiLv~NK~DL~ 241 (340)
T 4fid_A 222 TNEFLK--GAVKLIFLNKMDLF 241 (340)
T ss_dssp HCGGGT--TSEEEEEEECHHHH
T ss_pred hhhccC--CCeEEEEEECchhh
Confidence 22 112 26899999999974
No 233
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.00 E-value=0.00072 Score=59.15 Aligned_cols=81 Identities=7% Similarity=0.048 Sum_probs=49.1
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC-------CCCCCHHHHHHHHHHHhhcC
Q 025189 34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD-------AYRVDDLDRQIIKAVTGTFG 106 (256)
Q Consensus 34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d-------~~r~~~~~~~~~~~l~~~~g 106 (256)
......+++..+.+|||.|.... ......|. .+++++++|++++ +..-...-....+.+.++..
T Consensus 158 ~~~~~~~~~v~l~iwDtgGQe~~-------R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGGQRSE-------RRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp EEEEEEETTEEEEEEEECCSHHH-------HTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred EEEEEEeeceeeEEEEcCCchhH-------HHHHHHHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 44556678899999999997422 21222333 6899999998774 11111222233344444433
Q ss_pred Cc--ccccEEEEEecccCC
Q 025189 107 KQ--IWRKSLLVLTHAQLC 123 (256)
Q Consensus 107 ~~--~~~~~ivv~Tk~D~~ 123 (256)
.. ...++++++||+|+.
T Consensus 229 ~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp SGGGTTCEEEEEEECHHHH
T ss_pred hhccCCceEEEEEECchhh
Confidence 21 126899999999974
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.98 E-value=0.0012 Score=57.52 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHH---HHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELI---KGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 114 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i 114 (256)
.+..+.||||||.... +...+..+ ...+. ...+|.+++|++... . ...++.+.. |.+. ....-
T Consensus 190 ~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~---~~~l~~~~~-~~~~-~~i~G 258 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---G---QNGVIQAEE-FSKV-ADVSG 258 (320)
T ss_dssp TTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---T---HHHHHHHHH-HTTT-SCCCE
T ss_pred cCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---c---HHHHHHHHH-Hhhc-CCCcE
Confidence 4567899999998642 22222222 22221 235899999955442 1 233444433 3332 23456
Q ss_pred EEEecccCC
Q 025189 115 LVLTHAQLC 123 (256)
Q Consensus 115 vv~Tk~D~~ 123 (256)
+|+||.|..
T Consensus 259 vVltk~d~~ 267 (320)
T 1zu4_A 259 IILTKMDST 267 (320)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCC
Confidence 899999864
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.89 E-value=0.00073 Score=58.19 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
.+..+.|+||||.... +...+..+......-.+|.+++|++... .......++.+.+.. ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~~---~~~~~~~~~~~~~~~-----~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKV-----GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCCC---cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence 4567899999987543 3333333333222125788888866542 122222233333222 3466899999
Q ss_pred cCC
Q 025189 121 QLC 123 (256)
Q Consensus 121 D~~ 123 (256)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 863
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.86 E-value=0.0031 Score=50.37 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=42.3
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D 121 (256)
...+.|+|||+... ......+ ..+|.+++++..+.. +..-..+++.+.+....+...++.+|+|+++
T Consensus 75 ~yD~viiD~~~~~~-----~~~~~~l------~~ad~viiv~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VITSAAV------MVSDLVIIPVTPSPL--DFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSS-----HHHHHHH------HHCSEEEEEECSCTT--THHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCC-----HHHHHHH------HHCCEEEEEecCCHH--HHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 45789999998652 2222233 257999999776642 2445566666665532121245689999998
Q ss_pred C
Q 025189 122 L 122 (256)
Q Consensus 122 ~ 122 (256)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=3.7e-05 Score=62.57 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 53 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~ 53 (256)
+|+||||||||+|.|++... ......+.+|+.+.. ++.+|..+.++|...+
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SEEDGKEYHFISTEEM 76 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TCCTTSSCEECCHHHH
T ss_pred ECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--CeeccccceeccHHHh
Confidence 59999999999999997532 122223334444332 3456665555555544
No 238
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0041 Score=55.05 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|||||||++.|.|.
T Consensus 163 vG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhh
Confidence 699999999999999873
No 239
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0012 Score=58.50 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=41.9
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC----------CCCCCHHHHHHHHHHHhhc-CCccc
Q 025189 42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD----------AYRVDDLDRQIIKAVTGTF-GKQIW 110 (256)
Q Consensus 42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d----------~~r~~~~~~~~~~~l~~~~-g~~~~ 110 (256)
...+.+|||+|......... .|. .++|++++|++++ +..--.+...+++.+.... .. .
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~-------~y~--~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI-------HLF--EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--K 250 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG-------GGC--TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--S
T ss_pred ceeeEEEECCCchhhhHHHH-------HHh--CCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--C
Confidence 46889999999865432221 122 6899999999886 1111112223444443321 12 2
Q ss_pred ccEEEEEecccCC
Q 025189 111 RKSLLVLTHAQLC 123 (256)
Q Consensus 111 ~~~ivv~Tk~D~~ 123 (256)
.++++|+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 6899999999974
No 240
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.77 E-value=0.0043 Score=56.51 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHh-------C----------CCcccccC-CCCCcceeEEEE----e---eeCCeEEEEEeCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVI-------G----------ERVVTVNS-FQSEALRPVMVS----R---SKGGFTLNIIDTPGLVE 55 (256)
Q Consensus 1 vG~tG~GKSSliN~l~-------g----------~~~~~~~~-~~~~t~~~~~~~----~---~~~g~~v~liDTPG~~~ 55 (256)
+|..++|||+|+|.|+ | ...|.++. ..++|...-... . ...+..+.++||.|+++
T Consensus 73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d 152 (457)
T 4ido_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (457)
T ss_dssp EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence 5899999999999775 2 13344433 345555443321 1 11235689999999998
Q ss_pred CCcCcH--HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189 56 AGYVNY--QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 103 (256)
Q Consensus 56 ~~~~~~--~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~ 103 (256)
...... ..+-.+.-.+ .++++|= ... .+++.+.+-++.+.+
T Consensus 153 ~~~~~~~d~~ifaLa~LL----SS~~IyN--~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 153 SQSTLRDSATVFALSTMI----SSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp TTCCHHHHHHHHHHHHHH----CSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred cccCccccHHHHHHHHHH----hhheeec--ccc-cCCHHHHHHHHHHHH
Confidence 765421 1111111112 3455554 222 466766666655443
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0025 Score=55.10 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||+++.|.|.
T Consensus 106 vG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999999873
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0014 Score=51.80 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+||||||||++.|.+.
T Consensus 11 ~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999875
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0014 Score=52.72 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 10 vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999874
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.05 E-value=0.0016 Score=52.65 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|||||||++.|.|-
T Consensus 26 ~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.94 E-value=0.0025 Score=52.94 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 37 iG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.79 E-value=0.0024 Score=52.22 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 29 vGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999984
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.79 E-value=0.0025 Score=52.45 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|||||||++.|+|..
T Consensus 22 ~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999854
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.78 E-value=0.0024 Score=50.72 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||+++.|.|.
T Consensus 7 ~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ESSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999975
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.77 E-value=0.0027 Score=52.30 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 36 iG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EECTTSCHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.74 E-value=0.0027 Score=50.42 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 6 ~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999985
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.67 E-value=0.0037 Score=52.94 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 43 iG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999963
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.67 E-value=0.0038 Score=51.92 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.67 E-value=0.003 Score=50.50 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++||||||+++.|.|.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 599999999999999885
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.66 E-value=0.0038 Score=52.71 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 38 iG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 255
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.66 E-value=0.0038 Score=53.18 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 40 iGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 6999999999999999964
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.65 E-value=0.0039 Score=51.98 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 30 iG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 257
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.65 E-value=0.0038 Score=52.50 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 39 iG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 258
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.63 E-value=0.02 Score=43.87 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||+|++++.+.
T Consensus 42 ~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp ESSSTTTTCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999985
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.62 E-value=0.0011 Score=53.22 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+||||||||++.|+.+
T Consensus 7 ~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999865
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.60 E-value=0.0043 Score=50.85 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 41 iG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 261
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.59 E-value=0.0043 Score=51.73 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999963
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.57 E-value=0.0043 Score=51.93 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999963
No 263
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.56 E-value=0.019 Score=49.28 Aligned_cols=64 Identities=8% Similarity=0.114 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH-HHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189 44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 122 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~ 122 (256)
.+.+||| ..........+ + .++|++++|+++++...+. .-..++..+... ..++++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~~~-------~--~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~-----~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPH-------V--ANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-----ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTTT-------E--ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-----TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeeccc-------c--ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEeHHHc
Confidence 7899999 33222222211 1 5899999998887633232 223455544431 2789999999998
Q ss_pred C
Q 025189 123 C 123 (256)
Q Consensus 123 ~ 123 (256)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 5
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.55 E-value=0.0045 Score=48.51 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.+++.
T Consensus 15 ~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp ECCTTSCHHHHHHHHSCG
T ss_pred ECCCCCCHHHHHHHHccC
Confidence 699999999999987653
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.54 E-value=0.0045 Score=51.11 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.51 E-value=0.0046 Score=51.76 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999995
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.49 E-value=0.0048 Score=52.18 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 56 iG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCCcHHHHHHHHHcCC
Confidence 5999999999999999964
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.47 E-value=0.0048 Score=51.32 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.47 E-value=0.0049 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|-..
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999643
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.47 E-value=0.0049 Score=51.88 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.42 E-value=0.0052 Score=52.00 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999996
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.40 E-value=0.0053 Score=51.78 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999963
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.37 E-value=0.0054 Score=52.03 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.36 E-value=0.0043 Score=52.35 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 31 ~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp ECSTTCSHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 599999999999999984
No 275
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.34 E-value=0.0057 Score=52.14 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 53 iG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999964
No 276
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.33 E-value=0.0057 Score=51.35 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.33 E-value=0.0053 Score=48.48 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|.+.
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999986
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.32 E-value=0.0058 Score=51.68 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 39 iG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.28 E-value=0.0055 Score=49.57 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++||||||+++.|.+..
T Consensus 14 ~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp ECCTTSCHHHHHHHHHHST
T ss_pred ECcCCCCHHHHHHHHHhhC
Confidence 5999999999999998764
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.12 E-value=0.0047 Score=49.88 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 28 ~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp ECCTTSCTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999885
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.06 E-value=0.0079 Score=50.83 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.03 E-value=0.0064 Score=47.32 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+.|+|||||++.|.|.-
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999999864
No 283
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.98 E-value=0.0053 Score=53.11 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|+|-
T Consensus 86 vG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ESSSCHHHHHHHHHHTTS
T ss_pred ECCCCchHHHHHHHHHcC
Confidence 699999999999999995
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.97 E-value=0.0046 Score=50.41 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999986
No 285
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.97 E-value=0.0085 Score=53.12 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 60 iGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHhcCC
Confidence 6999999999999999964
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.91 E-value=0.0088 Score=52.81 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 47 lGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 287
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.89 E-value=0.0091 Score=53.22 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|||||||++.|.|-.
T Consensus 35 lGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHcCC
Confidence 6999999999999999964
No 288
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.83 E-value=0.0079 Score=53.18 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|||||||++.|.|-.
T Consensus 36 lGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EESTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999964
No 289
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.82 E-value=0.0098 Score=52.65 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999964
No 290
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.80 E-value=0.0098 Score=52.59 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHCCC
Confidence 5999999999999999963
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.75 E-value=0.0086 Score=51.36 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999999964
No 292
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.75 E-value=0.0079 Score=53.13 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|+|.
T Consensus 129 ~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999885
No 293
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.75 E-value=0.01 Score=52.73 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCcHHHHHHHHHHcCC
Confidence 5999999999999999964
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.73 E-value=0.008 Score=51.96 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 132 vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 699999999999999863
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.71 E-value=0.007 Score=48.66 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|.|.
T Consensus 12 ~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 12 AGGTASGKTTLAQALART 29 (211)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999884
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.70 E-value=0.0087 Score=52.89 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+||+|||||+|+|+|.-
T Consensus 181 vG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp EESSSSCHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 5999999999999999963
No 297
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.70 E-value=0.011 Score=52.56 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 43 lGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999963
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.64 E-value=0.0091 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++||||||+++.|.+.-
T Consensus 12 ~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999998753
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.63 E-value=0.007 Score=49.61 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=11.3
Q ss_pred CCCCCCCHHHHHHHHh-CC
Q 025189 1 MGKGGVGKSSTVNSVI-GE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~-g~ 18 (256)
+|++||||||+++.|. |.
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECSCC----CHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 5999999999999999 75
No 300
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.59 E-value=0.059 Score=47.55 Aligned_cols=16 Identities=38% Similarity=0.572 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++++|.
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999987
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.58 E-value=0.0096 Score=47.00 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+||||+++.|.+
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 59999999999999975
No 302
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.57 E-value=0.041 Score=44.42 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCC-CCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189 42 GFTLNIIDTPGL-VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120 (256)
Q Consensus 42 g~~v~liDTPG~-~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~ 120 (256)
...+.|+|||+. ... .....+ ..+|.+++++..+...+ ..-..+++.+.+.. + .+..+|+|++
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~--~--~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALAL-DALMLTIETLQKLG--N--NRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHH-HHHHHHHHHHHHTC--S--SSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhH-HHHHHHHHHHHhcc--C--CCEEEEEEec
Confidence 456899999986 432 122222 36899999966553111 12234445555432 1 4578999999
Q ss_pred cC
Q 025189 121 QL 122 (256)
Q Consensus 121 D~ 122 (256)
+.
T Consensus 131 ~~ 132 (209)
T 3cwq_A 131 PP 132 (209)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 303
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.54 E-value=0.009 Score=52.16 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||+|+|.|.-
T Consensus 177 ~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EESTTSCHHHHHHHGGGGS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.48 E-value=0.01 Score=47.51 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 7 ~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp ESCCSSCHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhh
Confidence 599999999999999985
No 305
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.43 E-value=0.0092 Score=52.55 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 32 lGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCccHHHHHHHHHcCC
Confidence 5999999999999999964
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.014 Score=46.80 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+++.|...
T Consensus 18 ~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999754
No 307
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.28 E-value=0.013 Score=52.48 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 53 lGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EESTTSSHHHHHHHHHTCS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 5999999999999999954
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.28 E-value=0.013 Score=46.42 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|++.
T Consensus 12 ~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHh
Confidence 499999999999999975
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.27 E-value=0.013 Score=45.43 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+.+.|.+.
T Consensus 10 ~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998764
No 310
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.23 E-value=0.012 Score=53.07 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|+|.
T Consensus 173 ~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999985
No 311
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.19 E-value=0.011 Score=47.89 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999884
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.17 E-value=0.013 Score=52.07 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|+|.
T Consensus 142 vG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999984
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.15 E-value=0.014 Score=46.72 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|.+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998753
No 314
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.14 E-value=0.016 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++++.+.
T Consensus 44 ~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999875
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.13 E-value=0.014 Score=50.63 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|||||||++.|.|.
T Consensus 96 ~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHhh
Confidence 599999999999999884
No 316
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.11 E-value=0.009 Score=52.71 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 37 lGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.11 E-value=0.013 Score=54.23 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+||||||||+|+|+|.
T Consensus 266 ~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EESTTSSHHHHHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999985
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.10 E-value=0.0056 Score=48.30 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.+.
T Consensus 8 vG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EESCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 589999999999999985
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.07 E-value=0.019 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHh---CCC
Q 025189 1 MGKGGVGKSSTVNSVI---GER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~---g~~ 19 (256)
+|++||||||+++.|. |-.
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCe
Confidence 5999999999999999 754
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.05 E-value=0.015 Score=46.56 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+.+.|.+.
T Consensus 31 ~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998874
No 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.94 E-value=0.2 Score=43.56 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+||||+++.+.+.
T Consensus 50 ~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.85 E-value=0.018 Score=45.07 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+||||++.+|.+
T Consensus 32 ~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 32 VGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999864
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.83 E-value=0.014 Score=51.42 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|.
T Consensus 176 vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp ECCTTSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999985
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.80 E-value=0.022 Score=46.67 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+|||||++.|+
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5999999999999888
No 325
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.75 E-value=0.011 Score=48.97 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|.|-
T Consensus 33 ~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HSCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999999884
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.54 E-value=0.02 Score=44.40 Aligned_cols=17 Identities=41% Similarity=0.603 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|.+
T Consensus 14 ~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.54 E-value=0.02 Score=47.35 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|.|.
T Consensus 31 ~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998763
No 328
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.35 E-value=0.028 Score=52.34 Aligned_cols=19 Identities=42% Similarity=0.796 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|.-
T Consensus 31 iGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999963
No 329
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.31 E-value=0.029 Score=52.26 Aligned_cols=19 Identities=37% Similarity=0.671 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 53 vG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999963
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.26 E-value=0.029 Score=43.03 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.24 E-value=0.025 Score=45.79 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+.+.|.+.
T Consensus 11 ~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998753
No 332
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.22 E-value=0.031 Score=42.74 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSV 15 (256)
Q Consensus 1 vG~tG~GKSSliN~l 15 (256)
+|.+||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999999
No 333
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.20 E-value=0.031 Score=52.48 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|--
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999963
No 334
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.19 E-value=0.032 Score=43.29 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+.+.|...
T Consensus 9 ~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998753
No 335
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.032 Score=52.76 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 109 vGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 6999999999999999964
No 336
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.10 E-value=0.035 Score=42.49 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++.+|.
T Consensus 29 ~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999875
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.02 E-value=0.036 Score=44.26 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|.+
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999976
No 338
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.93 E-value=0.03 Score=52.59 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|--
T Consensus 375 vG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTSSHHHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhhcc
Confidence 5999999999999999963
No 339
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.88 E-value=0.029 Score=51.52 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+|||||++.|.|
T Consensus 35 iG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 59999999999999987
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.82 E-value=0.028 Score=46.01 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|.+.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 499999999999999875
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.82 E-value=0.018 Score=49.77 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||++|.|+|.
T Consensus 10 ~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EESSSSSCHHHHHHHHHS
T ss_pred EecCCCCHHHHHHHHHhh
Confidence 489999999999999975
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.81 E-value=0.04 Score=45.85 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++||||||+++.|.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999998
No 343
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.76 E-value=0.038 Score=52.20 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 123 iG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 6999999999999999964
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.76 E-value=0.026 Score=48.55 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+|||||++.|.|.
T Consensus 86 ~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999874
No 345
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.71 E-value=0.026 Score=52.93 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|.-
T Consensus 373 vG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 6999999999999999963
No 346
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.62 E-value=0.032 Score=52.47 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|--
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999963
No 347
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.59 E-value=0.3 Score=40.76 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++.+.
T Consensus 57 ~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp ESSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999754
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.58 E-value=0.029 Score=44.91 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+++.|.+
T Consensus 28 ~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999875
No 349
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.57 E-value=0.03 Score=52.80 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|--
T Consensus 387 vG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCc
Confidence 6999999999999999963
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.53 E-value=0.038 Score=44.19 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+.+.|.+.
T Consensus 27 ~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999999886
No 351
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.50 E-value=0.045 Score=42.28 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999975
No 352
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.49 E-value=0.029 Score=52.79 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|--
T Consensus 376 vG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999963
No 353
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.63 Score=42.07 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||+++.++.++
T Consensus 222 GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 222 GPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SCTTSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 99999999999999875
No 354
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.40 E-value=0.046 Score=43.53 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|.+
T Consensus 24 ~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.37 E-value=0.047 Score=50.86 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|-.
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 356
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.26 E-value=0.05 Score=43.34 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+...|.+
T Consensus 31 ~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998874
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.25 E-value=0.04 Score=45.53 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||++++|.+.
T Consensus 55 ~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999875
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.22 E-value=0.04 Score=44.32 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+|||||++.|.+
T Consensus 29 ~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999985
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.21 E-value=0.041 Score=47.85 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+++.|.+.
T Consensus 98 ~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999888653
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.035 Score=50.70 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.|-
T Consensus 144 vGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp EESTTSSHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 599999999999999985
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.99 E-value=0.038 Score=43.99 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|.+
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 48999999999999976
No 362
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.92 E-value=0.55 Score=38.39 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++..+
T Consensus 45 ~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999999763
No 363
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.85 E-value=0.046 Score=46.23 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|.|.
T Consensus 50 ~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ESSTTSCHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999874
No 364
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.81 E-value=0.17 Score=44.69 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
+.+.+.++.+. ...|++|+|+++.+ .+..+...+.+.++. +++++|+||+|+.+
T Consensus 57 e~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 57 DDFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIP 110 (368)
T ss_dssp HHHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSC
T ss_pred HHHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCC
Confidence 44444444333 47889999977753 234555666666653 79999999999963
No 365
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.73 E-value=0.32 Score=42.04 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++++.+...
T Consensus 50 ~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CBCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.72 E-value=0.85 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|++|+|||||+..+..
T Consensus 67 ~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIA 83 (356)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999988775
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.64 E-value=0.064 Score=41.84 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998853
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.57 E-value=0.066 Score=42.22 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+++.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISK 22 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 49999999999998875
No 369
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.47 E-value=0.08 Score=41.27 Aligned_cols=17 Identities=24% Similarity=0.476 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 9 ~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 370
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.32 E-value=0.99 Score=37.76 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++++++.+.
T Consensus 60 ~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVATE 77 (297)
T ss_dssp ESSSSSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHH
Confidence 499999999999999764
No 371
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.31 E-value=0.072 Score=49.55 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|...
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999643
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.30 E-value=0.059 Score=46.05 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|.+.
T Consensus 37 ~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988764
No 373
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.27 E-value=0.061 Score=41.96 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999865
No 374
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.26 E-value=0.073 Score=50.28 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.25 E-value=0.075 Score=41.41 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998863
No 376
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.21 E-value=0.061 Score=45.19 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+++|.+.
T Consensus 79 ~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcChHHHHHHHHHHH
Confidence 599999999999999875
No 377
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.16 E-value=0.062 Score=42.96 Aligned_cols=17 Identities=18% Similarity=0.026 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+|||||++.|.+
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999987
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.14 E-value=0.078 Score=44.16 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|.+
T Consensus 7 ~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 59999999999999864
No 379
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.13 E-value=0.052 Score=47.67 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 77 iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 380
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.077 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 025189 1 MGKGGVGKSSTVNSVIGERV 20 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~ 20 (256)
+|++|+|||||++.|.|-..
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCCcHHHHHHHHhcCCC
Confidence 59999999999999999643
No 381
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.02 E-value=0.085 Score=41.43 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|+..
T Consensus 10 ~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999999864
No 382
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.98 E-value=0.067 Score=41.87 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 11 TGHPATGKTTLSQALAT 27 (193)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998854
No 383
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.97 E-value=0.063 Score=46.55 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.+.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999875
No 384
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.97 E-value=0.085 Score=42.42 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++.+|.
T Consensus 29 ~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 29 IGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999999874
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.93 E-value=0.085 Score=41.02 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+.+.|.+.
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998763
No 386
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.87 E-value=0.056 Score=48.99 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 163 vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999864
No 387
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.86 E-value=0.056 Score=45.83 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.|.+.
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 589999999999988763
No 388
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=1.1 Score=40.37 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||+++.++.++
T Consensus 223 GPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 223 GAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SSTTTTHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999875
No 389
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.61 E-value=0.093 Score=40.79 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|.+|+||||+.+.|.
T Consensus 17 ~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 17 TGTPGVGKTTLGKELA 32 (180)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 4999999999999887
No 390
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.57 E-value=0.077 Score=43.11 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||+..|.+.
T Consensus 30 ~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999874
No 391
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.53 E-value=0.095 Score=41.12 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+.+.|...
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999988654
No 392
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.50 E-value=0.052 Score=55.88 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
||+||+||||+++.|++-
T Consensus 1111 VG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 699999999999999984
No 393
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.38 E-value=0.082 Score=44.98 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 39 ~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp ECCTTSCTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999964
No 394
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.27 E-value=0.11 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+...|..
T Consensus 10 ~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 10 IGFMGSGKSTLARALAK 26 (175)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 395
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.24 E-value=0.12 Score=40.52 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.20 E-value=0.11 Score=40.70 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|.+.
T Consensus 19 ~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998754
No 397
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.15 E-value=0.084 Score=52.50 Aligned_cols=19 Identities=42% Similarity=0.753 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 705 iGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 398
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.12 E-value=0.13 Score=39.52 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++++.+...
T Consensus 49 ~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 399
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.08 E-value=1.1 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||+++.++.++
T Consensus 213 GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 213 GPPGTGKTMLVKAVANS 229 (428)
T ss_dssp SCTTTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999874
No 400
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.05 E-value=0.087 Score=54.23 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|+|.
T Consensus 450 vG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EECSSSCHHHHHHHHTTS
T ss_pred EecCCCcHHHHHHHhccc
Confidence 699999999999999996
No 401
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.01 E-value=0.094 Score=53.82 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|+|.-
T Consensus 422 vG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999863
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.99 E-value=0.11 Score=41.57 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|.+||||||+.+.|.
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQII 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999884
No 403
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.92 E-value=2.1 Score=36.27 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||+++.++...
T Consensus 55 G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 55 PSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SSTTSSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 77999999999998643
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.84 E-value=0.12 Score=40.83 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.+||||||+++.|...
T Consensus 10 ~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp ECCTTSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998754
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.81 E-value=0.094 Score=43.80 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|.+
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 406
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.62 E-value=0.13 Score=39.51 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 8 VGARGCGMTTVGRELAR 24 (173)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988853
No 407
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.44 E-value=0.13 Score=40.00 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 9 ~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988753
No 408
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.41 E-value=0.15 Score=40.29 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 10 ~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKD 26 (213)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 409
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.39 E-value=0.13 Score=44.67 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++.+|.
T Consensus 29 ~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAIL 44 (339)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999974
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.38 E-value=0.1 Score=46.26 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+||||+++.|.+.
T Consensus 175 ~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 499999999999999863
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.34 E-value=0.13 Score=41.15 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.25 E-value=0.14 Score=41.17 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.24 E-value=0.14 Score=39.11 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp ESCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.24 E-value=0.049 Score=43.47 Aligned_cols=18 Identities=33% Similarity=0.566 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+++.|...
T Consensus 6 ~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 488999999999998753
No 415
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.19 E-value=0.088 Score=50.19 Aligned_cols=16 Identities=50% Similarity=0.752 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+|||||+|.++
T Consensus 354 iGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 354 TGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ECSTTSSHHHHHTTTH
T ss_pred EeeCCCCHHHHHHHHH
Confidence 6999999999998765
No 416
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.18 E-value=0.16 Score=39.56 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 417
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.09 E-value=0.12 Score=41.14 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 16 ~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.03 E-value=0.12 Score=40.42 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 15 ~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998853
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.90 E-value=0.12 Score=42.62 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.+|.+.
T Consensus 51 ~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHH
Confidence 499999999999999764
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.89 E-value=0.13 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+.+.|...
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999998764
No 421
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.81 E-value=0.16 Score=39.58 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+...|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988753
No 422
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.78 E-value=4 Score=34.85 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++..+
T Consensus 51 ~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp ESSSSSCHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHH
Confidence 399999999999999864
No 423
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.77 E-value=0.1 Score=45.06 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++.+|.
T Consensus 30 ~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 30 VGPNGSGKSNIIDAIK 45 (322)
T ss_dssp ECCTTTCSTHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 5999999999999987
No 424
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.75 E-value=0.18 Score=44.43 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=29.9
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
.+.+++++|+++.+. . ..+...+.+.++. +++++|+||+|+.+
T Consensus 70 ~~~~lil~VvD~~d~--~---~s~~~~l~~~l~~---~piilV~NK~DLl~ 112 (369)
T 3ec1_A 70 ESKALVVNIVDIFDF--N---GSFIPGLPRFAAD---NPILLVGNKADLLP 112 (369)
T ss_dssp HHCCEEEEEEETTCS--G---GGCCSSHHHHCTT---SCEEEEEECGGGSC
T ss_pred ccCcEEEEEEECCCC--C---CchhhHHHHHhCC---CCEEEEEEChhcCC
Confidence 468899999777642 2 1334444555553 79999999999964
No 425
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.65 E-value=0.13 Score=46.29 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+||||++++|.+
T Consensus 32 ~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISF 48 (430)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999875
No 426
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.59 E-value=2.3 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++.++
T Consensus 249 yGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 249 YGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSCTTSSHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHHHHhc
Confidence 499999999999999875
No 427
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.51 E-value=0.037 Score=49.27 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+|||||+++|.
T Consensus 66 vG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 66 TGETGAGKSIIVDALG 81 (415)
T ss_dssp EESHHHHHHHHTHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999998874
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.49 E-value=0.17 Score=40.03 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 21 ~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 429
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.47 E-value=0.14 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 18 ~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998864
No 430
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.34 E-value=0.14 Score=41.44 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|.+||||||+.+.|.
T Consensus 13 ~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999999886
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.30 E-value=0.14 Score=41.26 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+++.|..
T Consensus 11 ~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 11 SGAPASGKGTQCELIKT 27 (222)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.27 E-value=0.17 Score=40.46 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+++.|.+.
T Consensus 31 ~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 433
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.26 E-value=0.18 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|..
T Consensus 26 ~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 434
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.18 E-value=0.15 Score=40.59 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+++.|..
T Consensus 15 ~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 435
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.16 E-value=0.14 Score=50.99 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|.|..
T Consensus 467 iGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp ECSTTSSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999643
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.15 E-value=0.15 Score=39.66 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 12 ~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998853
No 437
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.14 E-value=0.21 Score=39.41 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++...
T Consensus 60 ~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998864
No 438
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.09 E-value=0.18 Score=44.57 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+|||++++.|+..
T Consensus 41 ~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 41 LAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 599999999999999864
No 439
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.05 E-value=2.6 Score=37.55 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||+++.++.++
T Consensus 189 GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 189 GPPGTGKTLLARAVAHH 205 (405)
T ss_dssp SCSSSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999875
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.00 E-value=0.19 Score=41.89 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 10 ~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.00 E-value=0.19 Score=41.53 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|++|+||||+.+.|..
T Consensus 15 ~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998873
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.91 E-value=0.18 Score=40.75 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|+||+|||++...|...-
T Consensus 40 ~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ECCCTTTTHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 4999999999999998753
No 443
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.91 E-value=0.19 Score=40.39 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 10 ~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 444
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=87.88 E-value=0.15 Score=44.84 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+||||++++|.+
T Consensus 32 ~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 32 YGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCChhHHHHHHHH
Confidence 59999999999999875
No 445
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.85 E-value=0.15 Score=44.13 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|.||+||||+.+.|++..
T Consensus 150 ~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHhcC
Confidence 4899999999999999753
No 446
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.83 E-value=0.99 Score=38.45 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 123 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~ 123 (256)
..+|++++|+++....++... .+++..+.. . ..+.++|+||+|+.
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~--~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---F--KVEPVIVFNKIDLL 123 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---T--TCEEEEEECCGGGC
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---C--CCCEEEEEEcccCC
Confidence 589999999888753334332 234444433 1 27899999999985
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.82 E-value=0.2 Score=40.02 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 18 tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999988864
No 448
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.78 E-value=0.12 Score=39.97 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=10.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp ECCC----CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.70 E-value=0.13 Score=43.14 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|++|+|||||+..+.+
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999998886
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.64 E-value=0.2 Score=40.56 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 451
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.62 E-value=0.21 Score=38.26 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+...|..
T Consensus 13 ~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998743
No 452
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.52 E-value=0.091 Score=49.04 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+||||||+++.|.+.
T Consensus 375 iG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EESSCHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHh
Confidence 599999999999999875
No 453
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.48 E-value=0.24 Score=39.71 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++...
T Consensus 58 ~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 454
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.46 E-value=0.19 Score=51.51 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 025189 1 MGKGGVGKSSTVNSVIGER 19 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~ 19 (256)
+|++|+|||||++.|+|-.
T Consensus 1065 vG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999953
No 455
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.29 E-value=0.12 Score=42.76 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|..
T Consensus 38 ~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp ESCGGGTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.25 E-value=0.18 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++..+...
T Consensus 49 ~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp ESCGGGCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988764
No 457
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.11 E-value=0.19 Score=40.35 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998853
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=87.11 E-value=0.18 Score=44.32 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+||||++.||.
T Consensus 31 ~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 31 IGENGSGKSSIFEAVF 46 (371)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998864
No 459
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.04 E-value=0.33 Score=41.99 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|++|+||||++..+..
T Consensus 44 ~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 44 SGTRGVGKTSIARLLAK 60 (373)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999988865
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.84 E-value=0.26 Score=43.07 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-cccC--------CCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-TVNS--------FQSEALRPVMVSRSKGGFTLNIIDTPGL 53 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-~~~~--------~~~~t~~~~~~~~~~~g~~v~liDTPG~ 53 (256)
+|+||||||||...|...-.. .++. ..-+|..+. ..+..|.+..++|...+
T Consensus 46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 599999999999999875321 1111 112333332 23466777788888777
No 461
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.78 E-value=1.5 Score=38.44 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++..+
T Consensus 154 ~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp ESSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 399999999999999643
No 462
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.78 E-value=0.19 Score=43.29 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+||||+++.|.+.
T Consensus 42 ~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLES 59 (354)
T ss_dssp ECSTTSSHHHHHHTHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998773
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.71 E-value=0.24 Score=41.78 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999875
No 464
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.62 E-value=0.27 Score=45.35 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.||+|||+++|+|+..
T Consensus 173 aG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 173 AGTTGSGASVGVNAMILS 190 (512)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 465
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.59 E-value=2.5 Score=37.90 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++...
T Consensus 173 ~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 173 FGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999999864
No 466
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.57 E-value=0.29 Score=38.58 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+|+||||+.+.|.+
T Consensus 8 ~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 8 DGPSASGKSSVARRVAA 24 (208)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998854
No 467
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.46 E-value=0.26 Score=40.54 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+...|..
T Consensus 35 ~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998863
No 468
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.18 E-value=0.32 Score=38.20 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++..+...
T Consensus 44 ~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 44 SGPPGTGKTATAIALARD 61 (226)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999988753
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.11 E-value=0.28 Score=42.52 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-ccc--------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189 1 MGKGGVGKSSTVNSVIGERVV-TVN--------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 56 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~~~~-~~~--------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~ 56 (256)
+|+||||||||...|...-.. .++ ...-+|..+. ..+.+|.+-.++|.-.+.+.
T Consensus 9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~~gvphhlid~~~~~e~ 71 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEMDGVPHHLIDIKDPSES 71 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHHTTCCEESSSCBCTTSC
T ss_pred ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHHcCCCEEEeccCChhhh
Confidence 499999999999999754211 111 1122333332 23566777788887776653
No 470
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.99 E-value=0.28 Score=39.88 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|..
T Consensus 22 ~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 471
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.98 E-value=0.32 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++..+...
T Consensus 51 ~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999988753
No 472
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.94 E-value=0.33 Score=39.71 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.+|+||||+++.|...
T Consensus 32 ~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999988764
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.72 E-value=0.29 Score=42.42 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+|||||||+...|...
T Consensus 11 ~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADA 28 (323)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988754
No 474
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.65 E-value=5.6 Score=39.37 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSV 15 (256)
Q Consensus 1 vG~tG~GKSSliN~l 15 (256)
+|++|+||||+++.+
T Consensus 668 tGpNGsGKSTlLr~i 682 (934)
T 3thx_A 668 TGPNMGGKSTYIRQT 682 (934)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999998
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=85.44 E-value=2 Score=36.82 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
..+|.+++|+++....++.. .+-+.|......+ ++.++|+||+|+.+
T Consensus 85 anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~~--~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEAND--IQPIICITKMDLIE 131 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTTT--CEEEEEEECGGGCC
T ss_pred HhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHCC--CCEEEEEECCccCc
Confidence 47999999977764344443 2333333222222 78899999999964
No 476
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.41 E-value=0.37 Score=36.14 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++..+|...
T Consensus 30 ~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998754
No 477
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.39 E-value=0.35 Score=39.85 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
.|.+||||||+.+.|..
T Consensus 28 ~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 478
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.37 E-value=0.26 Score=39.62 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998843
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.36 E-value=0.32 Score=42.04 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+||||||||...|...
T Consensus 16 ~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 16 MGPTASGKTALAIELRKI 33 (316)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHh
Confidence 499999999999999753
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.33 E-value=0.21 Score=43.70 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|++|+|||||++.+.+.
T Consensus 137 ~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999999875
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.28 E-value=0.34 Score=40.02 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++.+.
T Consensus 50 ~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp BCSSCSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999764
No 482
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.27 E-value=0.31 Score=42.55 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|+|||||||+...|...
T Consensus 13 ~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKK 30 (340)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCcCcHHHHHHHHHHH
Confidence 499999999999888753
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.78 E-value=0.23 Score=45.88 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHH
Q 025189 1 MGKGGVGKSSTVNSV 15 (256)
Q Consensus 1 vG~tG~GKSSliN~l 15 (256)
+|++|+|||||++.+
T Consensus 45 ~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQF 59 (525)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 599999999999984
No 484
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.73 E-value=0.3 Score=39.55 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
+|++|+|||||+..++
T Consensus 29 ~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999976665
No 485
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.66 E-value=0.32 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.++.+.
T Consensus 43 ~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999864
No 486
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.44 E-value=0.3 Score=41.23 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 025189 1 MGKGGVGKSSTVNSVI 16 (256)
Q Consensus 1 vG~tG~GKSSliN~l~ 16 (256)
.|.+||||||+.+.|.
T Consensus 81 ~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK 96 (281)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999999886
No 487
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=84.39 E-value=1.8 Score=36.39 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189 74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 124 (256)
Q Consensus 74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~ 124 (256)
..+|+|+.|+++.+...+. .. .+.+..+. ++.++|+||+|+.+
T Consensus 22 ~~aDvVl~VvDAr~p~~~~-~~----~l~~~l~~---kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 22 KLIDIVYELVDARIPMSSR-NP----MIEDILKN---KPRIMLLNKADKAD 64 (282)
T ss_dssp GGCSEEEEEEETTSTTTTS-CH----HHHHHCSS---SCEEEEEECGGGSC
T ss_pred hhCCEEEEEEeCCCCCccC-CH----HHHHHHCC---CCEEEEEECcccCC
Confidence 5899999997765422221 11 22233333 89999999999963
No 488
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.11 E-value=0.3 Score=42.22 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+||||+++.+.+.
T Consensus 51 ~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999999864
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.09 E-value=0.34 Score=41.75 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+||||++.++.+.
T Consensus 52 ~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALARE 69 (340)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998875
No 490
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.88 E-value=0.36 Score=41.01 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++++++.+.
T Consensus 55 ~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 499999999999999864
No 491
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=83.63 E-value=1.9 Score=35.25 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=30.5
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc---ccccEEEEEecc
Q 025189 44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ---IWRKSLLVLTHA 120 (256)
Q Consensus 44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~---~~~~~ivv~Tk~ 120 (256)
++.+..+||-.+.+.. ..+....+++. ...|+++||++..+.+..+ -+.-++.|..++.++ .-.+++|+.||.
T Consensus 97 k~~~~~~~~~~~~GGQ-~klRplWr~Yy--~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKq 172 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSR-YSVIPQIQKVC--EVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCIS 172 (227)
T ss_dssp ---------------------CCHHHHH--HHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEES
T ss_pred hcccccCCCccccCcH-HHHHHHHHHHh--cCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCC
Confidence 4456677763222111 12222223333 4789999997776543222 233333444544432 135788888986
Q ss_pred -cC
Q 025189 121 -QL 122 (256)
Q Consensus 121 -D~ 122 (256)
|+
T Consensus 173 qDl 175 (227)
T 3l82_B 173 QGD 175 (227)
T ss_dssp STT
T ss_pred cCc
Confidence 55
No 492
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.51 E-value=0.42 Score=38.92 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 025189 1 MGKGGVGKSSTVNSVIG 17 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g 17 (256)
+|.+|+||||+.+.|.+
T Consensus 22 ~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ECSSCSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998874
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.38 E-value=0.48 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+|+.+|...
T Consensus 158 ~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999988764
No 494
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.27 E-value=0.36 Score=39.19 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHHhC
Q 025189 2 GKGGVGKSSTVNSVIG 17 (256)
Q Consensus 2 G~tG~GKSSliN~l~g 17 (256)
|++|+||||++.+|..
T Consensus 65 GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 65 GPANTGKSYFGMSFIH 80 (212)
T ss_dssp SCGGGCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999988887764
No 495
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.20 E-value=0.43 Score=42.71 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
+|.+|+||||+.+.|...
T Consensus 264 ~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp ESCTTSSHHHHHHHHTGG
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998754
No 496
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.87 E-value=0.31 Score=36.49 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||++..++...
T Consensus 33 ~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEETTCCHHHHHGGGCCT
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 389999999999988764
No 497
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.77 E-value=0.37 Score=40.61 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|++|+|||+++.+|.+.
T Consensus 53 ~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp ESCSSSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 499999999999988764
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.68 E-value=0.45 Score=40.30 Aligned_cols=17 Identities=35% Similarity=0.435 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHhCC
Q 025189 2 GKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 2 G~tG~GKSSliN~l~g~ 18 (256)
|++|+|||++..++...
T Consensus 43 GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRK 59 (293)
T ss_dssp ECTTSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998754
No 499
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.65 E-value=0.22 Score=42.34 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=11.4
Q ss_pred CCCCCCHHHHHHHHhC
Q 025189 2 GKGGVGKSSTVNSVIG 17 (256)
Q Consensus 2 G~tG~GKSSliN~l~g 17 (256)
|.+||||||+.+.|..
T Consensus 12 G~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCC---CCTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8999999999998764
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.60 E-value=0.44 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 025189 1 MGKGGVGKSSTVNSVIGE 18 (256)
Q Consensus 1 vG~tG~GKSSliN~l~g~ 18 (256)
.|.||+||||+.-.|...
T Consensus 22 ~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 22 TGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESSSSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHc
Confidence 489999999999888765
Done!