BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025193
         (256 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 34/233 (14%)

Query: 32  GGWQIAHATFYGGSDASGTM--GGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEI 89
           G W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+CYE+
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 90  RCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQ--HFDLAQPSFLHIAQ--- 144
           RC   P+ C    +TV  T+    NY            P+   HFDL+  +F  +A+   
Sbjct: 77  RCKEKPE-CSGNPVTVYITDM---NYE-----------PIAPYHFDLSGKAFGSLAKPGL 121

Query: 145 ----YRAGIVPVLFRRVPCVKKGGIRFTINGHSYFN----LVLITNVGGAGDVKAVFIKG 196
                  GI+ V FRRV C    G +   +     N     VL+  V   GD+  + I+ 
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181

Query: 197 SKTG-WQAMSRNWGQNWQSNS--YLDGQSLSFKVTTSDGRTITSYNVVPANWK 246
             +  W+ M  +WG  W+ ++   L G   S ++T+  G+ + + +V+PANW+
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWR 233


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 31/243 (12%)

Query: 27  INGDYGG-WQIAHATFYGGSDASGTM--GGACGYGNLYSQGYGTNTAALSTALFNNGLSC 83
           I   YG  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  C
Sbjct: 11  ITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGC 70

Query: 84  GACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIA 143
           G+C+EI+C   P+ C    + V           +++DN     P   HFDL+  +F  +A
Sbjct: 71  GSCFEIKCTK-PEACSGEPVVV----------HITDDNEEPIAP--YHFDLSGHAFGAMA 117

Query: 144 Q-------YRAGIVPVLFRRVPCVKKGGIRFTINGHSYFN----LVLITNVGGAGDVKAV 192
           +         AG + + FRRV C    G + T +     N     +L+  V G GDV AV
Sbjct: 118 KKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAV 177

Query: 193 FIKGS-KTGWQAMSRNWGQNWQSNS--YLDGQSLSFKVTTSDGRTITSYNVVPANWKFGQ 249
            IK   K  W  +  +WG  W+ ++   L G   + + TT  G    + +V+P  WK   
Sbjct: 178 DIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADT 236

Query: 250 TFE 252
           ++E
Sbjct: 237 SYE 239


>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
          Length = 751

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 161 KKGGIRFTINGHSYFNLVLITNVGGAGDVKAVFI-KGSKTGW 201
           ++ G+R+ +  H   +LV++TN GGA + K +   +G  + W
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358


>pdb|4GMO|A Chain A, Crystal Structure Of Syo1
          Length = 684

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 147 AGIVPVLFRRVPCVKKGGIRFTINGHS-YFNLVLITNVGGAG---DVKAVFIKGSKTGWQ 202
           A ++P L R +  V  GG +F  NG + Y N+ L+  V  A    D +   +KG++   +
Sbjct: 275 AILIPTLTRALEHVVPGGAKF--NGDARYANITLLALVTLASIGTDFQETLVKGNQGSRE 332

Query: 203 AMSRNWGQNWQSNSYLDGQSLSFKVTTSDGR 233
           +      + W      DG ++     +S G 
Sbjct: 333 SPISAADEEWNGFDDADGDAMDVDQKSSSGE 363


>pdb|4GMN|A Chain A, Structural Basis Of Rpl5 Recognition By Syo1
          Length = 676

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 147 AGIVPVLFRRVPCVKKGGIRFTINGHS-YFNLVLITNVGGAG---DVKAVFIKGSKTGWQ 202
           A ++P L R +  V  GG +F  NG + Y N+ L+  V  A    D +   +KG++   +
Sbjct: 275 AILIPTLTRALEHVVPGGAKF--NGDARYANITLLALVTLASIGTDFQETLVKGNQGSRE 332

Query: 203 AMSRNWGQNWQSNSYLDGQSLSFKVTTSDGR 233
           +      + W      DG ++     +S G 
Sbjct: 333 SPISAADEEWNGFDDADGDAMDVDQKSSSGE 363


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,273,357
Number of Sequences: 62578
Number of extensions: 358495
Number of successful extensions: 841
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 11
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)