Query 025191
Match_columns 256
No_of_seqs 223 out of 1185
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.9 5.8E-26 2E-30 201.2 6.5 185 2-234 89-279 (279)
2 3hd7_B Syntaxin-1A; membrane p 99.9 2.8E-24 9.7E-29 164.6 13.5 81 162-242 11-91 (109)
3 1dn1_B Syntaxin 1A, syntaxin b 99.9 3.9E-25 1.4E-29 194.7 6.3 193 2-239 74-267 (267)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 2.5E-22 8.4E-27 144.6 10.4 75 165-239 3-77 (77)
5 2nps_B Syntaxin 13, vesicle-as 99.9 2.2E-21 7.4E-26 137.5 9.9 70 168-237 2-71 (71)
6 1sfc_B Protein (syntaxin 1A), 99.8 3.3E-20 1.1E-24 135.3 10.8 73 162-234 11-83 (83)
7 3b5n_B Protein SSO1; snare com 99.8 6.6E-20 2.3E-24 129.1 10.8 67 165-231 3-69 (69)
8 1gl2_B Syntaxin 7; membrane pr 99.8 6.8E-19 2.3E-23 122.4 8.3 64 165-228 2-65 (65)
9 1n7s_B Syntaxin 1A; neuronal s 99.8 1.2E-18 4.2E-23 122.2 9.4 64 164-227 4-67 (68)
10 1fio_A SSO1 protein; four heli 99.6 2.9E-14 9.9E-19 119.4 14.2 142 2-199 50-196 (196)
11 3c98_B Syntaxin-1A; protein co 99.6 3.8E-15 1.3E-19 129.8 7.2 192 2-238 86-278 (279)
12 2nps_D Syntaxin-6; vesicle fus 98.3 3.1E-06 1.1E-10 60.8 7.9 68 166-233 13-80 (82)
13 1gl2_D Syntaxin 8, vesicle tra 98.0 2.3E-05 8E-10 53.6 7.4 61 166-226 3-63 (65)
14 1n7s_D SNAP-25A; neuronal snar 98.0 6.8E-05 2.3E-09 51.4 9.3 59 167-225 5-63 (66)
15 1sfc_D Protein (SNAP-25B), pro 97.9 0.0001 3.4E-09 53.4 9.8 63 164-226 21-83 (87)
16 3hd7_B Syntaxin-1A; membrane p 97.7 0.00093 3.2E-08 50.3 12.5 88 157-248 13-100 (109)
17 1ez3_A Syntaxin-1A; three heli 97.7 0.00026 8.7E-09 54.4 9.5 74 2-75 51-125 (127)
18 1l4a_D S-SNAP25 fusion protein 97.6 0.00022 7.5E-09 51.6 7.8 61 166-226 24-84 (87)
19 3b5n_D Protein transport prote 97.5 0.00091 3.1E-08 45.5 9.4 58 168-225 6-63 (64)
20 3hd7_A Vesicle-associated memb 97.4 0.0038 1.3E-07 45.4 11.8 42 172-213 5-46 (91)
21 1s94_A S-syntaxin; three helix 97.3 0.00024 8.2E-09 58.1 5.4 84 2-85 82-166 (180)
22 1nhl_A Synaptosomal-associated 96.4 0.024 8.2E-07 37.0 8.3 47 178-224 6-52 (54)
23 1n7s_C SNAP-25A; neuronal snar 96.0 0.13 4.3E-06 36.3 10.8 59 167-225 18-76 (79)
24 2kog_A Vesicle-associated memb 95.2 0.0012 4E-08 50.6 -2.4 39 173-211 34-72 (119)
25 3b5n_C Protein transport prote 95.2 0.45 1.6E-05 32.6 10.8 47 183-229 23-69 (70)
26 1l4a_C S-SNAP25 fusion protein 93.2 0.3 1E-05 34.6 6.7 52 172-223 27-78 (83)
27 1gl2_C VTI1B, vesicle transpor 92.4 1.3 4.5E-05 29.7 8.8 53 172-224 9-61 (65)
28 2dnx_A Syntaxin-12; snare, HAB 89.8 2.1 7.3E-05 32.6 8.8 68 3-74 53-120 (130)
29 2nps_C Vesicle transport throu 89.0 4.4 0.00015 28.3 10.4 65 166-230 13-77 (81)
30 2dnx_A Syntaxin-12; snare, HAB 85.0 8.3 0.00028 29.2 9.6 78 2-81 11-120 (130)
31 3hd7_A Vesicle-associated memb 84.0 9.3 0.00032 27.1 11.5 24 162-185 23-46 (91)
32 1sfc_A VAMP 2, protein (synapt 76.8 16 0.00055 26.2 8.2 40 172-211 30-69 (96)
33 1jth_B Syntaxin 1A; coiled-coi 65.5 29 0.00098 23.5 9.3 62 163-224 8-69 (77)
34 2nps_B Syntaxin 13, vesicle-as 65.3 28 0.00094 23.2 8.6 61 165-225 6-66 (71)
35 2kog_A Vesicle-associated memb 61.7 7.3 0.00025 29.3 3.6 12 166-177 55-66 (119)
36 3b5n_A Synaptobrevin homolog 1 61.4 30 0.001 22.4 7.9 39 173-211 3-41 (61)
37 1sfc_B Protein (syntaxin 1A), 58.0 43 0.0015 23.0 9.1 63 160-222 16-78 (83)
38 1n7s_B Syntaxin 1A; neuronal s 57.5 38 0.0013 22.3 8.9 54 166-219 13-66 (68)
39 3b5n_B Protein SSO1; snare com 56.5 40 0.0014 22.3 8.9 55 166-220 11-65 (69)
40 2nps_A VAMP-4, vesicle-associa 56.2 28 0.00095 23.5 5.6 38 174-211 10-47 (74)
41 2l3l_A Tubulin-specific chaper 54.3 59 0.002 23.9 7.5 51 11-61 57-107 (111)
42 1gl2_B Syntaxin 7; membrane pr 49.4 52 0.0018 21.5 8.1 54 166-219 10-63 (65)
43 1jdm_A Sarcolipin; helix, memb 49.4 17 0.0006 20.1 2.8 23 232-254 4-26 (31)
44 3n27_A Fusion glycoprotein F0, 49.2 55 0.0019 22.6 6.0 61 167-229 15-75 (80)
45 3efg_A Protein SLYX homolog; x 49.0 58 0.002 22.3 6.3 47 172-218 14-60 (78)
46 3ghg_A Fibrinogen alpha chain; 47.9 1E+02 0.0036 28.9 9.5 43 172-214 117-159 (562)
47 1hs7_A Syntaxin VAM3; UP-and-D 47.7 75 0.0025 22.8 9.9 24 50-73 69-92 (97)
48 3p8c_F ABL interactor 2; actin 42.4 1.2E+02 0.0042 23.7 9.2 52 166-217 48-99 (159)
49 3zx6_A HAMP, methyl-accepting 40.5 1.8E+02 0.0061 25.1 10.3 55 164-218 219-273 (341)
50 1qu7_A Methyl-accepting chemot 38.5 1.4E+02 0.0049 24.3 8.4 55 164-218 139-193 (227)
51 1l4a_A Synaptobrevin; snare, s 38.2 93 0.0032 21.2 6.2 39 173-211 16-54 (80)
52 4gwp_A Mediator of RNA polymer 36.3 1.3E+02 0.0044 22.2 7.1 66 164-229 3-72 (115)
53 1deq_A Fibrinogen (alpha chain 36.2 1.6E+02 0.0055 26.4 8.6 24 4-27 59-82 (390)
54 3swf_A CGMP-gated cation chann 34.7 91 0.0031 21.2 5.3 39 43-81 12-50 (74)
55 3arc_T Photosystem II reaction 33.1 55 0.0019 18.6 3.3 16 240-255 8-23 (32)
56 1urq_A M-tomosyn isoform; tran 30.5 1.1E+02 0.0039 19.9 7.3 38 174-211 6-43 (63)
57 1fjk_A Cardiac phospholamban; 30.1 58 0.002 20.0 3.3 9 244-252 39-47 (52)
58 1fio_A SSO1 protein; four heli 29.8 2E+02 0.0068 22.4 10.9 27 4-30 8-34 (196)
59 1t3j_A Mitofusin 1; coiled coi 29.0 1.6E+02 0.0054 21.0 7.9 28 3-30 45-72 (96)
60 1jcd_A Major outer membrane li 28.7 1.1E+02 0.0038 19.2 6.9 30 200-229 18-47 (52)
61 4dnd_A Syntaxin-10, SYN10; str 28.2 1.9E+02 0.0064 21.7 6.9 58 2-59 64-126 (130)
62 2c5k_T Syntaxin TLG1, T-snare 27.8 1.6E+02 0.0055 20.7 6.8 26 36-61 66-91 (95)
63 1qle_D Cytochrome AA3, ccytoch 27.3 67 0.0023 19.4 3.3 13 240-252 26-38 (43)
64 4fi5_A Nucleoprotein; structur 26.2 1.2E+02 0.0041 22.3 5.0 57 2-58 23-82 (113)
65 3g67_A Methyl-accepting chemot 25.4 2.7E+02 0.0093 22.6 9.1 11 7-17 13-23 (213)
66 3swy_A Cyclic nucleotide-gated 25.4 1.2E+02 0.0042 18.6 5.7 29 44-72 11-39 (46)
67 2k48_A Nucleoprotein; viral pr 24.9 2E+02 0.0068 20.9 6.4 62 2-63 36-100 (107)
68 1n7s_A Vesicle-associated memb 24.3 1.4E+02 0.0049 19.0 9.8 40 172-211 4-43 (63)
69 1ez3_A Syntaxin-1A; three heli 21.3 2.3E+02 0.0079 20.3 9.6 34 47-80 90-123 (127)
70 1gl2_A Endobrevin; membrane pr 21.0 1.8E+02 0.006 18.8 7.8 40 172-211 9-48 (65)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.92 E-value=5.8e-26 Score=201.24 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCcc-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-----GISSD-TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH 75 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-----~~~~~-~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~ 75 (256)
+|+.||.+|++.+..|+..|+.|+...+.... ..+.. +.+++.|++..|..+|++++..|+++|..|.+++|.+
T Consensus 89 ~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~ 168 (279)
T 2xhe_B 89 KLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGEN 168 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999987653210 11222 5689999999999999999999999999999999987
Q ss_pred hhhhhhhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHH
Q 025191 76 ESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQ 155 (256)
Q Consensus 76 ~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
..|...+..+..... . ...+++. ++. ..+++.
T Consensus 169 ~~R~~~i~~~~~~~e--e-----------------------------~~~~~e~--g~~---------------~~f~q~ 200 (279)
T 2xhe_B 169 VARQCRVVEPSLSDD--A-----------------------------IQKVIEH--GTE---------------GIFSGM 200 (279)
T ss_dssp TTTSCCSSCCCCSST--T-----------------------------HHHHHHH--C-----------------------
T ss_pred HHHHHHHhCCCCCHH--H-----------------------------HHHHHhC--Cch---------------HHHHHH
Confidence 665322111100000 0 0000000 000 001111
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 025191 156 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 234 (256)
Q Consensus 156 Q~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r 234 (256)
+.+..+....++++|+++|.+|+++|.||++||.+|+.||++||++||+||+||+.|..+|++|+.+|.+|.+|++++|
T Consensus 201 ~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 201 RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp ---------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 1112233455799999999999999999999999999999999999999999999999999999999999999999876
No 2
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.92 E-value=2.8e-24 Score=164.64 Aligned_cols=81 Identities=30% Similarity=0.366 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIF 241 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~i~ 241 (256)
....++++|++++.+||++|.||++||++|++||++||++||+||+|++.|..||++|+.+|++|.+|+|++|+++|+++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l 90 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence 34668999999999999999999999999999999999999999999999999999999999999999988776554444
Q ss_pred H
Q 025191 242 F 242 (256)
Q Consensus 242 ~ 242 (256)
+
T Consensus 91 ~ 91 (109)
T 3hd7_B 91 I 91 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.91 E-value=3.9e-25 Score=194.69 Aligned_cols=193 Identities=21% Similarity=0.254 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRN-DGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~-~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
+|+.|+.+|++.+..|...|+.|........ ...++.+.+.+.+++..|..+|.+++..|+.+|..|.+++|.+..|..
T Consensus 74 ~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~ 153 (267)
T 1dn1_B 74 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL 153 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 6889999999999999999999988654211 113456668899999999999999999999999999999999888876
Q ss_pred hhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHhhc
Q 025191 81 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMV 160 (256)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~ql~ 160 (256)
.+.++..+.. .+ .. .. .+|.+..|. ..++. + + + ..
T Consensus 154 ~i~~~~~tde--ei------e~---~i-e~g~~~~f~------q~~l~------~-----------------~--~--~~ 188 (267)
T 1dn1_B 154 EITGRTTTSE--EL------ED---ML-ESGNPAIFA------SGIIM------D-----------------S--S--IS 188 (267)
T ss_dssp HHTTCCCCHH--HH------HH---HH-HTCSSCTTT------TTCCC------C-----------------S--H--HH
T ss_pred hccCCCCCHH--HH------HH---HH-hCCcHHHHH------HHHHH------h-----------------h--H--HH
Confidence 6654322210 00 00 00 011111110 00000 0 0 0 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHH
Q 025191 161 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 239 (256)
Q Consensus 161 ~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~ 239 (256)
.....++++|+++|.+|+++|.||++||.+|+.||++||++||+||+||+.|..+|+.|..+|.+|.+|++++|++.|+
T Consensus 189 ~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 189 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 2346689999999999999999999999999999999999999999999999999999999999999999998887653
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.88 E-value=2.5e-22 Score=144.60 Aligned_cols=75 Identities=31% Similarity=0.395 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHHH
Q 025191 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 239 (256)
Q Consensus 165 ~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~~ 239 (256)
.++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..+|++|+.+|.+|.+|++++|+++|+
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999887653
No 5
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.86 E-value=2.2e-21 Score=137.47 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 237 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~ 237 (256)
++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..+|+.|..+|.+|.+|++++|+|+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999988763
No 6
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.83 E-value=3.3e-20 Score=135.28 Aligned_cols=73 Identities=30% Similarity=0.390 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 025191 162 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 234 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r 234 (256)
....++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..+|++|..+|.+|.+|++++|
T Consensus 11 ~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4466899999999999999999999999999999999999999999999999999999999999999999876
No 7
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.82 E-value=6.6e-20 Score=129.07 Aligned_cols=67 Identities=31% Similarity=0.416 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Q 025191 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 231 (256)
Q Consensus 165 ~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~ 231 (256)
.++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..+|++|+.+|.+|.+|+|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999985
No 8
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.77 E-value=6.8e-19 Score=122.41 Aligned_cols=64 Identities=25% Similarity=0.486 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025191 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 228 (256)
Q Consensus 165 ~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~ 228 (256)
.++++|+++|.+|+++|.||++||++|+.||.+||++||+||+||+.|..+|++|..+|.+|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999999999999999999999999999999864
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.77 E-value=1.2e-18 Score=122.23 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 227 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~ 227 (256)
..++++|+++|.+|+++|.||++||++|+.||.+||++||+||+||+.|..||++|+.+|.+|.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999999999985
No 10
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.58 E-value=2.9e-14 Score=119.37 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
+|+.|+..|++.+..|+..|+.|..... ..++..+++..|..+|++++..|+++|..|.+++|.+..|...
T Consensus 50 ~i~~l~~~i~~~~~~~~~~lk~l~~~~~---------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~ 120 (196)
T 1fio_A 50 SLDNFVAQATDLQFKLKNEIKSAQRDGI---------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998642 2478999999999999999999999999999999999987755
Q ss_pred hcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHH-----
Q 025191 82 FSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQ----- 156 (256)
Q Consensus 82 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q----- 156 (256)
+..+..+.. .+ ..+ .+++. . ...+++..
T Consensus 121 i~~~~~~~~--e~-----------------------------~~~-------~~~~~-~--------~~~f~~~~~~~~~ 153 (196)
T 1fio_A 121 IIQPEATED--EV-----------------------------EAA-------ISDVG-G--------QQIFSQALLNANR 153 (196)
T ss_dssp HHCTTCCHH--HH-----------------------------HHH-------TSHHH-H--------HHHHHHHTC----
T ss_pred hcCCCCCHH--HH-----------------------------HHH-------HHcCC-c--------hhHHHHHHHhccc
Confidence 443211100 00 000 00000 0 00111100
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025191 157 QQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG 199 (256)
Q Consensus 157 ~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qg 199 (256)
.........++++|+++|.+|+++|.||++||.|||.||++||
T Consensus 154 ~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 154 RGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1112345678999999999999999999999999999999998
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.56 E-value=3.8e-15 Score=129.79 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
+++.++..|++.+..++..+..|......... ........+..+....|...++.....|...+..|...++....|..
T Consensus 86 ~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la 165 (279)
T 3c98_B 86 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL 165 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998876543222 24557788999999999999999999999999999988887666665
Q ss_pred hhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHHHhhc
Q 025191 81 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMV 160 (256)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~ql~ 160 (256)
.+........ .. .. .. ..+.+. ..... .. .....+
T Consensus 166 ~~~~~~~~~~--~~------~~--~~--~~~~~~----------~~~~~----~~-------------------~~~~~~ 200 (279)
T 3c98_B 166 EITGRTTTSE--EL------ED--ML--ESGNPA----------IFASG----II-------------------MDSSIS 200 (279)
T ss_dssp HHHTCCCCHH--HH------HH--HH--HSCCTT----------SSTTT----SC-------------------SCSSST
T ss_pred HhhccCccch--HH------HH--HH--HhhhhH----------HHHHH----HH-------------------HHHHHH
Confidence 5554322110 00 00 00 000000 00000 00 001122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchHHH
Q 025191 161 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 238 (256)
Q Consensus 161 ~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~~~ 238 (256)
......++++...+.+|+.+|.+|+++|.+|+.+|.+|++++|+|++||+.+..+|+.|..+|.+|.+|++++|+|.|
T Consensus 201 ~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~ 278 (279)
T 3c98_B 201 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 278 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 344567899999999999999999999999999999999999999999999999999999999999999998887754
No 12
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.27 E-value=3.1e-06 Score=60.83 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccC
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 233 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~ 233 (256)
++++.++.+..|..+|..|++|..+|+..|.+|..+||.+++.++.+...+..+++.+.+..+..+.+
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 44555678999999999999999999999999999999999999999999999999999988765443
No 13
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.00 E-value=2.3e-05 Score=53.61 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
++++.++.+..|...+..|++|..+|+..|..|..+||+|++.++.+...+..+++.+.+.
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678899999999999999999999999999999999999999999999998887653
No 14
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.96 E-value=6.8e-05 Score=51.42 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 167 ~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
-.+.++.+..|...+..|++|..+|+..|..|..+||+|++.++.+...+..+++.+.+
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999988865
No 15
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.90 E-value=0.0001 Score=53.45 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
+.+..+.++.+..|...+..|++|..+|+..|..|..+||+|++.++.+...+..+++.+.+-
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345567778999999999999999999999999999999999999999999999999888764
No 16
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.69 E-value=0.00093 Score=50.33 Aligned_cols=88 Identities=5% Similarity=0.111 Sum_probs=71.1
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchH
Q 025191 157 QQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 236 (256)
Q Consensus 157 ~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~ 236 (256)
+..+++....+.+=++.+.++..-..+++.+..+=+.++..=...++....|++.+...+.+|.+.= +..++++|+
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yq----k~~rkk~~i 88 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ----SKARRKKIM 88 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCccee
Confidence 3344556777888999999999999999999999999999999999999999999999999997553 334445677
Q ss_pred HHHHHHHHHHHH
Q 025191 237 MIKIFFVLIFFL 248 (256)
Q Consensus 237 ~~~i~~vliv~~ 248 (256)
++++++++++++
T Consensus 89 ~l~~~~i~~~i~ 100 (109)
T 3hd7_B 89 IIICCVILGIII 100 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 766666554443
No 17
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=97.68 E-value=0.00026 Score=54.43 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRN-DGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH 75 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~-~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~ 75 (256)
+++.|+.+|+..+..|...|+.|........ ...+....+.+.+++.+|..+|.+++..|+.++..|.++.|.+
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999987654211 1134566789999999999999999999999999999998763
No 18
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.62 E-value=0.00022 Score=51.65 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 226 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA 226 (256)
.-.+.++.+..|...+..|+.|-.+|+..|..|.++||+|++.++.+...+..+++.+.+-
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999999999999999999888763
No 19
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00091 Score=45.51 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 168 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 168 ~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
.+-++.+.++...+.-|+.|-..++..|..|.++||+|++.++.+...+..+++.|.+
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566789999999999999999999999999999999999999999999999888754
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.38 E-value=0.0038 Score=45.42 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 213 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~ 213 (256)
+.+.++...+.|+..++.+=-.-|-+-||-||.+++..+.-.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 567888999999999998888888999999998887665433
No 21
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=97.34 E-value=0.00024 Score=58.13 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
+++.|+..|+..+..|...|+.|......... ..+....+.+.+....|..+|.++...|+.++..|.++.|.+-.|.-
T Consensus 82 ~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~ 161 (180)
T 1s94_A 82 ELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQM 161 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999987654321 13445668899999999999999999999999999999998877765
Q ss_pred hhccc
Q 025191 81 LFSST 85 (256)
Q Consensus 81 ~f~~~ 85 (256)
.+.++
T Consensus 162 ~I~~~ 166 (180)
T 1s94_A 162 EITGR 166 (180)
T ss_dssp -----
T ss_pred HHhCC
Confidence 55443
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.44 E-value=0.024 Score=36.99 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025191 178 ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224 (256)
Q Consensus 178 e~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 224 (256)
.+-+.|..++-.....++..|||.|++++.+++....++..|.+.|.
T Consensus 6 ~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 6 LGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34455666666777889999999999999999999999999988774
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.02 E-value=0.13 Score=36.26 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 167 ~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
..+-.+.+++..+.+.|..++-......++.||+.|++++.+++.+..++..|.+.|..
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 34444567777778888888888999999999999999999999999999999988753
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.25 E-value=0.0012 Score=50.56 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
.+.++...+.|+..++.+=-.-|.+-||-||.+++..+.
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 456667777777777777777888899999888876554
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.18 E-value=0.45 Score=32.58 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 183 ELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 183 el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
+..+.-..=..++..|||.|++||.|++.+..+...|.+.|..-..+
T Consensus 23 e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 23 DAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333334445778999999999999999999999999988765443
No 26
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.20 E-value=0.3 Score=34.64 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGAL 223 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL 223 (256)
...++.-+-+.+..+.-..=..++..|||.|+||+.+++....++..|.+.|
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666667777889999999999999999988887776544
No 27
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=92.40 E-value=1.3 Score=29.67 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 224 (256)
+.+.+-.+.+.|--++-..+...+..|+|.|.+....+..+..++..+.+-|.
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 34555666777777888888889999999999999999999999999988775
No 28
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.75 E-value=2.1 Score=32.61 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 025191 3 IQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKV 74 (256)
Q Consensus 3 Ie~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~ 74 (256)
|..+...+.+.+...+..|..|....+. .+..+.+.......-|...|.++-..|+.+|+.+.++.|.
T Consensus 53 l~~~~~~t~~l~k~ts~~lk~L~~~~~~----~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 53 LQQLQHSTNQLAKETNELLKELGSLPLP----LSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777776421 1223445556666677777777888888888887777554
No 29
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=89.02 E-value=4.4 Score=28.28 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 230 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~ 230 (256)
-+..-...+..-...+.|-.+|-..+..-+..|.|.|.+....+..+..++..+.+-|..-.++.
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 34444456888888888889999999999999999999999999999999999999887765543
No 30
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.98 E-value=8.3 Score=29.23 Aligned_cols=78 Identities=6% Similarity=0.105 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHH--------------------------------H
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVD--------------------------------D 49 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~--------------------------------~ 49 (256)
|...|+..|...|..++..+..|++..+.-+.+. ....++..+.. .
T Consensus 11 ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~k--Dt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 11 DFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQ--DSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5688999999999999999999999987655431 11111111111 1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 50 LKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 50 L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
-+.....|+.+|+.+++.|..--+.-.+|.+.
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12235577888888888887665555554433
No 31
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=84.04 E-value=9.3 Score=27.13 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025191 162 LQDSYMQSRAEALQNVESTIHELG 185 (256)
Q Consensus 162 ~~~~~~~eR~~~i~~Ie~~i~el~ 185 (256)
.+-+.+-+|.+.+..+.....+|.
T Consensus 23 ~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHH
Confidence 344444555555555544444443
No 32
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=76.78 E-value=16 Score=26.19 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
..+.++...+.|+..|+.+=-.-|.+-|+-||.+++..+.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4677888888888888888888889999999988766554
No 33
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=65.53 E-value=29 Score=23.53 Aligned_cols=62 Identities=3% Similarity=0.079 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025191 163 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 224 (256)
Q Consensus 163 ~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 224 (256)
-...+.+=+..|.+|..-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|.+.-+
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888899999999988999988888899999999999999988876443
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=65.28 E-value=28 Score=23.24 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025191 165 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 225 (256)
Q Consensus 165 ~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 225 (256)
..+.+-+..|.+|..-..+|..|..+=+.+|..=..-++....||+.+...+.+|...-++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 66 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKK 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667788899999999999999999999988999999999999999999998765443
No 35
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=61.74 E-value=7.3 Score=29.25 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNV 177 (256)
Q Consensus 166 ~~~eR~~~i~~I 177 (256)
.+-+|.+.+..|
T Consensus 55 kvLeRGEkLd~L 66 (119)
T 2kog_A 55 KVLERDQKLSEL 66 (119)
T ss_dssp HHHCCCCSSCCC
T ss_pred HHHHcccHHHHH
Confidence 333444444333
No 36
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=61.38 E-value=30 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
.+.++...+.|+..|+.+=-.-|-+-|+-||.+.+..+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 477888899999999888888888999999988766553
No 37
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=58.02 E-value=43 Score=23.04 Aligned_cols=63 Identities=3% Similarity=0.104 Sum_probs=50.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHH
Q 025191 160 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 222 (256)
Q Consensus 160 ~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~e 222 (256)
+......+.+-.+.|.+|..-..+|..|..+=+.+|..=..-++....||+.+...+.+|.+.
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888888888888888888888888888888888888888888888653
No 38
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=57.46 E-value=38 Score=22.30 Aligned_cols=54 Identities=2% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 219 (256)
.+.+=.+.|.+|..-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555554444
No 39
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=56.54 E-value=40 Score=22.28 Aligned_cols=55 Identities=4% Similarity=0.081 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 220 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 220 (256)
.+.+=.+.|.+|..-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|.
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555554
No 40
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=56.24 E-value=28 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
+.++...+.|+..|+.+=-.-|.+-|+-||.+++..+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44556666666666666666777788888877765444
No 41
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=54.34 E-value=59 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHH
Q 025191 11 KQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEF 61 (256)
Q Consensus 11 k~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~F 61 (256)
+..|..|...|..|+++++........=..+.+.+.+..|+..|.++...+
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555889999999999999876554455667778888888888888766543
No 42
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=49.42 E-value=52 Score=21.46 Aligned_cols=54 Identities=6% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 219 (256)
.+..-.+.|.+|..-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666656666555555666666666665555554
No 43
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=49.38 E-value=17 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=13.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 025191 232 SNRWLMIKIFFVLIFFLMIFLFF 254 (256)
Q Consensus 232 ~~r~~~~~i~~vliv~~l~~i~~ 254 (256)
+.+-+++=+.+|+|.++++++++
T Consensus 4 n~qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 4 NTRELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445445556667777776653
No 44
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=49.19 E-value=55 Score=22.59 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 167 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 167 ~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
++.-.++|.+|......+.-..+.+...|..+|.+ .|.-+...|...++....+|+|+.+.
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 34455556666666555555555555555566654 35566778888888888888887654
No 45
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.00 E-value=58 Score=22.30 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
..|..+|..+.-.-....+|+..|..|...||++...+..-...+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777888888889999999999998887766666554
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.89 E-value=1e+02 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 214 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~ 214 (256)
+.+..|+..|..--...+-|-.-|.+|-.-|.|+|.+|+....
T Consensus 117 RrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 117 SRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444344456666777777788888877775543
No 47
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=47.72 E-value=75 Score=22.78 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 025191 50 LKNRLMSATKEFKEVLTMRTENLK 73 (256)
Q Consensus 50 L~~~l~~~s~~Fr~~q~~~~~~lk 73 (256)
|...|..+...|+.++..|.++.+
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777776644
No 48
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=42.36 E-value=1.2e+02 Score=23.72 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 025191 166 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 217 (256)
Q Consensus 166 ~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 217 (256)
+-+.+.-..+.+......|+.+-..|-.|+..|.+.++++|..|......|.
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556789999999999999999999999999999999999987655543
No 49
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=40.52 E-value=1.8e+02 Score=25.13 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
...+.+-.+.+..|...+.++...+.+++.-+.+|...++.|..++.....-++.
T Consensus 219 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 273 (341)
T 3zx6_A 219 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 273 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667888899999999999999999999999888888777665544433
No 50
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=38.46 E-value=1.4e+02 Score=24.33 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 218 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 218 (256)
...+.+-...+..|...+.++...+.+++..+.+|...++.|..++.....-++.
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 139 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555567888899999999999999999999999999988887765544443
No 51
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=38.24 E-value=93 Score=21.16 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 173 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 173 ~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
.+.++...+.|+..|+.+=-.-|.+-|+-||.+++..+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456666777777777777777788889988888766543
No 52
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=36.33 E-value=1.3e+02 Score=22.24 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 164 DSYMQSRAEALQNVESTIH----ELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 164 ~~~~~eR~~~i~~Ie~~i~----el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
..+++||-+.+.+|-..|. +++++|..++.+=.....+=..++.|+..--..++.+...|++-.+.
T Consensus 3 p~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~ 72 (115)
T 4gwp_A 3 PPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 72 (115)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888877766554 44566666665544455566677788887777788888777776554
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.17 E-value=1.6e+02 Score=26.38 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025191 4 QELTAVIKQDITALNSAVVDLQLV 27 (256)
Q Consensus 4 e~LT~~Ik~~i~~~~~~I~~L~~~ 27 (256)
.+....++..|..+.+.|+.+++.
T Consensus 59 dk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777654
No 54
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.75 E-value=91 Score=21.22 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191 43 STTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL 81 (256)
Q Consensus 43 ~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~ 81 (256)
-.+-+..|++||+.+...|...|..-.+|+-.-+.+...
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778899999999999999988766665554544444
No 55
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=33.14 E-value=55 Score=18.58 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 025191 240 IFFVLIFFLMIFLFFV 255 (256)
Q Consensus 240 i~~vliv~~l~~i~~~ 255 (256)
+++++.+.+++|.+|+
T Consensus 8 ~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 8 FIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3444444455555554
No 56
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.46 E-value=1.1e+02 Score=19.87 Aligned_cols=38 Identities=8% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 174 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 174 i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
+..+...+.++..++.+=-.-|.+-|+-|+.|++-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888888876554
No 57
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=30.08 E-value=58 Score=19.97 Aligned_cols=9 Identities=56% Similarity=1.102 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 025191 244 LIFFLMIFL 252 (256)
Q Consensus 244 liv~~l~~i 252 (256)
+|++++++|
T Consensus 39 licllli~i 47 (52)
T 1fjk_A 39 LIFLLLICI 47 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 58
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=29.75 E-value=2e+02 Score=22.40 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025191 4 QELTAVIKQDITALNSAVVDLQLVSNS 30 (256)
Q Consensus 4 e~LT~~Ik~~i~~~~~~I~~L~~~~~~ 30 (256)
-..+..|+..+..++..+..|+...+.
T Consensus 8 ~~~~~~i~~~i~~i~~~v~~L~~l~~~ 34 (196)
T 1fio_A 8 MNKISQINRDLDKYDHTINQVDSLHKR 34 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999987655
No 59
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.02 E-value=1.6e+02 Score=21.05 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025191 3 IQELTAVIKQDITALNSAVVDLQLVSNS 30 (256)
Q Consensus 3 Ie~LT~~Ik~~i~~~~~~I~~L~~~~~~ 30 (256)
+..-+.+.+.+|.++++.|+.|+...+.
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999987543
No 60
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.73 E-value=1.1e+02 Score=19.24 Aligned_cols=30 Identities=7% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025191 200 EIAIRIDENMDDTMANVEGAQGALLKYLNS 229 (256)
Q Consensus 200 e~id~Id~nv~~a~~~v~~g~~eL~kA~~~ 229 (256)
..||.+..+|......|..+..|-.+|.++
T Consensus 18 ~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 18 AKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666777777777666654
No 61
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.23 E-value=1.9e+02 Score=21.65 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCC---CCCcchhhhHHHHHHHHHHHHHHHhH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNS--RND---GISSDTTSHSTTVVDDLKNRLMSATK 59 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~--~~~---~~~~~~~~~~~nVv~~L~~~l~~~s~ 59 (256)
|+..++.+++..+..+.-.|..|.+.+.- ..+ ..+..+..-+...+..+..++.++-.
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888876542 111 13445555666666666666665543
No 62
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.77 E-value=1.6e+02 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=16.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhHHH
Q 025191 36 SSDTTSHSTTVVDDLKNRLMSATKEF 61 (256)
Q Consensus 36 ~~~~~~~~~nVv~~L~~~l~~~s~~F 61 (256)
+..+...+...+..|..++..+-..|
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666776666666665554
No 63
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=27.35 E-value=67 Score=19.45 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 025191 240 IFFVLIFFLMIFL 252 (256)
Q Consensus 240 i~~vliv~~l~~i 252 (256)
+..++++++++|+
T Consensus 26 ~gt~~~~~~ll~m 38 (43)
T 1qle_D 26 WVSILSIAVLVFL 38 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 64
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.19 E-value=1.2e+02 Score=22.27 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCcchhhhHHHHHHHHHHHHHHHh
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND---GISSDTTSHSTTVVDDLKNRLMSAT 58 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~---~~~~~~~~~~~nVv~~L~~~l~~~s 58 (256)
.|++|-.+|+.-=..+--..++|+...+.... ..|+..-.-+..+|.+|..++.++-
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778877777777777777765432211 1455667778889999988887653
No 65
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=25.41 E-value=2.7e+02 Score=22.55 Aligned_cols=11 Identities=0% Similarity=0.172 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 025191 7 TAVIKQDITAL 17 (256)
Q Consensus 7 T~~Ik~~i~~~ 17 (256)
+..+......+
T Consensus 13 ~~~i~~i~~~~ 23 (213)
T 3g67_A 13 NRLFQELVGDF 23 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 66
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=25.41 E-value=1.2e+02 Score=18.58 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025191 44 TTVVDDLKNRLMSATKEFKEVLTMRTENL 72 (256)
Q Consensus 44 ~nVv~~L~~~l~~~s~~Fr~~q~~~~~~l 72 (256)
.+-+..|++||+.+...|...|..-.+++
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999988887655554
No 67
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.93 E-value=2e+02 Score=20.85 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCcchhhhHHHHHHHHHHHHHHHhHHHHH
Q 025191 2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND---GISSDTTSHSTTVVDDLKNRLMSATKEFKE 63 (256)
Q Consensus 2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~---~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~ 63 (256)
.|++|-.+|+.-=..+--..++|+...+.... ..+++.-.-+..+|.+|..++.++-...-+
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777666666666677665432211 145667778889999999999876544433
No 68
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=24.35 E-value=1.4e+02 Score=19.03 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
..+.++...+.|+..++.+=-.-|.+-|+-||.+++..+.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~ 43 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678889999999999998888899999999988766554
No 69
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.33 E-value=2.3e+02 Score=20.28 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191 47 VDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 80 (256)
Q Consensus 47 v~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~ 80 (256)
.+.-.+....++..|++++..|...-...+++++
T Consensus 90 ~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 90 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888888888888776555555554
No 70
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.00 E-value=1.8e+02 Score=18.81 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 025191 172 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 211 (256)
Q Consensus 172 ~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~ 211 (256)
..+.++...+.|+..|+.+=-.-|.+-|+-||.+.+..+.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567777888888888877777788888888887765443
Done!