BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025190
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 25/235 (10%)
Query: 8 LVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRAL 67
FD+D+ LY S T I ++++I F S A L +K YG + GL +
Sbjct: 33 FFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 91
Query: 68 GYDIGADDYHGFVHGRLPY-DLIKPDPQLRNLLCSITQ-----RKIIFTNSDRNHAITCL 121
+ + A +Y+ V LP D++KPD LRN+L + Q + +FTN+ +NHAI CL
Sbjct: 92 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 151
Query: 122 KRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFL 180
+ L IAD FD + +R D ++ KP + A + A+ + + +A F+
Sbjct: 152 RLLGIADLFDGL--------TYCDYSRTDT--LVCKPHVKAFEKAMKESGLARYENAYFI 201
Query: 181 DDNIKNVTAGKALGLRTV--LVGKTVN-----VGEADYALENVNNLPQVVPEIWV 228
DD+ KN+ G LG++T LV VN E + ++ LP VV ++++
Sbjct: 202 DDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLFL 256
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 25/234 (10%)
Query: 8 LVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRAL 67
FD+D+ LY S T I ++++I F S A L +K YG + GL +
Sbjct: 60 FFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 118
Query: 68 GYDIGADDYHGFVHGRLPY-DLIKPDPQLRNLLCSITQ-----RKIIFTNSDRNHAITCL 121
+ + A +Y+ V LP D++KPD LRN+L + Q + +FTN+ +NHAI CL
Sbjct: 119 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 178
Query: 122 KRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFL 180
+ L IAD FD + +R D ++ KP + A + A+ + + +A F+
Sbjct: 179 RLLGIADLFDGL--------TYCDYSRTD--TLVCKPHVKAFEKAMKESGLARYENAYFI 228
Query: 181 DDNIKNVTAGKALGLRTV--LVGKTVN-----VGEADYALENVNNLPQVVPEIW 227
DD+ KN+ G LG++T LV VN E + ++ LP VV +++
Sbjct: 229 DDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF 282
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 25/233 (10%)
Query: 10 FDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRALGY 69
F +D+ LY S T I ++++I F S A L +K YG + GL + +
Sbjct: 35 FAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 93
Query: 70 DIGADDYHGFVHGRLPY-DLIKPDPQLRNLLCSITQ-----RKIIFTNSDRNHAITCLKR 123
+ A +Y+ V LP D++KPD LRN+L + Q + +FTN+ +NHAI CL+
Sbjct: 94 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRL 153
Query: 124 LEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDD 182
L IAD FD + +R D ++ KP + A + A+ + + +A F+DD
Sbjct: 154 LGIADLFDGL--------TYCDYSRTDT--LVCKPHVKAFEKAMKESGLARYENAYFIDD 203
Query: 183 NIKNVTAGKALGLRTV--LVGKTVN-----VGEADYALENVNNLPQVVPEIWV 228
+ KN+ G LG++T LV VN E + ++ LP VV ++++
Sbjct: 204 SGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLFL 256
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 91/241 (37%), Gaps = 42/241 (17%)
Query: 6 NCLVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAG-- 63
+ FDLDDTL + A K IE + A S +EL K YGS
Sbjct: 3 KVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHF 62
Query: 64 ---LRAL-------GYDIGADDYHGFVHGRLPYDLIKPDPQLRNLLCSITQRKI---IFT 110
LR L G YH + ++ P R +L + + I T
Sbjct: 63 DYLLRRLDLPYNPKWISAGVIAYHN-----TKFAYLREVPGARKVLIRLKELGYELGIIT 117
Query: 111 NSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVA 170
+ + + RLE+ D F+ +I +F + KP K AL
Sbjct: 118 DGNPVKQWEKILRLELDDFFEHVII--------------SDFEGVKKPHPKIFKKALKAF 163
Query: 171 NVDPRHALFLDDNI-KNVTAGKALGLRTVLV--GKTVN-----VGEADYALENVNNLPQV 222
NV P AL + D + ++ K +G++TV GK ADY ++N+ +L +V
Sbjct: 164 NVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEV 223
Query: 223 V 223
+
Sbjct: 224 L 224
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 100/252 (39%), Gaps = 62/252 (24%)
Query: 6 NCLVFDLDDTLY---PSETGIAAAVK------------------RNIEGFLIEKCGFSET 44
+ FDLDDTL+ P+ G AA++ I L+++ +
Sbjct: 3 KLVTFDLDDTLWDTAPAIVGAEAALRDWLAEQAPKLGPVPVEHLWEIRSRLLDEDPSFKH 62
Query: 45 KASSLRVE-LFKAYGSTLAGLRALGYD------IGADDYHGFVHGRLPYDLI-KPDPQLR 96
+ S+LR LF A L GYD + + + F+HGR + + P L
Sbjct: 63 RISALRRRVLFHA-------LEDAGYDSDEAQQLADESFEVFLHGRHQVQIFPEVQPTLE 115
Query: 97 NLLCSITQRKIIFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLL 156
L + T I N+D ++RL +AD F +C E + +PD P L
Sbjct: 116 ILAKTFTLGVITNGNAD-------VRRLGLADYFAFALCAEDLG-----IGKPDPAPFL- 162
Query: 157 KPSMDAMKLALHVANVDPRHALFLDDNIKNVTAG-KALGLRTVLVGKTVNVGEADY---- 211
AL A VD A+ + D+ + AG + G+R + +AD
Sbjct: 163 --------EALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQGKAWDADRLPDA 214
Query: 212 ALENVNNLPQVV 223
+ N++ LP+V+
Sbjct: 215 EIHNLSQLPEVL 226
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 93 PQLRNLLCSITQRKII--FTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPD 150
P++ +L S+ + + T+SD A+ L L I D FD I E
Sbjct: 103 PEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGIKDLFDSITTSEEAG---------- 152
Query: 151 EFPVLLKPSMDAMKLALHVANVDPRHALFLDDN-IKNVTAGKALGLRTVLVGKTVNVGE- 208
KP +LAL A V A+++ DN +K+ K LG+ ++L+ + E
Sbjct: 153 ----FFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREF 208
Query: 209 ---ADYALENVNNLPQVVPEI 226
D+ + ++ + ++V E+
Sbjct: 209 WDKCDFIVSDLREVIKIVDEL 229
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 93 PQLRNLLCSITQRKII--FTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPD 150
P++ +L S+ + + T+SD A L L I D FD I E
Sbjct: 103 PEVVEVLKSLKGKYHVGXITDSDTEQAXAFLDALGIKDLFDSITTSEEAG---------- 152
Query: 151 EFPVLLKPSMDAMKLALHVANVDPRHALFLDDN-IKNVTAGKALGLRTVLVGKTVNVGE- 208
KP +LAL A V A+++ DN +K+ K LG ++L+ + E
Sbjct: 153 ----FFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGXTSILLDRKGEKREF 208
Query: 209 ---ADYALENVNNLPQVVPEI 226
D+ + ++ + ++V E+
Sbjct: 209 WDKCDFIVSDLREVIKIVDEL 229
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 75 DYHGFVHGRLPYDLIKPDPQLRNLLCSITQR--KIIFTNSDRNHAITCLKRLEIADCFDQ 132
DY + P DL+ P + LLC + KI +S RN A L+RL I D F
Sbjct: 80 DYQXLISKLTPEDLL---PGIGRLLCQLKNENIKIGLASSSRN-APKILRRLAIIDDFHA 135
Query: 133 IICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKA 192
I+ T+ KP D A +V P ++D ++A K+
Sbjct: 136 IVDPTTLAKG--------------KPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKS 181
Query: 193 LGLRTVLVGKTVNVGEADYALENVNNLP-QVVPEIW 227
G V VG+ AD + ++L +++ E W
Sbjct: 182 AGXFAVGVGQGQPXLGADLVVRQTSDLTLELLHEEW 217
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 157 KPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTV 198
KP+ +L L +A V P A+ +DD ++NV A +A+G V
Sbjct: 141 KPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 93 PQLRNLLCSITQRKII--FTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPD 150
P++ +L S+ + + T+SD + L L I D FD I E
Sbjct: 103 PEVVEVLKSLKGKYHVGXITDSDTEYLXAHLDALGIKDLFDSITTSEEAG---------- 152
Query: 151 EFPVLLKPSMDAMKLALHVANVDPRHALFLDDN-IKNVTAGKALGLRTVLVGKTVNVGE- 208
KP +LAL A V A+++ DN +K+ K LG ++L+ + E
Sbjct: 153 ----FFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGXTSILLDRKGEKREF 208
Query: 209 ---ADYALENVNNLPQVVPEI 226
D+ + ++ + ++V E+
Sbjct: 209 WDKCDFIVSDLREVIKIVDEL 229
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 76 YHGFVHG-RLPYDLIKPDP-QLRNLLCSITQRKIIFTNSDRNHAITCLKRL-EIADCFDQ 132
Y F HG + + ++P+ + + L R ++ +N++R H + EI D D
Sbjct: 78 YEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADH 137
Query: 133 IICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKA 192
I + + + KP + L P +F DDN N+
Sbjct: 138 IYLSQDLG--------------MRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQ 183
Query: 193 LGLRTVLV 200
LG+ ++LV
Sbjct: 184 LGITSILV 191
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 36/203 (17%)
Query: 7 CLVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRA 66
++FDLD TL S IA A+++ ++ + G E ++ K G G+RA
Sbjct: 3 VILFDLDGTLIDSAKDIALALEKTLK-----ELGLEEYYPDNVT----KYIG---GGVRA 50
Query: 67 LGYDIGADDYHG-----FVHGRL--PYDLIKPDPQLRNLLCSITQRKI---IFTNSDRNH 116
L + D + F L P KP P++ L ++ + + +N
Sbjct: 51 LLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEEL 110
Query: 117 AITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRH 176
+ L L ++ FD I+ +T +P PVL L + +P
Sbjct: 111 SKKILDILNLSGYFDLIVGGDTFGEK-----KPSPTPVLK---------TLEILGEEPEK 156
Query: 177 ALFLDDNIKNVTAGKALGLRTVL 199
AL + D ++ AGK G +T L
Sbjct: 157 ALIVGDTDADIEAGKRAGTKTAL 179
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 36/205 (17%)
Query: 5 FNCLVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGL 64
++FDLD TL S IA A+++ ++ + G E ++ K G G+
Sbjct: 3 LRVILFDLDGTLIDSAKDIALALEKTLK-----ELGLEEYYPDNVT----KYIG---GGV 50
Query: 65 RALGYDIGADDYHG-----FVHGRL--PYDLIKPDPQLRNLLCSITQRKI---IFTNSDR 114
RAL + D + F L P KP P++ L ++ + + +N
Sbjct: 51 RALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLE 110
Query: 115 NHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP 174
+ L L ++ FD I+ +T +P PVL L + +P
Sbjct: 111 ELSKKILDILNLSGYFDLIVGGDTFGEK-----KPSPTPVLK---------TLEILGEEP 156
Query: 175 RHALFLDDNIKNVTAGKALGLRTVL 199
AL + D ++ AGK G +T L
Sbjct: 157 EKALIVGDTDADIEAGKRAGTKTAL 181
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 25/206 (12%)
Query: 6 NCLVFDLDDTLYPSETGIAAAVKRNIEG---FLIEKCGFSETKASSLRVELFKAYGSTLA 62
+VFD TL+ ++ +A A +R G ++ + + + S LR L Y +
Sbjct: 3 KAVVFDAYGTLFDVQS-VADATERAYPGRGEYITQVWRQKQLEYSWLRA-LMGRYADFWS 60
Query: 63 GLR-ALGYDIGA----DDYHGFVHGRLPYDLIKPDPQLRNLLCSITQ-RKIIFTNSDRNH 116
R AL Y +G D Y+ + P P L + ++ I +N +
Sbjct: 61 VTREALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDM 120
Query: 117 AITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRH 176
+ + D FD +I + + KP D+ L V V P
Sbjct: 121 LQALVANAGLTDSFDAVISVDAKR--------------VFKPHPDSYALVEEVLGVTPAE 166
Query: 177 ALFLDDNIKNVTAGKALGLRTVLVGK 202
LF+ N +V K G V +
Sbjct: 167 VLFVSSNGFDVGGAKNFGFSVARVAR 192
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 155 LLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTVLVGKT 203
++KP K L P +FLDD N+ + LG+ T+LV T
Sbjct: 158 MVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT 206
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 72/206 (34%), Gaps = 25/206 (12%)
Query: 6 NCLVFDLDDTLYPSETGIAAAVKRNIEG---FLIEKCGFSETKASSLRVELFKAYGSTLA 62
+VFD TL+ ++ +A A +R G ++ + + + S LR L Y
Sbjct: 3 KAVVFDAYGTLFDVQS-VADATERAYPGRGEYITQVWRQKQLEYSWLRA-LMGRYADFWG 60
Query: 63 GLR-ALGYDIGA----DDYHGFVHGRLPYDLIKPDPQLRNLLCSITQ-RKIIFTNSDRNH 116
R AL Y +G D Y+ + P P L + ++ I +N +
Sbjct: 61 VTREALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDM 120
Query: 117 AITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRH 176
+ + D FD +I + + KP D+ L V V P
Sbjct: 121 LQALVANAGLTDSFDAVISVDAKR--------------VFKPHPDSYALVEEVLGVTPAE 166
Query: 177 ALFLDDNIKNVTAGKALGLRTVLVGK 202
LF+ N +V K G V +
Sbjct: 167 VLFVSSNGFDVGGAKNFGFSVARVAR 192
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 155 LLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRT 197
+ KP + K A +DP+ F+DD+ N + LG+ T
Sbjct: 171 MAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 154 VLLKPSMDAMKLALHVANVDPRHALFLDDNIK-NVTAGKALGLRTVLV 200
V+ KPS + AL + +D + + D I +V AGKA+G TVLV
Sbjct: 184 VVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLV 231
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 155 LLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRT 197
+ KP + K A +DP+ F+DD+ N + LG+ T
Sbjct: 171 MAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 74 DDYHGFVHGRLPYDLIKPDPQLRNLLCSITQRKI-IFTNSDRNHAITCLKRLEIADCFDQ 132
D+Y + P D+ P + LL + KI I S + L+R+ + FD
Sbjct: 78 DNYVKMIQDVSPADVY---PGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDA 134
Query: 133 IICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKA 192
I +P A+ KP+ D A H V P ++ L+D+ + A K
Sbjct: 135 I-----ADPAEVAAS---------KPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKD 180
Query: 193 LGLRTVLVGKTVNVGEADYALENVNNLP-QVVPEIWVSQS 231
G + VG+ ++G+ + + ++ + + E+W+ +
Sbjct: 181 SGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQKQ 220
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 15/118 (12%)
Query: 86 YDLIKPDPQLRNLLCSITQ-RKIIFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLS 144
Y+ + P P L + ++ I +N + + + D FD +I +
Sbjct: 89 YNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSFDAVISVDAKR---- 144
Query: 145 KATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTVLVGK 202
+ KP D+ L V V P LF+ N +V K G V +
Sbjct: 145 ----------VFKPHPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGFSVARVAR 192
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 155 LLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTVLVGKTVN 205
++KP L P +FLDD N+ + +G+ T+LV T +
Sbjct: 158 MIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNTAS 208
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 74 DDYHGFVHGRLPYDLIKPDPQLRNLLCSITQRKI-IFTNSDRNHAITCLKRLEIADCFDQ 132
D+Y + P D+ P + LL + KI I S + L+R+ + FD
Sbjct: 78 DNYVKMIQDVSPADVY---PGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDA 134
Query: 133 IICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKA 192
I +P A+ KP+ D A H V P ++ L+D+ + A K
Sbjct: 135 I-----ADPAEVAAS---------KPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKD 180
Query: 193 LGLRTVLVGKTVNVGEADYALENVNNLP-QVVPEIWVSQS 231
G + VG+ ++G+ + + ++ + + E+W+ +
Sbjct: 181 SGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQKQ 220
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 74 DDYHGFVHGRLPYDLIKPDPQLRNLLCSITQRKI-IFTNSDRNHAITCLKRLEIADCFDQ 132
D+Y + P D+ P + LL + KI I S + L+R+ + FD
Sbjct: 78 DNYVKMIQDVSPADVY---PGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDA 134
Query: 133 IICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKA 192
I +P A+ KP+ D A H V P ++ L+D+ + A K
Sbjct: 135 I-----ADPAEVAAS---------KPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKD 180
Query: 193 LGLRTVLVGKTVNVGEADYALENVNNLP-QVVPEIWVSQS 231
G + VG+ ++G+ + + ++ + + E+W+ +
Sbjct: 181 SGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQKQ 220
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 2 DSPFNCLVFDLDDTLYPSETGIAAAVKRNI 31
D+PF+ ++FDLD L SE GI A V +++
Sbjct: 25 DAPFDAVLFDLDGVLVESE-GIIAQVWQSV 53
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 93 PQLRNLLCSITQRKI-IFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDE 151
P + +LL + I I +S +AI L L I+D FD I N
Sbjct: 119 PGIESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFDFIADAGKCKNN--------- 169
Query: 152 FPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTVLVGKTVNVGEADY 211
KP + ++ NV+P++ + ++D + A + + +V VG N+ +A+
Sbjct: 170 -----KPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGNYENLKKANL 224
Query: 212 ALENVNNLP 220
+++ N L
Sbjct: 225 VVDSTNQLK 233
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 90 KPDPQLRNLLCSITQRKI---IFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKA 146
+P P L+ + R I T + R A L+ + +ADCF +
Sbjct: 70 RPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLGR-------- 121
Query: 147 TRPDEFPVLLKPSMDAMKLALHVANVDPRHALFLDDNIKNVTAGKALGLRTVLV 200
DE P P +KLA +V P + + D ++ G+A G RTVLV
Sbjct: 122 ---DEAPPKPHPG-GLLKLA-EAWDVSPSRXVXVGDYRFDLDCGRAAGTRTVLV 170
>pdb|3FZQ|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase (Yp_001086940.1) From Clostridium Difficile
630 At 2.10 A Resolution
pdb|3FZQ|B Chain B, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase (Yp_001086940.1) From Clostridium Difficile
630 At 2.10 A Resolution
Length = 274
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 5 FNCLVFDLDDTLYPSETGIAAAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGL 64
+ L+ D+D TL GI + K I + S+ + ++ G+ +
Sbjct: 5 YKLLILDIDGTLRDEVYGIPESAKHAIR--------LCQKNHCSVVICTGRSXGTIQDDV 56
Query: 65 RALGYD---IGADDYHGFVHGRLPYDLIKPDPQLRNLLCSITQRKIIFTNSDRNHAITCL 121
+LG D G +Y + HG L Y+ ++ ++C + +R++ F+ +
Sbjct: 57 LSLGVDGYIAGGGNYIQY-HGELLYNQSFNQRLIKEVVCLLKKREVAFSIESQEKVFXNQ 115
Query: 122 KRLEIADCFDQI 133
K EI + +Q+
Sbjct: 116 KAKEIFETXNQL 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,563,969
Number of Sequences: 62578
Number of extensions: 298785
Number of successful extensions: 668
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 29
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)