BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025191
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1
Length = 347
Score = 332 bits (852), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/261 (73%), Positives = 215/261 (82%), Gaps = 14/261 (5%)
Query: 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISS---DTTSHSTTVVDDLKNRLMSA 57
EIQELT VIKQ+I+ALNSA+VDLQL +S+ND G +S D ++HS TVVDDLK RLM
Sbjct: 95 EIQELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDT 154
Query: 58 TKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWA 117
TKEFK+VLTMRTEN+KVHESRRQLFSS ASK+S NPFVRQRPLA ++AA + S P PWA
Sbjct: 155 TKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAA--SESVPLPWA 212
Query: 118 NGSPSSS-QLFPRK-QDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQ 175
NGS SSS QL P K +GES PLLQQ Q QQQQ QQQMVPLQD+YMQ RAEAL
Sbjct: 213 NGSSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQ------QQQMVPLQDTYMQGRAEALH 266
Query: 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 235
VESTIHEL +IF QLAT+VSQQGEIAIRID+NM+DT+ANVEGAQ L +YLNSISSNRW
Sbjct: 267 TVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRW 326
Query: 236 LMIKIFFVLIFFLMIFLFFVA 256
LM+KIFFVLI FLMIFLFFVA
Sbjct: 327 LMMKIFFVLIAFLMIFLFFVA 347
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1
Length = 336
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 169/265 (63%), Gaps = 20/265 (7%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSR-NDG-ISSDTTSHSTTVVDDLKNRLMSAT 58
+EIQELT +I+ DIT LN A+ DLQ + N DG S D H T V DDLK RLM AT
Sbjct: 83 VEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGAT 142
Query: 59 KEFKEVLTMRTENLKVHESRRQLFSSTASKDS-----ANPFVRQRPLATRSAAASTSSSP 113
K+ ++VLT R+EN+K HE+R+QLFS+ + DS A P ++ S P
Sbjct: 143 KQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQP 202
Query: 114 --PPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRA 171
PP G+P SQL R+ E+ P Q + QQ VP Q++Y QSRA
Sbjct: 203 LLPPLNTGAPPGSQL-RRRSAIENAP----------SQQMEMSLLQQTVPKQENYSQSRA 251
Query: 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 231
AL +VES I EL IF QLAT+V+QQGE+AIRID+NMD+++ NVEGA+ ALL++L IS
Sbjct: 252 VALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRIS 311
Query: 232 SNRWLMIKIFFVLIFFLMIFLFFVA 256
SNRWLM+KIF V+I FL++FLFFVA
Sbjct: 312 SNRWLMMKIFAVIILFLIVFLFFVA 336
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2
Length = 467
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 128/240 (53%), Gaps = 26/240 (10%)
Query: 2 EIQELTAVIKQDITALNSAVVDLQLVS-NSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
EIQELT +IK D+ ALN + LQ +S + R SHS+ +V L+++L S + +
Sbjct: 237 EIQELTYIIKGDLNALNQQIARLQDISKDQRRHTNGKHLVSHSSNMVLALQSKLASMSTD 296
Query: 61 FKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGS 120
FK++L +RTENLK ++RR FS PLA + + ST+ +
Sbjct: 297 FKQILEVRTENLKQQKTRRDQFSQGPG-----------PLAAHTVSPSTAKQGSLLLSEE 345
Query: 121 PSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVEST 180
+ + D + PLL Q Q + D+Y+Q RAE +QN+EST
Sbjct: 346 NQAVSIDMGSSD--TTPLLSTQT------------QMAIYDDSDNYVQQRAETMQNIEST 391
Query: 181 IHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKI 240
I ELG IF QLA +V +Q EI RID N+ D N+E A G +LKY S+S NRWLMIKI
Sbjct: 392 IVELGGIFQQLAHMVKEQEEIVERIDTNVADAELNIEAAHGEILKYFQSVSKNRWLMIKI 451
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1
Length = 355
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 125/240 (52%), Gaps = 32/240 (13%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
+EI+ELT +IKQDI +LN + LQ ++ +HS T+V L+++L S + +
Sbjct: 130 VEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSND 189
Query: 61 FKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLA-TRSAAASTSSSPPPWANG 119
FK VL +RTENLK SRR+ FS V PLA + A+G
Sbjct: 190 FKSVLEVRTENLKQQRSRREQFSRAP--------VSALPLAPNHLGGGAVVLGAESRASG 241
Query: 120 SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVES 179
+ + R QQ Q++ QDSY+QSRA+ +QN+ES
Sbjct: 242 DVAIDMMDSRT-----------------------SQQLQLIDEQDSYIQSRADTMQNIES 278
Query: 180 TIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 239
TI ELG+IF QLA +V +Q E RIDEN+ +VE A +LKY S++SNRWLM+K
Sbjct: 279 TIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVK 338
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2
Length = 355
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 42/245 (17%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
+EI+ELT +IKQDI +LN + LQ ++ +HS T+V L+++L S + +
Sbjct: 130 VEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSND 189
Query: 61 FKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGS 120
FK VL +RTENLK +RR+ FS P++ A + P G
Sbjct: 190 FKSVLEVRTENLKQQRNRREQFSRA-------------PVSALPLAPNNLGGGPIVLGGE 236
Query: 121 PSSSQ------LFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEAL 174
+S+ + PR QQ Q++ QDSY+QSRA+ +
Sbjct: 237 SRASRDVAIDMMDPRT-----------------------SQQLQLIDEQDSYIQSRADTM 273
Query: 175 QNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 234
QN+ESTI ELG+IF QLA +V +Q E RIDEN+ +VE A +LKY S++SNR
Sbjct: 274 QNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNR 333
Query: 235 WLMIK 239
WLM+K
Sbjct: 334 WLMVK 338
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2
Length = 355
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 127/244 (52%), Gaps = 40/244 (16%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
+EI+ELT +IKQDI +LN + LQ ++ +HS T+V L+++L S + +
Sbjct: 130 VEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSND 189
Query: 61 FKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGS 120
FK VL +RTENLK SRR+ FS V PLA P G+
Sbjct: 190 FKSVLEVRTENLKQQRSRREQFSRAP--------VSALPLA-----------PNHLGGGA 230
Query: 121 PSSSQLFPRKQDGESQPLLQQQQHHQQQ-----QHHQQQQQQQMVPLQDSYMQSRAEALQ 175
+L + H + + QQ Q++ QDSY+QSRA+ +Q
Sbjct: 231 ----------------VVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQ 274
Query: 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 235
N+ESTI ELG+IF QLA +V +Q E RIDEN+ +VE A +LKY S++SNRW
Sbjct: 275 NIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334
Query: 236 LMIK 239
LM+K
Sbjct: 335 LMVK 338
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3
Length = 355
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 44/246 (17%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
+EI+ELT +IKQDI +LN + LQ ++ +HS T+V L+++L S + +
Sbjct: 130 VEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSND 189
Query: 61 FKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGS 120
FK VL +RTENLK +RR+ FS V PLA + P G+
Sbjct: 190 FKSVLEVRTENLKQQRNRREQFSRAP--------VSALPLAPNNLGGG------PIILGA 235
Query: 121 PSSSQ-------LFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEA 173
S + + PR QQ Q++ QDSY+QSRA+
Sbjct: 236 ESRASRDVAIDMMDPRT-----------------------SQQLQLIDEQDSYIQSRADT 272
Query: 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 233
+QN+ESTI ELG+IF QLA +V +Q E RIDEN+ +VE A +LKY S++SN
Sbjct: 273 MQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSN 332
Query: 234 RWLMIK 239
RWLM+K
Sbjct: 333 RWLMVK 338
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sed5 PE=3 SV=1
Length = 309
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 142/257 (55%), Gaps = 32/257 (12%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQ-LVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATK 59
+EIQELT IKQ +++LNS + LQ +V +RN + HS VV L+N L + +
Sbjct: 79 VEIQELTFQIKQSLSSLNSDIASLQQVVKGNRNK--PAQMNQHSENVVVSLQNSLANTSM 136
Query: 60 EFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG 119
FK++L +RT+N+K ++R + F +++S + ANP + + + + P P AN
Sbjct: 137 TFKDILEIRTQNMKASQNRTEKFVASSSMN-ANPLINS---GNSISPFADYNDPKPEANE 192
Query: 120 SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQ---DSYMQSRAEALQN 176
S L DG + + +QM L+ D+Y Q R ++QN
Sbjct: 193 DYLSLNL----GDGANT------------------RYEQMALLESQTDTYSQQRMSSIQN 230
Query: 177 VESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 236
+ESTI ELG IF+QLA +VS+Q E RID + DD ++N+ AQ ++K+ +SSNR L
Sbjct: 231 IESTITELGGIFSQLAQMVSEQRETVQRIDMHTDDIVSNIGSAQREIVKFYERMSSNRAL 290
Query: 237 MIKIFFVLIFFLMIFLF 253
+ KIF ++I F ++++
Sbjct: 291 LFKIFGIVIIFFLLWVL 307
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1
Length = 413
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 128/239 (53%), Gaps = 26/239 (10%)
Query: 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEF 61
+I L++++K DIT LN + LQ S R + + + H VV L+++L + K++
Sbjct: 183 QIDHLSSIVKSDITGLNKQIGQLQEFSKRRAGNMKNQNSGHIQLVVVGLQSKLANVGKDY 242
Query: 62 KEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSP 121
+ VL + TE +K ++RR FSS A+ P+ P ++G+
Sbjct: 243 QSVLEISTETMKAEKNRRDKFSSGAAV----------PMGL-----------PSSSSGAN 281
Query: 122 SSSQLF-PRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVEST 180
S+L +Q G S L Q QQ QQ+ L+ Y Q+R+ + +E +
Sbjct: 282 VRSKLLQDDEQHGSSSIALDMGALSNMQS--QQTMQQRDSSLE--YAQARSNTMATIEGS 337
Query: 181 IHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 239
I ELG IF+QLA+LVS+QGE+ RID N++DT N++ A L++YL +IS NRWLMI+
Sbjct: 338 ISELGQIFSQLASLVSEQGEMITRIDSNVEDTALNIDMAHSELVRYLQNISKNRWLMIQ 396
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SED5 PE=1 SV=1
Length = 340
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 18/246 (7%)
Query: 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTS-------HSTTVVDDLKNR 53
+EI EL+ +IK+ I A+ ++V L + + +G +S+ +S HS VV+ L +
Sbjct: 90 VEIAELSFLIKRKIYAIEQSLVQLSQLKKTDVNGNTSNQSSKQPSAVQHSKNVVNLLNTQ 149
Query: 54 LMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSP 113
+ + + FK+VL R ++ R Q ++ D+ + + + +A +T
Sbjct: 150 MKNISGSFKDVLEERQRLEMANKDRWQKLTT----DTGHAPADDQTQSNHAADLTT---- 201
Query: 114 PPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEA 173
+ N +P + L + + Q + Q ++ + + Y+Q R A
Sbjct: 202 --YNNSNPFMTSLLDESSEKNNNSSNQGELSFPQNDSQLMLMEEGQLS-NNVYLQERNRA 258
Query: 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 233
++ +ESTI E+GN+F QLA++V +QGE+ RID N+DD N+ GAQ LLKY + I SN
Sbjct: 259 VETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSN 318
Query: 234 RWLMIK 239
RWL K
Sbjct: 319 RWLAAK 324
>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TLG2 PE=1 SV=1
Length = 397
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 153 QQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDT 212
Q+QQQ ++Y++ R E + + + E+ IF ++ LV QG I RID N+++T
Sbjct: 233 QRQQQLHDTSAEAYLRERDEEITQLARGVLEVSTIFREMQDLVVDQGTIVDRIDYNLENT 292
Query: 213 MANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV 255
+ ++ A L K + R K+ +L ++ FFV
Sbjct: 293 VVELKSADKELNKATH--YQKRTQKCKVILLLTLCVIALFFFV 333
>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1
Length = 322
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 170 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229
R + +Q V ++++L I L+ LV QG I RID N+++ VE L K +
Sbjct: 232 REKEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERT 291
Query: 230 ISSNRWLMIKIFFVLIFFLMIFLFFV 255
+ V++ F+M+ L +
Sbjct: 292 QRHGGMVKCASVLVILCFIMLLLLIL 317
>sp|Q12241|VAM3_YEAST Syntaxin VAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VAM3 PE=1 SV=1
Length = 283
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225
Q R++ + + + + E+ IF+QL +LV +QGE IDEN+ N++ A L +
Sbjct: 194 QERSQQIGRIHTAVQEVNAIFHQLGSLVKEQGEQVTTIDENISHLHDNMQNANKQLTR 251
>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1
Length = 279
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 146 QQQQHHQQQQQQQMVPLQ------DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG 199
QQQ Q ++Q++V L ++ ++ R + ++ +E I ++ +F LA +V+ QG
Sbjct: 162 QQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQG 221
Query: 200 EIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIF 246
I I N+D++ A A L K + SN L +LIF
Sbjct: 222 NIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSSLT--CLLILIF 266
>sp|G3V7P1|STX12_RAT Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1
Length = 274
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 145 HQQQQHHQQQQQQQMVPLQD-SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAI 203
H++ Q Q+++ + QD ++ R A+Q +E+ I ++ IF LA ++ QG++
Sbjct: 158 HEEWNQMQSQEEEAAITEQDLELIKERETAIQQLEADILDVNQIFKDLAMMIHDQGDLID 217
Query: 204 RIDENMDDTMANVEGAQGAL 223
I+ N++ + +VE A L
Sbjct: 218 SIEANVESSEVHVERASDQL 237
>sp|P32854|PEP12_YEAST Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PEP12 PE=1 SV=2
Length = 288
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 222
Q + ++ R + + N+E I EL +F L ++V QQG + I+ N+ T N + A
Sbjct: 194 QQNLIEQRDQEISNIERGITELNEVFKDLGSVVQQQGVLVDNIEANIYTTSDNTQLASDE 253
Query: 223 LLKYLN-SISSNRW 235
L K + ++RW
Sbjct: 254 LRKAMRYQKRTSRW 267
>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3
Length = 325
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226
++ R ++ + +I +L IF L ++ +QG + RID N++ + E L K
Sbjct: 233 VEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKA 292
Query: 227 LNSISSNRWL 236
NR +
Sbjct: 293 EQYQKKNRKM 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,535,898
Number of Sequences: 539616
Number of extensions: 2888877
Number of successful extensions: 75752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 29419
Number of HSP's gapped (non-prelim): 17242
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)