Query 025191
Match_columns 256
No_of_seqs 223 out of 1185
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 2.8E-41 6.1E-46 291.1 25.2 229 1-256 79-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 6.9E-36 1.5E-40 259.1 19.7 201 2-255 101-301 (305)
3 KOG0810 SNARE protein Syntaxin 99.9 6.8E-24 1.5E-28 188.8 21.7 205 2-253 79-287 (297)
4 KOG0811 SNARE protein PEP12/VA 99.9 4E-22 8.7E-27 174.7 21.1 89 161-249 169-257 (269)
5 COG5325 t-SNARE complex subuni 99.9 2.7E-21 5.9E-26 167.0 18.7 195 2-253 78-276 (283)
6 COG5074 t-SNARE complex subuni 99.8 6.8E-17 1.5E-21 136.4 18.3 139 46-233 101-246 (280)
7 PF05739 SNARE: SNARE domain; 99.5 1.3E-13 2.7E-18 95.8 10.0 63 169-231 1-63 (63)
8 cd00193 t_SNARE Soluble NSF (N 99.4 4E-12 8.7E-17 86.8 8.3 59 168-226 2-60 (60)
9 smart00397 t_SNARE Helical reg 99.3 3.5E-11 7.5E-16 83.6 9.2 63 164-226 4-66 (66)
10 KOG3894 SNARE protein Syntaxin 99.1 4E-08 8.6E-13 87.2 20.0 98 155-253 211-312 (316)
11 KOG3202 SNARE protein TLG1/Syn 99.0 5.8E-08 1.3E-12 84.1 20.1 74 164-237 144-217 (235)
12 KOG3385 V-SNARE [Intracellular 98.4 3.3E-06 7.1E-11 64.6 9.3 83 168-252 32-115 (118)
13 PF00957 Synaptobrevin: Synapt 97.8 0.0011 2.3E-08 49.0 12.1 48 172-219 3-50 (89)
14 KOG0860 Synaptobrevin/VAMP-lik 97.5 0.0032 6.8E-08 48.6 11.3 40 172-211 29-68 (116)
15 KOG0810 SNARE protein Syntaxin 97.4 0.028 6.1E-07 50.7 18.7 196 2-254 86-291 (297)
16 PF09753 Use1: Membrane fusion 97.2 0.0092 2E-07 52.5 13.4 76 164-244 162-237 (251)
17 PF00804 Syntaxin: Syntaxin; 97.2 0.0015 3.2E-08 48.7 7.0 58 2-65 46-103 (103)
18 KOG1666 V-SNARE [Intracellular 97.1 0.16 3.5E-06 43.3 20.3 91 163-254 126-216 (220)
19 KOG0811 SNARE protein PEP12/VA 97.0 0.02 4.3E-07 50.9 13.5 95 156-254 171-265 (269)
20 cd00179 SynN Syntaxin N-termin 97.0 0.014 3E-07 46.9 11.3 85 2-86 45-129 (151)
21 smart00503 SynN Syntaxin N-ter 96.5 0.025 5.5E-07 43.2 9.2 70 2-72 47-116 (117)
22 COG5074 t-SNARE complex subuni 96.5 0.036 7.8E-07 47.8 10.3 57 173-229 179-235 (280)
23 COG5325 t-SNARE complex subuni 96.2 0.14 3.1E-06 45.2 13.0 94 162-255 178-274 (283)
24 KOG3065 SNAP-25 (synaptosome-a 95.6 0.065 1.4E-06 47.7 8.2 57 169-225 215-271 (273)
25 PF03908 Sec20: Sec20; InterP 95.0 0.9 1.9E-05 33.6 11.7 48 192-239 28-75 (92)
26 KOG3251 Golgi SNAP receptor co 94.5 2.7 5.8E-05 36.0 21.4 76 2-81 30-105 (213)
27 PF00957 Synaptobrevin: Synapt 92.6 3 6.6E-05 30.3 11.5 24 162-185 21-44 (89)
28 KOG2678 Predicted membrane pro 92.4 4.1 8.9E-05 35.1 12.2 65 162-229 148-212 (244)
29 KOG3208 SNARE protein GS28 [In 92.1 7.1 0.00015 33.6 20.1 60 4-69 54-113 (231)
30 KOG0809 SNARE protein TLG2/Syn 91.9 2.1 4.5E-05 38.4 10.2 94 162-255 201-297 (305)
31 PF14523 Syntaxin_2: Syntaxin- 90.5 3.2 7E-05 30.8 8.9 66 3-74 35-100 (102)
32 PF05478 Prominin: Prominin; 90.3 3.8 8.2E-05 42.1 11.9 69 168-242 353-421 (806)
33 KOG0859 Synaptobrevin/VAMP-lik 89.5 1.3 2.9E-05 37.4 6.5 34 172-205 125-158 (217)
34 PF09753 Use1: Membrane fusion 89.1 10 0.00022 33.3 12.3 76 176-254 167-244 (251)
35 KOG3202 SNARE protein TLG1/Syn 89.0 8.1 0.00018 33.8 11.3 80 154-237 141-220 (235)
36 PF09889 DUF2116: Uncharacteri 88.9 0.6 1.3E-05 31.8 3.4 13 239-251 41-53 (59)
37 PF10779 XhlA: Haemolysin XhlA 88.5 6.7 0.00014 27.5 9.4 52 198-252 18-69 (71)
38 PF12352 V-SNARE_C: Snare regi 88.3 6.2 0.00013 26.9 10.0 56 173-228 9-64 (66)
39 PF03904 DUF334: Domain of unk 88.2 16 0.00034 31.7 12.2 32 164-195 63-94 (230)
40 KOG0812 SNARE protein SED5/Syn 83.6 27 0.00059 31.4 11.8 94 162-255 210-307 (311)
41 PF09889 DUF2116: Uncharacteri 83.6 2.2 4.9E-05 29.0 4.0 35 220-254 25-59 (59)
42 PF14992 TMCO5: TMCO5 family 76.6 44 0.00096 30.0 10.9 57 166-222 124-180 (280)
43 KOG3850 Predicted membrane pro 71.5 91 0.002 29.3 12.3 41 36-76 78-118 (455)
44 PF02346 Vac_Fusion: Chordopox 69.9 31 0.00068 23.3 6.4 44 173-216 2-45 (57)
45 PF04102 SlyX: SlyX; InterPro 69.5 33 0.00072 23.8 6.9 49 172-220 4-52 (69)
46 PHA02844 putative transmembran 69.2 6.1 0.00013 28.1 3.0 8 233-240 46-53 (75)
47 PHA03054 IMV membrane protein; 66.8 7.4 0.00016 27.3 3.0 8 233-240 46-53 (72)
48 KOG0860 Synaptobrevin/VAMP-lik 66.2 60 0.0013 25.2 10.2 23 162-184 47-69 (116)
49 PHA02819 hypothetical protein; 65.8 7.7 0.00017 27.2 2.9 7 234-240 45-51 (71)
50 PF05957 DUF883: Bacterial pro 65.6 51 0.0011 24.1 11.1 61 177-237 7-76 (94)
51 PF00523 Fusion_gly: Fusion gl 64.9 10 0.00023 36.7 4.7 53 9-64 140-197 (490)
52 cd00193 t_SNARE Soluble NSF (N 63.9 36 0.00079 21.9 8.0 55 176-230 3-57 (60)
53 PF00804 Syntaxin: Syntaxin; 63.3 41 0.00088 24.2 6.8 51 2-58 53-103 (103)
54 PHA02975 hypothetical protein; 60.8 13 0.00029 26.0 3.3 9 232-240 41-49 (69)
55 PHA02675 ORF104 fusion protein 60.4 58 0.0013 23.7 6.7 36 181-216 39-74 (90)
56 PF07889 DUF1664: Protein of u 60.3 41 0.0009 26.5 6.5 43 174-216 70-112 (126)
57 KOG3065 SNAP-25 (synaptosome-a 60.0 28 0.00061 31.2 6.2 50 178-227 85-134 (273)
58 KOG0859 Synaptobrevin/VAMP-lik 59.3 34 0.00074 29.1 6.2 58 196-253 136-207 (217)
59 PHA02692 hypothetical protein; 56.4 20 0.00044 25.2 3.6 10 232-241 42-51 (70)
60 PF01519 DUF16: Protein of unk 53.0 99 0.0021 23.4 7.8 47 170-216 51-97 (102)
61 PRK00295 hypothetical protein; 52.7 76 0.0016 22.0 7.8 46 173-218 6-51 (68)
62 PF06143 Baculo_11_kDa: Baculo 51.8 30 0.00065 25.3 4.1 7 221-227 20-26 (84)
63 PLN03160 uncharacterized prote 50.8 9.5 0.00021 32.9 1.7 16 229-244 33-48 (219)
64 PF11166 DUF2951: Protein of u 50.2 1.1E+02 0.0023 23.0 11.2 43 171-213 10-52 (98)
65 COG4942 Membrane-bound metallo 48.3 2.1E+02 0.0046 27.2 10.2 61 166-226 39-99 (420)
66 PRK04325 hypothetical protein; 48.3 96 0.0021 21.9 7.7 45 174-218 11-55 (74)
67 PRK00736 hypothetical protein; 48.2 91 0.002 21.6 7.7 46 173-218 6-51 (68)
68 PF04505 Dispanin: Interferon- 48.0 9.8 0.00021 27.5 1.1 26 217-242 47-72 (82)
69 PRK02793 phi X174 lysis protei 47.8 96 0.0021 21.8 7.7 47 172-218 8-54 (72)
70 PF05546 She9_MDM33: She9 / Md 47.7 1.8E+02 0.0039 24.9 8.9 65 6-73 3-67 (207)
71 COG3630 OadG Na+-transporting 46.7 22 0.00049 25.9 2.8 19 237-255 12-30 (84)
72 PHA03240 envelope glycoprotein 46.0 19 0.00041 31.0 2.7 13 233-245 210-222 (258)
73 KOG2678 Predicted membrane pro 45.6 2.1E+02 0.0045 25.0 9.8 57 175-234 154-214 (244)
74 PF10267 Tmemb_cc2: Predicted 43.9 2.9E+02 0.0062 26.2 16.9 35 194-228 292-327 (395)
75 KOG1666 V-SNARE [Intracellular 43.6 57 0.0012 28.1 5.2 23 209-231 165-187 (220)
76 PRK14710 hypothetical protein; 42.9 31 0.00066 24.4 2.9 19 234-252 9-27 (86)
77 PRK02119 hypothetical protein; 42.6 1.2E+02 0.0026 21.4 8.0 48 171-218 8-55 (73)
78 PRK09793 methyl-accepting prot 42.4 2.7E+02 0.0059 26.9 10.5 55 164-218 428-482 (533)
79 KOG2546 Abl interactor ABI-1, 42.1 1.1E+02 0.0024 29.2 7.2 54 164-217 47-100 (483)
80 PF05961 Chordopox_A13L: Chord 41.8 35 0.00076 23.8 3.0 15 238-252 7-21 (68)
81 PF07432 Hc1: Histone H1-like 41.6 1.4E+02 0.003 23.3 6.5 45 184-228 2-46 (123)
82 PF04906 Tweety: Tweety; Inte 41.5 80 0.0017 29.8 6.5 15 232-246 183-197 (406)
83 PF06072 Herpes_US9: Alphaherp 41.5 45 0.00097 22.7 3.4 11 219-229 11-21 (60)
84 KOG0862 Synaptobrevin/VAMP-lik 41.3 2.3E+02 0.0051 24.4 8.8 35 174-208 136-170 (216)
85 PF08372 PRT_C: Plant phosphor 40.9 1.9E+02 0.0042 23.6 7.8 21 164-184 54-74 (156)
86 PRK15041 methyl-accepting chem 40.9 2.9E+02 0.0064 26.9 10.5 56 163-218 431-486 (554)
87 PF15102 TMEM154: TMEM154 prot 40.7 13 0.00028 30.1 0.8 21 235-255 58-78 (146)
88 PHA02650 hypothetical protein; 40.1 41 0.00088 24.2 3.2 21 233-253 44-64 (81)
89 PF09177 Syntaxin-6_N: Syntaxi 39.3 1.3E+02 0.0028 22.1 6.1 55 2-56 36-95 (97)
90 PRK15048 methyl-accepting chem 38.9 3.3E+02 0.0071 26.3 10.5 54 164-217 430-483 (553)
91 COG4068 Uncharacterized protei 38.7 34 0.00074 23.2 2.5 10 237-246 44-53 (64)
92 PHA02414 hypothetical protein 38.5 1.7E+02 0.0037 22.0 8.0 52 173-228 30-81 (111)
93 PF13937 DUF4212: Domain of un 38.3 25 0.00054 25.5 1.9 27 225-251 2-28 (81)
94 PF10046 BLOC1_2: Biogenesis o 38.2 1.7E+02 0.0036 21.8 9.7 55 155-213 21-79 (99)
95 PHA03049 IMV membrane protein; 38.2 43 0.00094 23.3 3.0 15 238-252 7-21 (68)
96 PHA03054 IMV membrane protein; 38.0 48 0.001 23.4 3.2 22 233-254 43-64 (72)
97 PF06422 PDR_CDR: CDR ABC tran 37.7 43 0.00092 25.2 3.3 19 218-236 32-50 (103)
98 TIGR01195 oadG_fam sodium pump 37.6 37 0.0008 24.6 2.8 16 239-254 11-26 (82)
99 PF00015 MCPsignal: Methyl-acc 37.2 2.3E+02 0.005 23.1 11.0 61 164-224 127-187 (213)
100 TIGR02833 spore_III_AB stage I 36.8 1.3E+02 0.0028 24.7 6.3 14 181-194 107-120 (170)
101 PHA02819 hypothetical protein; 36.7 53 0.0011 23.1 3.3 22 233-254 41-62 (71)
102 PHA02844 putative transmembran 36.7 52 0.0011 23.4 3.2 21 234-254 44-64 (75)
103 PRK10573 type IV pilin biogene 36.5 1.5E+02 0.0034 27.4 7.6 35 180-214 114-148 (399)
104 PRK08307 stage III sporulation 35.9 1.4E+02 0.003 24.6 6.4 14 181-194 108-121 (171)
105 smart00397 t_SNARE Helical reg 35.7 1.2E+02 0.0027 19.6 9.3 56 174-229 7-62 (66)
106 smart00502 BBC B-Box C-termina 35.2 1.8E+02 0.004 21.4 8.3 53 177-229 37-90 (127)
107 PF12911 OppC_N: N-terminal TM 35.0 79 0.0017 20.4 3.9 14 223-236 5-18 (56)
108 PF05377 FlaC_arch: Flagella a 35.0 1.4E+02 0.003 20.0 5.8 16 173-188 29-44 (55)
109 PF11598 COMP: Cartilage oligo 34.8 97 0.0021 19.9 4.0 25 176-200 5-29 (45)
110 PF04728 LPP: Lipoprotein leuc 34.6 1.4E+02 0.0031 20.0 6.9 29 201-229 18-46 (56)
111 COG1459 PulF Type II secretory 34.4 1.3E+02 0.0028 28.5 6.5 11 242-252 174-184 (397)
112 PF05366 Sarcolipin: Sarcolipi 34.2 64 0.0014 18.5 2.8 22 232-253 4-25 (31)
113 PRK11875 psbT photosystem II r 34.0 67 0.0014 18.9 2.9 17 239-255 7-23 (31)
114 PF04272 Phospholamban: Phosph 33.6 74 0.0016 20.4 3.3 12 242-253 37-48 (52)
115 PF14812 PBP1_TM: Transmembran 33.3 2.3 5E-05 30.8 -4.0 6 232-237 64-69 (81)
116 PF09548 Spore_III_AB: Stage I 33.2 1.4E+02 0.003 24.4 5.9 12 181-192 107-118 (170)
117 PF05478 Prominin: Prominin; 33.1 3.1E+02 0.0068 28.3 9.7 20 235-254 411-430 (806)
118 COG4327 Predicted membrane pro 32.6 72 0.0016 23.8 3.6 28 227-254 11-38 (101)
119 PRK00846 hypothetical protein; 32.3 1.9E+02 0.0041 20.7 7.8 48 172-219 13-60 (77)
120 PF04210 MtrG: Tetrahydrometha 31.8 1.8E+02 0.004 20.4 7.1 12 212-223 24-35 (70)
121 PF12751 Vac7: Vacuolar segreg 31.7 38 0.00083 31.7 2.5 7 237-243 304-310 (387)
122 COG4238 Murein lipoprotein [Ce 31.6 1.9E+02 0.004 20.7 5.4 31 200-230 39-69 (78)
123 PF10661 EssA: WXG100 protein 31.6 57 0.0012 26.3 3.2 14 198-211 80-93 (145)
124 PRK10404 hypothetical protein; 31.5 2.3E+02 0.0049 21.3 11.8 36 202-237 40-83 (101)
125 PF11945 WASH_WAHD: WAHD domai 31.4 3.1E+02 0.0068 24.8 8.3 56 169-228 22-77 (297)
126 PRK04406 hypothetical protein; 31.4 1.9E+02 0.0042 20.5 8.3 47 172-218 11-57 (75)
127 PF15188 CCDC-167: Coiled-coil 31.2 1.8E+02 0.0039 21.3 5.5 11 232-242 65-75 (85)
128 COG3736 VirB8 Type IV secretor 31.2 1E+02 0.0023 27.0 5.0 33 222-254 29-63 (239)
129 PF13253 DUF4044: Protein of u 30.9 47 0.001 20.1 2.0 16 239-254 14-29 (35)
130 PF05739 SNARE: SNARE domain; 30.5 1.6E+02 0.0035 19.3 9.9 55 167-221 6-60 (63)
131 PRK03814 oxaloacetate decarbox 30.5 56 0.0012 23.9 2.8 14 240-253 16-29 (85)
132 COG4640 Predicted membrane pro 30.1 67 0.0015 30.3 3.8 8 218-225 31-38 (465)
133 PF13314 DUF4083: Domain of un 29.4 84 0.0018 21.3 3.2 11 243-253 15-25 (58)
134 CHL00031 psbT photosystem II p 28.7 72 0.0016 19.0 2.4 17 239-255 7-23 (33)
135 PF09548 Spore_III_AB: Stage I 28.4 2.2E+02 0.0048 23.2 6.3 11 185-195 107-117 (170)
136 PF06295 DUF1043: Protein of u 28.4 2.9E+02 0.0062 21.5 7.8 49 176-224 33-81 (128)
137 PF03978 Borrelia_REV: Borreli 28.3 3.3E+02 0.0072 22.3 9.5 67 2-82 29-103 (160)
138 PF15183 MRAP: Melanocortin-2 28.0 55 0.0012 23.9 2.3 7 231-237 32-38 (90)
139 KOG3894 SNARE protein Syntaxin 27.6 4.8E+02 0.01 23.9 10.8 82 174-255 224-311 (316)
140 PF01405 PsbT: Photosystem II 27.3 1.2E+02 0.0027 17.5 3.2 16 240-255 8-23 (29)
141 PHA02849 putative transmembran 27.2 83 0.0018 22.6 3.0 18 237-254 18-35 (82)
142 COG4499 Predicted membrane pro 27.1 84 0.0018 29.6 3.9 15 229-243 211-225 (434)
143 PF03904 DUF334: Domain of unk 26.5 2.8E+02 0.0061 24.1 6.7 11 217-227 130-140 (230)
144 COG4068 Uncharacterized protei 26.5 1.3E+02 0.0028 20.5 3.7 30 220-249 30-59 (64)
145 PF11239 DUF3040: Protein of u 26.4 98 0.0021 22.1 3.4 19 201-219 10-28 (82)
146 PF01601 Corona_S2: Coronaviru 26.2 25 0.00054 34.8 0.3 64 4-76 258-321 (610)
147 TIGR02956 TMAO_torS TMAO reduc 25.8 7.5E+02 0.016 25.5 11.2 20 7-26 79-98 (968)
148 KOG1693 emp24/gp25L/p24 family 25.7 3.6E+02 0.0077 23.1 7.1 17 169-185 128-144 (209)
149 PHA02689 ORF051 putative membr 25.5 92 0.002 24.5 3.3 23 232-254 27-49 (128)
150 PF12325 TMF_TATA_bd: TATA ele 25.3 96 0.0021 24.2 3.4 29 163-191 87-115 (120)
151 COG5346 Predicted membrane pro 25.0 3.4E+02 0.0075 21.3 6.6 10 239-248 95-104 (136)
152 TIGR01294 P_lamban phospholamb 24.9 1.2E+02 0.0027 19.4 3.2 8 244-251 39-46 (52)
153 PF06789 UPF0258: Uncharacteri 24.5 31 0.00068 28.0 0.6 8 219-226 115-122 (159)
154 PRK10132 hypothetical protein; 24.1 3.3E+02 0.0071 20.8 11.3 38 201-238 46-90 (108)
155 PF07332 DUF1469: Protein of u 24.1 3.1E+02 0.0068 20.6 6.4 6 219-224 23-28 (121)
156 PF06738 DUF1212: Protein of u 23.9 1.6E+02 0.0035 24.1 4.9 26 212-237 80-106 (193)
157 PRK11637 AmiB activator; Provi 23.7 6.2E+02 0.013 23.8 12.5 60 166-225 69-128 (428)
158 PF02439 Adeno_E3_CR2: Adenovi 23.6 1.2E+02 0.0027 18.7 2.9 16 237-252 6-21 (38)
159 PF14715 FixP_N: N-terminal do 23.6 1.3E+02 0.0029 19.7 3.3 19 236-254 23-41 (51)
160 PF01102 Glycophorin_A: Glycop 23.3 1E+02 0.0023 24.1 3.3 9 236-244 66-74 (122)
161 PRK08307 stage III sporulation 23.3 2.6E+02 0.0055 23.0 5.8 15 221-235 139-153 (171)
162 PF06072 Herpes_US9: Alphaherp 23.3 1.4E+02 0.003 20.3 3.4 8 230-237 27-34 (60)
163 PF07127 Nodulin_late: Late no 23.2 74 0.0016 20.9 2.1 16 238-253 5-20 (54)
164 PHA02967 hypothetical protein; 23.2 1E+02 0.0022 24.2 3.2 23 232-254 24-46 (128)
165 PF01102 Glycophorin_A: Glycop 22.7 1.1E+02 0.0023 24.0 3.2 10 237-246 71-80 (122)
166 PHA03046 Hypothetical protein; 22.7 4E+02 0.0086 21.2 7.1 53 164-216 76-128 (142)
167 PRK10299 PhoPQ regulatory prot 22.4 1.2E+02 0.0027 19.5 2.9 12 231-242 2-13 (47)
168 TIGR01149 mtrG N5-methyltetrah 22.2 2.9E+02 0.0063 19.4 7.2 11 202-212 21-31 (70)
169 TIGR02833 spore_III_AB stage I 22.0 2.8E+02 0.0061 22.7 5.8 15 221-235 138-152 (170)
170 PF06198 DUF999: Protein of un 21.9 49 0.0011 25.5 1.1 20 230-249 82-101 (143)
171 PF00429 TLV_coat: ENV polypro 21.6 3.6E+02 0.0078 26.7 7.4 35 168-202 431-465 (561)
172 PF06692 MNSV_P7B: Melon necro 21.6 1E+02 0.0022 20.7 2.5 8 247-254 24-31 (61)
173 smart00806 AIP3 Actin interact 20.9 7.5E+02 0.016 23.7 12.1 66 8-73 253-331 (426)
174 PF10960 DUF2762: Protein of u 20.5 87 0.0019 22.1 2.1 12 241-252 15-26 (71)
175 PF13038 DUF3899: Domain of un 20.2 1.2E+02 0.0026 21.9 3.0 14 198-211 23-36 (92)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-41 Score=291.08 Aligned_cols=229 Identities=45% Similarity=0.664 Sum_probs=186.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 1 ~eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
|||.+||+.||+++..+++.|..|+.+++..+..++.+...|++|||..|+++|++++++|+++++.|++++|+.+.|++
T Consensus 79 VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~d 158 (311)
T KOG0812|consen 79 VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRD 158 (311)
T ss_pred hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHH
Confidence 69999999999999999999999999986555434466799999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCcccccCcccccccccCCCCCCCCCCCC----CCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHH
Q 025191 81 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG----SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQ 156 (256)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q 156 (256)
+|....++....|... .++ .+.||..- ...+.++...+.+|.+. + +++|
T Consensus 159 kfs~~~a~~~a~p~~n-------~~a-----~~~~~~~l~~~~~~~sq~~~~ln~gd~~~---~------------qqqQ 211 (311)
T KOG0812|consen 159 KFSASYASLNANPVSN-------SAA-----RLHPLKLLVDPKDEASQDVESLNMGDSSN---P------------QQQQ 211 (311)
T ss_pred HhccccCCCCCcccCc-------ccc-----cCCchhhhcCchhhcccccccccccCCCC---C------------HHHH
Confidence 9997654432122210 000 01111100 00111111112222221 1 3677
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchH
Q 025191 157 QQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 236 (256)
Q Consensus 157 ~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~ 236 (256)
++++++.+.|+++|.+++.+||.+|.||++||.+||+||.+|||++.|||+||+.+..||++|..+|.|++.+.++|||+
T Consensus 212 m~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwL 291 (311)
T KOG0812|consen 212 MALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWL 291 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 025191 237 MIKIFFVLIFFLMIFLFFVA 256 (256)
Q Consensus 237 ~~~i~~vliv~~l~~i~~~~ 256 (256)
+++||+|+|||+++|++|+|
T Consensus 292 mvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 292 MVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-36 Score=259.07 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
+||.||.+|++.|++|++.|+.+....+. .++.+.....|++.++..+|+.+|..||..|+.|+++|+.++++...
T Consensus 101 ~IE~ltq~Itqll~~cqk~iq~~~a~~n~----~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~ 176 (305)
T KOG0809|consen 101 EIEELTQEITQLLQKCQKLIQRLSASLNQ----LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQE 176 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccc
Confidence 79999999999999999999999886542 35678889999999999999999999999999999999999987766
Q ss_pred hcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHhhch
Q 025191 82 FSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVP 161 (256)
Q Consensus 82 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~ql~~ 161 (256)
|..... |. + ..+|+++++ ...++++|+++++
T Consensus 177 ~e~~~~-----~~-------------------------------~---~~~dd~d~~----------~~~~qe~ql~~~e 207 (305)
T KOG0809|consen 177 YEDSLD-----NT-------------------------------V---DLPDDEDFS----------DRTFQEQQLMLFE 207 (305)
T ss_pred hhhhcc-----cc-------------------------------c---cCcchhhhh----------hhhHHHHHHHHHh
Confidence 553211 10 0 001122222 2345567777788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIF 241 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~ 241 (256)
.++.++.+|++||.++.++|.||++||+||+.||.+||++|||||||++++..+|+.|.++|.||..|||++++|+|+.+
T Consensus 208 ~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~ 287 (305)
T KOG0809|consen 208 NNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILM 287 (305)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHh
Q 025191 242 FVLIFFLMIFLFFV 255 (256)
Q Consensus 242 ~vliv~~l~~i~~~ 255 (256)
+++++|++|+++++
T Consensus 288 L~l~ii~llvllil 301 (305)
T KOG0809|consen 288 LTLLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887777764
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.8e-24 Score=188.83 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
+++.++..|++.-..+...|..+.+....... +......+++.+=...+..+|.++...|+.++..|.++-|.+-.|+-
T Consensus 79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql 158 (297)
T KOG0810|consen 79 KLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQL 158 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888776443322 13345556666666777799999999999999999999988777665
Q ss_pred hhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHh--
Q 025191 81 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQ-- 158 (256)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~q-- 158 (256)
....+...+. ..+ +..-++|++ . .+++--++
T Consensus 159 ~i~~~~~~~d-e~i----------e~~ie~g~~-----------~-------------------------~f~~~~i~~~ 191 (297)
T KOG0810|consen 159 FIVGGEETTD-EEI----------EEMIESGGS-----------E-------------------------VFTQKAIQDR 191 (297)
T ss_pred hhhCCCcCCh-HHH----------HHHHHCCCh-----------H-------------------------HHHHHHHHHh
Confidence 5443312110 000 000000100 0 00100000
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHH
Q 025191 159 -MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 237 (256)
Q Consensus 159 -l~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~ 237 (256)
........+++|+.+|.+||++|.||++||.||+.||..||+|||+||+||..|.++|++|..++++|.+|++++|||.
T Consensus 192 ~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k 271 (297)
T KOG0810|consen 192 GQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWK 271 (297)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhce
Confidence 1123466789999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 238 IKIFFVLIFFLMIFLF 253 (256)
Q Consensus 238 ~~i~~vliv~~l~~i~ 253 (256)
|+++++++++++++++
T Consensus 272 ~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 272 IIIIIILIIIIVVLVV 287 (297)
T ss_pred eeeehHHHHHHHHHhh
Confidence 5444444444444443
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4e-22 Score=174.75 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHH
Q 025191 161 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKI 240 (256)
Q Consensus 161 ~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i 240 (256)
+.+..++++|.++|++||..|.||++||+||+.||++||++||.||+||+.|..||+.|..+|.||.+|++++++|.|++
T Consensus 169 ~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~l 248 (269)
T KOG0811|consen 169 EYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCIL 248 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999998877665555
Q ss_pred HHHHHHHHH
Q 025191 241 FFVLIFFLM 249 (256)
Q Consensus 241 ~~vliv~~l 249 (256)
++|++++.+
T Consensus 249 l~v~~~v~l 257 (269)
T KOG0811|consen 249 LLVGGPVGL 257 (269)
T ss_pred hHHHHHHHH
Confidence 444433333
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.88 E-value=2.7e-21 Score=167.00 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
+|.+|+.-|.+++.+|.+.++..-...+... .......-.|..-....+.+.-+..||+-+..|.+.+..
T Consensus 78 ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~---~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~------- 147 (283)
T COG5325 78 EIDELSKKVNQDLQRCEKILKTKYKNLQSSF---LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN------- 147 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh-------
Confidence 6899999999999999999885544322211 011223334556666788888899999999998887611
Q ss_pred hcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHhh--
Q 025191 82 FSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQM-- 159 (256)
Q Consensus 82 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~ql-- 159 (256)
..... .|+- ....... + + ..+ +..+.+|..+
T Consensus 148 --~~~~~---~~l~-----eee~e~~------------------~------~-~~~------------sq~~lqq~~l~~ 180 (283)
T COG5325 148 --KNNDQ---HPLE-----EEEDEES------------------L------S-SLG------------SQQTLQQQGLSN 180 (283)
T ss_pred --ccccc---Cchh-----hhhhhhh------------------h------h-ccc------------hhhHHHHhhhhh
Confidence 11000 1110 0000000 0 0 001 1112222222
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHH
Q 025191 160 --VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 237 (256)
Q Consensus 160 --~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~ 237 (256)
++++..++.+|+++|.+|++.|.||++||.||+++|.+||++|||||+|++++..|++.|++||.||..|+|+.++|-
T Consensus 181 ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~ 260 (283)
T COG5325 181 EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCR 260 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccch
Confidence 234555689999999999999999999999999999999999999999999999999999999999999998776665
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 238 IKIFFVLIFFLMIFLF 253 (256)
Q Consensus 238 ~~i~~vliv~~l~~i~ 253 (256)
++++++++||++++.+
T Consensus 261 ~~~Llil~vv~lfv~l 276 (283)
T COG5325 261 FYLLLILLVVLLFVSL 276 (283)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4444444455444443
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.76 E-value=6.8e-17 Score=136.43 Aligned_cols=139 Identities=20% Similarity=0.302 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCC
Q 025191 46 VVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQ 125 (256)
Q Consensus 46 Vv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (256)
-....+.+|.++-..||.+...|-+..+.+..|...+..+.++. ..+- ++.
T Consensus 101 Qae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATE--deve---------~aI------------------ 151 (280)
T COG5074 101 QAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATE--DEVE---------AAI------------------ 151 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccch--HHHH---------HHh------------------
Confidence 34456789999999999999999999888766655555443332 1110 000
Q ss_pred CCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025191 126 LFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMV-------PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQ 198 (256)
Q Consensus 126 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~ql~-------~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Q 198 (256)
.|+.++ ..+ .|-++- ..-...++.|+.+|.+||++|.||.+||++|++||.+|
T Consensus 152 ------nd~nG~------------qvf--sqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq 211 (280)
T COG5074 152 ------NDVNGQ------------QVF--SQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQ 211 (280)
T ss_pred ------cccchH------------HHH--HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 001100 000 111110 12355789999999999999999999999999999999
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccC
Q 025191 199 GEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 233 (256)
Q Consensus 199 ge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~ 233 (256)
.+++|.|+.|++.++.||+.|+..+.+|.+|.++.
T Consensus 212 ~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 212 QENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred cchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999997643
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.52 E-value=1.3e-13 Score=95.84 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Q 025191 169 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 231 (256)
Q Consensus 169 eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~ 231 (256)
+|++++..|+.++.+|++||.+|+.+|.+|+++||+|++||+.|..++.+|+.+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999999999999999999999999999999999875
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.36 E-value=4e-12 Score=86.79 Aligned_cols=59 Identities=42% Similarity=0.566 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
++|++++..|+.+|.+|++||.+|+.+|.+|+++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999875
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.28 E-value=3.5e-11 Score=83.56 Aligned_cols=63 Identities=37% Similarity=0.498 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
..++.+|++++..|+..+.++++||.+|+.+|.+|+++||+|+++++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 557899999999999999999999999999999999999999999999999999999999875
No 10
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4e-08 Score=87.19 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=81.1
Q ss_pred HHHhhchh-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 025191 155 QQQQMVPL-QD---SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 230 (256)
Q Consensus 155 ~Q~ql~~~-~~---~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~ 230 (256)
.|.|+++. +. ....+-.+++++|++.+.|+..|-.-++++|-+|..-||.|-+++..|..||++|++++++|.+..
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~ 290 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhc
Confidence 45556653 22 233555689999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCchHHHHHHHHHHHHHHHHHH
Q 025191 231 SSNRWLMIKIFFVLIFFLMIFLF 253 (256)
Q Consensus 231 ~~~r~~~~~i~~vliv~~l~~i~ 253 (256)
.+.|.|+ .++++++-|+++|+-
T Consensus 291 ~~~r~~~-lf~llvlsf~lLFld 312 (316)
T KOG3894|consen 291 GGLRVFL-LFFLLVLSFSLLFLD 312 (316)
T ss_pred ccchhHH-HHHHHHHHHHHHHHh
Confidence 7777654 456666777777764
No 11
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=5.8e-08 Score=84.05 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 237 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~ 237 (256)
..++++.++.+..|+.+|.-++.+-..++..+.+|+.+||..++.++.+...+..+.+.|.+..+..+++++||
T Consensus 144 qqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~ 217 (235)
T KOG3202|consen 144 QQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWC 217 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 45677888999999999999999999999999999999999999999999999999999999999666665444
No 12
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.3e-06 Score=64.59 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHH-HHHHHHHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI-KIFFVLIF 246 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~-~i~~vliv 246 (256)
+|-++.++.+.+.|.-|+.+--+++..|..|..++|.+++..+.+.....+....++...+. ++++++| .+++.+++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 55667899999999999999999999999999999999999999999999999999887776 4444333 44444444
Q ss_pred HHHHHH
Q 025191 247 FLMIFL 252 (256)
Q Consensus 247 ~~l~~i 252 (256)
|+|+++
T Consensus 110 ~fi~~~ 115 (118)
T KOG3385|consen 110 FFILWV 115 (118)
T ss_pred HHHhhe
Confidence 444443
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.75 E-value=0.0011 Score=49.00 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 219 (256)
+.+.++...+.++.++..+=-..+.+-|+-|+.+++..+.-......-
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F 50 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQF 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHH
Confidence 467889999999999988888888899999999998766555444433
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0032 Score=48.59 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
+.++.++..+.|+.+|+++=-.-|-|-|+-||.+++-.+.
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~ 68 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH
Confidence 5567777888889999998888899999999999876543
No 15
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.028 Score=50.69 Aligned_cols=196 Identities=11% Similarity=0.153 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
+|..++..|+..+..+.+............. .+.........+-..|...+.+.-..+.+..+.|.++++.+-.-...
T Consensus 86 ~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~--~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~ 163 (297)
T KOG0810|consen 86 EIRRRARKIKTKLKALEKENEADETQNRSSA--GLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGG 163 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 5678899999999999999988887543222 34444455555557788877777777777777877777766555433
Q ss_pred -h---------cccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhh
Q 025191 82 -F---------SSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHH 151 (256)
Q Consensus 82 -f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (256)
- ...++.. -+.. .++.+. .
T Consensus 164 ~~~~de~ie~~ie~g~~~---~f~~----------------------------~~i~~~-~------------------- 192 (297)
T KOG0810|consen 164 EETTDEEIEEMIESGGSE---VFTQ----------------------------KAIQDR-G------------------- 192 (297)
T ss_pred CcCChHHHHHHHHCCChH---HHHH----------------------------HHHHHh-h-------------------
Confidence 1 1111110 0100 000000 0
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Q 025191 152 QQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 231 (256)
Q Consensus 152 ~~~~Q~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~ 231 (256)
...+-+.-+..--..+..-++.|.+|++--.++..|...=+.+|..=...+.+-.++|+.+..++++|. ++.+..+
T Consensus 193 ~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaR 268 (297)
T KOG0810|consen 193 QAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKAR 268 (297)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh
Confidence 000001111233446788889999999999999999999999999999999999999999999999994 4444455
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 232 ~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
+.+|++|++++|+++++++++++
T Consensus 269 K~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 269 KWKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred hceeeeehHHHHHHHHHhhhhcc
Confidence 55666666666666666666543
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.24 E-value=0.0092 Score=52.52 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFV 243 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~~v 243 (256)
....++-.+++-.+.+++.+ -...++..+.+-...|++.+..++.....+......|....+ .+.+ ||.|+++++
T Consensus 162 ~~~QE~L~~em~~La~~LK~---~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~-~~~~-~~~~~~i~~ 236 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKE---NSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS-KSWG-CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-HHHHHHHHH
Confidence 33333444455555554444 445567799999999999999999999999999999987643 2233 655544443
Q ss_pred H
Q 025191 244 L 244 (256)
Q Consensus 244 l 244 (256)
+
T Consensus 237 v 237 (251)
T PF09753_consen 237 V 237 (251)
T ss_pred H
Confidence 3
No 17
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=97.21 E-value=0.0015 Score=48.69 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVL 65 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q 65 (256)
+|+.||.+|++.+..|+..|+.|+...... ....+..++++..+..+..++..|++++
T Consensus 46 el~~l~~~i~~~~~~~~~~lk~l~~~~~~~------~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 46 ELDELTDEIKQLFQKIKKRLKQLSKDNEDS------EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 789999999999999999999999985411 2235566677777777777777777654
No 18
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.16 Score=43.32 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHH
Q 025191 163 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFF 242 (256)
Q Consensus 163 ~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~~ 242 (256)
+.+-+..-.+.++.=.+...|--+|-.+|-.-++.|.+.|.+--+-.-++..|+.++.+-|..-.++.-.++|.+..+++
T Consensus 126 nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~ 205 (220)
T KOG1666|consen 126 NTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIA 205 (220)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556777777788888888899999999999999999999999999999999998888777778887655444
Q ss_pred HHHHHHHHHHHH
Q 025191 243 VLIFFLMIFLFF 254 (256)
Q Consensus 243 vliv~~l~~i~~ 254 (256)
+ .+++++++|+
T Consensus 206 ~-l~~~il~ilY 216 (220)
T KOG1666|consen 206 L-LVLAILLILY 216 (220)
T ss_pred H-HHHHHHHHHH
Confidence 3 3333344443
No 19
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.02 Score=50.85 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=75.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCch
Q 025191 156 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 235 (256)
Q Consensus 156 Q~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~ 235 (256)
+..+.++.++-+++-+.+|..+..-..+|+.|..+=+.+|..=.+-|+.-..||+.+..++.+|...=+++.+ .+|
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k----~~~ 246 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARK----KKC 246 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chh
Confidence 4445566777889999999999999999999999999999999999999999999999999999876544433 336
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025191 236 LMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 236 ~~~~i~~vliv~~l~~i~~ 254 (256)
+.++++++++.++.+.++.
T Consensus 247 ~ll~v~~~v~lii~l~i~~ 265 (269)
T KOG0811|consen 247 ILLLVGGPVGLIIGLIIAG 265 (269)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 6655555555555544443
No 20
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=97.00 E-value=0.014 Score=46.89 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
+++.+...|+..+..+...|+.|...........+....+...+.+..|..+|.++...|+.+|..|.++.|.+-.|...
T Consensus 45 ~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~ 124 (151)
T cd00179 45 ELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999998876543211113456788899999999999999999999999999999999998876
Q ss_pred hcccc
Q 025191 82 FSSTA 86 (256)
Q Consensus 82 f~~~~ 86 (256)
...+.
T Consensus 125 i~~~~ 129 (151)
T cd00179 125 ITGGE 129 (151)
T ss_pred HcCCC
Confidence 65543
No 21
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=96.54 E-value=0.025 Score=43.22 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENL 72 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~l 72 (256)
+++.+...|......+...|..|......... .+....+...+.+..|..+|.++...|+.+|..|.++.
T Consensus 47 ~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~-~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 47 KLERLIDDIKRLAKEIRAKLKELEKENLENRA-SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35667777777777788887777765432221 23456778899999999999999999999999998765
No 22
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.036 Score=47.82 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
+++.=++.|..|-.+..+|..|..+=.+++-.=..||+....++..|......+..+
T Consensus 179 Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h 235 (280)
T COG5074 179 EVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGH 235 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhh
Confidence 455555555555555555555555555555555555555555555555555554433
No 23
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.14 Score=45.20 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHccc---CchHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISS---NRWLMI 238 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~---~r~~~~ 238 (256)
-..+.......=+.+-.+.|..|..=-.+++.+..+=|.+|..=-.-|+.-..|++....+++-|.+--.+ .++-.=
T Consensus 178 l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~ 257 (283)
T COG5325 178 LSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTK 257 (283)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhc
Confidence 34444444444477888899999999999999999999999999999999999999999999999876432 234444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025191 239 KIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~~ 255 (256)
.+-+++++++++|.+|+
T Consensus 258 k~~~~~Llil~vv~lfv 274 (283)
T COG5325 258 KCRFYLLLILLVVLLFV 274 (283)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 56555555555555554
No 24
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.065 Score=47.74 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 169 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 169 eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
+-+..+.+|...+..|..|--+++..|..|.+.||+|+++++.....|...++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 667789999999999999999999999999999999999999999999999988865
No 25
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.04 E-value=0.9 Score=33.59 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHH
Q 025191 192 ATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 239 (256)
Q Consensus 192 ~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~ 239 (256)
...+.+|.+.|....+........+..+.+-+.+..+..+.-|++++.
T Consensus 28 ~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~ 75 (92)
T PF03908_consen 28 LQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFF 75 (92)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345567888888888888888888888888888887777777776543
No 26
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=2.7 Score=36.02 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
++..+...|..+|..+...++.+...++...+ ..++....+ +..|...+..+-...+...+.+..+++.-++|...
T Consensus 30 e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp-~~rq~~rlr---~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~l 105 (213)
T KOG3251|consen 30 EVSAVENSIQRSIDQYASRCQRLDVLVSKEPP-KSRQAARLR---VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVEL 105 (213)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC-CcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56777788888888888888888887765433 444555554 77777788888788888877777777666665544
No 27
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.57 E-value=3 Score=30.34 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELG 185 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~ 185 (256)
++-..+-+|.+.+..++....+|.
T Consensus 21 ~Ni~~ll~Rge~L~~L~~kt~~L~ 44 (89)
T PF00957_consen 21 ENIDKLLERGEKLEELEDKTEELS 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH
Confidence 344444555555555555444443
No 28
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=92.41 E-value=4.1 Score=35.14 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
.++.+-++-.+.+-.+.++..+-.--| ..-+.+-.+.+..-+--++............++++.+.
T Consensus 148 ~q~~lQeeLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 148 DQDTLQEELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHh
Confidence 334444444455555555544433333 33555666666666666666666666666666665554
No 29
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=7.1 Score=33.64 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025191 4 QELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRT 69 (256)
Q Consensus 4 e~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~ 69 (256)
..++.+|...+..+..-.+.+..-. .++....+..--+.--+..|++.+..|+.+...+.
T Consensus 54 ks~~~eie~LLeql~~vndsm~~~~------~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~ 113 (231)
T KOG3208|consen 54 KSLENEIEGLLEQLQDVNDSMNDCA------SSPANSAAVMHTLQRHREILQDYTQEFRRIRSNID 113 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888887777711 12222222222233336689999999999877743
No 30
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=2.1 Score=38.42 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-c--cCchHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI-S--SNRWLMI 238 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~-~--~~r~~~~ 238 (256)
.+....+.-++.+.+=|+.|..|.+=-.||+++..+=+.||-.=-.-|+...-||+.....++.|.+-- | ..++---
T Consensus 201 ~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~ 280 (305)
T KOG0809|consen 201 QQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK 280 (305)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence 444455666677888899999999999999999999999998888889999999999999999998764 3 2334344
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025191 239 KIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~~ 255 (256)
++.++++++++||++++
T Consensus 281 k~~~i~~L~l~ii~llv 297 (305)
T KOG0809|consen 281 KMKVILMLTLLIIALLV 297 (305)
T ss_pred ceEehHHHHHHHHHHHH
Confidence 66666666666666654
No 31
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=90.50 E-value=3.2 Score=30.78 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 025191 3 IQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKV 74 (256)
Q Consensus 3 Ie~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~ 74 (256)
|..+...+...+..+...|..|.... ..............-|..-+..+...|+.+|..|.+..+.
T Consensus 35 i~~~~~~~~~l~k~~~~~l~~l~~~~------~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 35 IHQLIQKTNQLIKEISELLKKLNSLS------SDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666666666666666666666651 1224456667777888888888889999999888887654
No 32
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=90.28 E-value=3.8 Score=42.14 Aligned_cols=69 Identities=16% Similarity=0.329 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFF 242 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~~ 242 (256)
++-...+..+.+.+..+.+-+.+++..+..+ ....+..-...+...+.......+++..| ||..+++++
T Consensus 353 ~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~lil~ 421 (806)
T PF05478_consen 353 NQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVGLILC 421 (806)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHH
Confidence 3444456677777777777777777777666 66667777777777777777777777666 555544433
No 33
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=1.3 Score=37.42 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRI 205 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~I 205 (256)
..+.++...|.|+..++-+==.-|-+-||-|+-+
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 5677888888888887777666666777655444
No 34
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=89.13 E-value=10 Score=33.28 Aligned_cols=76 Identities=9% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc--cCchHHHHHHHHHHHHHHHHHH
Q 025191 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS--SNRWLMIKIFFVLIFFLMIFLF 253 (256)
Q Consensus 176 ~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~--~~r~~~~~i~~vliv~~l~~i~ 253 (256)
+|...|..|..-.++=+... +..|..=..-++.+...++.-...|..+..+-+ .++++.|..++++++++++||+
T Consensus 167 ~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 167 DLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56666655555444433332 334444344577778888888888888776654 3456667667766666666664
Q ss_pred H
Q 025191 254 F 254 (256)
Q Consensus 254 ~ 254 (256)
.
T Consensus 244 m 244 (251)
T PF09753_consen 244 M 244 (251)
T ss_pred H
Confidence 3
No 35
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=8.1 Score=33.75 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccC
Q 025191 154 QQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 233 (256)
Q Consensus 154 ~~Q~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~ 233 (256)
+.|.+++..+++-+..-+..|..+...-..+++=-.+=+.++.+.+.-+|+.+.-++.....+..-+. .+..+ +..
T Consensus 141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~---~~s~~-~~~ 216 (235)
T KOG3202|consen 141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR---MASQC-SQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhccc-cch
Confidence 44566777888888888888888888888888777777889999999999999999999999988876 44444 344
Q ss_pred chHH
Q 025191 234 RWLM 237 (256)
Q Consensus 234 r~~~ 237 (256)
.-++
T Consensus 217 ~~il 220 (235)
T KOG3202|consen 217 CAIL 220 (235)
T ss_pred hHHH
Confidence 4444
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=88.88 E-value=0.6 Score=31.83 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 025191 239 KIFFVLIFFLMIF 251 (256)
Q Consensus 239 ~i~~vliv~~l~~ 251 (256)
++++++++|++++
T Consensus 41 i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 41 IFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.54 E-value=6.7 Score=27.50 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=27.1
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHH
Q 025191 198 QGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFL 252 (256)
Q Consensus 198 Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~~vliv~~l~~i 252 (256)
..+-++.+|.+.......+...+.+|.+-.. ..+|++-.+++.++.+++.|+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~---n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKS---NTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543322 345666566666555555444
No 38
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=88.34 E-value=6.2 Score=26.91 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 228 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~ 228 (256)
.+..-...+.+.-++-.+....+..|++.|.++...+..+..++..+..-|.+-.+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 57777788888888899999999999999999999999999999999988876544
No 39
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=88.17 E-value=16 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLV 195 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV 195 (256)
++-...|.++.++|-.++.+-..=|.+-+.-+
T Consensus 63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~ 94 (230)
T PF03904_consen 63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKV 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888777777665443
No 40
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.64 E-value=27 Score=31.39 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----cccCchHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS----ISSNRWLM 237 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~----~~~~r~~~ 237 (256)
.+...+.+-++-+++=..++..|..=-.+|+.+..+=..||-.=++-+....+||+.+.-.+.-|..- --+-..-.
T Consensus 210 qQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNR 289 (311)
T KOG0812|consen 210 QQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNR 289 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccch
Confidence 34556667777788888889999999999999999999999999999999999999999888877543 33444567
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025191 238 IKIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 238 ~~i~~vliv~~l~~i~~~ 255 (256)
++++=|..|++++|++|+
T Consensus 290 wLmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 290 WLMVKIFGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888898886
No 41
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=83.62 E-value=2.2 Score=29.03 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHH
Q 025191 220 QGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 220 ~~eL~kA~~~~~~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
.++..+..+..++.+++++.++++++++.+++..|
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555677888877777766666666543
No 42
>PF14992 TMCO5: TMCO5 family
Probab=76.56 E-value=44 Score=29.95 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 222 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~e 222 (256)
.+.....++.+++.+...++++-.|=+..+..=.+.|.+|++..+...-+.+-+..+
T Consensus 124 ~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 124 SCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888888888888877778899998777666555544333
No 43
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=71.51 E-value=91 Score=29.31 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=36.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 025191 36 SSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHE 76 (256)
Q Consensus 36 ~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~ 76 (256)
.+++..+-.+|..--+.|-+......++.++.|-++||.-+
T Consensus 78 Dk~Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 78 DKQQVARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred chhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888899999999999999999999999999999876
No 44
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=69.89 E-value=31 Score=23.30 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 216 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v 216 (256)
.++.++.-+..|-..|.....--...++.++|+|.+++.-..++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35678888888999999999999999999999999998876554
No 45
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.51 E-value=33 Score=23.82 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 220 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 220 (256)
..|..+|..+.-.-....+|+..|..|...||++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888888888888888999999999999888877777666543
No 46
>PHA02844 putative transmembrane protein; Provisional
Probab=69.21 E-value=6.1 Score=28.05 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.3
Q ss_pred CchHHHHH
Q 025191 233 NRWLMIKI 240 (256)
Q Consensus 233 ~r~~~~~i 240 (256)
..|.++++
T Consensus 46 ~~~~~~ii 53 (75)
T PHA02844 46 SSTKIWIL 53 (75)
T ss_pred hhHHHHHH
Confidence 34444333
No 47
>PHA03054 IMV membrane protein; Provisional
Probab=66.79 E-value=7.4 Score=27.34 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.1
Q ss_pred CchHHHHH
Q 025191 233 NRWLMIKI 240 (256)
Q Consensus 233 ~r~~~~~i 240 (256)
..|.++++
T Consensus 46 ~~~~~~ii 53 (72)
T PHA03054 46 WGWYWLII 53 (72)
T ss_pred chHHHHHH
Confidence 33444333
No 48
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.21 E-value=60 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHEL 184 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el 184 (256)
++-+-+-||.+.+.+|..-...|
T Consensus 47 ~NV~KVlER~ekL~~L~drad~L 69 (116)
T KOG0860|consen 47 ENVEKVLERGEKLDELDDRADQL 69 (116)
T ss_pred HhHHHHHHhcchHHHHHHHHHHH
Confidence 44555566666666555544444
No 49
>PHA02819 hypothetical protein; Provisional
Probab=65.83 E-value=7.7 Score=27.24 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=2.7
Q ss_pred chHHHHH
Q 025191 234 RWLMIKI 240 (256)
Q Consensus 234 r~~~~~i 240 (256)
.|.++++
T Consensus 45 ~~~~~ii 51 (71)
T PHA02819 45 LRYYLII 51 (71)
T ss_pred hHHHHHH
Confidence 3444333
No 50
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=65.55 E-value=51 Score=24.10 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHcccCchHH
Q 025191 177 VESTIHELGNIFNQLATLVSQQG-EIAIRIDENMDDTMANVEGAQGALL--------KYLNSISSNRWLM 237 (256)
Q Consensus 177 Ie~~i~el~~if~~l~~lV~~Qg-e~id~Id~nv~~a~~~v~~g~~eL~--------kA~~~~~~~r~~~ 237 (256)
|+.-+.++.++....+....+.. +.-+++...++.+...+......+. .+..|.+.++|.-
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s 76 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQS 76 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 33334444444444444433332 3335555555555555554443332 2445566777764
No 51
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=64.87 E-value=10 Score=36.68 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCcch-----hhhHHHHHHHHHHHHHHHhHHHHHH
Q 025191 9 VIKQDITALNSAVVDLQLVSNSRNDGISSDT-----TSHSTTVVDDLKNRLMSATKEFKEV 64 (256)
Q Consensus 9 ~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~-----~~~~~nVv~~L~~~l~~~s~~Fr~~ 64 (256)
+++.-...+--.|+.+|.+.+..- .++- ..+...+.-.|...|-+++..|..-
T Consensus 140 ~l~~g~~~~~~av~~lQd~IN~~i---~Pain~l~C~v~~~~lgi~L~~YltElttvFg~q 197 (490)
T PF00523_consen 140 ELTNGLSQLAVAVQALQDFINNEI---IPAINQLSCEVADNQLGISLNQYLTELTTVFGPQ 197 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecchHHHHHHHHHHHHHHHHHHHh---hhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444444555556554321 2222 2333444556777888888888763
No 52
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=63.90 E-value=36 Score=21.89 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 025191 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 230 (256)
Q Consensus 176 ~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~ 230 (256)
+-.+.+..|.....++..+..+=+.+|..=..-++....+++.+...+.+|.+.-
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888777777777777778888888888888777776653
No 53
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=63.35 E-value=41 Score=24.23 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSAT 58 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s 58 (256)
+|..+...|+..|..+..... ... ... .+..+.+...|.+.+|..+|+++.
T Consensus 53 ~i~~~~~~~~~~lk~l~~~~~--~~~--~~~--~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 53 EIKQLFQKIKKRLKQLSKDNE--DSE--GEE--PSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHH--CTT----SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhc--ccC--CCcHHHHHHHHHHHHHHHHHHHHC
Confidence 688899999999999999977 211 122 356889999999999999999863
No 54
>PHA02975 hypothetical protein; Provisional
Probab=60.82 E-value=13 Score=25.96 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=3.5
Q ss_pred cCchHHHHH
Q 025191 232 SNRWLMIKI 240 (256)
Q Consensus 232 ~~r~~~~~i 240 (256)
+..|.++++
T Consensus 41 ~~~~~~~ii 49 (69)
T PHA02975 41 SSLSIILII 49 (69)
T ss_pred CchHHHHHH
Confidence 334444333
No 55
>PHA02675 ORF104 fusion protein; Provisional
Probab=60.37 E-value=58 Score=23.72 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 025191 181 IHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 216 (256)
Q Consensus 181 i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v 216 (256)
+..|-.+|+.+..-...=++.|+|+|.+.+.-..++
T Consensus 39 L~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 39 LVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444447788888888899999999999988765544
No 56
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.31 E-value=41 Score=26.48 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 216 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v 216 (256)
|..+...+.+..++-+.+...|.+=++-+++|.+.++..+.-|
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444433333
No 57
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.01 E-value=28 Score=31.15 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025191 178 ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 227 (256)
Q Consensus 178 e~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~ 227 (256)
-..+.+....-..-..++.+|++.|++|+.+++........+.+.|..-.
T Consensus 85 L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 85 LKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33445555666677788999999999999999999888888887775543
No 58
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.28 E-value=34 Score=29.13 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHhhHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHcccCc-----hHHHHHHHHHHHHHHHHHH
Q 025191 196 SQQGEIAIRIDENMD---------DTMANVEGAQGALLKYLNSISSNR-----WLMIKIFFVLIFFLMIFLF 253 (256)
Q Consensus 196 ~~Qge~id~Id~nv~---------~a~~~v~~g~~eL~kA~~~~~~~r-----~~~~~i~~vliv~~l~~i~ 253 (256)
+--|-|+++||.=.+ +..+|+..-....++..++-+... ++.+++++++++++.+.+.
T Consensus 136 evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~ 207 (217)
T KOG0859|consen 136 EVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVA 207 (217)
T ss_pred HHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHH
Confidence 345677777776543 233455555555555444433333 3334444444444444433
No 59
>PHA02692 hypothetical protein; Provisional
Probab=56.36 E-value=20 Score=25.17 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=4.1
Q ss_pred cCchHHHHHH
Q 025191 232 SNRWLMIKIF 241 (256)
Q Consensus 232 ~~r~~~~~i~ 241 (256)
+..|..++++
T Consensus 42 ~~~~~~~ii~ 51 (70)
T PHA02692 42 GVPWTTVFLI 51 (70)
T ss_pred CcchHHHHHH
Confidence 3445443333
No 60
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=53.02 E-value=99 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 025191 170 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 216 (256)
Q Consensus 170 R~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v 216 (256)
..+.|..+...+.-.++-.+.+...+.-||+.|+.|..-+.....++
T Consensus 51 qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 51 QGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666677777777777776655554443
No 61
>PRK00295 hypothetical protein; Provisional
Probab=52.65 E-value=76 Score=22.03 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
.|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888889999999999988777776665554
No 62
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=51.84 E-value=30 Score=25.29 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 025191 221 GALLKYL 227 (256)
Q Consensus 221 ~eL~kA~ 227 (256)
.+|.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 4555444
No 63
>PLN03160 uncharacterized protein; Provisional
Probab=50.79 E-value=9.5 Score=32.87 Aligned_cols=16 Identities=6% Similarity=-0.210 Sum_probs=6.7
Q ss_pred HcccCchHHHHHHHHH
Q 025191 229 SISSNRWLMIKIFFVL 244 (256)
Q Consensus 229 ~~~~~r~~~~~i~~vl 244 (256)
+.+..+||.|++.+++
T Consensus 33 r~~~~~c~~~~~a~~l 48 (219)
T PLN03160 33 RRNCIKCCGCITATLL 48 (219)
T ss_pred cccceEEHHHHHHHHH
Confidence 3334445444443333
No 64
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=50.17 E-value=1.1e+02 Score=22.95 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 025191 171 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 213 (256)
Q Consensus 171 ~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~ 213 (256)
+..+..||..-..+..=+.++-.=++.|....+..|-+++.-.
T Consensus 10 e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 10 EWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 3456666666666666666666677888888888888888743
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.34 E-value=2.1e+02 Score=27.23 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
-+.+-..++.+.++.|.+..+-+..|...+.++.+-|..|+..+..+...+..-.+.+...
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3455567888888888888889999999999999999999888888777776666655543
No 66
>PRK04325 hypothetical protein; Provisional
Probab=48.32 E-value=96 Score=21.91 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888889999999999888777666655544
No 67
>PRK00736 hypothetical protein; Provisional
Probab=48.21 E-value=91 Score=21.63 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
.|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777888888889999999998888777766665544
No 68
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.03 E-value=9.8 Score=27.54 Aligned_cols=26 Identities=12% Similarity=-0.048 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcccCchHHHHHHH
Q 025191 217 EGAQGALLKYLNSISSNRWLMIKIFF 242 (256)
Q Consensus 217 ~~g~~eL~kA~~~~~~~r~~~~~i~~ 242 (256)
.....+...|.++.++.|++.++-++
T Consensus 47 ~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 47 RYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 33444566777776666666533333
No 69
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.83 E-value=96 Score=21.78 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
..|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777788888888999999888888776666555543
No 70
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=47.70 E-value=1.8e+02 Score=24.93 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025191 6 LTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLK 73 (256)
Q Consensus 6 LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk 73 (256)
++..+...+.+++..|.......+.-.+ -....--+.-+..+-.+|...-..-+..-..|...+.
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TG---Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~ 67 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTG---YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQ 67 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666555544322 1222222333444455555555555555555555443
No 71
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=46.75 E-value=22 Score=25.88 Aligned_cols=19 Identities=11% Similarity=0.287 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025191 237 MIKIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 237 ~~~i~~vliv~~l~~i~~~ 255 (256)
.+.+.++.+||++++++++
T Consensus 12 ~L~vlGmg~VflfL~iLi~ 30 (84)
T COG3630 12 TLMVLGMGFVFLFLSILIY 30 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777765
No 72
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.03 E-value=19 Score=31.02 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=6.5
Q ss_pred CchHHHHHHHHHH
Q 025191 233 NRWLMIKIFFVLI 245 (256)
Q Consensus 233 ~r~~~~~i~~vli 245 (256)
..-..++|++|++
T Consensus 210 aaH~~WIiilIIi 222 (258)
T PHA03240 210 AAHIAWIFIAIII 222 (258)
T ss_pred cchHhHHHHHHHH
Confidence 4455555555443
No 73
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=45.63 E-value=2.1e+02 Score=24.98 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHcccCc
Q 025191 175 QNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL----NSISSNR 234 (256)
Q Consensus 175 ~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~----~~~~~~r 234 (256)
++|..++..|..-|+..+.-. +..|+.=..-+..+..-++....-|..+. +|-++++
T Consensus 154 eeLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 456666666665555543322 23333322334445555555555555543 4445554
No 74
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.91 E-value=2.9e+02 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHH-HHHHHHHH
Q 025191 194 LVSQQGEIAIRIDENMDDTMANVEGAQ-GALLKYLN 228 (256)
Q Consensus 194 lV~~Qge~id~Id~nv~~a~~~v~~g~-~eL~kA~~ 228 (256)
|..+=-|-...|+++++..+..|.+-- ..++.+..
T Consensus 292 ~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 292 MAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334556677788888888888887655 34444433
No 75
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.57 E-value=57 Score=28.07 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Q 025191 209 MDDTMANVEGAQGALLKYLNSIS 231 (256)
Q Consensus 209 v~~a~~~v~~g~~eL~kA~~~~~ 231 (256)
++.|.+........|.|+.+--+
T Consensus 165 L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 165 LERARERLRETDANLGKSRKILT 187 (220)
T ss_pred HHHHHHHHHhchhhhhHHHHHHH
Confidence 44455555555555555554443
No 76
>PRK14710 hypothetical protein; Provisional
Probab=42.86 E-value=31 Score=24.36 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 025191 234 RWLMIKIFFVLIFFLMIFL 252 (256)
Q Consensus 234 r~~~~~i~~vliv~~l~~i 252 (256)
.++++.+|.++++++++++
T Consensus 9 skm~ififaiii~v~lcv~ 27 (86)
T PRK14710 9 SKMIIFIFAIIIIVVLCVI 27 (86)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3556666776666666654
No 77
>PRK02119 hypothetical protein; Provisional
Probab=42.59 E-value=1.2e+02 Score=21.38 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 171 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 171 ~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
+..|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777778888888888888889999999998888777666555544
No 78
>PRK09793 methyl-accepting protein IV; Provisional
Probab=42.41 E-value=2.7e+02 Score=26.94 Aligned_cols=55 Identities=9% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
...+.+-...+.+|...+.++.+...+++..+.+|...++.|..+++....-++.
T Consensus 428 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~ 482 (533)
T PRK09793 428 SKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667888999999999999999999999999999888877665544443
No 79
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=42.13 E-value=1.1e+02 Score=29.18 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 217 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 217 (256)
.++-+.|..+.+.++..-..++.|..+.-.|+..|...|.+.|.+|......|.
T Consensus 47 ~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 47 AALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 445567788899999999999999999999999999999999999988777664
No 80
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=41.79 E-value=35 Score=23.81 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025191 238 IKIFFVLIFFLMIFL 252 (256)
Q Consensus 238 ~~i~~vliv~~l~~i 252 (256)
++++||.++.++++.
T Consensus 7 Li~ICVaii~lIlY~ 21 (68)
T PF05961_consen 7 LIIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 81
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=41.63 E-value=1.4e+02 Score=23.26 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025191 184 LGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 228 (256)
Q Consensus 184 l~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~ 228 (256)
|.+.|..|..|+..=..-++.+|-....|..++..+..+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 445566666666544444556888899999999999999988543
No 82
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=41.53 E-value=80 Score=29.82 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.4
Q ss_pred cCchHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIF 246 (256)
Q Consensus 232 ~~r~~~~~i~~vliv 246 (256)
..||+..+.++++.+
T Consensus 183 ~yRw~~~~~lL~l~l 197 (406)
T PF04906_consen 183 YYRWLAYLGLLILDL 197 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346776544443333
No 83
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=41.49 E-value=45 Score=22.71 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 025191 219 AQGALLKYLNS 229 (256)
Q Consensus 219 g~~eL~kA~~~ 229 (256)
|..-|.+--++
T Consensus 11 A~~FL~RvGr~ 21 (60)
T PF06072_consen 11 ATEFLRRVGRQ 21 (60)
T ss_pred HHHHHHHHhHH
Confidence 33444443333
No 84
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.34 E-value=2.3e+02 Score=24.41 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 208 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~n 208 (256)
+.++.....++..++..==..|..-|+.++..+.-
T Consensus 136 ~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~ 170 (216)
T KOG0862|consen 136 LLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSM 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhh
Confidence 44444444444444444444444555555555443
No 85
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=40.89 E-value=1.9e+02 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHEL 184 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el 184 (256)
...++.|.+.++.+...++.+
T Consensus 54 ~~~lr~Rydrlr~va~rvQ~v 74 (156)
T PF08372_consen 54 PDSLRMRYDRLRSVAGRVQNV 74 (156)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887766544
No 86
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=40.85 E-value=2.9e+02 Score=26.91 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 163 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 163 ~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
....+.+-.+.+.+|...+.++.+++.+++.-+.+|...++.|..++.....-++.
T Consensus 431 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 431 GSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677999999999999999999999999999999998887665544333
No 87
>PF15102 TMEM154: TMEM154 protein family
Probab=40.74 E-value=13 Score=30.08 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 025191 235 WLMIKIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 235 ~~~~~i~~vliv~~l~~i~~~ 255 (256)
-++++|=+|+++++|++++|+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHh
Confidence 344444445666666666554
No 88
>PHA02650 hypothetical protein; Provisional
Probab=40.13 E-value=41 Score=24.24 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 025191 233 NRWLMIKIFFVLIFFLMIFLF 253 (256)
Q Consensus 233 ~r~~~~~i~~vliv~~l~~i~ 253 (256)
..|..+.+++++++++++.++
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l 64 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVAL 64 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 345666666655444444443
No 89
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=39.28 E-value=1.3e+02 Score=22.11 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCcchhhhHHHHHHHHHHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-----GISSDTTSHSTTVVDDLKNRLMS 56 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-----~~~~~~~~~~~nVv~~L~~~l~~ 56 (256)
++..++.+++..+..+.-.|..|...+.--.. ..+..+..-+...+..++.++.+
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46678888888888888888888886543111 02344555555555555555544
No 90
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=38.93 E-value=3.3e+02 Score=26.35 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 217 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 217 (256)
...+.+-.+.+.+|...+.++.+.+.+++.-+.+|...++.|..+++.....++
T Consensus 430 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 430 SVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566788899999999999999999999999999999888776665554
No 91
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=38.68 E-value=34 Score=23.24 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 025191 237 MIKIFFVLIF 246 (256)
Q Consensus 237 ~~~i~~vliv 246 (256)
++++|+++++
T Consensus 44 ~~~~~li~aL 53 (64)
T COG4068 44 MILMFLILAL 53 (64)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 92
>PHA02414 hypothetical protein
Probab=38.55 E-value=1.7e+02 Score=22.01 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 228 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~ 228 (256)
.-.+++..+.||..|...|..-+.-+.|.--.|-+.++.-... ...|....+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~----i~aL~~~n~ 81 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEK----ISALAESNK 81 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHH----HHHHHhccc
Confidence 3456788888888888888887877888777777777665444 444544433
No 93
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=38.26 E-value=25 Score=25.52 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=17.5
Q ss_pred HHHHHcccCchHHHHHHHHHHHHHHHH
Q 025191 225 KYLNSISSNRWLMIKIFFVLIFFLMIF 251 (256)
Q Consensus 225 kA~~~~~~~r~~~~~i~~vliv~~l~~ 251 (256)
++..|-+++..++.+++++.+++.+.+
T Consensus 2 ~~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676777777766666666555555
No 94
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.23 E-value=1.7e+02 Score=21.77 Aligned_cols=55 Identities=9% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHhhchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 025191 155 QQQQMVPLQDSYMQSRAEA----LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 213 (256)
Q Consensus 155 ~Q~ql~~~~~~~~~eR~~~----i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~ 213 (256)
....+++..+.....|..+ +..++..+.+|++.+..+...+ ..||.||..|..-.
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l----~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL----QQIDQIEEQVTELE 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444555444444444444 5566666777777776665544 57888888776543
No 95
>PHA03049 IMV membrane protein; Provisional
Probab=38.17 E-value=43 Score=23.27 Aligned_cols=15 Identities=27% Similarity=0.458 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 025191 238 IKIFFVLIFFLMIFL 252 (256)
Q Consensus 238 ~~i~~vliv~~l~~i 252 (256)
++++||.++.++++.
T Consensus 7 l~iICVaIi~lIvYg 21 (68)
T PHA03049 7 LVIICVVIIGLIVYG 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 96
>PHA03054 IMV membrane protein; Provisional
Probab=38.01 E-value=48 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 025191 233 NRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 233 ~r~~~~~i~~vliv~~l~~i~~ 254 (256)
+++..+.+++++++++++.++|
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHH
Confidence 4456666676665555544443
No 97
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=37.69 E-value=43 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcccCchH
Q 025191 218 GAQGALLKYLNSISSNRWL 236 (256)
Q Consensus 218 ~g~~eL~kA~~~~~~~r~~ 236 (256)
.|..-|..+..|..+.+|-
T Consensus 32 ~G~~YL~~~y~y~~sh~WR 50 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWR 50 (103)
T ss_pred eHHHHHhhhccccccchhh
Confidence 4667787788887777775
No 98
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=37.65 E-value=37 Score=24.58 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 239 KIFFVLIFFLMIFLFF 254 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~ 254 (256)
.++++.+||+++.+++
T Consensus 11 ~v~GM~~VF~fL~lLi 26 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLI 26 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555444443
No 99
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=37.20 E-value=2.3e+02 Score=23.12 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 224 (256)
...+.+-.+.+..|...+.++...+.+++.-+.+|...+..|...+.....-++.....+.
T Consensus 127 ~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 187 (213)
T PF00015_consen 127 SESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSE 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667888888888888888888888888888888888776555555444444333
No 100
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=36.80 E-value=1.3e+02 Score=24.71 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 025191 181 IHELGNIFNQLATL 194 (256)
Q Consensus 181 i~el~~if~~l~~l 194 (256)
...|.++...|+..
T Consensus 107 ~eiL~~lG~~LG~~ 120 (170)
T TIGR02833 107 KEILLQFGKTLGES 120 (170)
T ss_pred HHHHHHHHHHHCcC
Confidence 44455555555554
No 101
>PHA02819 hypothetical protein; Provisional
Probab=36.73 E-value=53 Score=23.12 Aligned_cols=22 Identities=5% Similarity=0.282 Sum_probs=12.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 025191 233 NRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 233 ~r~~~~~i~~vliv~~l~~i~~ 254 (256)
+++..+.+++++++++++.++|
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~ 62 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIF 62 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHH
Confidence 3455666666665555544443
No 102
>PHA02844 putative transmembrane protein; Provisional
Probab=36.67 E-value=52 Score=23.43 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 025191 234 RWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 234 r~~~~~i~~vliv~~l~~i~~ 254 (256)
++....+++++++++++.++|
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~~ 64 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATFL 64 (75)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 345666666665555544443
No 103
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=36.53 E-value=1.5e+02 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 025191 180 TIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 214 (256)
Q Consensus 180 ~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~ 214 (256)
.+.+...+|-++-.....-||.--++++-.+....
T Consensus 114 al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 114 ALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 33333333433333233345444444444444433
No 104
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=35.90 E-value=1.4e+02 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 025191 181 IHELGNIFNQLATL 194 (256)
Q Consensus 181 i~el~~if~~l~~l 194 (256)
...|.++...|+..
T Consensus 108 ~eiL~~lg~~LG~~ 121 (171)
T PRK08307 108 IEILLQFGKTLGQS 121 (171)
T ss_pred HHHHHHHHHHHCcC
Confidence 34455555555554
No 105
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=35.69 E-value=1.2e+02 Score=19.58 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
+.+-...+..|.....++..+..+=+.+|+.=...++....++..+...+++|.+.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555443
No 106
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.25 E-value=1.8e+02 Score=21.42 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 177 VESTIHELGNIFNQLATLVS-QQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 177 Ie~~i~el~~if~~l~~lV~-~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
.+..-.+|..-|..+-..+. ....+++.|+..-......+..-...+......
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566667777777776 446788899888777777776666666655444
No 107
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=35.04 E-value=79 Score=20.42 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=7.2
Q ss_pred HHHHHHHcccCchH
Q 025191 223 LLKYLNSISSNRWL 236 (256)
Q Consensus 223 L~kA~~~~~~~r~~ 236 (256)
.+.+.++-+++|.-
T Consensus 5 ~~~~~~~f~~nk~a 18 (56)
T PF12911_consen 5 WKDAWRRFRRNKLA 18 (56)
T ss_pred HHHHHHHHHhCchH
Confidence 34555555555543
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.96 E-value=1.4e+02 Score=20.00 Aligned_cols=16 Identities=13% Similarity=0.576 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 173 ALQNVESTIHELGNIF 188 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if 188 (256)
.++.|++++.+|-.||
T Consensus 29 ~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 29 SVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 109
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=34.78 E-value=97 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 025191 176 NVESTIHELGNIFNQLATLVSQQGE 200 (256)
Q Consensus 176 ~Ie~~i~el~~if~~l~~lV~~Qge 200 (256)
.|-..+.+++++..+|-..+.+|-.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~k 29 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIK 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888877643
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.64 E-value=1.4e+02 Score=20.03 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=16.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 201 IAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 201 ~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
-||.|..+|......|..+..|-.+|..+
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666655555543
No 111
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.39 E-value=1.3e+02 Score=28.46 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 025191 242 FVLIFFLMIFL 252 (256)
Q Consensus 242 ~vliv~~l~~i 252 (256)
+++++|++.||
T Consensus 174 ~~v~~~Ll~~V 184 (397)
T COG1459 174 LVVVLFLLIFV 184 (397)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 112
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=34.21 E-value=64 Score=18.51 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=12.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIFFLMIFLF 253 (256)
Q Consensus 232 ~~r~~~~~i~~vliv~~l~~i~ 253 (256)
+.|-+++-+-.+++.+++.+++
T Consensus 4 strel~lnftvvlitvilmwll 25 (31)
T PF05366_consen 4 STRELFLNFTVVLITVILMWLL 25 (31)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555555666666666655
No 113
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=34.02 E-value=67 Score=18.85 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025191 239 KIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~~ 255 (256)
.+++++.+.+++|.+|+
T Consensus 7 tfll~~tlgiiFFAIfF 23 (31)
T PRK11875 7 ILILTLALVTLFFAIAF 23 (31)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34444455555555553
No 114
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=33.59 E-value=74 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 025191 242 FVLIFFLMIFLF 253 (256)
Q Consensus 242 ~vliv~~l~~i~ 253 (256)
+++|++++++|+
T Consensus 37 lilicllli~ii 48 (52)
T PF04272_consen 37 LILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 115
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=33.34 E-value=2.3 Score=30.84 Aligned_cols=6 Identities=50% Similarity=1.237 Sum_probs=0.0
Q ss_pred cCchHH
Q 025191 232 SNRWLM 237 (256)
Q Consensus 232 ~~r~~~ 237 (256)
+.+|+.
T Consensus 64 Krrwlw 69 (81)
T PF14812_consen 64 KRRWLW 69 (81)
T ss_dssp ------
T ss_pred cchhHH
Confidence 344443
No 116
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=33.20 E-value=1.4e+02 Score=24.41 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 025191 181 IHELGNIFNQLA 192 (256)
Q Consensus 181 i~el~~if~~l~ 192 (256)
...|.++...|+
T Consensus 107 ~e~L~~lg~~LG 118 (170)
T PF09548_consen 107 KEILLELGKSLG 118 (170)
T ss_pred HHHHHHHHHHHc
Confidence 334444444443
No 117
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=33.15 E-value=3.1e+02 Score=28.33 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025191 235 WLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 235 ~~~~~i~~vliv~~l~~i~~ 254 (256)
...+++.+++.++++++++|
T Consensus 411 ~yR~~~~lil~~~llLIv~~ 430 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLC 430 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554
No 118
>COG4327 Predicted membrane protein [Function unknown]
Probab=32.55 E-value=72 Score=23.79 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=13.3
Q ss_pred HHHcccCchHHHHHHHHHHHHHHHHHHH
Q 025191 227 LNSISSNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 227 ~~~~~~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
.-|-+.|-.++..+++|.+++-+.+++|
T Consensus 11 ~aywranttli~~lL~vwflVSfvvi~f 38 (101)
T COG4327 11 RAYWRANTTLIAALLGVWFLVSFVVILF 38 (101)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444444433
No 119
>PRK00846 hypothetical protein; Provisional
Probab=32.26 E-value=1.9e+02 Score=20.72 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 219 (256)
..|..+|..+.-.-..-.+|+..|..|...||++...+..-...++..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777788888888888888887777666655543
No 120
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=31.75 E-value=1.8e+02 Score=20.40 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 025191 212 TMANVEGAQGAL 223 (256)
Q Consensus 212 a~~~v~~g~~eL 223 (256)
.+..|+..+.|+
T Consensus 24 iEeKvEf~~~Ei 35 (70)
T PF04210_consen 24 IEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHhHHHHH
Confidence 334444444444
No 121
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=31.75 E-value=38 Score=31.72 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 025191 237 MIKIFFV 243 (256)
Q Consensus 237 ~~~i~~v 243 (256)
+|+++.+
T Consensus 304 ~c~~~~i 310 (387)
T PF12751_consen 304 SCIYLSI 310 (387)
T ss_pred HHHHHHH
Confidence 4444433
No 122
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=31.64 E-value=1.9e+02 Score=20.72 Aligned_cols=31 Identities=6% Similarity=0.183 Sum_probs=23.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 025191 200 EIAIRIDENMDDTMANVEGAQGALLKYLNSI 230 (256)
Q Consensus 200 e~id~Id~nv~~a~~~v~~g~~eL~kA~~~~ 230 (256)
-.+|+++.+++.+...+..+..+-.+|..+-
T Consensus 39 Akv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 39 AKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888888887777776553
No 123
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=31.58 E-value=57 Score=26.29 Aligned_cols=14 Identities=0% Similarity=0.033 Sum_probs=5.5
Q ss_pred hhHHHHHHHhhHHH
Q 025191 198 QGEIAIRIDENMDD 211 (256)
Q Consensus 198 Qge~id~Id~nv~~ 211 (256)
++.-++..-..+..
T Consensus 80 ~~~~v~~~k~~LFs 93 (145)
T PF10661_consen 80 SDNTVKETKDSLFS 93 (145)
T ss_pred ccchHHHHHHHhhc
Confidence 34344444333333
No 124
>PRK10404 hypothetical protein; Provisional
Probab=31.48 E-value=2.3e+02 Score=21.33 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHH--------HHHHHHHHHHHcccCchHH
Q 025191 202 AIRIDENMDDTMANVEG--------AQGALLKYLNSISSNRWLM 237 (256)
Q Consensus 202 id~Id~nv~~a~~~v~~--------g~~eL~kA~~~~~~~r~~~ 237 (256)
=++++..+..+...+.. +..-...+..|.+.++|.-
T Consensus 40 R~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~a 83 (101)
T PRK10404 40 KARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQG 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 35566666666654433 3334444677788888875
No 125
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=31.45 E-value=3.1e+02 Score=24.82 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025191 169 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 228 (256)
Q Consensus 169 eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~ 228 (256)
+-.+.+..|++.+ ++||..|..-|..-.+-|+.|..-+..++..|++-.. -+||.+
T Consensus 22 qi~~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g-s~kAi~ 77 (297)
T PF11945_consen 22 QIADALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG-SKKAIT 77 (297)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccEE
Confidence 3334555555544 4568899999999999999999999999888885433 344543
No 126
>PRK04406 hypothetical protein; Provisional
Probab=31.38 E-value=1.9e+02 Score=20.47 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
..|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777888888888888888888776666555543
No 127
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.24 E-value=1.8e+02 Score=21.29 Aligned_cols=11 Identities=27% Similarity=0.127 Sum_probs=4.9
Q ss_pred cCchHHHHHHH
Q 025191 232 SNRWLMIKIFF 242 (256)
Q Consensus 232 ~~r~~~~~i~~ 242 (256)
-||+-+++-.+
T Consensus 65 ENrK~~~ls~~ 75 (85)
T PF15188_consen 65 ENRKSMLLSVA 75 (85)
T ss_pred hhhhhHHHHHH
Confidence 45555433333
No 128
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=31.16 E-value=1e+02 Score=26.98 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=15.4
Q ss_pred HHHHHHHHcccCc--hHHHHHHHHHHHHHHHHHHH
Q 025191 222 ALLKYLNSISSNR--WLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 222 eL~kA~~~~~~~r--~~~~~i~~vliv~~l~~i~~ 254 (256)
+..++.+--++++ |+.|.+++++.+++++.|.+
T Consensus 29 ~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~ 63 (239)
T COG3736 29 EEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIAI 63 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333334 55555665555555444443
No 129
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=30.95 E-value=47 Score=20.14 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 239 KIFFVLIFFLMIFLFF 254 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~ 254 (256)
+++.++++++.+..+|
T Consensus 14 ~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 14 MVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 130
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=30.49 E-value=1.6e+02 Score=19.28 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 025191 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 221 (256)
Q Consensus 167 ~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~ 221 (256)
+..-...+..+.....+|+.+-.+=+.+|..=..-+|+...++..+...+.++.+
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555556655566666666666666665555543
No 131
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.49 E-value=56 Score=23.87 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 025191 240 IFFVLIFFLMIFLF 253 (256)
Q Consensus 240 i~~vliv~~l~~i~ 253 (256)
+++..+||+++.++
T Consensus 16 ~~GM~~VF~fL~lL 29 (85)
T PRK03814 16 LTGMGVVFIFLTLL 29 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 132
>COG4640 Predicted membrane protein [Function unknown]
Probab=30.06 E-value=67 Score=30.29 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 025191 218 GAQGALLK 225 (256)
Q Consensus 218 ~g~~eL~k 225 (256)
.|++.+..
T Consensus 31 qan~~tn~ 38 (465)
T COG4640 31 QANKSTNE 38 (465)
T ss_pred hhhHHHHH
Confidence 44444444
No 133
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.35 E-value=84 Score=21.25 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 025191 243 VLIFFLMIFLF 253 (256)
Q Consensus 243 vliv~~l~~i~ 253 (256)
++++|++.|-+
T Consensus 15 l~vl~~~~Ftl 25 (58)
T PF13314_consen 15 LIVLFGASFTL 25 (58)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 134
>CHL00031 psbT photosystem II protein T
Probab=28.68 E-value=72 Score=19.00 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025191 239 KIFFVLIFFLMIFLFFV 255 (256)
Q Consensus 239 ~i~~vliv~~l~~i~~~ 255 (256)
.+++++.+.+++|.+|+
T Consensus 7 tfll~~tlgilFFAI~F 23 (33)
T CHL00031 7 TFLLVSTLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHHHHHHHhhee
Confidence 34444445555555543
No 135
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.36 E-value=2.2e+02 Score=23.23 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 025191 185 GNIFNQLATLV 195 (256)
Q Consensus 185 ~~if~~l~~lV 195 (256)
.+++.+++.-+
T Consensus 107 ~e~L~~lg~~L 117 (170)
T PF09548_consen 107 KEILLELGKSL 117 (170)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 136
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.36 E-value=2.9e+02 Score=21.54 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025191 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224 (256)
Q Consensus 176 ~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 224 (256)
++++.-.+|.+-=+++..+...-.++++.+-.+......++..|..+|.
T Consensus 33 eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 33 ELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566666677777788888888888888888888888888873
No 137
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=28.31 E-value=3.3e+02 Score=22.27 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025191 2 EIQELTAVIKQD--------ITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLK 73 (256)
Q Consensus 2 eIe~LT~~Ik~~--------i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk 73 (256)
+|+.|-.+|+.. +.+++..|+.|...-+.- .|. -|..+|.++-..|++.++..+..||
T Consensus 29 ~Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~------------~NA--Eleekll~lq~lfq~Kl~aKL~aLK 94 (160)
T PF03978_consen 29 EINSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDV------------SNA--ELEEKLLKLQKLFQDKLEAKLAALK 94 (160)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh------------hhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544 666777777766643321 112 6788999999999999999999999
Q ss_pred HHhhhhhhh
Q 025191 74 VHESRRQLF 82 (256)
Q Consensus 74 ~~~~R~~~f 82 (256)
+-++.-.-|
T Consensus 95 Aak~~i~~~ 103 (160)
T PF03978_consen 95 AAKQKIEGI 103 (160)
T ss_pred HHHHHhcch
Confidence 965544433
No 138
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=27.97 E-value=55 Score=23.90 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=3.1
Q ss_pred ccCchHH
Q 025191 231 SSNRWLM 237 (256)
Q Consensus 231 ~~~r~~~ 237 (256)
|.+|..|
T Consensus 32 ka~kysI 38 (90)
T PF15183_consen 32 KANKYSI 38 (90)
T ss_pred cccceee
Confidence 4445443
No 139
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.62 E-value=4.8e+02 Score=23.87 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHcc---cCchHHHHHHHHHHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRI---DENMDDTMANVEGAQGALLKYLNSIS---SNRWLMIKIFFVLIFF 247 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~I---d~nv~~a~~~v~~g~~eL~kA~~~~~---~~r~~~~~i~~vliv~ 247 (256)
+..++..+.++.++=+.|-.+..-|..+-..+ +.||+-..+++.++.+.++.+.+.-+ .++...-.|++..+++
T Consensus 224 ~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llv 303 (316)
T KOG3894|consen 224 LNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLV 303 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHH
Confidence 44455556677777777777777776665443 77788888888888888887665543 3333444677766666
Q ss_pred HHHHHHHh
Q 025191 248 LMIFLFFV 255 (256)
Q Consensus 248 ~l~~i~~~ 255 (256)
+-++++|+
T Consensus 304 lsf~lLFl 311 (316)
T KOG3894|consen 304 LSFSLLFL 311 (316)
T ss_pred HHHHHHHH
Confidence 66777775
No 140
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=27.32 E-value=1.2e+02 Score=17.51 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 025191 240 IFFVLIFFLMIFLFFV 255 (256)
Q Consensus 240 i~~vliv~~l~~i~~~ 255 (256)
++++..+.+++|.+|+
T Consensus 8 ~ll~~tlgilffAI~F 23 (29)
T PF01405_consen 8 FLLIGTLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhc
Confidence 3444444455555553
No 141
>PHA02849 putative transmembrane protein; Provisional
Probab=27.21 E-value=83 Score=22.64 Aligned_cols=18 Identities=22% Similarity=0.681 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025191 237 MIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 237 ~~~i~~vliv~~l~~i~~ 254 (256)
+++.++++++.+++|+++
T Consensus 18 ~vi~v~v~vI~i~~flLl 35 (82)
T PHA02849 18 TVILVFVLVISFLAFMLL 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444445443
No 142
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.14 E-value=84 Score=29.61 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=8.6
Q ss_pred HcccCchHHHHHHHH
Q 025191 229 SISSNRWLMIKIFFV 243 (256)
Q Consensus 229 ~~~~~r~~~~~i~~v 243 (256)
+..+.+|-++.++++
T Consensus 211 ~VpK~k~~ifk~~gi 225 (434)
T COG4499 211 FVPKKKYTIFKYFGI 225 (434)
T ss_pred ecccccceehhhHHH
Confidence 345666666555555
No 143
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.53 E-value=2.8e+02 Score=24.15 Aligned_cols=11 Identities=0% Similarity=-0.127 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 025191 217 EGAQGALLKYL 227 (256)
Q Consensus 217 ~~g~~eL~kA~ 227 (256)
++..++++++.
T Consensus 130 ~~ml~evK~~~ 140 (230)
T PF03904_consen 130 KSMLQEVKQSH 140 (230)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 144
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=26.49 E-value=1.3e+02 Score=20.52 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcccCchHHHHHHHHHHHHHH
Q 025191 220 QGALLKYLNSISSNRWLMIKIFFVLIFFLM 249 (256)
Q Consensus 220 ~~eL~kA~~~~~~~r~~~~~i~~vliv~~l 249 (256)
.+-|.|-.++++..+.+++.+++++++-++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~aLi~v~vv 59 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILALILVMVV 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666667777777666656555555443
No 145
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=26.38 E-value=98 Score=22.09 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=13.0
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 025191 201 IAIRIDENMDDTMANVEGA 219 (256)
Q Consensus 201 ~id~Id~nv~~a~~~v~~g 219 (256)
.++.||.+.....-...+.
T Consensus 10 ~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAAR 28 (82)
T ss_pred HHHHHHHHHHhcCcHHHHH
Confidence 7888888776665555444
No 146
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=26.22 E-value=25 Score=34.78 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 025191 4 QELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHE 76 (256)
Q Consensus 4 e~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~ 76 (256)
+....-|+..|......|.++|..++.+. ..-...+..|...+..+|...+++.+ |+..+.+..
T Consensus 258 N~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~--------~aL~~L~~qL~nnF~AISssI~dIy~-RLd~leAda 321 (610)
T PF01601_consen 258 NKAIGNIQLGFTTTASALNKIQDVVNQQG--------QALNQLTSQLSNNFGAISSSIQDIYN-RLDQLEADA 321 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHhhcc
Confidence 34455677788888888888888887543 34455666677777777777776543 355554433
No 147
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=25.77 E-value=7.5e+02 Score=25.50 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025191 7 TAVIKQDITALNSAVVDLQL 26 (256)
Q Consensus 7 T~~Ik~~i~~~~~~I~~L~~ 26 (256)
...+++....++..++.|..
T Consensus 79 ~~~~~~~~~~~~~~l~~l~~ 98 (968)
T TIGR02956 79 GKKLTLQSETLLHSLKALGE 98 (968)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33444444555555555543
No 148
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.70 E-value=3.6e+02 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025191 169 SRAEALQNVESTIHELG 185 (256)
Q Consensus 169 eR~~~i~~Ie~~i~el~ 185 (256)
+|.......|.++.+|+
T Consensus 128 ~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 128 NRDTALTQMENAIVEIH 144 (209)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 34445555555555544
No 149
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=25.55 E-value=92 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=14.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 232 ~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
+.|...+++|=++++++++|+.|
T Consensus 27 ~~kY~~Iv~FEi~va~~L~~~FF 49 (128)
T PHA02689 27 AESYLAIAVLELLLALALALVFF 49 (128)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 44555666776777777777655
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.29 E-value=96 Score=24.18 Aligned_cols=29 Identities=7% Similarity=0.352 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025191 163 QDSYMQSRAEALQNVESTIHELGNIFNQL 191 (256)
Q Consensus 163 ~~~~~~eR~~~i~~Ie~~i~el~~if~~l 191 (256)
-.+++-++.+++.++..+|.+|.+||+.-
T Consensus 87 ~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999874
No 151
>COG5346 Predicted membrane protein [Function unknown]
Probab=25.01 E-value=3.4e+02 Score=21.33 Aligned_cols=10 Identities=20% Similarity=0.324 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 025191 239 KIFFVLIFFL 248 (256)
Q Consensus 239 ~i~~vliv~~ 248 (256)
.||++.+|+.
T Consensus 95 liFgi~LVvs 104 (136)
T COG5346 95 LIFGIFLVVS 104 (136)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 152
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=24.92 E-value=1.2e+02 Score=19.39 Aligned_cols=8 Identities=50% Similarity=0.799 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025191 244 LIFFLMIF 251 (256)
Q Consensus 244 liv~~l~~ 251 (256)
+|++++++
T Consensus 39 licllli~ 46 (52)
T TIGR01294 39 LICLLLIC 46 (52)
T ss_pred HHHHHHHH
Confidence 33333333
No 153
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=24.53 E-value=31 Score=28.03 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 025191 219 AQGALLKY 226 (256)
Q Consensus 219 g~~eL~kA 226 (256)
|-.-|.|-
T Consensus 115 GyDsLLKk 122 (159)
T PF06789_consen 115 GYDSLLKK 122 (159)
T ss_pred chHHHHHH
Confidence 44444443
No 154
>PRK10132 hypothetical protein; Provisional
Probab=24.11 E-value=3.3e+02 Score=20.75 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=21.0
Q ss_pred HHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHcccCchHHH
Q 025191 201 IAIRIDENMDDTMANVE-------GAQGALLKYLNSISSNRWLMI 238 (256)
Q Consensus 201 ~id~Id~nv~~a~~~v~-------~g~~eL~kA~~~~~~~r~~~~ 238 (256)
+=++++.....+..... .+..-...+..|.+.++|.-+
T Consensus 46 lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 46 ARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 33555555555554333 233334445667788888753
No 155
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.11 E-value=3.1e+02 Score=20.56 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025191 219 AQGALL 224 (256)
Q Consensus 219 g~~eL~ 224 (256)
+..|+.
T Consensus 23 a~~E~~ 28 (121)
T PF07332_consen 23 AKAELR 28 (121)
T ss_pred HHHHHH
Confidence 333333
No 156
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=23.94 E-value=1.6e+02 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHcc-cCchHH
Q 025191 212 TMANVEGAQGALLKYLNSIS-SNRWLM 237 (256)
Q Consensus 212 a~~~v~~g~~eL~kA~~~~~-~~r~~~ 237 (256)
-...++++.++|++-.+... .++|..
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHH
Confidence 34456677888877776653 344443
No 157
>PRK11637 AmiB activator; Provisional
Probab=23.72 E-value=6.2e+02 Score=23.79 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
.+.+-..++..++..|..+..-..++...+..-..-|+..+..+......++.....|.+
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777777777777777777777777777788888888888887777777765
No 158
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.64 E-value=1.2e+02 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 237 MIKIFFVLIFFLMIFL 252 (256)
Q Consensus 237 ~~~i~~vliv~~l~~i 252 (256)
+-++.+|++.++++++
T Consensus 6 IaIIv~V~vg~~iiii 21 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIII 21 (38)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3345555544444444
No 159
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=23.56 E-value=1.3e+02 Score=19.69 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025191 236 LMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 236 ~~~~i~~vliv~~l~~i~~ 254 (256)
+...+|.+.|+|.++++++
T Consensus 23 ww~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3335566667777776654
No 160
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.35 E-value=1e+02 Score=24.09 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 025191 236 LMIKIFFVL 244 (256)
Q Consensus 236 ~~~~i~~vl 244 (256)
++.|+|+|+
T Consensus 66 i~~Ii~gv~ 74 (122)
T PF01102_consen 66 IIGIIFGVM 74 (122)
T ss_dssp HHHHHHHHH
T ss_pred eeehhHHHH
Confidence 344444444
No 161
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=23.31 E-value=2.6e+02 Score=22.98 Aligned_cols=15 Identities=7% Similarity=-0.225 Sum_probs=7.1
Q ss_pred HHHHHHHHHcccCch
Q 025191 221 GALLKYLNSISSNRW 235 (256)
Q Consensus 221 ~eL~kA~~~~~~~r~ 235 (256)
.++.+|...++++.+
T Consensus 139 ~~~~~a~~~~~k~~K 153 (171)
T PRK08307 139 REEEEAEEEQKKNEK 153 (171)
T ss_pred HHHHHHHHHHHhCCc
Confidence 334455555544443
No 162
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.30 E-value=1.4e+02 Score=20.34 Aligned_cols=8 Identities=13% Similarity=0.077 Sum_probs=3.9
Q ss_pred cccCchHH
Q 025191 230 ISSNRWLM 237 (256)
Q Consensus 230 ~~~~r~~~ 237 (256)
+++++|.+
T Consensus 27 ~RrRrc~~ 34 (60)
T PF06072_consen 27 RRRRRCRL 34 (60)
T ss_pred HHHHHHHH
Confidence 34555553
No 163
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=23.25 E-value=74 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.908 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025191 238 IKIFFVLIFFLMIFLF 253 (256)
Q Consensus 238 ~~i~~vliv~~l~~i~ 253 (256)
++++-++|+|+.+|++
T Consensus 5 lKFvY~mIiflslflv 20 (54)
T PF07127_consen 5 LKFVYAMIIFLSLFLV 20 (54)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3444455555555544
No 164
>PHA02967 hypothetical protein; Provisional
Probab=23.21 E-value=1e+02 Score=24.22 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=14.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 232 ~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
..|...+++|=++++++++++.|
T Consensus 24 ~~kY~~Iv~FEi~val~L~~~FF 46 (128)
T PHA02967 24 PNKYFYILVFEVIVALIIINFFF 46 (128)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 34555566666666766666654
No 165
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.75 E-value=1.1e+02 Score=24.03 Aligned_cols=10 Identities=10% Similarity=-0.227 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 025191 237 MIKIFFVLIF 246 (256)
Q Consensus 237 ~~~i~~vliv 246 (256)
+|++++|+.+
T Consensus 71 ~gv~aGvIg~ 80 (122)
T PF01102_consen 71 FGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555433
No 166
>PHA03046 Hypothetical protein; Provisional
Probab=22.70 E-value=4e+02 Score=21.20 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 216 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v 216 (256)
+.++..-.-.++.+---+.-|..+|+....-...-+..|+|+|.+.+....++
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555678888888889999999999999999999999999988765544
No 167
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.41 E-value=1.2e+02 Score=19.51 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=6.2
Q ss_pred ccCchHHHHHHH
Q 025191 231 SSNRWLMIKIFF 242 (256)
Q Consensus 231 ~~~r~~~~~i~~ 242 (256)
|+-||.++++++
T Consensus 2 kk~rwiili~iv 13 (47)
T PRK10299 2 KKFRWVVLVVVV 13 (47)
T ss_pred ceeeehHHHHHH
Confidence 455676544433
No 168
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.18 E-value=2.9e+02 Score=19.42 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.9
Q ss_pred HHHHHhhHHHH
Q 025191 202 AIRIDENMDDT 212 (256)
Q Consensus 202 id~Id~nv~~a 212 (256)
+|.||+.|+-+
T Consensus 21 Ld~iEeKVEf~ 31 (70)
T TIGR01149 21 LDEIEEKVEFV 31 (70)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 169
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=21.95 E-value=2.8e+02 Score=22.69 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=7.1
Q ss_pred HHHHHHHHHcccCch
Q 025191 221 GALLKYLNSISSNRW 235 (256)
Q Consensus 221 ~eL~kA~~~~~~~r~ 235 (256)
.++..|...++++.+
T Consensus 138 ~~~~~a~~~~~k~~K 152 (170)
T TIGR02833 138 RQLTEAEDEQKKNEK 152 (170)
T ss_pred HHHHHHHHHHHhccc
Confidence 334455555544443
No 170
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=21.85 E-value=49 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=14.4
Q ss_pred cccCchHHHHHHHHHHHHHH
Q 025191 230 ISSNRWLMIKIFFVLIFFLM 249 (256)
Q Consensus 230 ~~~~r~~~~~i~~vliv~~l 249 (256)
+++.||-+++|.+++++|.+
T Consensus 82 ~~~~rw~lliiw~ii~v~~i 101 (143)
T PF06198_consen 82 RSKSRWPLLIIWSIIIVFAI 101 (143)
T ss_pred ccccccHHHHHHHHHHheee
Confidence 35678888888887777654
No 171
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=21.56 E-value=3.6e+02 Score=26.72 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIA 202 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~i 202 (256)
.+-+..++.++.+|..|++=...|+.+|-+=.--|
T Consensus 431 ~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 431 NALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 34444555555555555555555555554433333
No 172
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=21.55 E-value=1e+02 Score=20.66 Aligned_cols=8 Identities=13% Similarity=0.467 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 025191 247 FLMIFLFF 254 (256)
Q Consensus 247 ~~l~~i~~ 254 (256)
|++++|-+
T Consensus 24 ~~f~lI~~ 31 (61)
T PF06692_consen 24 FVFFLITS 31 (61)
T ss_pred HHHHHHhh
Confidence 33333333
No 173
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=20.86 E-value=7.5e+02 Score=23.69 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC-------------CCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025191 8 AVIKQDITALNSAVVDLQLVSNSRNDG-------------ISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLK 73 (256)
Q Consensus 8 ~~Ik~~i~~~~~~I~~L~~~~~~~~~~-------------~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk 73 (256)
.-|.++|..+.+.|..|+.|.+.-.+. .-.+.-.+-.-.+.-|+..|..++..|--+.+.-.+..|
T Consensus 253 e~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ~k 331 (426)
T smart00806 253 ETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQEK 331 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999998876653 122444555666677778888888888888777666544
No 174
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.51 E-value=87 Score=22.07 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 025191 241 FFVLIFFLMIFL 252 (256)
Q Consensus 241 ~~vliv~~l~~i 252 (256)
|++|+|++++++
T Consensus 15 fA~LFv~Ll~yv 26 (71)
T PF10960_consen 15 FAVLFVWLLFYV 26 (71)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 175
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=20.21 E-value=1.2e+02 Score=21.92 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=5.3
Q ss_pred hhHHHHHHHhhHHH
Q 025191 198 QGEIAIRIDENMDD 211 (256)
Q Consensus 198 Qge~id~Id~nv~~ 211 (256)
|+-..|..-+....
T Consensus 23 ~~GfFd~~~ygfrr 36 (92)
T PF13038_consen 23 QSGFFDGFSYGFRR 36 (92)
T ss_pred hcCchHHHHHHHHH
Confidence 33333444333333
Done!