Query 025192
Match_columns 256
No_of_seqs 171 out of 1133
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 4.1E-61 8.8E-66 434.9 22.3 253 1-255 106-373 (408)
2 PLN03133 beta-1,3-galactosyltr 100.0 2.5E-53 5.5E-58 404.3 22.6 221 23-253 380-608 (636)
3 KOG2287 Galactosyltransferases 100.0 3E-53 6.6E-58 385.7 21.2 215 27-250 94-312 (349)
4 PF01762 Galactosyl_T: Galacto 100.0 1.8E-51 4E-56 346.3 16.6 191 42-240 1-195 (195)
5 KOG2288 Galactosyltransferases 100.0 1.2E-48 2.7E-53 330.3 15.0 228 25-254 8-237 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.6E-34 5.6E-39 257.1 15.7 191 24-233 76-307 (382)
7 PF02434 Fringe: Fringe-like; 99.9 9.5E-23 2.1E-27 178.1 12.3 194 28-248 6-211 (252)
8 KOG2246 Galactosyltransferases 99.7 7E-17 1.5E-21 147.3 12.6 169 23-239 86-268 (364)
9 PLN03153 hypothetical protein; 99.5 6.1E-13 1.3E-17 124.2 16.8 208 3-248 99-321 (537)
10 KOG3708 Uncharacterized conser 97.5 0.00046 1E-08 64.8 8.8 93 115-230 84-182 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 97.4 0.0094 2E-07 50.1 14.4 187 29-237 2-200 (228)
12 TIGR03472 HpnI hopanoid biosyn 97.0 0.023 4.9E-07 52.4 14.0 190 27-237 40-243 (373)
13 TIGR03469 HonB hopene-associat 96.7 0.12 2.6E-06 47.8 16.4 193 24-233 36-248 (384)
14 PF01755 Glyco_transf_25: Glyc 96.7 0.028 6.1E-07 46.8 11.1 94 32-142 4-101 (200)
15 cd02520 Glucosylceramide_synth 96.7 0.21 4.6E-06 41.1 16.4 136 66-237 30-167 (196)
16 PRK11204 N-glycosyltransferase 95.9 0.55 1.2E-05 43.7 16.3 189 26-237 52-250 (420)
17 cd04196 GT_2_like_d Subfamily 95.9 0.29 6.3E-06 40.2 13.0 180 45-242 11-200 (214)
18 cd04186 GT_2_like_c Subfamily 95.7 0.64 1.4E-05 36.2 13.7 84 123-237 71-155 (166)
19 cd06439 CESA_like_1 CESA_like_ 95.5 0.33 7.1E-06 41.3 12.1 197 24-244 25-228 (251)
20 PF13506 Glyco_transf_21: Glyc 95.3 0.033 7.1E-07 45.9 5.1 125 111-240 16-147 (175)
21 cd04192 GT_2_like_e Subfamily 95.3 1.1 2.4E-05 37.0 14.5 161 67-240 29-204 (229)
22 PRK14583 hmsR N-glycosyltransf 95.1 1.2 2.6E-05 42.0 15.7 185 27-237 74-271 (444)
23 cd02510 pp-GalNAc-T pp-GalNAc- 95.0 1.8 3.9E-05 38.2 15.9 129 116-244 73-224 (299)
24 cd02525 Succinoglycan_BP_ExoA 94.9 2 4.3E-05 36.1 17.4 161 65-237 30-198 (249)
25 cd06421 CESA_CelA_like CESA_Ce 94.7 2.1 4.6E-05 35.6 15.6 124 118-246 76-212 (234)
26 PF00535 Glycos_transf_2: Glyc 94.7 0.54 1.2E-05 36.4 10.4 134 66-208 27-168 (169)
27 cd06433 GT_2_WfgS_like WfgS an 94.4 1.8 3.9E-05 34.8 13.3 117 115-236 64-183 (202)
28 cd06532 Glyco_transf_25 Glycos 94.2 0.58 1.3E-05 36.3 9.4 112 33-214 3-119 (128)
29 cd06427 CESA_like_2 CESA_like_ 94.1 0.71 1.5E-05 39.3 10.6 119 116-237 74-202 (241)
30 cd04185 GT_2_like_b Subfamily 94.0 2.8 6.1E-05 34.2 14.7 105 115-247 69-175 (202)
31 TIGR03111 glyc2_xrt_Gpos1 puta 93.5 1.3 2.8E-05 41.8 12.1 126 116-244 121-266 (439)
32 cd06423 CESA_like CESA_like is 93.5 0.95 2.1E-05 34.9 9.6 151 45-209 10-170 (180)
33 cd06435 CESA_NdvC_like NdvC_li 93.2 4.5 9.7E-05 33.9 14.4 116 116-237 72-199 (236)
34 PF04646 DUF604: Protein of un 93.2 0.12 2.7E-06 44.9 4.2 54 194-247 12-69 (255)
35 COG1215 Glycosyltransferases, 93.0 4.5 9.8E-05 37.4 14.8 191 28-237 54-255 (439)
36 cd04187 DPM1_like_bac Bacteria 92.8 1.1 2.3E-05 36.1 9.2 135 66-211 29-165 (181)
37 PF13632 Glyco_trans_2_3: Glyc 92.6 0.47 1E-05 38.8 6.9 114 129-246 1-125 (193)
38 cd02526 GT2_RfbF_like RfbF is 92.6 5.4 0.00012 33.3 15.0 127 115-243 65-202 (237)
39 cd04184 GT2_RfbC_Mx_like Myxoc 92.1 5.5 0.00012 32.3 15.8 115 117-239 74-193 (202)
40 cd06420 GT2_Chondriotin_Pol_N 91.6 5.9 0.00013 31.5 14.1 97 117-233 70-166 (182)
41 COG1216 Predicted glycosyltran 91.3 10 0.00022 33.7 16.2 149 94-246 55-221 (305)
42 PF10111 Glyco_tranf_2_2: Glyc 91.1 10 0.00022 33.4 14.5 165 64-235 32-210 (281)
43 cd04195 GT2_AmsE_like GT2_AmsE 90.7 4.4 9.6E-05 32.9 10.8 116 117-241 71-197 (201)
44 cd06442 DPM1_like DPM1_like re 90.2 9.3 0.0002 31.4 13.0 91 118-209 70-167 (224)
45 TIGR03030 CelA cellulose synth 90.1 5.3 0.00011 40.2 12.6 128 112-243 215-356 (713)
46 cd04191 Glucan_BSP_ModH Glucan 89.1 5.5 0.00012 34.7 10.5 196 32-240 3-224 (254)
47 PRK10714 undecaprenyl phosphat 88.1 5.6 0.00012 35.9 10.3 135 66-211 38-175 (325)
48 cd06437 CESA_CaSu_A2 Cellulose 87.0 17 0.00036 30.4 13.8 122 117-245 78-213 (232)
49 PRK14716 bacteriophage N4 adso 85.5 19 0.00042 34.8 12.8 108 126-237 158-279 (504)
50 cd02514 GT13_GLCNAC-TI GT13_GL 84.1 3.7 7.9E-05 37.5 6.9 92 116-222 87-185 (334)
51 cd06434 GT2_HAS Hyaluronan syn 80.7 31 0.00067 28.5 11.7 155 66-235 28-201 (235)
52 cd04179 DPM_DPG-synthase_like 80.5 16 0.00035 28.9 8.9 133 66-209 28-167 (185)
53 PRK11234 nfrB bacteriophage N4 80.0 38 0.00082 34.4 12.9 193 25-236 60-275 (727)
54 cd04190 Chitin_synth_C C-termi 78.0 5.5 0.00012 34.1 5.6 106 125-234 72-207 (244)
55 TIGR01556 rhamnosyltran L-rham 77.0 48 0.001 28.6 12.2 125 117-244 65-200 (281)
56 cd06913 beta3GnTL1_like Beta 1 76.3 38 0.00083 27.9 10.2 44 118-161 76-119 (219)
57 PLN02726 dolichyl-phosphate be 75.2 49 0.0011 27.9 12.9 158 66-238 40-209 (243)
58 cd04188 DPG_synthase DPG_synth 74.1 31 0.00068 28.2 9.1 169 65-246 29-207 (211)
59 PRK05454 glucosyltransferase M 73.3 48 0.001 33.4 11.5 197 23-237 119-346 (691)
60 PRK11498 bcsA cellulose syntha 72.6 89 0.0019 32.4 13.3 117 117-237 330-459 (852)
61 PRK10018 putative glycosyl tra 72.4 63 0.0014 28.5 11.0 35 117-151 76-110 (279)
62 PLN03181 glycosyltransferase; 70.5 27 0.00058 32.9 8.3 93 45-140 109-212 (453)
63 cd02522 GT_2_like_a GT_2_like_ 70.2 58 0.0013 26.5 14.8 107 118-235 64-175 (221)
64 PF13704 Glyco_tranf_2_4: Glyc 60.5 39 0.00086 24.1 6.2 47 95-143 41-88 (97)
65 cd06438 EpsO_like EpsO protein 59.5 89 0.0019 24.9 11.5 88 116-207 70-169 (183)
66 COG4092 Predicted glycosyltran 59.0 38 0.00083 30.1 6.6 80 64-149 36-117 (346)
67 cd00761 Glyco_tranf_GTA_type G 57.4 73 0.0016 23.3 12.8 83 116-232 67-150 (156)
68 PF03071 GNT-I: GNT-I family; 55.8 1E+02 0.0022 29.4 9.3 116 85-210 136-271 (434)
69 PHA01631 hypothetical protein 53.0 51 0.0011 27.0 6.0 94 92-211 37-133 (176)
70 PTZ00260 dolichyl-phosphate be 48.6 2.1E+02 0.0045 25.9 13.0 129 24-162 66-202 (333)
71 PLN03182 xyloglucan 6-xylosylt 46.8 1.1E+02 0.0024 28.8 8.0 93 45-139 106-210 (429)
72 PF09258 Glyco_transf_64: Glyc 42.8 27 0.00058 30.4 3.3 98 126-230 75-180 (247)
73 PF03490 Varsurf_PPLC: Variant 42.7 16 0.00035 23.6 1.3 27 49-78 9-35 (51)
74 PF03452 Anp1: Anp1; InterPro 41.0 1.6E+02 0.0035 26.1 7.8 88 64-152 54-168 (269)
75 PHA02688 ORF059 IMV protein VP 38.0 1.2E+02 0.0026 27.5 6.6 91 111-211 97-200 (323)
76 PRK10073 putative glycosyl tra 37.3 3.1E+02 0.0067 24.6 12.5 76 66-151 35-110 (328)
77 PF05637 Glyco_transf_34: gala 35.5 43 0.00093 28.9 3.4 31 110-140 60-90 (239)
78 cd06436 GlcNAc-1-P_transferase 32.8 25 0.00054 28.6 1.4 77 127-208 90-178 (191)
79 PF06306 CgtA: Beta-1,4-N-acet 31.5 64 0.0014 29.4 3.8 39 112-150 160-199 (347)
80 PF04666 Glyco_transf_54: N-Ac 30.9 2.3E+02 0.005 25.4 7.3 52 23-77 47-98 (297)
81 cd02511 Beta4Glucosyltransfera 26.8 88 0.0019 26.1 3.8 37 116-152 61-97 (229)
82 cd00218 GlcAT-I Beta1,3-glucur 26.4 2.7E+02 0.0058 24.0 6.6 83 115-205 81-172 (223)
83 COG5454 Predicted secreted pro 25.6 44 0.00096 24.0 1.4 23 33-55 39-62 (89)
84 KOG4357 Uncharacterized conser 25.1 1.1E+02 0.0024 24.0 3.6 45 25-76 64-114 (164)
85 PF13712 Glyco_tranf_2_5: Glyc 23.6 85 0.0018 26.6 3.1 30 115-144 43-72 (217)
86 KOG2571 Chitin synthase/hyalur 22.6 1.5E+02 0.0032 30.7 5.0 44 113-156 421-470 (862)
87 PLN02893 Cellulose synthase-li 21.5 2.9E+02 0.0063 28.2 6.7 24 125-148 297-321 (734)
88 COG3306 Glycosyltransferase in 20.5 1.1E+02 0.0023 26.9 3.1 42 192-233 154-196 (255)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.1e-61 Score=434.92 Aligned_cols=253 Identities=48% Similarity=0.874 Sum_probs=216.1
Q ss_pred CccccchhcCc--cCCCCCC----CCCCCCCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEee
Q 025192 1 MQLAAAGQEGF--KSKGSTD----TDDKDPKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIG 74 (256)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG 74 (256)
|.+|+|-+.++ +++.+++ ..+...+++++|+|+|+|+|+|++||++||+||++....+.+++...+++++|++|
T Consensus 106 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG 185 (408)
T PLN03193 106 MELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIG 185 (408)
T ss_pred HHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEee
Confidence 45677766555 4332222 33556777899999999999999999999999999765444455567899999999
Q ss_pred ecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCC
Q 025192 75 RSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK 154 (256)
Q Consensus 75 ~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~ 154 (256)
.+.+.++.+++.|++|+++|||||++ ||.|+|.||++||+++|+|+.++|+++|++|+|||+|||+++|+.+|......
T Consensus 186 ~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~ 264 (408)
T PLN03193 186 HSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKK 264 (408)
T ss_pred cCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCC
Confidence 98753357888999999999999988 89999999999999999999999999999999999999999999999887666
Q ss_pred CceEEEEeecCcceecC-CCCcccCCcccCC-CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhC
Q 025192 155 PRVYIGCMKSGDVFSEP-GHKWYEPDWWKFG-DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL 232 (256)
Q Consensus 155 ~~~y~G~~~~~~p~r~~-~~k~~~~~~~~~y-~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l 232 (256)
+++|+|++..+ |+|++ ..||+.|++|++. +.+.|||||+|+|||||+++++.|+.++..++.+++|||++|+|+.+|
T Consensus 265 ~rlYiG~m~~g-Pvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L 343 (408)
T PLN03193 265 PRVYIGCMKSG-PVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGL 343 (408)
T ss_pred CCEEEEecccC-ccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccC
Confidence 68999999766 55654 6667778777654 679999999999999999999999988889999999999999999999
Q ss_pred CCeEecCCCeecCCCCC-------CCcccC
Q 025192 233 DVKYLNEGKFCCSSWSS-------GAICAG 255 (256)
Q Consensus 233 ~v~~~~~~~f~~~~~~~-------~~~~~~ 255 (256)
+|+++|+++||+++++. +++|+.
T Consensus 344 ~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~ 373 (408)
T PLN03193 344 DVEHIDDRRLCCGTPPDCEWKAQAGNICVA 373 (408)
T ss_pred CceeeecccccCCCCccccccccCCCeeEE
Confidence 99999999999987655 788874
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.5e-53 Score=404.25 Aligned_cols=221 Identities=25% Similarity=0.425 Sum_probs=194.4
Q ss_pred CCCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCC
Q 025192 23 DPKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDH 102 (256)
Q Consensus 23 ~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d 102 (256)
.+..+++|+|+|+|+|+|++||++||+||++... ..+..++++|++|.+.+ +.++..|.+|+++|||||+. |
T Consensus 380 ~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-d 451 (636)
T PLN03133 380 SPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-P 451 (636)
T ss_pred CCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-e
Confidence 4456789999999999999999999999999643 12456899999999876 47788999999999999987 8
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeec-CcceecCCCCcccCCcc
Q 025192 103 HVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKS-GDVFSEPGHKWYEPDWW 181 (256)
Q Consensus 103 ~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~-~~p~r~~~~k~~~~~~~ 181 (256)
|.|+|+|||+||++++.|+..+++++|+||+|||+|||+++|+++|+.......+|+|++.. .+|+|++.+|||+|.+
T Consensus 452 F~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~- 530 (636)
T PLN03133 452 FVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE- 530 (636)
T ss_pred eechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH-
Confidence 99999999999999999998778999999999999999999999998776667799999854 5899999999999975
Q ss_pred cCCCCCCccccccCCeeeecHHHHHHHHHhc--CccCCCccChHHHHHHHh-----hCCCeEecCCCeecCCCCCCCcc
Q 025192 182 KFGDKKLYFRHASGEMYVISRALAKFISINR--SILRTYAHDDVSAGSWFL-----GLDVKYLNEGKFCCSSWSSGAIC 253 (256)
Q Consensus 182 ~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~--~~~~~~~~EDv~iG~~l~-----~l~v~~~~~~~f~~~~~~~~~~~ 253 (256)
.||.+.|||||+|+|||||+++|+.|+.++ ..+++|++||||+|+|+. ++.+.+.++.+|+..++..+.+|
T Consensus 531 -eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~ 608 (636)
T PLN03133 531 -EWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVV 608 (636)
T ss_pred -HCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEE
Confidence 789999999999999999999999999864 578999999999999986 34567788899988777655444
No 3
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-53 Score=385.67 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=196.3
Q ss_pred CceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCC
Q 025192 27 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 106 (256)
Q Consensus 27 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 106 (256)
.++++++|+|++++++||++||+|||+... ..+.+++++|++|.+.+.+ .++..|.+|++.|||||+. ||.|+
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dt 166 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDT 166 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccc
Confidence 379999999999999999999999999874 3567899999999998632 4578999999999999987 99999
Q ss_pred CCCchHHHHHHHHHHHhcC-CeeEEEEecCeeEEeHHHHHHHHhhc-CCCCceEEEEeec-CcceecCCCCcccCCcccC
Q 025192 107 PKEFPNKAKLFFAYAVDKW-DAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKF 183 (256)
Q Consensus 107 y~nl~~K~~~~l~w~~~~~-~~~~vlk~DDD~~vn~~~L~~~L~~~-~~~~~~y~G~~~~-~~p~r~~~~k~~~~~~~~~ 183 (256)
|.|||+|++++++|+.++| +++||+|+|||+|||+++|+++|... .+.+.+|+|.+.. .+|+|++.+|||+|+. +
T Consensus 167 y~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~--~ 244 (349)
T KOG2287|consen 167 YFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES--E 244 (349)
T ss_pred hhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH--H
Confidence 9999999999999999986 69999999999999999999999998 7888999999754 5899999999999986 8
Q ss_pred CCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhC-CCeEecCCCeecCCCCCC
Q 025192 184 GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKFCCSSWSSG 250 (256)
Q Consensus 184 y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l-~v~~~~~~~f~~~~~~~~ 250 (256)
||.+.|||||+|+|||+|+++|+.|++++.+.+.+++|||++|+|++.. ||.++++++|......-.
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~ 312 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFD 312 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCC
Confidence 8999999999999999999999999999999999999999999999877 999999999766654333
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.8e-51 Score=346.26 Aligned_cols=191 Identities=26% Similarity=0.346 Sum_probs=171.4
Q ss_pred hhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHH
Q 025192 42 NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYA 121 (256)
Q Consensus 42 ~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~ 121 (256)
+||++||+||++.... ...+++++|++|.+.+.+..+++.|++|+++|+|||+. ||.|+|.||++|++++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~~-----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF-----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc-----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence 5899999999998642 35789999999999843356788899999999999987 99999999999999999999
Q ss_pred HhcCC-eeEEEEecCeeEEeHHHHHHHHhhc--CCCCceEEEE-eecCcceecCCCCcccCCcccCCCCCCccccccCCe
Q 025192 122 VDKWD-AEYYAKVNDDVYVNIDSLGATLATH--LDKPRVYIGC-MKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 197 (256)
Q Consensus 122 ~~~~~-~~~vlk~DDD~~vn~~~L~~~L~~~--~~~~~~y~G~-~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~g 197 (256)
.++|+ ++|++|+|||+|||+++|.++|... .+..+.+.|. ...++|+|++.+|||+|++ .||.+.|||||+|+|
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~--~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE--EYPDDYYPPYCSGGG 152 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee--ecccccCCCcCCCCe
Confidence 99985 9999999999999999999999987 3334445555 5667899999999999986 889999999999999
Q ss_pred eeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEecCC
Q 025192 198 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 240 (256)
Q Consensus 198 yvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~ 240 (256)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999875
No 5
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=330.29 Aligned_cols=228 Identities=52% Similarity=1.009 Sum_probs=211.1
Q ss_pred CCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCC
Q 025192 25 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 104 (256)
Q Consensus 25 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 104 (256)
+++++++|+|.|++++..||+.+|+||+.....++++++..+|.++|++|.... +++.+..|++|.++|+|.|.+++.+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~-g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATL-GASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCc-cHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999777788888899999999999443 3688999999999999999995599
Q ss_pred CCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCCcccCC
Q 025192 105 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG 184 (256)
Q Consensus 105 D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y 184 (256)
|.|.+|+.||++++.++..+++++|++|+|||+|||+..|...|.....++++|+||++.++++.++.+|||+|+ |++.
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988888999999999999999999999999 7886
Q ss_pred CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEecCCCeecCCC--CCCCccc
Q 025192 185 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW--SSGAICA 254 (256)
Q Consensus 185 ~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~~--~~~~~~~ 254 (256)
....|.+|+.|++|+||++++..|..++..++.+..|||.+|-|+.+|+|+++|++++|+..+ ..+++|+
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~ 237 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCA 237 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceee
Confidence 654499999999999999999999999888999999999999999999999999999999987 4556665
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.6e-34 Score=257.13 Aligned_cols=191 Identities=18% Similarity=0.295 Sum_probs=156.2
Q ss_pred CCCCceEEEEEEcCCCC--hhhHHHHHHHhhcCchhhhccc-CCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeee
Q 025192 24 PKKRPLVVIGILTRFGR--KNNRDAIRKAWMGTGAALKKRE-NEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFIL 100 (256)
Q Consensus 24 ~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~~l~~~~-~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~ 100 (256)
.+++-.++++|+|..++ +.||++.|+||.+.....++-+ -...+-++|++|.+++.+.+.++.|.+|+++|||||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 45677899999999988 8899999999999864211111 13467789999999985558899999999999999987
Q ss_pred CCC------------------CCCCCCchHHHHHHHHHHHhcC-CeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEE
Q 025192 101 DHH------------------VEAPKEFPNKAKLFFAYAVDKW-DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 161 (256)
Q Consensus 101 ~d~------------------~D~y~nl~~K~~~~l~w~~~~~-~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~ 161 (256)
+| .|++.++|+||+++++|+...| +++||+|+|||+|||++++++.|+.. +...+|+|.
T Consensus 156 -pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 156 -PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred -ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 89 6777889999999999999997 89999999999999999999999775 555699998
Q ss_pred eec-CcceecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHhcCc--c---------------CCCccChH
Q 025192 162 MKS-GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSI--L---------------RTYAHDDV 223 (256)
Q Consensus 162 ~~~-~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~--~---------------~~~~~EDv 223 (256)
+.. ..|.| +.+||||+|+||+||+++++.|+...+. + -.+..||+
T Consensus 234 v~~~~~p~R-----------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDi 296 (382)
T PTZ00210 234 YNYYNRIWR-----------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDV 296 (382)
T ss_pred eCCCCcccc-----------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHH
Confidence 753 23333 2359999999999999999999976322 1 23679999
Q ss_pred HHHHHH-hhCC
Q 025192 224 SAGSWF-LGLD 233 (256)
Q Consensus 224 ~iG~~l-~~l~ 233 (256)
++|.+| .+++
T Consensus 297 MvG~vLr~~~k 307 (382)
T PTZ00210 297 MVGMILREKVV 307 (382)
T ss_pred HHHHHHHHhcC
Confidence 999999 4543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.89 E-value=9.5e-23 Score=178.11 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=102.1
Q ss_pred ceEEEEEEcCCCChhhH-HHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCC
Q 025192 28 PLVVIGILTRFGRKNNR-DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 106 (256)
Q Consensus 28 ~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 106 (256)
-+|+|+|+|++++.+.| .+|++||++.+.. . .|+..... +..|..+ .-.+++ .+++..+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~~------d~~l~~~--~~~~l~-~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDAE------DPSLPTV--TGVHLV-NPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEE-E------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCcc------ccccccc--cccccc-cCCCcch
Confidence 47899999999876555 8999999999742 2 24322221 2333333 223444 4566666
Q ss_pred CCCchHHHHHHHHHHHhc-CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCC-CcccCCcccCC
Q 025192 107 PKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGH-KWYEPDWWKFG 184 (256)
Q Consensus 107 y~nl~~K~~~~l~w~~~~-~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~-k~~~~~~~~~y 184 (256)
+...+++.++.+.+-... .+.+|++++|||+||++++|.++|...++..++|+|+.....+...... ....+
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------ 139 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------ 139 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc------
Confidence 655555556555553322 5789999999999999999999999999999999999654333221000 00000
Q ss_pred CCCCccccc-cCCeeeecHHHHHHHHHhc--Cc-cC----CCccChHHHHHHHhh-CCCeEecCCCeecCCCC
Q 025192 185 DKKLYFRHA-SGEMYVISRALAKFISINR--SI-LR----TYAHDDVSAGSWFLG-LDVKYLNEGKFCCSSWS 248 (256)
Q Consensus 185 ~~~~yP~y~-~G~gyvlS~~~v~~l~~~~--~~-~~----~~~~EDv~iG~~l~~-l~v~~~~~~~f~~~~~~ 248 (256)
+...| .|+ +|+||+||+.++++|.... .. .. .-..||+.+|.|+.. +||+.+|++.||.+.+.
T Consensus 140 ~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 140 KDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred CcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 11222 456 5799999999999995421 11 11 224899999999988 99999999999999875
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.71 E-value=7e-17 Score=147.28 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=130.3
Q ss_pred CCCCCceEEEEEEcCCCChhhH-HHHHHHhhcCchhhhcccCCCcEEEEEEe---eecCCCCCcchhhhhhHHhhCCcee
Q 025192 23 DPKKRPLVVIGILTRFGRKNNR-DAIRKAWMGTGAALKKRENEKGIITRFVI---GRSANRGDSLDQDIDSENKQTNDFF 98 (256)
Q Consensus 23 ~~~~~~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~l~~~~~~~~i~~~Fvv---G~~~~~~~~~~~~l~~E~~~~~DIl 98 (256)
--..+.+|++.|+|++.+...| +.+-+||++++.. ..|+- ++.. ..+.-|
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~~v- 139 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFPTV- 139 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCcee-
Confidence 4455788999999998877765 6999999999842 33443 2222 223333
Q ss_pred eeCCCCCCCCCchHHHHHHHHHHHhc--CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcc
Q 025192 99 ILDHHVEAPKEFPNKAKLFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWY 176 (256)
Q Consensus 99 ~~~d~~D~y~nl~~K~~~~l~w~~~~--~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~ 176 (256)
.. +..|+|+++..|+..+++++.++ .+++|++|+|||||+.++||..+|..+++++++|+|+.... +
T Consensus 140 ~~-~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~----------~ 208 (364)
T KOG2246|consen 140 YY-NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS----------Y 208 (364)
T ss_pred ec-cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc----------c
Confidence 35 78999999999999999999976 58999999999999999999999999999999999985321 1
Q ss_pred cCCcccCCCCCCccccc-cCCeeeecHHHHHHHHHh----cCccCC-C--ccChHHHHHHHhhCCCeEecC
Q 025192 177 EPDWWKFGDKKLYFRHA-SGEMYVISRALAKFISIN----RSILRT-Y--AHDDVSAGSWFLGLDVKYLNE 239 (256)
Q Consensus 177 ~~~~~~~y~~~~yP~y~-~G~gyvlS~~~v~~l~~~----~~~~~~-~--~~EDv~iG~~l~~l~v~~~~~ 239 (256)
.. .. |. +|+||++|+++.+.+++. ...++. . ..||.-||.|+..+||...+.
T Consensus 209 ~~--------~~---y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 209 FQ--------NG---YSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred cc--------cc---cccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 10 11 33 679999999999887763 222222 3 399999999999999988877
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.51 E-value=6.1e-13 Score=124.17 Aligned_cols=208 Identities=15% Similarity=0.086 Sum_probs=127.6
Q ss_pred cccchhcCccCCCCCCCCCCCCCCCceEEEEEEcCCCChh-hHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCC
Q 025192 3 LAAAGQEGFKSKGSTDTDDKDPKKRPLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGD 81 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~ 81 (256)
+..++.+++.+++.+.. ..+..--.|+++|.++.+... |+..|+.+|..... =..+|+.....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~----------rg~v~ld~~~~~~-- 164 (537)
T PLN03153 99 LDHFRNRSLSEIERLKV--EAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM----------RGHVWLEEQVSPE-- 164 (537)
T ss_pred cccccccccCCCCCccc--CCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccc----------eeEEEecccCCCC--
Confidence 34445556555443322 233344578888988887664 55899999987531 1255655443321
Q ss_pred cchhhhhhHHhhCCceeeeC-C---CC-CCCCCchHHH-H-HHHHHH-Hh-cCCeeEEEEecCeeEEeHHHHHHHHhhcC
Q 025192 82 SLDQDIDSENKQTNDFFILD-H---HV-EAPKEFPNKA-K-LFFAYA-VD-KWDAEYYAKVNDDVYVNIDSLGATLATHL 152 (256)
Q Consensus 82 ~~~~~l~~E~~~~~DIl~~~-d---~~-D~y~nl~~K~-~-~~l~w~-~~-~~~~~~vlk~DDD~~vn~~~L~~~L~~~~ 152 (256)
.....| --|. ++ | |. ++..+..... + .+.... .. .++++|++++|||||+.+++|+++|..++
T Consensus 165 ~~~~~~-------P~i~-is~d~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YD 236 (537)
T PLN03153 165 EGDDSL-------PPIM-VSEDTSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYD 236 (537)
T ss_pred CCcCCC-------CCEE-eCCCcccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcC
Confidence 011111 0111 21 1 10 1112222211 1 122222 22 37999999999999999999999999999
Q ss_pred CCCceEEEEeecCcceecCCCCcccCCcccCCCCCCccccc-cCCeeeecHHHHHHHHHhcCcc----CCCccChHHHHH
Q 025192 153 DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHA-SGEMYVISRALAKFISINRSIL----RTYAHDDVSAGS 227 (256)
Q Consensus 153 ~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~-~G~gyvlS~~~v~~l~~~~~~~----~~~~~EDv~iG~ 227 (256)
+++..|+|....... ... .+ .| .|+ +|+||+||+.+++.|.+..... +...-+|.-||.
T Consensus 237 ptkp~YIGs~Se~~~--------qn~----~f---~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~ 300 (537)
T PLN03153 237 PSEMVYVGGPSESHS--------ANS----YF---SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHA 300 (537)
T ss_pred CCCCEEecccccccc--------ccc----cc---cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHH
Confidence 999999997532110 000 00 01 234 7899999999999988753222 223468999999
Q ss_pred HHhhCCCeEecCCCeecCCCC
Q 025192 228 WFLGLDVKYLNEGKFCCSSWS 248 (256)
Q Consensus 228 ~l~~l~v~~~~~~~f~~~~~~ 248 (256)
|+..+||...+.++||+.+..
T Consensus 301 CL~elGV~LT~~~gfhQ~D~~ 321 (537)
T PLN03153 301 CITELGVPLSREPGFHQWDIR 321 (537)
T ss_pred HHHHcCCCceecCCccccccC
Confidence 999999999999999998863
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00046 Score=64.82 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=70.8
Q ss_pred HHHHHHHHhc--CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCCcccCCCCCCcccc
Q 025192 115 KLFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRH 192 (256)
Q Consensus 115 ~~~l~w~~~~--~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y 192 (256)
.+.++++.++ -+++|++-+-|++|||...|++++...+-+.++|+|.-..+ ....
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~-------------------gs~r---- 140 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED-------------------GSGR---- 140 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC-------------------ccCc----
Confidence 4557777777 48999999999999999999999999888889999942101 0112
Q ss_pred cc-CCeeeecHHHHHHHHHhcCcc-CCC--ccChHHHHHHHh
Q 025192 193 AS-GEMYVISRALAKFISINRSIL-RTY--AHDDVSAGSWFL 230 (256)
Q Consensus 193 ~~-G~gyvlS~~~v~~l~~~~~~~-~~~--~~EDv~iG~~l~ 230 (256)
|+ |.||+||+.++.+|-.+-.-+ +.+ .=.|+.+|.|+.
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 74 699999999999998763332 222 356799999996
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.36 E-value=0.0094 Score=50.14 Aligned_cols=187 Identities=13% Similarity=0.031 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCce--eeeCCCCCC
Q 025192 29 LVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDF--FILDHHVEA 106 (256)
Q Consensus 29 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI--l~~~d~~D~ 106 (256)
.|.|+|++.-....-++.|+.--.... ..+.++++...++. ...+.+++-.+.+... -++. .
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~---------~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~----~ 65 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY---------PRLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIR----R 65 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH---------HTEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC---------CCeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEee----c
Confidence 466667655443344445544432211 23666666544332 3344555545566553 2221 1
Q ss_pred CCCch--HHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhc-CCCCceEEEEeec--CcceecCCC-----Ccc
Q 025192 107 PKEFP--NKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKS--GDVFSEPGH-----KWY 176 (256)
Q Consensus 107 y~nl~--~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~-~~~~~~y~G~~~~--~~p~r~~~~-----k~~ 176 (256)
-.|.. .|. .++.++.+..+.+|++.+|||+.+.++-|..++... .+.-....|.... +...-.... .|+
T Consensus 66 ~~~~g~~~k~-~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF13641_consen 66 PRNPGPGGKA-RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWH 144 (228)
T ss_dssp ---HHHHHHH-HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EET
T ss_pred CCCCCcchHH-HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhh
Confidence 13322 233 345777777789999999999999998888888776 3333343343321 110000001 111
Q ss_pred cCCcccCCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 177 EPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 177 ~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
.... ......=..++.|++.++.+++++.+-.... ....||..++.-+...|.+..
T Consensus 145 ~~~~--~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~ 200 (228)
T PF13641_consen 145 LRFR--SGRRALGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIV 200 (228)
T ss_dssp TTS---TT-B----S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EE
T ss_pred hhhh--hhhcccceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEE
Confidence 1000 0001111245689999999999999863222 344699999988877765433
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.99 E-value=0.023 Score=52.40 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=100.2
Q ss_pred CceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCc--eeeeCCCC
Q 025192 27 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHV 104 (256)
Q Consensus 27 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~D--Il~~~d~~ 104 (256)
.+.+-|+|++.-....-.+.|+ +..++. -..+.++++...+++ ...+.+++=.+.|.+ |..+.+ .
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~~-~ 106 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVID-A 106 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEEC-C
Confidence 4456666665544333344443 233332 124778877665543 222333332355665 422211 1
Q ss_pred CCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCC-CCceEEEEeecCcceecCCCCcccC-----
Q 025192 105 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVFSEPGHKWYEP----- 178 (256)
Q Consensus 105 D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~-~~~~y~G~~~~~~p~r~~~~k~~~~----- 178 (256)
+. .....|.-...+ +.+..+.+|++..|+|+.+.++-|.+.+..... .-.+..|... ..+ ...|...
T Consensus 107 ~~-~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~-~~~----~~~~~~~l~~~~ 179 (373)
T TIGR03472 107 RR-HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR-GRP----VPGFWSRLGAMG 179 (373)
T ss_pred CC-CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc-CCC----CCCHHHHHHHHH
Confidence 11 222356655443 456678999999999999999998888877632 2122222211 111 1111100
Q ss_pred CcccCCCC------CCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 179 DWWKFGDK------KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 179 ~~~~~y~~------~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
..+.++|. ..-+.+|.|+++++.+++.+.+---.. ....-.||..+|.-+...|.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~v~ 243 (373)
T TIGR03472 180 INHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLRVV 243 (373)
T ss_pred hhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCeEE
Confidence 00001110 012356889999999999998863211 12223699999999987775443
No 13
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=96.69 E-value=0.12 Score=47.80 Aligned_cols=193 Identities=16% Similarity=0.093 Sum_probs=95.3
Q ss_pred CCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHH-hhCC---ceee
Q 025192 24 PKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSEN-KQTN---DFFI 99 (256)
Q Consensus 24 ~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~-~~~~---DIl~ 99 (256)
++..+.+-|+|++.-+...-.+.|+.--.+.. ....+++++...+++ . ..++.++. +.+. .+.+
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~y--------p~~~eIIVVDd~StD---~-T~~i~~~~~~~~~~~~~i~v 103 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDY--------PGKLHVILVDDHSTD---G-TADIARAAARAYGRGDRLTV 103 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCC--------CCceEEEEEeCCCCC---c-HHHHHHHHHHhcCCCCcEEE
Confidence 33455677767655443222333333221111 124677777666554 2 22333332 3333 4444
Q ss_pred eCCCCCCCCCchHHHH---HHHHHHHhc-CCeeEEEEecCeeEEeHHHHHHHHhhcCCCC-ceEEEEeecCcceecCCCC
Q 025192 100 LDHHVEAPKEFPNKAK---LFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKP-RVYIGCMKSGDVFSEPGHK 174 (256)
Q Consensus 100 ~~d~~D~y~nl~~K~~---~~l~w~~~~-~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~-~~y~G~~~~~~p~r~~~~k 174 (256)
+ ...+.-.+-..|.. .+++.+.+. .+.+|++.+|+|+.+.++.|.+.+......+ .+..|...... .....+
T Consensus 104 i-~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~ 180 (384)
T TIGR03469 104 V-SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEK 180 (384)
T ss_pred e-cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHH
Confidence 4 22221122234533 344544433 2389999999999999988888876653322 23222221100 000000
Q ss_pred ccc-----------CCcccCCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC
Q 025192 175 WYE-----------PDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 233 (256)
Q Consensus 175 ~~~-----------~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~ 233 (256)
... +..| .........++.|++.++++++.+++---.. ......||+.++.-+.+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 181 LLIPAFVFFFQKLYPFRW-VNDPRRRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHHHHHHHHHhcchhh-hcCCCccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 000 0000 0001112345679999999999998842211 1122489999998887665
No 14
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.68 E-value=0.028 Score=46.85 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=52.9
Q ss_pred EEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeC----CCCCCC
Q 025192 32 IGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD----HHVEAP 107 (256)
Q Consensus 32 i~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~----d~~D~y 107 (256)
|.|.|-+...+||+.|.+...... +.+-|+-|-.... ... .+....++.-.... ...-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~-----------~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLG-----------INFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC-----------CceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 456678888999999988766542 4466766665431 111 11111122111000 001111
Q ss_pred CCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHH
Q 025192 108 KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 142 (256)
Q Consensus 108 ~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~ 142 (256)
-.-.+-.+..++-+.+. +.++++-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11145567777777764 57899999999999864
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=96.68 E-value=0.21 Score=41.13 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=81.0
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCC--ceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTN--DFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 143 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~--DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~ 143 (256)
.+.+++|...+++ ...+.+++-.+.+. ++.++-. ..+ .....|.- .+..+.++.+.+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIG-GEK-VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEec-CCc-CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhH
Confidence 3778887766654 33344444445554 3322211 111 11223433 345556667899999999999998888
Q ss_pred HHHHHhhcCCCCceEEEEeecCcceecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChH
Q 025192 144 LGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDV 223 (256)
Q Consensus 144 L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv 223 (256)
|...+..... +. +|.+. +.++.|++.++.+++.+.+--.. .......||.
T Consensus 104 l~~l~~~~~~-~~--~~~v~--------------------------~~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLMD-PG--VGLVT--------------------------CLCAFGKSMALRREVLDAIGGFE-AFADYLAEDY 153 (196)
T ss_pred HHHHHHHhhC-CC--CCeEE--------------------------eecccCceeeeEHHHHHhccChH-HHhHHHHHHH
Confidence 8887766421 11 12111 00567899999999998875321 1222346999
Q ss_pred HHHHHHhhCCCeEe
Q 025192 224 SAGSWFLGLDVKYL 237 (256)
Q Consensus 224 ~iG~~l~~l~v~~~ 237 (256)
.++.-+...|.+..
T Consensus 154 ~l~~rl~~~G~~i~ 167 (196)
T cd02520 154 FLGKLIWRLGYRVV 167 (196)
T ss_pred HHHHHHHHcCCeEE
Confidence 99988876665444
No 16
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.91 E-value=0.55 Score=43.65 Aligned_cols=189 Identities=12% Similarity=0.058 Sum_probs=98.6
Q ss_pred CCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCC
Q 025192 26 KRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVE 105 (256)
Q Consensus 26 ~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D 105 (256)
+.+.+-|+|++.-+. +.|+++-.+-... .....+++.+...++ +...+.+++..+++..+..+ ...
T Consensus 52 ~~p~vsViIp~yne~----~~i~~~l~sl~~q-----~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i-~~~- 117 (420)
T PRK11204 52 EYPGVSILVPCYNEG----ENVEETISHLLAL-----RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVI-HLA- 117 (420)
T ss_pred CCCCEEEEEecCCCH----HHHHHHHHHHHhC-----CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEE-EcC-
Confidence 345677777765443 3455555443210 112345544433332 23344555555666666555 222
Q ss_pred CCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCC---CcccCCccc
Q 025192 106 APKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGH---KWYEPDWWK 182 (256)
Q Consensus 106 ~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~---k~~~~~~~~ 182 (256)
.|. .| -.+++.+.++.+.+|++..|+|+.+.++.|.+.++....++.+ |.+...+-+++..+ +....+...
T Consensus 118 --~n~-Gk-a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK11204 118 --ENQ-GK-ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRSTLLGRIQVGEFSS 191 (420)
T ss_pred --CCC-CH-HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccchhHHHHHHHHHHHH
Confidence 232 24 3446666677889999999999999999888888766322222 22211111111110 000000000
Q ss_pred CC-------CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 183 FG-------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 183 ~y-------~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
.. .....+..++|++.++.+++++.+--... ..-.||+.++.-+...|.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~---~~~~ED~~l~~rl~~~G~~i~ 250 (420)
T PRK11204 192 IIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWST---DMITEDIDISWKLQLRGWDIR 250 (420)
T ss_pred hhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCCC---CcccchHHHHHHHHHcCCeEE
Confidence 00 00011223578999999999988743211 234799999988876664433
No 17
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.89 E-value=0.29 Score=40.16 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=93.3
Q ss_pred HHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCC-ceeeeCCCCCCCCCchHHHHHHHHHHHh
Q 025192 45 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTN-DFFILDHHVEAPKEFPNKAKLFFAYAVD 123 (256)
Q Consensus 45 ~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~-DIl~~~d~~D~y~nl~~K~~~~l~w~~~ 123 (256)
+.|.++..+-... ....+.++++-..+++ ...+.+++-.+++. .+..+ ....+ .. ....+.....
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~-~~~~~-~G----~~~~~n~g~~ 76 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILI-RNGKN-LG----VARNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEE-eCCCC-cc----HHHHHHHHHH
Confidence 5667776665321 1225777777655443 32333443344443 33333 12221 12 1333344455
Q ss_pred cCCeeEEEEecCeeEEeHHHHHHHHhh-cC-CCCceEEEEee--c--CcceecCCCCcccCCc--ccCCCCCCccccccC
Q 025192 124 KWDAEYYAKVNDDVYVNIDSLGATLAT-HL-DKPRVYIGCMK--S--GDVFSEPGHKWYEPDW--WKFGDKKLYFRHASG 195 (256)
Q Consensus 124 ~~~~~~vlk~DDD~~vn~~~L~~~L~~-~~-~~~~~y~G~~~--~--~~p~r~~~~k~~~~~~--~~~y~~~~yP~y~~G 195 (256)
..+.+|++..|+|..+.++.|..++.. .. +...++.|... . +.+... ..+..... ...+.......++.|
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGE--SFFEYQKIKPGTSFNNLLFQNVVTG 154 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCccc--ccccccccCCccCHHHHHHhCccCC
Confidence 678999999999999998888888876 22 22234444321 1 111110 00000000 000011123356679
Q ss_pred CeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhC-CCeEecCCCe
Q 025192 196 EMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKF 242 (256)
Q Consensus 196 ~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l-~v~~~~~~~f 242 (256)
+++++.+++++.+....... ...||.++...+... .+..++.+.+
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~~~ 200 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEPLI 200 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchhHH
Confidence 99999999999886432222 457898887766554 3555555544
No 18
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.69 E-value=0.64 Score=36.21 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=55.4
Q ss_pred hcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce-EEEEeecCcceecCCCCcccCCcccCCCCCCccccccCCeeeec
Q 025192 123 DKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVIS 201 (256)
Q Consensus 123 ~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS 201 (256)
+..+.+|++..|||..+..+.+..++......+.. .++.. +.|++.+++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~ 120 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLVR 120 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEeee
Confidence 33478999999999999998888887653322211 11100 678999999
Q ss_pred HHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 202 RALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 202 ~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
+++++.+.--...... ..||..+..-+...|.+..
T Consensus 121 ~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~ 155 (166)
T cd04186 121 REVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVL 155 (166)
T ss_pred HHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEE
Confidence 9999877532222222 5799988876655554443
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.47 E-value=0.33 Score=41.35 Aligned_cols=197 Identities=17% Similarity=0.098 Sum_probs=94.8
Q ss_pred CCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCC
Q 025192 24 PKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHH 103 (256)
Q Consensus 24 ~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~ 103 (256)
......+-|+|++.-....-...|+.-..+.. ....+.++++...+++ ...+.+ .+.... .+.++ ..
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~d---~t~~~~-~~~~~~-~v~~i-~~ 91 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGSTD---GTAEIA-REYADK-GVKLL-RF 91 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCCc---cHHHHH-HHHhhC-cEEEE-Ec
Confidence 33444566667665544334455555544332 1123566666544332 222333 222221 33333 11
Q ss_pred CCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCC-CCceEEEEeecCcce-ecCCCCcc--cCC
Q 025192 104 VEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVF-SEPGHKWY--EPD 179 (256)
Q Consensus 104 ~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~-~~~~y~G~~~~~~p~-r~~~~k~~--~~~ 179 (256)
.+ | ..|. ..+....+....+|++.+|+|+.+..+-|.+++..... ...+..|......+. .......+ ...
T Consensus 92 ~~---~-~g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (251)
T cd06439 92 PE---R-RGKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYEN 166 (251)
T ss_pred CC---C-CChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHH
Confidence 21 2 1232 34455555666799999999999998888887777642 223444443211110 00000000 000
Q ss_pred ccc-CCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCe--EecCCCeec
Q 025192 180 WWK-FGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK--YLNEGKFCC 244 (256)
Q Consensus 180 ~~~-~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~--~~~~~~f~~ 244 (256)
.+. .......+..+.|+++++.+++.+ . .......||..++..+...|.+ ..+....++
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~rr~~~~----~--~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~ 228 (251)
T cd06439 167 WLKRAESRLGSTVGANGAIYAIRRELFR----P--LPADTINDDFVLPLRIARQGYRVVYEPDAVAYE 228 (251)
T ss_pred HHHHHHHhcCCeeeecchHHHhHHHHhc----C--CCcccchhHHHHHHHHHHcCCeEEeccccEEEE
Confidence 000 000012234467777778877666 1 1122347999999888766643 344444333
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.30 E-value=0.033 Score=45.95 Aligned_cols=125 Identities=16% Similarity=0.055 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCC-CCceEEEEeecCcceecCCCCc------ccCCcccC
Q 025192 111 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVFSEPGHKW------YEPDWWKF 183 (256)
Q Consensus 111 ~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~-~~~~y~G~~~~~~p~r~~~~k~------~~~~~~~~ 183 (256)
..|+-.++..+....+.++++..|+|+.|+++-|..++..... .-.+..+ +....+.+ +-| ++.-....
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~-~~~~~~~~---~~~~~l~~~~~~~~~~~ 91 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG-LPRGVPAR---GFWSRLEAAFFNFLPGV 91 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe-cccccCCc---CHHHHHHHHHHhHHHHH
Confidence 4777666666554468999999999999999999998877643 2222222 21111111 111 11000000
Q ss_pred CCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEecCC
Q 025192 184 GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 240 (256)
Q Consensus 184 y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~ 240 (256)
+..-.-.++|.|+++++.+++++.+- ....+...--||..+|..+...|.+..-.+
T Consensus 92 ~~a~~~~~~~~G~~m~~rr~~L~~~G-G~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 92 LQALGGAPFAWGGSMAFRREALEEIG-GFEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHHhcCCCceecceeeeEHHHHHHcc-cHHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 00012468899999999999998773 112233355999999999988887666444
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.25 E-value=1.1 Score=37.04 Aligned_cols=161 Identities=13% Similarity=-0.005 Sum_probs=83.9
Q ss_pred EEEEEEeeecCCCCCcchhhhh-hHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 67 IITRFVIGRSANRGDSLDQDID-SENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 67 i~~~FvvG~~~~~~~~~~~~l~-~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
+.++.|...+.+ ...+.++ .....+..+..+ .... -.| ..|. .++.+..+.+..+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~-~~~~-~~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKIL-NNSR-VSI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEe-eccC-ccc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 667666655443 2233343 112223344444 2222 122 2333 345666677889999999999999988888
Q ss_pred HHHhhcCC-CCceEEEEeecCcceecCCCCcccC--C-cc-------cCCCCCCccccccCCeeeecHHHHHHHHHhcCc
Q 025192 146 ATLATHLD-KPRVYIGCMKSGDVFSEPGHKWYEP--D-WW-------KFGDKKLYFRHASGEMYVISRALAKFISINRSI 214 (256)
Q Consensus 146 ~~L~~~~~-~~~~y~G~~~~~~p~r~~~~k~~~~--~-~~-------~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~ 214 (256)
+++..... ....+.|...... ...+... . .+ .......+|..+.|+++++++++.+.+---...
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~ 176 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFK-----GKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN 176 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecC-----CccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc
Confidence 88875432 2334555432110 0101000 0 00 000112356667899999999999998533222
Q ss_pred cCCCccChHHHHHHHh--hC-CCeEecCC
Q 025192 215 LRTYAHDDVSAGSWFL--GL-DVKYLNEG 240 (256)
Q Consensus 215 ~~~~~~EDv~iG~~l~--~l-~v~~~~~~ 240 (256)
.....||..++.-+. +. .+.....+
T Consensus 177 -~~~~~eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 177 -DHIASGDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred -cccccCCHHHHHHHHHhCCCCEEEeeCc
Confidence 223467776665443 43 34444433
No 22
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=95.09 E-value=1.2 Score=41.99 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=98.9
Q ss_pred CceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCC
Q 025192 27 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 106 (256)
Q Consensus 27 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 106 (256)
.+.+-|+|++.-+... |++|-.+-.. . ...+.+++.+...+++ ...+.+++..+++..+.++ ...
T Consensus 74 ~p~vsViIP~yNE~~~----i~~~l~sll~----q-~yp~~eIivVdDgs~D---~t~~~~~~~~~~~~~v~vv-~~~-- 138 (444)
T PRK14583 74 HPLVSILVPCFNEGLN----ARETIHAALA----Q-TYTNIEVIAINDGSSD---DTAQVLDALLAEDPRLRVI-HLA-- 138 (444)
T ss_pred CCcEEEEEEeCCCHHH----HHHHHHHHHc----C-CCCCeEEEEEECCCCc---cHHHHHHHHHHhCCCEEEE-EeC--
Confidence 4567777776654332 4444433221 0 1124666655544432 3344455545566665544 221
Q ss_pred CCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCC---CCcccCCcc--
Q 025192 107 PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPG---HKWYEPDWW-- 181 (256)
Q Consensus 107 y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~---~k~~~~~~~-- 181 (256)
.|. .|. .+++...+..+.+|++..|.|+.+..+.|.+.+.....+++ .|.+...+.++++. ++....+..
T Consensus 139 -~n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~ 213 (444)
T PRK14583 139 -HNQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSI 213 (444)
T ss_pred -CCC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHH
Confidence 122 243 45666667788999999999999999998888765532222 23332111111111 111100000
Q ss_pred --------cCCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 182 --------KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 182 --------~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
..+ .-+..++|.+.++.+++++.+--... ..-.||.-+|.-+...|.+..
T Consensus 214 ~~~~~~~~~~~---g~~~~~sG~~~~~rr~al~~vGg~~~---~~i~ED~dl~~rl~~~G~~i~ 271 (444)
T PRK14583 214 IGLIKRTQRVY---GQVFTVSGVVAAFRRRALADVGYWSP---DMITEDIDISWKLQLKHWSVF 271 (444)
T ss_pred HHHHHHHHHHh---CCceEecCceeEEEHHHHHHcCCCCC---CcccccHHHHHHHHHcCCeEE
Confidence 011 11223578899999999888743221 123699999988877765444
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.04 E-value=1.8 Score=38.21 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc-eEEEEeec--CcceecC--C------CCcccCCccc-C
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR-VYIGCMKS--GDVFSEP--G------HKWYEPDWWK-F 183 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~-~y~G~~~~--~~p~r~~--~------~k~~~~~~~~-~ 183 (256)
.+.....+....+|++..|+|+.+.++-|..++......+. +..|.+.. +.-.+.+ . -.|.....|. .
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPL 152 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccC
Confidence 34555555567899999999999998887777766533222 22222210 0000000 0 0010000000 0
Q ss_pred ---------CCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCCeec
Q 025192 184 ---------GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCC 244 (256)
Q Consensus 184 ---------y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~ 244 (256)
.+.....++++|+++++++++...+---.+.+.....||+-+..=+...| +.........|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H 224 (299)
T cd02510 153 PEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGH 224 (299)
T ss_pred CHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEE
Confidence 00123346778999999999999886433344444579998775554444 44444444444
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.90 E-value=2 Score=36.06 Aligned_cols=161 Identities=8% Similarity=-0.052 Sum_probs=82.8
Q ss_pred CcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHH
Q 025192 65 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 144 (256)
Q Consensus 65 ~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L 144 (256)
..++++.+.+.+.+ ...+.++...+++..+.++ .-.. ... -.++....+..+.+|++.+|+|..+.++-|
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i-~~~~--~~~----~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l 99 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLI-DNPK--RIQ----SAGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEE-eCCC--CCc----hHHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence 35677776655543 3344444444444445444 2111 111 134566666667899999999999998888
Q ss_pred HHHHhhcCCC-CceEEEEeec--CcceecC-----CCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHhcCccC
Q 025192 145 GATLATHLDK-PRVYIGCMKS--GDVFSEP-----GHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILR 216 (256)
Q Consensus 145 ~~~L~~~~~~-~~~y~G~~~~--~~p~r~~-----~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~ 216 (256)
...+...... .....|.... ..+.... ...+.....+........-.++.|++.++++++.+.+.-....
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 100 LELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8887654322 2333444321 1111000 0000000000000000001256788889999998887432222
Q ss_pred CCccChHHHHHHHhhCCCeEe
Q 025192 217 TYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 217 ~~~~EDv~iG~~l~~l~v~~~ 237 (256)
....||..++.-+...|.+..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred cCccchhHHHHHHHHcCcEEE
Confidence 234799999877766664443
No 25
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=94.72 E-value=2.1 Score=35.60 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=70.9
Q ss_pred HHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc--eEEEEee--cCcc----eecC--CCCcccCC-cccCCCC
Q 025192 118 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMK--SGDV----FSEP--GHKWYEPD-WWKFGDK 186 (256)
Q Consensus 118 l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~--~y~G~~~--~~~p----~r~~--~~k~~~~~-~~~~y~~ 186 (256)
+..+.+..+.+|++.+|+|+++.++.|..++.....++. ...|... .... .+.. ....+... .+ . ..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 153 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQP-G-RD 153 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHH-H-Hh
Confidence 344455557899999999999999988888876644232 2222211 1110 0000 00000000 00 0 00
Q ss_pred CCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCCeecCC
Q 025192 187 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSS 246 (256)
Q Consensus 187 ~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~ 246 (256)
.....++.|++.++++++++.+.--. .....||..++.-+...| +..+++....+..
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 12245678999999999999875322 224479999998776555 5556666655544
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.66 E-value=0.54 Score=36.36 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=65.7
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
.+.++++-..+++ ...+.+++-.+....+.++ ...+ |. -.-.++..+.++...+|++.+|||.++..+.|.
T Consensus 27 ~~eiivvdd~s~d---~~~~~~~~~~~~~~~i~~i-~~~~---n~--g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 27 DFEIIVVDDGSTD---ETEEILEEYAESDPNIRYI-RNPE---NL--GFSAARNRGIKHAKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp EEEEEEEECS-SS---SHHHHHHHHHCCSTTEEEE-EHCC---CS--HHHHHHHHHHHH--SSEEEEEETTEEE-TTHHH
T ss_pred CEEEEEecccccc---ccccccccccccccccccc-cccc---cc--cccccccccccccceeEEEEeCCCceEcHHHHH
Confidence 3566666555432 3344443333324444444 2232 32 133444445555566799999999999988776
Q ss_pred HHHhhcCC-CCceEEEEee-c--C-cceecCCC--CcccC-CcccCCCCCCccccccCCeeeecHHHHHHH
Q 025192 146 ATLATHLD-KPRVYIGCMK-S--G-DVFSEPGH--KWYEP-DWWKFGDKKLYFRHASGEMYVISRALAKFI 208 (256)
Q Consensus 146 ~~L~~~~~-~~~~y~G~~~-~--~-~p~r~~~~--k~~~~-~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l 208 (256)
.+++.... .....+|... . . ........ .+... ..........--.++.|++.++++++.+++
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 66665543 3345555532 1 1 11111111 01110 000011122344678899999999998865
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.43 E-value=1.8 Score=34.76 Aligned_cols=117 Identities=12% Similarity=-0.056 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcC--CCCceEEEEeec-CcceecCCCCcccCCcccCCCCCCccc
Q 025192 115 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKFGDKKLYFR 191 (256)
Q Consensus 115 ~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~--~~~~~y~G~~~~-~~p~r~~~~k~~~~~~~~~y~~~~yP~ 191 (256)
-.++..+.++++.+|++..|+|..+..+.+...+.... +...+..|.... ...... ...+..... .........
T Consensus 64 ~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~ 140 (202)
T cd06433 64 YDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPF--LDKFLLYGM 140 (202)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcch--hhhHHhhcC
Confidence 34556666777899999999999999988888874332 334455565321 100000 010000000 101123445
Q ss_pred cccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeE
Q 025192 192 HASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 236 (256)
Q Consensus 192 y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~ 236 (256)
++.|++.++++++.+.+..-... ....||..+..-+...|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~--~~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDES--YRIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchh--hCchhhHHHHHHHHHcCCce
Confidence 67788899999999888532222 22357887776665555433
No 28
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=94.18 E-value=0.58 Score=36.31 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=66.4
Q ss_pred EEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHh-----hCCceeeeCCCCCCC
Q 025192 33 GILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENK-----QTNDFFILDHHVEAP 107 (256)
Q Consensus 33 ~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~-----~~~DIl~~~d~~D~y 107 (256)
.|.|-+...+||+.+++..... ++.+-|+-|-.... .....+..... .++--+ .-+-
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l-----~~gE 64 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPL-----TPGE 64 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCC-----Chhh
Confidence 4667888889999999855443 24566666654431 11111111110 111111 1111
Q ss_pred CCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCCcccCCCCC
Q 025192 108 KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKK 187 (256)
Q Consensus 108 ~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~ 187 (256)
-.-.+..+..++-+.+. +.++.+-..||+.+..+
T Consensus 65 iGC~lSH~~~w~~~~~~-~~~~alIlEDDv~~~~~--------------------------------------------- 98 (128)
T cd06532 65 IGCFLSHYKLWQKIVES-NLEYALILEDDAILDPD--------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHHHHHHc-CCCeEEEEccCcEECCC---------------------------------------------
Confidence 12234556666666654 55789999999998766
Q ss_pred CccccccCCeeeecHHHHHHHHHhcCc
Q 025192 188 LYFRHASGEMYVISRALAKFISINRSI 214 (256)
Q Consensus 188 ~yP~y~~G~gyvlS~~~v~~l~~~~~~ 214 (256)
+..||++|++.+++|++....
T Consensus 99 ------~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ------GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ------CceEEEeCHHHHHHHHHhCCC
Confidence 336899999999999986544
No 29
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.07 E-value=0.71 Score=39.29 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCC-Cce-EEEE-eecCcceecCCCCcccCCcccC----C---C
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK-PRV-YIGC-MKSGDVFSEPGHKWYEPDWWKF----G---D 185 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~-~~~-y~G~-~~~~~p~r~~~~k~~~~~~~~~----y---~ 185 (256)
.++....++.+.+|++.+|+|+.+.++.|.+.+...... ..+ ++|. +...........+.+..+.+.. . .
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788999999999999999999988776432 232 2222 2111000000001000000000 0 0
Q ss_pred CCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 186 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 186 ~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
....+..++|++.++++++++.+.-... ....||..++.-+...|.+..
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~ 202 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTG 202 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEE
Confidence 1123345688899999999988753222 124799999988776665444
No 30
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.03 E-value=2.8 Score=34.20 Aligned_cols=105 Identities=16% Similarity=0.049 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcC-CCCceEEEEeecCcceecCCCCcccCCcccCCCCCCccccc
Q 025192 115 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHA 193 (256)
Q Consensus 115 ~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~-~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~ 193 (256)
-.+++++. ..+.+|++..|+|..+..+.|..++.... +.-.+..|.... ...
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--------------------~~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD--------------------PDG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc--------------------CCC------
Confidence 34556655 45789999999999999888777776653 211222221110 001
Q ss_pred cCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCe-EecCCCeecCCC
Q 025192 194 SGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK-YLNEGKFCCSSW 247 (256)
Q Consensus 194 ~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~-~~~~~~f~~~~~ 247 (256)
.++|.++++++++.+--..... ....||+.++.-+...|.. ......+.|...
T Consensus 122 ~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i~~~~~~~~h~~~ 175 (202)
T cd04185 122 SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGIYVPDAVVVHKTA 175 (202)
T ss_pred ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcEEecceEEEEccc
Confidence 3456889999998774221111 2346999998877655532 444444444443
No 31
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=93.54 E-value=1.3 Score=41.81 Aligned_cols=126 Identities=11% Similarity=0.078 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce--EEEEeecCc-ceecCCCC--cccCC-cccCC-----
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGD-VFSEPGHK--WYEPD-WWKFG----- 184 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~--y~G~~~~~~-p~r~~~~k--~~~~~-~~~~y----- 184 (256)
.++.++.++.+.+|++..|+|..+..+.|.+.+.....++.+ ..|.+...+ ......+. +.... .+-.|
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 456677777888999999999999999998888765433322 234432111 00000010 01110 00000
Q ss_pred ------CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhh-C--CCeEecCCCeec
Q 025192 185 ------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLG-L--DVKYLNEGKFCC 244 (256)
Q Consensus 185 ------~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~-l--~v~~~~~~~f~~ 244 (256)
....-+..++|++.++.++++.++.--.. ..-.||..++.-+.. . .+....+..+++
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~---~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS---ETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC---CCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 00112234678888999998877642211 123899999865532 2 344445555554
No 32
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.46 E-value=0.95 Score=34.94 Aligned_cols=151 Identities=8% Similarity=0.018 Sum_probs=74.8
Q ss_pred HHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhC-CceeeeCCCCCCCCCchHHHHHHHHHHHh
Q 025192 45 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQT-NDFFILDHHVEAPKEFPNKAKLFFAYAVD 123 (256)
Q Consensus 45 ~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~-~DIl~~~d~~D~y~nl~~K~~~~l~w~~~ 123 (256)
+.|+++-.+-... ....+.++.+...+++ ...+.+.++...+ ..++.+ ... .|.. ....+.++.+
T Consensus 10 ~~l~~~l~sl~~q-----~~~~~~iivvdd~s~d---~t~~~~~~~~~~~~~~~~~~-~~~---~~~g--~~~~~n~~~~ 75 (180)
T cd06423 10 AVIERTIESLLAL-----DYPKLEVIVVDDGSTD---DTLEILEELAALYIRRVLVV-RDK---ENGG--KAGALNAGLR 75 (180)
T ss_pred HHHHHHHHHHHhC-----CCCceEEEEEeCCCcc---chHHHHHHHhccccceEEEE-Eec---ccCC--chHHHHHHHH
Confidence 5666666554321 0134566665544433 3344444444333 223322 111 2211 2345556666
Q ss_pred cCCeeEEEEecCeeEEeHHHHHHHHhhcCCCC--ceEEEEeecC----cceecCC-CCcccCCcc--cCCCCCCcccccc
Q 025192 124 KWDAEYYAKVNDDVYVNIDSLGATLATHLDKP--RVYIGCMKSG----DVFSEPG-HKWYEPDWW--KFGDKKLYFRHAS 194 (256)
Q Consensus 124 ~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~--~~y~G~~~~~----~p~r~~~-~k~~~~~~~--~~y~~~~yP~y~~ 194 (256)
..+.+|++.+|+|..+..+.|..++......+ ....|..... ....... ..+...... ........+.++.
T Consensus 76 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
T cd06423 76 HAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLS 155 (180)
T ss_pred hcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecC
Confidence 67899999999999999887877745443222 2333333211 1111000 000000000 0000123456788
Q ss_pred CCeeeecHHHHHHHH
Q 025192 195 GEMYVISRALAKFIS 209 (256)
Q Consensus 195 G~gyvlS~~~v~~l~ 209 (256)
|.+++++++++..+-
T Consensus 156 g~~~~~~~~~~~~~g 170 (180)
T cd06423 156 GAFGAFRREALREVG 170 (180)
T ss_pred chHHHHHHHHHHHhC
Confidence 999999999998765
No 33
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=93.18 E-value=4.5 Score=33.88 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=65.5
Q ss_pred HHHHHHHhcC--CeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCC-ccc---CC-----
Q 025192 116 LFFAYAVDKW--DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD-WWK---FG----- 184 (256)
Q Consensus 116 ~~l~w~~~~~--~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~-~~~---~y----- 184 (256)
.++.++.+.. +.+|++..|+|+.+.++.|..++.... ++. +|.+......++....++... .|. .+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMV 148 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhc
Confidence 3566666663 479999999999999999998887754 222 122211001111111111000 000 00
Q ss_pred -CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 185 -DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 185 -~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
....--.++.|++.++++++++.+---... +..||.-++.-+...|.+..
T Consensus 149 ~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~---~~~eD~dl~~r~~~~G~~~~ 199 (236)
T cd06435 149 SRNERNAIIQHGTMCLIRRSALDDVGGWDEW---CITEDSELGLRMHEAGYIGV 199 (236)
T ss_pred cccccCceEEecceEEEEHHHHHHhCCCCCc---cccchHHHHHHHHHCCcEEE
Confidence 000001356899999999999988532222 34899999988776665443
No 34
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=93.18 E-value=0.12 Score=44.89 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=44.4
Q ss_pred cCCeeeecHHHHHHHHHhcC----ccCCCccChHHHHHHHhhCCCeEecCCCeecCCC
Q 025192 194 SGEMYVISRALAKFISINRS----ILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW 247 (256)
Q Consensus 194 ~G~gyvlS~~~v~~l~~~~~----~~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~~ 247 (256)
+|+|++||..+++.|.+... ..+.+.--|-.+..|+..+++.....++||+.+-
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di 69 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDI 69 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEee
Confidence 79999999999999997532 2233445799999999999999999999998764
No 35
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.97 E-value=4.5 Score=37.38 Aligned_cols=191 Identities=10% Similarity=-0.002 Sum_probs=107.6
Q ss_pred ceEEEEEEcCCCCh-hhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCC
Q 025192 28 PLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 106 (256)
Q Consensus 28 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 106 (256)
+.+-|+|++--++. --.+.++..=... -....++.+...+++ +..+.+++-.++++..+.+ ...
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~d---~~~~~~~~~~~~~~~~~~~-~~~-- 118 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGSTD---ETYEILEELGAEYGPNFRV-IYP-- 118 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCCh---hHHHHHHHHHhhcCcceEE-Eec--
Confidence 66777777665444 2223333322222 123667777664443 4455565556666533333 211
Q ss_pred CCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce-EEEEeec-Ccce-ecCCCCcccCCc---
Q 025192 107 PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKS-GDVF-SEPGHKWYEPDW--- 180 (256)
Q Consensus 107 y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-y~G~~~~-~~p~-r~~~~k~~~~~~--- 180 (256)
.+-...-..++.+.....+.++++..|-|+.+..+.|.+.+......+.. ..|.... ..+. ....++-..-+.
T Consensus 119 -~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSA 197 (439)
T ss_pred -cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhh
Confidence 01122235667777777779999999999999999999999887543333 3333210 0000 000000000000
Q ss_pred ----ccCCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 181 ----WKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 181 ----~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
+..-.....+.+|.|++.++.+++++.+.. ..+..--||..++..+...|.+-.
T Consensus 198 ~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~ 255 (439)
T COG1215 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVV 255 (439)
T ss_pred HHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEE
Confidence 000012235788999999999999998872 223344799999999986665444
No 36
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=92.82 E-value=1.1 Score=36.12 Aligned_cols=135 Identities=11% Similarity=0.087 Sum_probs=72.2
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
.+.++.+.+.+.+ ...+.++...+++..+.++ .... |. .| -.+++...++...+|++.+|+|.....+.|.
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i-~~~~---n~-G~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVI-RLSR---NF-GQ-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEE-EecC---CC-Cc-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 4666666555443 2233444444455555544 2222 21 12 2444555555667999999999999988888
Q ss_pred HHHhhcCCCCceEEEEeecC--cceecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHh
Q 025192 146 ATLATHLDKPRVYIGCMKSG--DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 211 (256)
Q Consensus 146 ~~L~~~~~~~~~y~G~~~~~--~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 211 (256)
.+++...+...+.+|..... ...+.-.++.+.......+ ...-+...|+++++++++++.+..-
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLS--GVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHc--CCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 88776544445666654211 1000000000000000011 1223456788899999999998754
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=92.64 E-value=0.47 Score=38.78 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=66.1
Q ss_pred EEEEecCeeEEeHHHHHHHHhhcCCCCc--eEEEEeecCcceecCCCCcccCCc-cc------CCCCCCccccccCCeee
Q 025192 129 YYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSGDVFSEPGHKWYEPDW-WK------FGDKKLYFRHASGEMYV 199 (256)
Q Consensus 129 ~vlk~DDD~~vn~~~L~~~L~~~~~~~~--~y~G~~~~~~p~r~~~~k~~~~~~-~~------~y~~~~yP~y~~G~gyv 199 (256)
||+.+|+|+.+..+-|.+.+.... ++. ..-|.+.. .+....-.++...+. +. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF-RNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe-cCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999988888877665 222 22222211 000000011111110 00 00112457788999999
Q ss_pred ecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCCeecCC
Q 025192 200 ISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSS 246 (256)
Q Consensus 200 lS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~ 246 (256)
+++++++.+.-.. -.....||..++.-+...| +..+++...++..
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~ 125 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEA 125 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeC
Confidence 9999999885222 2345579999998876555 5566666555443
No 38
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.58 E-value=5.4 Score=33.28 Aligned_cols=127 Identities=9% Similarity=-0.134 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHH---hhcCCCCc-eEEEEe-ecC-cceec---CCCCcccCCcccCCC
Q 025192 115 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATL---ATHLDKPR-VYIGCM-KSG-DVFSE---PGHKWYEPDWWKFGD 185 (256)
Q Consensus 115 ~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L---~~~~~~~~-~y~G~~-~~~-~p~r~---~~~k~~~~~~~~~y~ 185 (256)
-.+++++... +++|++..|+|+.+.++.|..++ ......+. ..+|.. ... ..... ....+..........
T Consensus 65 N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (237)
T cd02526 65 NIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEE 143 (237)
T ss_pred hHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccC
Confidence 3345554432 67999999999999988888885 32222222 223332 111 00000 000000000000000
Q ss_pred CCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCC--eEecCCCee
Q 025192 186 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLNEGKFC 243 (256)
Q Consensus 186 ~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~~~~~~~f~ 243 (256)
...-..++.|+|.++++++++.+---.... .+..||+.++.-+...|. ........+
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 111234566788899999998875322221 234789999877766654 333443433
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.13 E-value=5.5 Score=32.28 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=63.1
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcC--CCCceEEEEeec---CcceecCCCCcccCCcccCCCCCCccc
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS---GDVFSEPGHKWYEPDWWKFGDKKLYFR 191 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~--~~~~~y~G~~~~---~~p~r~~~~k~~~~~~~~~y~~~~yP~ 191 (256)
++..+.+....+|++..|+|..+.++.|...++... +...+..+.... ..... ..++.+.+ . ....+..
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~-~--~~~~~~~ 147 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPDW-S--PDLLLSQ 147 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCCC-C--HHHhhhc
Confidence 455555556789999999999999988888887652 222343332211 00000 01111111 0 0001111
Q ss_pred cccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEecC
Q 025192 192 HASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNE 239 (256)
Q Consensus 192 y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~ 239 (256)
=+.|++-++++++++.+---... ....||.-++.-+...|.+..+.
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~~~~ 193 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRIAHI 193 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceEEEc
Confidence 12455667899988877532122 33579998888777666554433
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=91.57 E-value=5.9 Score=31.49 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=60.2
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCCcccCCCCCCccccccCC
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGE 196 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~ 196 (256)
.+....+..+.+|++..|+|..+..+-|...++...+. ....|..... .. ..-.....|+
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~------------~~-------~~~~~~~~~~ 129 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLL------------NE-------KLTERGIRGC 129 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeec------------cc-------ccceeEeccc
Confidence 34555566778999999999999988888887766322 2333332110 00 0001334677
Q ss_pred eeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC
Q 025192 197 MYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 233 (256)
Q Consensus 197 gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~ 233 (256)
++++.+..+..+.--.+.......||+.++.=+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 8888888887554333333333589999987776666
No 41
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=91.30 E-value=10 Score=33.71 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=80.8
Q ss_pred CCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc-eEEEEe-ec-C-c--c
Q 025192 94 TNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR-VYIGCM-KS-G-D--V 167 (256)
Q Consensus 94 ~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~-~y~G~~-~~-~-~--p 167 (256)
+.++.++ ...++.-- ..=.-.+++.+...... |++-.++|+.+..+.|.++++.....+. ...|.. .. + + +
T Consensus 55 ~~~v~~i-~~~~NlG~-agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 131 (305)
T COG1216 55 FPNVRLI-ENGENLGF-AGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI 131 (305)
T ss_pred CCcEEEE-EcCCCccc-hhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch
Confidence 6788766 22222210 11112466666654222 9999999999999998888877654332 333432 11 1 1 1
Q ss_pred e-ecC-----CCCcccCCccc----CCCCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCC--e
Q 025192 168 F-SEP-----GHKWYEPDWWK----FGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--K 235 (256)
Q Consensus 168 ~-r~~-----~~k~~~~~~~~----~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~ 235 (256)
. +.. ...|..+.... ..+......+++|++.++++++++++---. .--.+..||+-++.=+..+|. .
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~d-e~~F~y~eD~D~~~R~~~~G~~i~ 210 (305)
T COG1216 132 DRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFD-ERFFIYYEDVDLCLRARKAGYKIY 210 (305)
T ss_pred heeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCC-cccceeehHHHHHHHHHHcCCeEE
Confidence 1 100 11121111000 001112222589999999999999997522 222346999999988877763 4
Q ss_pred EecCCCeecCC
Q 025192 236 YLNEGKFCCSS 246 (256)
Q Consensus 236 ~~~~~~f~~~~ 246 (256)
.+......|..
T Consensus 211 ~~p~a~i~H~~ 221 (305)
T COG1216 211 YVPDAIIYHKI 221 (305)
T ss_pred EeeccEEEEec
Confidence 44444444433
No 42
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=91.11 E-value=10 Score=33.35 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred CCcEEEEEEeeecCCCCCcchhhhhhHHhhCCce-eeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHH
Q 025192 64 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDF-FILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 142 (256)
Q Consensus 64 ~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI-l~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~ 142 (256)
...+.++++-+.+.. +..+.|.+-.+.++-+ ++..+.....-+ .-.+..-+.+..+.+|++..|.|+++.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~----~a~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFS----RAKARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcC----HHHHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 456777776655543 3346677777777766 322111111122 22344555666789999999999999999
Q ss_pred HHHHHHh---hcCCCC-ceEEEE-eecCcc----ee-cCCCCccc--CCcccCCCCCCcc-ccccCCeeeecHHHHHHHH
Q 025192 143 SLGATLA---THLDKP-RVYIGC-MKSGDV----FS-EPGHKWYE--PDWWKFGDKKLYF-RHASGEMYVISRALAKFIS 209 (256)
Q Consensus 143 ~L~~~L~---~~~~~~-~~y~G~-~~~~~p----~r-~~~~k~~~--~~~~~~y~~~~yP-~y~~G~gyvlS~~~v~~l~ 209 (256)
.|.+.+. .....+ .++++- ...... .. .....|.. -+.......+.+. ....|++.+++++.-..+-
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iG 184 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIG 184 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhC
Confidence 9999888 433222 333322 211110 00 00000100 0000000011111 2334599999999988886
Q ss_pred HhcCccCCCccChHHHHHHHhhCCCe
Q 025192 210 INRSILRTYAHDDVSAGSWFLGLDVK 235 (256)
Q Consensus 210 ~~~~~~~~~~~EDv~iG~~l~~l~v~ 235 (256)
=--+....+..||.-++.=|...+..
T Consensus 185 GfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 185 GFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCccccCCCcchHHHHHHHHHcCCc
Confidence 54455556789999888767666543
No 43
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.74 E-value=4.4 Score=32.86 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=62.8
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCC--CCceEEEEeec----CcceecCCCCcccCCc---ccCCCCC
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD--KPRVYIGCMKS----GDVFSEPGHKWYEPDW---WKFGDKK 187 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~--~~~~y~G~~~~----~~p~r~~~~k~~~~~~---~~~y~~~ 187 (256)
++..+....+.+|++..|+|.++.++.|...+..... ...++.|.... +.... .+. .+.. +..+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 146 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIG---KRR-LPTSHDDILKFARR 146 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeec---ccc-CCCCHHHHHHHhcc
Confidence 4555556678999999999999999888888876532 22344444321 11110 000 1100 0000000
Q ss_pred CccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCC
Q 025192 188 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGK 241 (256)
Q Consensus 188 ~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~ 241 (256)
. -+ ..|++.++.+++++.+--.. .....||..+...+...| +..++.+.
T Consensus 147 ~-~~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~~ 197 (201)
T cd04195 147 R-SP-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEIL 197 (201)
T ss_pred C-CC-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHHH
Confidence 1 11 24566777777776653221 225699999987775444 44444433
No 44
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=90.19 E-value=9.3 Score=31.44 Aligned_cols=91 Identities=8% Similarity=-0.046 Sum_probs=50.7
Q ss_pred HHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhh-cCCCCceEEEEee-cCcceecCCCCc--ccC---CcccCCCCCCcc
Q 025192 118 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HLDKPRVYIGCMK-SGDVFSEPGHKW--YEP---DWWKFGDKKLYF 190 (256)
Q Consensus 118 l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~-~~~~~~~y~G~~~-~~~p~r~~~~k~--~~~---~~~~~y~~~~yP 190 (256)
+....+....+|++.+|+|..+.++.|..++.. ..+...+..|... ..... .....+ +.+ ..+.......-.
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333344455699999999999999988888876 3444455556432 11110 000000 000 000000001123
Q ss_pred ccccCCeeeecHHHHHHHH
Q 025192 191 RHASGEMYVISRALAKFIS 209 (256)
Q Consensus 191 ~y~~G~gyvlS~~~v~~l~ 209 (256)
..+.|++.++++++++.+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 4577888899999999987
No 45
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=90.06 E-value=5.3 Score=40.25 Aligned_cols=128 Identities=18% Similarity=0.110 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce-EEEEee---cCcce-ecCCCCcccCCccc-CC-
Q 025192 112 NKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMK---SGDVF-SEPGHKWYEPDWWK-FG- 184 (256)
Q Consensus 112 ~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-y~G~~~---~~~p~-r~~~~k~~~~~~~~-~y- 184 (256)
.|. ..+..+.++.+.+|++..|.|+.+..+-|.+.+.....++.+ .++... +..++ ++-......+.+.. +|
T Consensus 215 ~KA-gnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~ 293 (713)
T TIGR03030 215 AKA-GNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYG 293 (713)
T ss_pred CCh-HHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHH
Confidence 453 245666777788999999999999999888877665323332 111110 11111 11000000010000 00
Q ss_pred ---C--CCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCe--EecCCCee
Q 025192 185 ---D--KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK--YLNEGKFC 243 (256)
Q Consensus 185 ---~--~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~--~~~~~~f~ 243 (256)
+ ...-..++.|++.++.+++++.+---.. ..-.||..++.-+...|.+ ..+++...
T Consensus 294 ~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 294 LIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 0 0011346779999999999988742211 1237999999998877755 44444443
No 46
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=89.06 E-value=5.5 Score=34.72 Aligned_cols=196 Identities=9% Similarity=-0.010 Sum_probs=97.4
Q ss_pred EEEEcCCCChh-hHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchh-------hhhhHHhhCCceeeeCCC
Q 025192 32 IGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQ-------DIDSENKQTNDFFILDHH 103 (256)
Q Consensus 32 i~V~S~~~~~~-rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~-------~l~~E~~~~~DIl~~~d~ 103 (256)
|+|++.-...+ -.+.++........ ..-...+.+ |++-.+++ ++... ++.+|....-.+.+.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI-~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~--- 72 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDF-FILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYR--- 72 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEE-EEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEE---
Confidence 56777666555 45666666542110 000124566 77755443 12111 122222222334333
Q ss_pred CCCCCCchHHHHHHHHHHHhc-CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccCC--c
Q 025192 104 VEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD--W 180 (256)
Q Consensus 104 ~D~y~nl~~K~~~~l~w~~~~-~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~~--~ 180 (256)
..-.|.-.|+-..-...... .+.+|++-.|.|+.+.++-|.+.+.....++. +|-+....-..+..+-|.--. +
T Consensus 73 -~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~ 149 (254)
T cd04191 73 -RRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFA 149 (254)
T ss_pred -EcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHH
Confidence 12223334554444443332 57899999999999999999998877532222 233321000111111000000 0
Q ss_pred ccCC-C--------CCCccccccCCeeeecHHHHHHHHHh-----cCcc-CCCccChHHHHHHHhhCCCeEecCC
Q 025192 181 WKFG-D--------KKLYFRHASGEMYVISRALAKFISIN-----RSIL-RTYAHDDVSAGSWFLGLDVKYLNEG 240 (256)
Q Consensus 181 ~~~y-~--------~~~yP~y~~G~gyvlS~~~v~~l~~~-----~~~~-~~~~~EDv~iG~~l~~l~v~~~~~~ 240 (256)
...| + +..--.+|.|...++.++++..+.-. ..-+ ...-.||..+|+.+...|-+-+-.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~ 224 (254)
T cd04191 150 NRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAP 224 (254)
T ss_pred HHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEcc
Confidence 0000 0 00012357799999999998875321 1111 2235899999999987775544333
No 47
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=88.14 E-value=5.6 Score=35.94 Aligned_cols=135 Identities=6% Similarity=-0.048 Sum_probs=70.0
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCc-eeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTND-FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 144 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~D-Il~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L 144 (256)
.+.++++-..+++ ...+.+++-.+.+++ ++.+ ....++- |. .+++-..++.+.+|++.+|.|...+++.+
T Consensus 38 ~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i-~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAI-LLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEE-EeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 4778888766654 223333333334444 3332 1222221 11 23334445567899999999999999999
Q ss_pred HHHHhhcCCCCceEEEEeec--CcceecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHh
Q 025192 145 GATLATHLDKPRVYIGCMKS--GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 211 (256)
Q Consensus 145 ~~~L~~~~~~~~~y~G~~~~--~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 211 (256)
.++++.......+..|.... .++.|.-.++.+.-.- +......++.+.+| .-++++++++.+...
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~-~~~~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLI-QRTTGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHH-HHHcCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 88887764333444444321 1222221112111000 00012234444433 348999999998653
No 48
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=86.98 E-value=17 Score=30.38 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=64.5
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccC-----Cc--cc-----CC
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP-----DW--WK-----FG 184 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~-----~~--~~-----~y 184 (256)
++....+..+.+|++.+|.|+.+.++.|...+.... .+. +|.+.......++...|... .. +. .+
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 456666677899999999999999999888554432 222 22221110111111112100 00 00 00
Q ss_pred CCCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCCeecC
Q 025192 185 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCS 245 (256)
Q Consensus 185 ~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~ 245 (256)
....+ ..+.|++-++.+++++.+---.. ....||+.++.-+...| +....+...++.
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~ 213 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAE 213 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccceeeee
Confidence 00111 12356666788888877642111 23479999998776665 444555444443
No 49
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=85.51 E-value=19 Score=34.78 Aligned_cols=108 Identities=9% Similarity=-0.017 Sum_probs=59.5
Q ss_pred CeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCc----ccCCcccC----CC---CCCcccccc
Q 025192 126 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW----YEPDWWKF----GD---KKLYFRHAS 194 (256)
Q Consensus 126 ~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~----~~~~~~~~----y~---~~~yP~y~~ 194 (256)
++++++..|-|..+.++.|..+... .+...+.-..+. +...+.+.| |..+.... .+ .-.-+..+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~~~~~VQ~pv~---~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYL-LPRHDFVQLPVF---SLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhh-cCCCCEEeccee---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 4699999999999999988764332 232221110010 000111111 11100000 00 001234478
Q ss_pred CCeeeecHHHHHHHHHhcC---ccCCCccChHHHHHHHhhCCCeEe
Q 025192 195 GEMYVISRALAKFISINRS---ILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 195 G~gyvlS~~~v~~l~~~~~---~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
|.|+++++++++.+..... .-...--||.-+|.-+...|.+.+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~ 279 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQI 279 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEE
Confidence 9999999999999864321 222345899999988877765543
No 50
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=84.13 E-value=3.7 Score=37.54 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHH---HHHHHHhhcCCCCceEEEEeecCcceecCCCCccc----CCcccCCCCCC
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNID---SLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYE----PDWWKFGDKKL 188 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~---~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~----~~~~~~y~~~~ 188 (256)
.++.|+.+..++++++.+|||..+.++ -+.+.|..+...+++++=+-.+. .++... +.. + .
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd------nG~~~~~~~~~~~--l----y 154 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND------NGKEHFVDDTPSL--L----Y 154 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc------CCcccccCCCcce--E----E
Confidence 366666665679999999999999987 44555555544555543221111 111110 111 1 2
Q ss_pred ccccccCCeeeecHHHHHHHHHhcCccCCCccCh
Q 025192 189 YFRHASGEMYVISRALAKFISINRSILRTYAHDD 222 (256)
Q Consensus 189 yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~ED 222 (256)
+-.|+.|.|+++.+++-+.+ ....+...+||
T Consensus 155 rs~ff~glGWml~r~~W~e~---~~~wp~~~WD~ 185 (334)
T cd02514 155 RTDFFPGLGWMLTRKLWKEL---EPKWPKAFWDD 185 (334)
T ss_pred EecCCCchHHHHHHHHHHHh---CCCCCCCChHH
Confidence 33678999999999999888 23555544555
No 51
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=80.74 E-value=31 Score=28.54 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=79.4
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
...++++...+++ ...+.+ .+...+..+.++ . .+. ..|.- ++....+..+.+|++.+|+|+.+..+.|.
T Consensus 28 ~~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~-~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~ 96 (235)
T cd06434 28 PLEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVI-T-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALP 96 (235)
T ss_pred CCEEEEEeCCCCh---HHHHHH-HhhccCCcEEEE-e-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHH
Confidence 3456666544433 223333 344566666655 2 221 22332 23334444579999999999999999999
Q ss_pred HHHhhcCCCCce--EEEEeecCcceecCCCCcc------cCC-cccCCC---CCCccccccCCeeeecHHHHHHHHHhcC
Q 025192 146 ATLATHLDKPRV--YIGCMKSGDVFSEPGHKWY------EPD-WWKFGD---KKLYFRHASGEMYVISRALAKFISINRS 213 (256)
Q Consensus 146 ~~L~~~~~~~~~--y~G~~~~~~p~r~~~~k~~------~~~-~~~~y~---~~~yP~y~~G~gyvlS~~~v~~l~~~~~ 213 (256)
+.+.... .+.+ ..|..... ....+.|. ... .+..++ ...--..++|++.++.+++++.+.-...
T Consensus 97 ~l~~~~~-~~~v~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~ 172 (235)
T cd06434 97 EMLKPFE-DPKVGGVGTNQRIL---RPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEE 172 (235)
T ss_pred HHHHhcc-CCCEeEEcCceEee---cCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHH
Confidence 9888775 2222 22221110 00001110 000 000000 0011133578888888888876542211
Q ss_pred -------ccCCCccChHHHHHHHhhCCCe
Q 025192 214 -------ILRTYAHDDVSAGSWFLGLDVK 235 (256)
Q Consensus 214 -------~~~~~~~EDv~iG~~l~~l~v~ 235 (256)
..+...-||..++.-+.+.|.+
T Consensus 173 ~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 173 FTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1234467999998877666644
No 52
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.54 E-value=16 Score=28.92 Aligned_cols=133 Identities=7% Similarity=-0.044 Sum_probs=69.3
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
...++.+...+.+ ...+.++...+++..+.++ ....+.. .-.++....+....+|++..|+|..+.++.|.
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~-~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVI-RLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIP 98 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEE-EccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 3556555544433 3344444444555554434 2333322 12444444555556999999999999999888
Q ss_pred HHHhh-cCCCCceEEEEeec--Cc---c-eecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHH
Q 025192 146 ATLAT-HLDKPRVYIGCMKS--GD---V-FSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFIS 209 (256)
Q Consensus 146 ~~L~~-~~~~~~~y~G~~~~--~~---p-~r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~ 209 (256)
+++.. ..+...+..|.... +. + .+. ...+......... ...-.....|+.+++++++++.+.
T Consensus 99 ~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 99 KLLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHHH
Confidence 88876 33444566665321 10 0 000 0000000000000 011123456778899999999985
No 53
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=80.03 E-value=38 Score=34.36 Aligned_cols=193 Identities=8% Similarity=-0.031 Sum_probs=98.0
Q ss_pred CCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCC
Q 025192 25 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 104 (256)
Q Consensus 25 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 104 (256)
++...+-|+|+-.-+...-.+.|...=.+.. -.+..++++.. +++ +...+.+++-.++|.++..+ -..
T Consensus 60 ~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ld--------YP~~eI~vi~~-~nD--~~T~~~~~~l~~~~p~~~~v-~~~ 127 (727)
T PRK11234 60 PDEKPLAIMVPAWNETGVIGNMAELAATTLD--------YENYHIFVGTY-PND--PATQADVDAVCARFPNVHKV-VCA 127 (727)
T ss_pred CCCCCEEEEEecCcchhhHHHHHHHHHHhCC--------CCCeEEEEEec-CCC--hhHHHHHHHHHHHCCCcEEE-EeC
Confidence 3445667777755444433444444211111 12356666544 222 23344555555677775322 112
Q ss_pred CCCCCchHHHHHHHHHHHhcC---------CeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCc
Q 025192 105 EAPKEFPNKAKLFFAYAVDKW---------DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW 175 (256)
Q Consensus 105 D~y~nl~~K~~~~l~w~~~~~---------~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~ 175 (256)
. ...+.|.- +|+|+.... +++.++-.|-|+.|.++.|. .+....+...+.-+-.. +..|+ .+.|
T Consensus 128 ~--~g~~gKa~-aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~ 200 (727)
T PRK11234 128 R--PGPTSKAD-CLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHF 200 (727)
T ss_pred C--CCCCCHHH-HHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHH
Confidence 2 11245653 355555442 34567779999999999997 44333222222111111 10111 1111
Q ss_pred ----ccCCcc-cCCC----CC--CccccccCCeeeecHHHHHHHHHhc---CccCCCccChHHHHHHHhhCCCeE
Q 025192 176 ----YEPDWW-KFGD----KK--LYFRHASGEMYVISRALAKFISINR---SILRTYAHDDVSAGSWFLGLDVKY 236 (256)
Q Consensus 176 ----~~~~~~-~~y~----~~--~yP~y~~G~gyvlS~~~v~~l~~~~---~~~~~~~~EDv~iG~~l~~l~v~~ 236 (256)
|..+.. ...+ .. .-+-.++|.++.++|.+++.+.+.. ......--||.-+|.-+...|.+.
T Consensus 201 ~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v 275 (727)
T PRK11234 201 TSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMRE 275 (727)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEE
Confidence 111110 0000 00 1345688999999999887777654 233445689999999998777554
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=78.01 E-value=5.5 Score=34.07 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=61.1
Q ss_pred CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc--eEEEEeecCcceecCCCCcccC----Cc----c---cCCCCCCccc
Q 025192 125 WDAEYYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSGDVFSEPGHKWYEP----DW----W---KFGDKKLYFR 191 (256)
Q Consensus 125 ~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~--~y~G~~~~~~p~r~~~~k~~~~----~~----~---~~y~~~~yP~ 191 (256)
.+.+|++.+|.|+.+..+.|..++......+. ...|.+... ++...|... ++ + ..-..-.+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~----~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPM----GKKQGPLVMYQVFEYAISHWLDKAFESVFGFVT 147 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEc----CCcchhHHHhHheehhhhhhhcccHHHcCCceE
Confidence 47899999999999999998888876532232 233433211 110011000 00 0 0001123466
Q ss_pred cccCCeeeecHHHHHHHHHhcCc----------c-------CCCccChHHHHHHHhhCCC
Q 025192 192 HASGEMYVISRALAKFISINRSI----------L-------RTYAHDDVSAGSWFLGLDV 234 (256)
Q Consensus 192 y~~G~gyvlS~~~v~~l~~~~~~----------~-------~~~~~EDv~iG~~l~~l~v 234 (256)
.+.|++.++.+++++.+...... . ....-||..++..+...|.
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~ 207 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGP 207 (244)
T ss_pred ECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCC
Confidence 78899999999998776322110 0 1124799999988865553
No 55
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=77.02 E-value=48 Score=28.64 Aligned_cols=125 Identities=9% Similarity=-0.068 Sum_probs=63.2
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCC--CceEEEE-eec-CcceecC---CCCcccCCcccCC-C-CC
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK--PRVYIGC-MKS-GDVFSEP---GHKWYEPDWWKFG-D-KK 187 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~--~~~y~G~-~~~-~~p~r~~---~~k~~~~~~~~~y-~-~~ 187 (256)
+++++.+. +++|++..|||+.+..+.|..++...... .-..+|. +.. ......+ ...+..+.. ... + ..
T Consensus 65 Gi~~a~~~-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFRR-GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQI-SLDGLTTP 142 (281)
T ss_pred HHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeee-cccccCCc
Confidence 56666543 68999999999999988877777654322 1223332 111 1000000 000000000 000 0 00
Q ss_pred CccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCC--CeEecCCCeec
Q 025192 188 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCC 244 (256)
Q Consensus 188 ~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~ 244 (256)
.-..++.++|.++++++++.+---.+.+ .+..||+-+..=+...| +-...+..+.|
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 1123555667789999999885321221 23468987765555444 34444444444
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=76.34 E-value=38 Score=27.87 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=30.6
Q ss_pred HHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEE
Q 025192 118 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 161 (256)
Q Consensus 118 l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~ 161 (256)
.....+..+.+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34445556789999999999999988877665543333344554
No 57
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=75.24 E-value=49 Score=27.91 Aligned_cols=158 Identities=7% Similarity=-0.011 Sum_probs=80.1
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCc--eeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 143 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~D--Il~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~ 143 (256)
.+.++++-..+++ ...+.+++-.++|++ +..+ ... .|.. | -.++....+..+.+|++.+|+|..+.++.
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~-~~~---~n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~ 110 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLR-PRP---GKLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKY 110 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEE-ecC---CCCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHH
Confidence 5677777665544 223334433345543 3322 111 2221 1 23445555556789999999999999988
Q ss_pred HHHHHhhcCC-CCceEEEEee-c-Ccc-----eecCCCCc--ccCCcccCCCCCCccccccCCeeeecHHHHHHHHHhcC
Q 025192 144 LGATLATHLD-KPRVYIGCMK-S-GDV-----FSEPGHKW--YEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRS 213 (256)
Q Consensus 144 L~~~L~~~~~-~~~~y~G~~~-~-~~p-----~r~~~~k~--~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~ 213 (256)
|.+++..... ...+..|... . +.. .|.-.++. ..... .+. .. -..++|++.++++++++.+.....
T Consensus 111 l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~-~~-~~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 111 LPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT--LLW-PG-VSDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH--HhC-CC-CCcCCCcccceeHHHHHHHHhhcc
Confidence 8888766432 3356666531 1 100 01000000 00000 111 11 123678888999999999975322
Q ss_pred ccCCCccChHHHHHHHhhCCCeEec
Q 025192 214 ILRTYAHDDVSAGSWFLGLDVKYLN 238 (256)
Q Consensus 214 ~~~~~~~EDv~iG~~l~~l~v~~~~ 238 (256)
. ..+ ..|.-+...+...|.+...
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~i~~ 209 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYRIEE 209 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCcEEE
Confidence 1 122 2355565555555544433
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=74.09 E-value=31 Score=28.21 Aligned_cols=169 Identities=9% Similarity=-0.074 Sum_probs=87.2
Q ss_pred CcEEEEEEeeecCCCCCcchhhhhhHHhhCCce-eeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHH
Q 025192 65 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDF-FILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 143 (256)
Q Consensus 65 ~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI-l~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~ 143 (256)
..+.++.+-+.+++ ...+.+++..++++.. ..+ .... |.- + -.++....+....+|++.+|+|....++.
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i-~~~~---n~G-~-~~a~~~g~~~a~gd~i~~ld~D~~~~~~~ 99 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVL-TLPK---NRG-K-GGAVRAGMLAARGDYILFADADLATPFEE 99 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEE-Eccc---CCC-c-HHHHHHHHHHhcCCEEEEEeCCCCCCHHH
Confidence 34677777666554 3344455555566654 222 2222 211 1 13344444555679999999999999999
Q ss_pred HHHHHhh-cCCCCceEEEEeecCcceecCCCCcc---cCCc-----ccCCCCCCccccccCCeeeecHHHHHHHHHhcCc
Q 025192 144 LGATLAT-HLDKPRVYIGCMKSGDVFSEPGHKWY---EPDW-----WKFGDKKLYFRHASGEMYVISRALAKFISINRSI 214 (256)
Q Consensus 144 L~~~L~~-~~~~~~~y~G~~~~~~p~r~~~~k~~---~~~~-----~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~ 214 (256)
|.+++.. ......+.+|......-.......|+ .+.. +.+.. ..+. -+..+..++++++++.+.... .
T Consensus 100 l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-d~~~g~~~~~r~~~~~~~~~~-~ 176 (211)
T cd04188 100 LEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLG-LGIK-DTQCGFKLFTRDAARRLFPRL-H 176 (211)
T ss_pred HHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcC-CCCc-ccccCceeEcHHHHHHHHhhh-h
Confidence 9988876 33344566776321100000000111 0000 00100 1111 123356899999999887432 2
Q ss_pred cCCCccChHHHHHHHhhCCCeEecCCCeecCC
Q 025192 215 LRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSS 246 (256)
Q Consensus 215 ~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~ 246 (256)
...+ .+|.-+-.-+...|.+...-+--+..+
T Consensus 177 ~~~~-~~d~el~~r~~~~g~~~~~vpi~~~~~ 207 (211)
T cd04188 177 LERW-AFDVELLVLARRLGYPIEEVPVRWVEI 207 (211)
T ss_pred ccce-EeeHHHHHHHHHcCCeEEEcCcceecC
Confidence 2223 357777666666766665555444443
No 59
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=73.25 E-value=48 Score=33.43 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=104.1
Q ss_pred CCCCCceEEEEEEcCCCChhh-HHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcch---hhhhhHHhhC---C
Q 025192 23 DPKKRPLVVIGILTRFGRKNN-RDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLD---QDIDSENKQT---N 95 (256)
Q Consensus 23 ~~~~~~~lli~V~S~~~~~~r-R~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~---~~l~~E~~~~---~ 95 (256)
......++.|+|++.-+..++ +..|+.++.+-... ....++.+ |++..+.+. +... ..+.+-.+++ .
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~----~~~~~~e~-~vLdD~~d~-~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT----GHGAHFDF-FILSDTRDP-DIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc----CCCCCEEE-EEEECCCCh-hHHHHHHHHHHHHHHhcCCCC
Confidence 445566788888877765543 46788887754310 01224555 888766552 1111 0111112333 2
Q ss_pred ceeeeCCCCCCCCCchHHHHHHHHHHHhc-CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCC
Q 025192 96 DFFILDHHVEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHK 174 (256)
Q Consensus 96 DIl~~~d~~D~y~nl~~K~~~~l~w~~~~-~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k 174 (256)
.|... ..-.|.-.|.-..-.|.... .+++|++-.|-|+.+..+.|.+.+.....+++ +|-+...+...+..+
T Consensus 193 ~i~yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s- 265 (691)
T PRK05454 193 RIFYR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT- 265 (691)
T ss_pred cEEEE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-
Confidence 44432 12234445666655555443 57899999999999999999998876532332 354432111111111
Q ss_pred ccc-----------C------CcccCCCCCCccccccCCeeeecHHHHHHHHH-----hcCc-cCCCccChHHHHHHHhh
Q 025192 175 WYE-----------P------DWWKFGDKKLYFRHASGEMYVISRALAKFISI-----NRSI-LRTYAHDDVSAGSWFLG 231 (256)
Q Consensus 175 ~~~-----------~------~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~-----~~~~-~~~~~~EDv~iG~~l~~ 231 (256)
++- + .+|+. .- -.+.|...|+.+++....-- ...- -...--||...|..+..
T Consensus 266 lfaR~qqf~~~~y~~~~~~G~~~w~~----~~-g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~ 340 (691)
T PRK05454 266 LFARLQQFATRVYGPLFAAGLAWWQG----GE-GNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRR 340 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc----Cc-cccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHH
Confidence 110 0 00110 00 11246667888887765531 1111 12345889999999987
Q ss_pred CCCeEe
Q 025192 232 LDVKYL 237 (256)
Q Consensus 232 l~v~~~ 237 (256)
.|-+..
T Consensus 341 ~GyrV~ 346 (691)
T PRK05454 341 AGWGVW 346 (691)
T ss_pred CCCEEE
Confidence 775544
No 60
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=72.65 E-value=89 Score=32.38 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=66.2
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce-EEEEee---cCcc-eecCCCCc-ccC-CcccCC----C
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMK---SGDV-FSEPGHKW-YEP-DWWKFG----D 185 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-y~G~~~---~~~p-~r~~~~k~-~~~-~~~~~y----~ 185 (256)
.++.+.++.+.+|++..|.|..+..+-|...+.....++++ .++... +..| .|+- +.. ..+ +.-.+| +
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~~fy~~iq~ 408 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGTLFYGLVQD 408 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchhHHHHHHHh
Confidence 56777777889999999999999988888766542222221 112110 1111 1110 000 000 000001 0
Q ss_pred --CCCccccccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCeEe
Q 025192 186 --KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 237 (256)
Q Consensus 186 --~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 237 (256)
...-..+|.|++.++.+++++.+---... .-.||..++.-+...|.+..
T Consensus 409 g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 409 GNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred HHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCCEEE
Confidence 00112567899999999999998532221 23699999999988875443
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=72.41 E-value=63 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhc
Q 025192 117 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH 151 (256)
Q Consensus 117 ~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~ 151 (256)
++....+....+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34555556789999999999999999888777654
No 62
>PLN03181 glycosyltransferase; Provisional
Probab=70.45 E-value=27 Score=32.94 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCC-----CCcc-hhhhh---hHHhhCC-ceeeeCCCCC-CCCCchHH
Q 025192 45 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANR-----GDSL-DQDID---SENKQTN-DFFILDHHVE-APKEFPNK 113 (256)
Q Consensus 45 ~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~-----~~~~-~~~l~---~E~~~~~-DIl~~~d~~D-~y~nl~~K 113 (256)
+.-|+.|.+.... ...+.+-+++-|.|..... ++.. ...++ +=+++|| ++.+.....+ .+..-+.|
T Consensus 109 D~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 5567788876431 1223344566666655221 1222 11121 1256777 4443211222 56677889
Q ss_pred HHHHHHHHHhcCCeeEEEEecCeeEEe
Q 025192 114 AKLFFAYAVDKWDAEYYAKVNDDVYVN 140 (256)
Q Consensus 114 ~~~~l~w~~~~~~~~~vlk~DDD~~vn 140 (256)
...+-.-+.++|+++||.-+|.|+++-
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCceee
Confidence 988888888899999999999999873
No 63
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.19 E-value=58 Score=26.51 Aligned_cols=107 Identities=9% Similarity=-0.047 Sum_probs=59.4
Q ss_pred HHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEe--ec--Cc-ceecCCCCcccCCcccCCCCCCcccc
Q 025192 118 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM--KS--GD-VFSEPGHKWYEPDWWKFGDKKLYFRH 192 (256)
Q Consensus 118 l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~--~~--~~-p~r~~~~k~~~~~~~~~y~~~~yP~y 192 (256)
+..+.+....+|++.+|+|..+..+.|.+++....... ..+|.. .. .. ..+....++.... .....+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~- 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS------RLFGLP- 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee------cccCCC-
Confidence 33444556689999999999999888888766554332 333432 11 11 1010001111110 001112
Q ss_pred ccCCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhCCCe
Q 025192 193 ASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK 235 (256)
Q Consensus 193 ~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~ 235 (256)
.++.+.++++++.+.+---... +..||.-++.-+...|..
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCE
Confidence 2356889999988877533222 278999888777666543
No 64
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=60.55 E-value=39 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=28.8
Q ss_pred CceeeeCCCCCCCCCchHHHHHHHHHHHhc-CCeeEEEEecCeeEEeHHH
Q 025192 95 NDFFILDHHVEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDS 143 (256)
Q Consensus 95 ~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~-~~~~~vlk~DDD~~vn~~~ 143 (256)
.++-++ .+...+..-... ...++.+.+. ..++|++.+|-|=|+.++.
T Consensus 41 ~~v~i~-~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 41 PGVGII-RWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCcEEE-EeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 344433 345556543333 3344444444 6899999999999998654
No 65
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=59.49 E-value=89 Score=24.87 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHHh-cCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceecCCCCcccC---Cccc----CCC--
Q 025192 116 LFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP---DWWK----FGD-- 185 (256)
Q Consensus 116 ~~l~w~~~-~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~~~---~~~~----~y~-- 185 (256)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+... +++...|.-. .++. +..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34555432 24689999999999999988888877765444555565421 1122222100 0000 000
Q ss_pred --CCCccccccCCeeeecHHHHHH
Q 025192 186 --KKLYFRHASGEMYVISRALAKF 207 (256)
Q Consensus 186 --~~~yP~y~~G~gyvlS~~~v~~ 207 (256)
.-.-+.++.|.++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 0122446789999999999988
No 66
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.96 E-value=38 Score=30.15 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=56.2
Q ss_pred CCcEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCC--CCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeH
Q 025192 64 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV--EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNI 141 (256)
Q Consensus 64 ~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~--D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~ 141 (256)
...+.++|+-|.. .....|..=.....-++.+ ++. +.+..-+.--..+..|..+.|+..+++..|-|+|.-.
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl-~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYL-DFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEE-ecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 3456666665543 3345565555666665656 443 3444445566778889888899999999999999999
Q ss_pred HHHHHHHh
Q 025192 142 DSLGATLA 149 (256)
Q Consensus 142 ~~L~~~L~ 149 (256)
++..+.|+
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 67
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=57.38 E-value=73 Score=23.26 Aligned_cols=83 Identities=18% Similarity=0.066 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcCCCCce-EEEEeecCcceecCCCCcccCCcccCCCCCCcccccc
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHAS 194 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-y~G~~~~~~p~r~~~~k~~~~~~~~~y~~~~yP~y~~ 194 (256)
.++..+.+..+.+|++.+|+|..+.++.+...+......+.. .++. +
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~-----------------------------~--- 114 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG-----------------------------P--- 114 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec-----------------------------c---
Confidence 334444444579999999999999988887764332211111 1100 0
Q ss_pred CCeeeecHHHHHHHHHhcCccCCCccChHHHHHHHhhC
Q 025192 195 GEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL 232 (256)
Q Consensus 195 G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l 232 (256)
+++++++++.+.+........ ...||..++..+...
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~-~~~ed~~~~~~~~~~ 150 (156)
T cd00761 115 -GNLLFRRELLEEIGGFDEALL-SGEEDDDFLLRLLRG 150 (156)
T ss_pred -chheeeHHHHHHhCCcchHhc-CCcchHHHHHHHHhh
Confidence 678888888887764322221 126777776555443
No 68
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=55.79 E-value=1e+02 Score=29.37 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=52.6
Q ss_pred hhhhhHHhhCCceee---eCCCCCCCCC-----c--hHHHHHHHHHHHhc----CCeeEEEEecCeeEEeHHHHHHHHhh
Q 025192 85 QDIDSENKQTNDFFI---LDHHVEAPKE-----F--PNKAKLFFAYAVDK----WDAEYYAKVNDDVYVNIDSLGATLAT 150 (256)
Q Consensus 85 ~~l~~E~~~~~DIl~---~~d~~D~y~n-----l--~~K~~~~l~w~~~~----~~~~~vlk~DDD~~vn~~~L~~~L~~ 150 (256)
+...++++.|+|-+. .+++.+.-.. + -.|.-.=++|+.++ .+++.++-+.||.-+-++=+ +++..
T Consensus 136 ~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf-~Yf~~ 214 (434)
T PF03071_consen 136 EEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFF-EYFSA 214 (434)
T ss_dssp HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHH-HHHHH
T ss_pred HHHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHH-HHHHH
Confidence 455677778865432 1233221111 0 12344456666655 36888999999999976533 33222
Q ss_pred c----CCCCceEEEEeecCcceecCCCCcccCC--cccCCCCCCccccccCCeeeecHHHHHHHHH
Q 025192 151 H----LDKPRVYIGCMKSGDVFSEPGHKWYEPD--WWKFGDKKLYFRHASGEMYVISRALAKFISI 210 (256)
Q Consensus 151 ~----~~~~~~y~G~~~~~~p~r~~~~k~~~~~--~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~ 210 (256)
. ...+.+++=.-.+..- ....+.. .-.+| .-.|..|-|++|++++-..|..
T Consensus 215 ~~~ll~~D~sl~ciSawNdnG-----~~~~~~~~~~~~ly----RsdffpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 215 TLPLLENDPSLWCISAWNDNG-----KEHFVDDSRPSLLY----RSDFFPGLGWMLTRELWDELEP 271 (434)
T ss_dssp HHHHHHH-TTEEEEES--TT------BGGGS-TT-TT-EE----EESS---SSEEEEHHHHHHHGG
T ss_pred HHHHHhcCCCeEEEEccccCC-----ccccccCCCccceE----ecccCCchHHHhhHHHHHhhcc
Confidence 1 2244566543222110 0111111 00122 2345679999999999987653
No 69
>PHA01631 hypothetical protein
Probab=53.04 E-value=51 Score=27.04 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=54.1
Q ss_pred hhCCceeeeCCCCCCCCCchHHHHHHHHHHHhc---CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcce
Q 025192 92 KQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDK---WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVF 168 (256)
Q Consensus 92 ~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~---~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~ 168 (256)
+-+.+|+... ....+++ +....+|..+.++ -+-+.++.+|.|++|+.-. .. .++..++.=|.. .
T Consensus 37 ~~~~~Ii~~~-t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP----A 103 (176)
T PHA01631 37 KYQEKIIWIM-TNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW----L 103 (176)
T ss_pred ccCCceEEec-ccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee----e
Confidence 3366777662 2222233 3333444555443 4678888999999997432 11 122233333331 1
Q ss_pred ecCCCCcccCCcccCCCCCCccccccCCeeeecHHHHHHHHHh
Q 025192 169 SEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 211 (256)
Q Consensus 169 r~~~~k~~~~~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 211 (256)
+ .| |.+..-+||.|--+++.+..+..|...
T Consensus 104 ~---~k----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 104 Y---YD----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred e---ec----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 1 11 124556899999999999999888753
No 70
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.56 E-value=2.1e+02 Score=25.86 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=64.5
Q ss_pred CCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCCCCcchhhhhhHHhhC----Cceee
Q 025192 24 PKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQT----NDFFI 99 (256)
Q Consensus 24 ~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~~~~~~~~l~~E~~~~----~DIl~ 99 (256)
..+.+.+-|+|+.--+...-.+.++++........+. .......+++|-..+.+ ...+.+++-.+.+ .++-+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~-~~~~~~EIIVVDDgStD---~T~~i~~~~~~~~~~~~~~i~v 141 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRK-DPKFKYEIIIVNDGSKD---KTLKVAKDFWRQNINPNIDIRL 141 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhcc-CCCCCEEEEEEeCCCCC---chHHHHHHHHHhcCCCCCcEEE
Confidence 3455667777765544333445666665532110000 01224677777655543 2222222222332 12443
Q ss_pred eCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcC----CCCceEEEEe
Q 025192 100 LDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL----DKPRVYIGCM 162 (256)
Q Consensus 100 ~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~----~~~~~y~G~~ 162 (256)
+ ... .|. .|. .+++...++...+|++.+|.|....++.+..+++... +...+.+|..
T Consensus 142 i-~~~---~N~-G~~-~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR 202 (333)
T PTZ00260 142 L-SLL---RNK-GKG-GAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR 202 (333)
T ss_pred E-EcC---CCC-ChH-HHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec
Confidence 3 222 221 122 2333344455689999999999999877666655432 2234667764
No 71
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=46.78 E-value=1.1e+02 Score=28.81 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHHhhcCchhhhcccCCCcEEEEEEeeecCCC-----CCcc-hhhhh---hHHhhCCceeeeCCC---CCCCCCchH
Q 025192 45 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANR-----GDSL-DQDID---SENKQTNDFFILDHH---VEAPKEFPN 112 (256)
Q Consensus 45 ~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~~-----~~~~-~~~l~---~E~~~~~DIl~~~d~---~D~y~nl~~ 112 (256)
+.-|+.|.+......... ...-+++-|.|..... ++.. ...++ +=+++||=-++. +. .+.....+.
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fy-n~~~ld~~~p~~Wa 183 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFY-NMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEe-ehhhcCcCCCcchh
Confidence 456777887643211110 1334677777766542 1111 22221 125677744444 33 234567788
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCeeEE
Q 025192 113 KAKLFFAYAVDKWDAEYYAKVNDDVYV 139 (256)
Q Consensus 113 K~~~~l~w~~~~~~~~~vlk~DDD~~v 139 (256)
|.-++.+-+.++|+++||.=+|.|+++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 999999999999999999999999988
No 72
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=42.85 E-value=27 Score=30.40 Aligned_cols=98 Identities=12% Similarity=0.215 Sum_probs=54.0
Q ss_pred CeeEEEEecCeeEEeHHHHHHHHhhcCCCCceEEEEeecCcceec-CCCCccc-CCcccCCCCCCccccccCCeeeecHH
Q 025192 126 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSE-PGHKWYE-PDWWKFGDKKLYFRHASGEMYVISRA 203 (256)
Q Consensus 126 ~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~-~~~k~~~-~~~~~~y~~~~yP~y~~G~gyvlS~~ 203 (256)
..+-|+-+|||+.+..+.|...+......+.-++|....... .+ ..++|-- +++ . ..| -....++-++.+.
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~-~~~~~~~~~Y~~~~-~----~~y-SmvLt~aaf~h~~ 147 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHS-WDPSSGRWKYTSEW-S----NEY-SMVLTGAAFYHRY 147 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEE-EE-ETTEEEEE-SS-S------B-SEE-TTEEEEETH
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceee-cCCCccccccccCC-C----Ccc-hhhhhhhHhhcch
Confidence 578999999999999999998888777666677887532211 12 2455532 222 1 122 1233455566666
Q ss_pred HHHHHHHhcC-----c-cCCCccChHHHHHHHh
Q 025192 204 LAKFISINRS-----I-LRTYAHDDVSAGSWFL 230 (256)
Q Consensus 204 ~v~~l~~~~~-----~-~~~~~~EDv~iG~~l~ 230 (256)
.......... . -..+.=||+.+-.++.
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6543332110 0 1235789998877765
No 73
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=42.69 E-value=16 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHhhcCchhhhcccCCCcEEEEEEeeecCC
Q 025192 49 KAWMGTGAALKKRENEKGIITRFVIGRSAN 78 (256)
Q Consensus 49 ~TW~~~~~~l~~~~~~~~i~~~FvvG~~~~ 78 (256)
++|+++.. ...++..|.-+|++|..+.
T Consensus 9 qSWM~DLr---S~I~~~~I~ql~ipGsHns 35 (51)
T PF03490_consen 9 QSWMSDLR---SSIGEMAITQLFIPGSHNS 35 (51)
T ss_pred HHHHHHHH---HHHhcceeeeEEecccccc
Confidence 68998853 3446778999999998865
No 74
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.96 E-value=1.6e+02 Score=26.12 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=54.0
Q ss_pred CCcEEEEEEeeecCCCCCcchhhhhhH----------HhhCCceeee-CCCCCCC-------C-----CchHHHHHHH-H
Q 025192 64 EKGIITRFVIGRSANRGDSLDQDIDSE----------NKQTNDFFIL-DHHVEAP-------K-----EFPNKAKLFF-A 119 (256)
Q Consensus 64 ~~~i~~~FvvG~~~~~~~~~~~~l~~E----------~~~~~DIl~~-~d~~D~y-------~-----nl~~K~~~~l-~ 119 (256)
...|.+-|+++.++.. +...+.|+++ ...|+.|.++ .||.+.- . ..-++.++-. .
T Consensus 54 ~~lIsLgfLv~d~~e~-d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSEF-DNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCchh-HHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 3468999999998732 2333444433 3457777765 2554321 0 1111222211 2
Q ss_pred HHHhc---CCeeEEEEecCeeEEeHHHHHHHHhhcC
Q 025192 120 YAVDK---WDAEYYAKVNDDVYVNIDSLGATLATHL 152 (256)
Q Consensus 120 w~~~~---~~~~~vlk~DDD~~vn~~~L~~~L~~~~ 152 (256)
|+..+ +..+||+-.|-|+.-.++.|++-|...+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 33333 5789999999999999999999997765
No 75
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=38.03 E-value=1.2e+02 Score=27.53 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=47.0
Q ss_pred hHHHHHHHH--HHHhc--CCeeEEEEecCeeEEeH-HHHHHHHhhcCCCCceEEEEee---cCcceecCCCCcccCCccc
Q 025192 111 PNKAKLFFA--YAVDK--WDAEYYAKVNDDVYVNI-DSLGATLATHLDKPRVYIGCMK---SGDVFSEPGHKWYEPDWWK 182 (256)
Q Consensus 111 ~~K~~~~l~--w~~~~--~~~~~vlk~DDD~~vn~-~~L~~~L~~~~~~~~~y~G~~~---~~~p~r~~~~k~~~~~~~~ 182 (256)
..+.+..++ +..+. ...+|++-++||+.++- ..+...+.....+ ++.+=.+. .++..|. -++..
T Consensus 97 ia~HlsLWes~~~~~~k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~n-~idilQLre~~~~~~~~~-----~~~~~-- 168 (323)
T PHA02688 97 IARHLSLWESYANADIKDKEDEYIVVVEDDNTLRDITTLHPIIKAMKEK-NIDILQLRETLHNNNVRT-----LLNQE-- 168 (323)
T ss_pred HHHHHHHHHhhccCCccccCCCeEEEEcCCCcccccHHHHHHHHHHHhc-CeEEEEeehhhhCCcccc-----cccCC--
Confidence 345556666 32222 35789999999999883 3333333333222 23333321 1221121 11100
Q ss_pred CCCCCCccccccC-----CeeeecHHHHHHHHHh
Q 025192 183 FGDKKLYFRHASG-----EMYVISRALAKFISIN 211 (256)
Q Consensus 183 ~y~~~~yP~y~~G-----~gyvlS~~~v~~l~~~ 211 (256)
..+..-.|-+| ++||++...+.+|+..
T Consensus 169 --~~~~~~~Y~ggydvSLsAYIIr~~~a~kl~~~ 200 (323)
T PHA02688 169 --GNPALYSYTGGYDVSLSAYIIRVSTAKKLYDE 200 (323)
T ss_pred --CCcceEEecCCcceeeEEEEEeHHHHHHHHHH
Confidence 01122233344 8999999999999874
No 76
>PRK10073 putative glycosyl transferase; Provisional
Probab=37.28 E-value=3.1e+02 Score=24.61 Aligned_cols=76 Identities=11% Similarity=-0.014 Sum_probs=44.9
Q ss_pred cEEEEEEeeecCCCCCcchhhhhhHHhhCCceeeeCCCCCCCCCchHHHHHHHHHHHhcCCeeEEEEecCeeEEeHHHHH
Q 025192 66 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 145 (256)
Q Consensus 66 ~i~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~ 145 (256)
.+.++.|-..+++ ...+.+++-.+++..|.++ . .+ |.. .-.+.....+..+.+|++.+|+|-++.++.|.
T Consensus 35 ~~EIIiVdDgStD---~t~~i~~~~~~~~~~i~vi-~-~~---n~G--~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~ 104 (328)
T PRK10073 35 ALEIIIVNDGSTD---NSVEIAKHYAENYPHVRLL-H-QA---NAG--VSVARNTGLAVATGKYVAFPDADDVVYPTMYE 104 (328)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEE-E-CC---CCC--hHHHHHHHHHhCCCCEEEEECCCCccChhHHH
Confidence 5677776544433 2223333334445555544 2 11 211 23334555666788999999999999998887
Q ss_pred HHHhhc
Q 025192 146 ATLATH 151 (256)
Q Consensus 146 ~~L~~~ 151 (256)
.++...
T Consensus 105 ~l~~~~ 110 (328)
T PRK10073 105 TLMTMA 110 (328)
T ss_pred HHHHHH
Confidence 777653
No 77
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=35.46 E-value=43 Score=28.94 Aligned_cols=31 Identities=16% Similarity=-0.026 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHhcCCeeEEEEecCeeEEe
Q 025192 110 FPNKAKLFFAYAVDKWDAEYYAKVNDDVYVN 140 (256)
Q Consensus 110 l~~K~~~~l~w~~~~~~~~~vlk~DDD~~vn 140 (256)
.+.|..++-+.+.++|+++||+-+|.|+++.
T Consensus 60 ~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 60 SWAKIPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHTHHHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred hhHHHHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 4779999999999999999999999999885
No 78
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=32.83 E-value=25 Score=28.58 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=43.4
Q ss_pred eeEEEEecCeeEEeHHHHHHHHhhcCCCCce--EEEEeecCcceecCCCCcccC----CcccC------CCCCCcccccc
Q 025192 127 AEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGDVFSEPGHKWYEP----DWWKF------GDKKLYFRHAS 194 (256)
Q Consensus 127 ~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~--y~G~~~~~~p~r~~~~k~~~~----~~~~~------y~~~~yP~y~~ 194 (256)
.+|++.+|.|+.+.++.|........ .+.+ ..|.+. ..+...+|... +++.. .....-.-+++
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVR----MYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEE----EecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999888655443 2222 222221 12223334211 11000 00001122368
Q ss_pred CCeeeecHHHHHHH
Q 025192 195 GEMYVISRALAKFI 208 (256)
Q Consensus 195 G~gyvlS~~~v~~l 208 (256)
|.|.++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 99999999999988
No 79
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=31.53 E-value=64 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhc-CCeeEEEEecCeeEEeHHHHHHHHhh
Q 025192 112 NKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLAT 150 (256)
Q Consensus 112 ~K~~~~l~w~~~~-~~~~~vlk~DDD~~vn~~~L~~~L~~ 150 (256)
.+....+.|+.+. +..+|++|+|.|-.-....|....-.
T Consensus 160 n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 160 NSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred hhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 3566788888888 78899999999999999999886643
No 80
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=30.88 E-value=2.3e+02 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCCCCceEEEEEEcCCCChhhHHHHHHHhhcCchhhhcccCCCcEEEEEEeeecC
Q 025192 23 DPKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSA 77 (256)
Q Consensus 23 ~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~~~~~~~i~~~FvvG~~~ 77 (256)
..+.+..|.|+|+|-... +-..+..|=++-...+..- +...+.++-+++.++
T Consensus 47 ~~~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~-Er~~i~IvVllAd~D 98 (297)
T PF04666_consen 47 KPRTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPE-ERKDIVIVVLLADTD 98 (297)
T ss_pred CCCCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHH-HhcCeEEEEEecCCC
Confidence 445556699999987642 3356667766643221111 123455544455554
No 81
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=26.76 E-value=88 Score=26.14 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCeeEEEEecCeeEEeHHHHHHHHhhcC
Q 025192 116 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL 152 (256)
Q Consensus 116 ~~l~w~~~~~~~~~vlk~DDD~~vn~~~L~~~L~~~~ 152 (256)
.+..++.+.+..+|++.+|.|..+.++.+..++....
T Consensus 61 ~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 61 AQRNFALELATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 4567777778888999999999998887776665543
No 82
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=26.35 E-value=2.7e+02 Score=23.99 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=47.2
Q ss_pred HHHHHHHHhc---CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc---eEEEEeecCcceecCCCC---cccCCcccCCC
Q 025192 115 KLFFAYAVDK---WDAEYYAKVNDDVYVNIDSLGATLATHLDKPR---VYIGCMKSGDVFSEPGHK---WYEPDWWKFGD 185 (256)
Q Consensus 115 ~~~l~w~~~~---~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~---~y~G~~~~~~p~r~~~~k---~~~~~~~~~y~ 185 (256)
-.+|+|+.+| -..--|.++|||.--.++-+.+ ++..+.-.- -.+|.+.-..|+.+ ++| |+.... |
T Consensus 81 n~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e-mR~i~~vg~WPVglvg~~~vegP~c~-~gkV~gw~~~w~----~ 154 (223)
T cd00218 81 NLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE-MRKIKRVGVWPVGLVGGLRVEGPVCE-NGKVVGWHTAWK----P 154 (223)
T ss_pred HHHHHHHHhccccCcceEEEEccCCCcccHHHHHH-HhccCeeeEEEeeeecCceeeccEee-CCeEeEEecCCC----C
Confidence 4789999998 3456899999999888764444 666431110 02222222234433 333 665421 2
Q ss_pred CCCccccccCCeeeecHHHH
Q 025192 186 KKLYFRHASGEMYVISRALA 205 (256)
Q Consensus 186 ~~~yP~y~~G~gyvlS~~~v 205 (256)
...|| ..=+||+++..++
T Consensus 155 ~R~f~--idmAGFA~n~~ll 172 (223)
T cd00218 155 ERPFP--IDMAGFAFNSKLL 172 (223)
T ss_pred CCCCc--ceeeeEEEehhhh
Confidence 33444 3336799998776
No 83
>COG5454 Predicted secreted protein [Function unknown]
Probab=25.63 E-value=44 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=18.4
Q ss_pred EEEcCCCChh-hHHHHHHHhhcCc
Q 025192 33 GILTRFGRKN-NRDAIRKAWMGTG 55 (256)
Q Consensus 33 ~V~S~~~~~~-rR~aIR~TW~~~~ 55 (256)
.|.|+|-+.. .|..||.||++..
T Consensus 39 tv~sAP~~p~~~R~vl~TT~~sav 62 (89)
T COG5454 39 TVPSAPANPHLLRAVLRTTVASAV 62 (89)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHH
Confidence 3788987665 7999999999863
No 84
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=25.11 E-value=1.1e+02 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=25.6
Q ss_pred CCCceEEEEE--EcCCCChhhH---HHHHHHhhcCchhhhcccCCCcEE-EEEEeeec
Q 025192 25 KKRPLVVIGI--LTRFGRKNNR---DAIRKAWMGTGAALKKRENEKGII-TRFVIGRS 76 (256)
Q Consensus 25 ~~~~~lli~V--~S~~~~~~rR---~aIR~TW~~~~~~l~~~~~~~~i~-~~FvvG~~ 76 (256)
...+.++|.| +|.|...+.| .-|-+-|..+.. +..+. -+||+|..
T Consensus 64 gktlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlf-------n~~~dlq~fii~dd 114 (164)
T KOG4357|consen 64 GKTLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLF-------NAHVDLQRFIIDDD 114 (164)
T ss_pred CceEEEEEEecCCCCCChhhccchhHHHHHHHHHHhh-------ccccceEEEEecCC
Confidence 3445556655 3456566655 457788887652 22233 36887653
No 85
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=23.61 E-value=85 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCeeEEEEecCeeEEeHHHH
Q 025192 115 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 144 (256)
Q Consensus 115 ~~~l~w~~~~~~~~~vlk~DDD~~vn~~~L 144 (256)
-.+++.+.+..+++|++.+.||+++.-+++
T Consensus 43 ~~~yN~a~~~a~~~ylvflHqDv~i~~~~~ 72 (217)
T PF13712_consen 43 AAAYNEAMEKAKAKYLVFLHQDVFIINENW 72 (217)
T ss_dssp TTHHHHHGGG--SSEEEEEETTEE-SSHHH
T ss_pred HHHHHHHHHhCCCCEEEEEeCCeEEcchhH
Confidence 457788888889999999999999974443
No 86
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=22.60 E-value=1.5e+02 Score=30.73 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhc------CCeeEEEEecCeeEEeHHHHHHHHhhcCCCCc
Q 025192 113 KAKLFFAYAVDK------WDAEYYAKVNDDVYVNIDSLGATLATHLDKPR 156 (256)
Q Consensus 113 K~~~~l~w~~~~------~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~ 156 (256)
|.+...+|+..- +...||+-+|-|+-+.++.|..+++..+.++.
T Consensus 421 krw~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~ 470 (862)
T KOG2571|consen 421 KRWNQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQ 470 (862)
T ss_pred hhHHHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcc
Confidence 444555554433 56889999999999999999999998875543
No 87
>PLN02893 Cellulose synthase-like protein
Probab=21.54 E-value=2.9e+02 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.5
Q ss_pred CCeeEEEEecCeeEEe-HHHHHHHH
Q 025192 125 WDAEYYAKVNDDVYVN-IDSLGATL 148 (256)
Q Consensus 125 ~~~~~vlk~DDD~~vn-~~~L~~~L 148 (256)
.+.+|++-.|-|.|+| ++.|.+.+
T Consensus 297 TngpfIl~lDcD~y~n~p~~l~~am 321 (734)
T PLN02893 297 TNAPIILTLDCDMYSNDPQTPLRAL 321 (734)
T ss_pred CCCCEEEEecCCcCCCchhHHHHHH
Confidence 5799999999999986 56666655
No 88
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.53 E-value=1.1e+02 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=28.7
Q ss_pred cccCCeeeecHHHHHHHHHhcCccCC-CccChHHHHHHHhhCC
Q 025192 192 HASGEMYVISRALAKFISINRSILRT-YAHDDVSAGSWFLGLD 233 (256)
Q Consensus 192 y~~G~gyvlS~~~v~~l~~~~~~~~~-~~~EDv~iG~~l~~l~ 233 (256)
+.+-+||++|+.+++.+++.....+. .+.|+...-.++...+
T Consensus 154 ~~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~~~~~ 196 (255)
T COG3306 154 HLGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEFLHGVG 196 (255)
T ss_pred ccCccceeecHHHHHHHHHHhhhcccccChhHHHhhhhccccC
Confidence 35569999999999999987654333 4566665545553333
Done!