BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025191
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 57
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 4 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 58
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 259
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 68
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 9 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 63
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 220
+++R + +E++I EL ++F +A LV QGE+ RI+ N++ + +E A+
Sbjct: 21 IEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAK 74
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 68
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
S +++R + +E++I EL ++F +A LV QGE+ RI+ N++ + VE A
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226
+Q+R + L +E ++ EL +FN + LV +Q E ID+N++D +VE G K
Sbjct: 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64
Query: 227 LNS 229
+ S
Sbjct: 65 VKS 67
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 170 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGAL 223
R A+Q +E+ I ++ IF LA ++ QG++ I+ N++ + +VE A L
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQL 57
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224
S+M R +++ +E+ I ++ IF L ++ +QG++ I+ N++ +V+ A L
Sbjct: 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61
Query: 225 KYLN 228
+ N
Sbjct: 62 RAAN 65
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRID 206
++ R + +Q +E ++ EL +F ++TLV+ QGE+ RI+
Sbjct: 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIE 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.125 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,257,539
Number of Sequences: 62578
Number of extensions: 106139
Number of successful extensions: 171
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 17
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)