Query 025193
Match_columns 256
No_of_seqs 146 out of 1023
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 2.1E-69 4.6E-74 480.5 29.3 246 11-256 5-256 (256)
2 PLN00050 expansin A; Provision 100.0 2.3E-69 4.9E-74 478.6 27.3 239 17-256 9-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 1.6E-62 3.4E-67 434.6 25.2 210 30-256 21-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 6.8E-27 1.5E-31 194.9 19.7 181 33-244 29-216 (232)
5 PLN03024 Putative EG45-like do 100.0 6.7E-28 1.5E-32 194.1 13.3 109 21-156 13-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 1.9E-26 4.2E-31 174.9 8.6 86 69-154 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.5E-23 3.2E-28 166.9 10.9 90 159-256 22-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 4.2E-22 9.1E-27 149.7 9.5 77 165-242 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 7.5E-19 1.6E-23 130.4 6.8 73 69-154 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1.3E-10 2.7E-15 91.3 4.9 60 79-159 56-119 (119)
11 PF07249 Cerato-platanin: Cera 97.9 6.3E-05 1.4E-09 60.3 8.9 66 68-158 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00011 2.4E-09 64.0 10.4 95 37-161 1-95 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00019 4.1E-09 63.5 9.9 60 83-160 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.1 0.0056 1.2E-07 57.6 11.4 60 82-159 114-173 (361)
15 PF02015 Glyco_hydro_45: Glyco 88.8 0.48 1E-05 41.3 3.5 54 69-137 70-123 (201)
16 PF07172 GRP: Glycine rich pro 76.9 1.8 3.9E-05 33.3 2.0 24 1-25 1-24 (95)
17 cd02854 Glycogen_branching_enz 76.6 5.8 0.00013 30.5 4.8 48 189-236 16-76 (99)
18 PF03404 Mo-co_dimer: Mo-co ox 70.5 11 0.00023 30.6 5.2 50 185-234 38-106 (131)
19 cd02110 SO_family_Moco_dimer S 66.3 13 0.00029 34.5 5.6 49 186-234 235-293 (317)
20 PRK10564 maltose regulon perip 48.2 61 0.0013 30.1 6.6 76 152-256 48-127 (303)
21 TIGR02588 conserved hypothetic 45.7 1.6E+02 0.0035 23.8 7.9 66 163-229 34-118 (122)
22 PF10417 1-cysPrx_C: C-termina 44.7 12 0.00027 24.0 1.1 11 239-249 10-20 (40)
23 cd02859 AMPKbeta_GBD_like AMP- 40.3 92 0.002 22.5 5.4 56 178-238 4-62 (79)
24 PLN00177 sulfite oxidase; Prov 40.1 75 0.0016 30.6 6.1 26 181-206 290-316 (393)
25 cd02855 Glycogen_branching_enz 40.0 1E+02 0.0023 22.7 5.9 34 202-235 49-85 (106)
26 cd02113 bact_SoxC_Moco bacteri 39.4 50 0.0011 30.9 4.7 50 185-234 236-294 (326)
27 cd02861 E_set_proteins_like E 36.8 67 0.0014 23.2 4.2 46 190-237 14-62 (82)
28 cd02114 bact_SorA_Moco sulfite 36.2 92 0.002 29.6 6.0 50 185-234 286-345 (367)
29 cd02111 eukary_SO_Moco molybdo 34.7 1E+02 0.0022 29.3 6.0 25 182-206 271-296 (365)
30 PF04149 DUF397: Domain of unk 31.0 1.7E+02 0.0036 20.0 5.1 35 84-142 15-50 (56)
31 PRK10301 hypothetical protein; 30.1 72 0.0016 25.5 3.6 26 145-170 96-124 (124)
32 COG2372 CopC Uncharacterized p 27.7 81 0.0017 25.6 3.5 27 144-170 96-125 (127)
33 KOG4192 Uncharacterized conser 26.7 1.8E+02 0.0038 23.6 5.2 77 125-205 37-123 (134)
34 cd02860 Pullulanase_N_term Pul 26.0 2.4E+02 0.0052 20.9 5.8 33 202-234 39-73 (100)
35 PF03100 CcmE: CcmE; InterPro 25.8 96 0.0021 24.9 3.7 29 221-249 71-100 (131)
36 PF08770 SoxZ: Sulphur oxidati 25.5 1.3E+02 0.0029 23.1 4.2 17 222-238 81-97 (100)
37 PLN03207 stomagen; Provisional 24.3 47 0.001 25.9 1.5 7 5-11 2-8 (113)
38 PRK13159 cytochrome c-type bio 23.0 1E+02 0.0022 25.9 3.4 28 222-249 73-101 (155)
39 PRK13701 psiB plasmid SOS inhi 22.8 2.8E+02 0.006 23.0 5.7 44 148-195 58-105 (144)
40 cd02112 eukary_NR_Moco molybdo 22.7 2.6E+02 0.0056 26.8 6.5 19 188-206 301-320 (386)
41 PF04234 CopC: CopC domain; I 22.4 86 0.0019 23.5 2.7 26 145-170 69-97 (97)
42 PRK13254 cytochrome c-type bio 21.1 1.3E+02 0.0029 24.9 3.7 28 222-249 72-100 (148)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.1e-69 Score=480.51 Aligned_cols=246 Identities=70% Similarity=1.260 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHhhhhccc--CCCCceEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEE
Q 025193 11 FPFLVLFFFISIFVHAING--DYGGWQIAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYE 88 (256)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~e 88 (256)
++-|.|+|-+++.+..+.+ ..++|++|+|||||++++.++.+|||||+++...+++.++||+|+++|++|++||+|||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCye 84 (256)
T PLN00193 5 LLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYR 84 (256)
T ss_pred hHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEE
Confidence 3334444433444444333 55689999999999998888899999999988788899999999999999999999999
Q ss_pred EEEcC--CCCCcCCC-eEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeecccCCce
Q 025193 89 IRCAN--DPQWCLPG-TITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPCVKKGGI 165 (256)
Q Consensus 89 V~c~~--~p~~C~~~-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C~~~gni 165 (256)
|+|.. ++..|.++ +|+|+|||+||+++.+|++|++||.+++.|||||..||.+||....|+++|+||||+|+++|+|
T Consensus 85 v~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i 164 (256)
T PLN00193 85 IMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGV 164 (256)
T ss_pred EECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCc
Confidence 99952 35689876 9999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eEEEcCCccceEEEEEeecCCcceEEEEEEccCCceeecccCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCC
Q 025193 166 RFTINGHSYFNLVLITNVGGAGDVKAVFIKGSKTGWQAMSRNWGQNWQSNSYLDGQSLSFKVTTSDGRTITSYNVVPANW 245 (256)
Q Consensus 166 ~~~v~ss~~w~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvTs~~G~~v~~~~vipa~w 245 (256)
+|++++++||++|+|.|++|+++|++|+|++++++|++|+|.||++|+++.++.+.||+||||+.+|+++++.||||++|
T Consensus 165 ~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W 244 (256)
T PLN00193 165 RFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANW 244 (256)
T ss_pred EEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCC
Confidence 99999999999999999999999999999998788999999999999998878777999999999999999999999999
Q ss_pred CCCcEEecC-CC
Q 025193 246 KFGQTFEGS-QL 256 (256)
Q Consensus 246 ~~G~~y~~~-~~ 256 (256)
++|+||+++ ||
T Consensus 245 ~~G~ty~s~vqf 256 (256)
T PLN00193 245 GFGQTFSSSVQF 256 (256)
T ss_pred CCCCeEecCccC
Confidence 999999998 97
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2.3e-69 Score=478.56 Aligned_cols=239 Identities=77% Similarity=1.335 Sum_probs=220.2
Q ss_pred HHHHHHhhhhcccCCCCceEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCC
Q 025193 17 FFFISIFVHAINGDYGGWQIAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCANDPQ 96 (256)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~ 96 (256)
.-||++|--.+ .+.++|..++|||||++++.++.+|||||+++..++++.++||+|+++|++|++||+||||+|.+++.
T Consensus 9 ~~~~~~~~~~~-~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~ 87 (247)
T PLN00050 9 VALLSILKIVE-GYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNI 87 (247)
T ss_pred HHHhhhheecc-ccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCc
Confidence 33445553322 35678999999999999988889999999998878899999999999999999999999999976556
Q ss_pred CcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeecccCCceeEEEcCCccce
Q 025193 97 WCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPCVKKGGIRFTINGHSYFN 176 (256)
Q Consensus 97 ~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C~~~gni~~~v~ss~~w~ 176 (256)
.|.+++|+|+|||+||+++..|+++++||.+++.|||||..||.+||....|+++|+||||||+++|+|+|++++++||+
T Consensus 88 ~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~ 167 (247)
T PLN00050 88 WCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFN 167 (247)
T ss_pred ccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeE
Confidence 79889999999999999888888899999988999999999999999999999999999999999999999999888999
Q ss_pred EEEEEeecCCcceEEEEEEccCCceeecccCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecCCC
Q 025193 177 LVLITNVGGAGDVKAVFIKGSKTGWQAMSRNWGQNWQSNSYLDGQSLSFKVTTSDGRTITSYNVVPANWKFGQTFEGSQL 256 (256)
Q Consensus 177 av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvTs~~G~~v~~~~vipa~w~~G~~y~~~~~ 256 (256)
+|+|.|++|+++|++|+|++++++|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|++|+++||
T Consensus 168 ~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 168 LVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 99999999999999999999877899999999999999887777799999999999999999999999999999999988
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.6e-62 Score=434.58 Aligned_cols=210 Identities=30% Similarity=0.645 Sum_probs=189.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCcCCCeEEEEEeC
Q 025193 30 DYGGWQIAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCANDPQWCLPGTITVTATN 109 (256)
Q Consensus 30 ~~~~~~~g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~~sv~v~V~D 109 (256)
..++|++++|||||++++.|+.+|||||+++..+.++.++||+| ++|++|++||+||||+|.+ +..|.+++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCCCeEEEEEe
Confidence 34569999999999999888999999999987777888899999 9999999999999999976 668999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhh-------cCCeeeEEEEEeecccCC-ceeEEEc--CC-ccceEE
Q 025193 110 FCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQY-------RAGIVPVLFRRVPCVKKG-GIRFTIN--GH-SYFNLV 178 (256)
Q Consensus 110 ~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~-------~~G~v~i~wr~V~C~~~g-ni~~~v~--ss-~~w~av 178 (256)
.||. + +.|||||..||.+||.+ ..|+|+|+||||||.++| +|+|+|+ ++ ++|++|
T Consensus 99 ~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~v 164 (247)
T PLN03023 99 YGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAI 164 (247)
T ss_pred CCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEE
Confidence 9985 3 58999999999999984 569999999999999999 9999998 43 789999
Q ss_pred EEEeecCCcceEEEEEEccC-CceeecccCCCceEEeCCCCCCcceEEEEE--ecCCcE-EEEccccCCCCCCCcEEecC
Q 025193 179 LITNVGGAGDVKAVFIKGSK-TGWQAMSRNWGQNWQSNSYLDGQSLSFKVT--TSDGRT-ITSYNVVPANWKFGQTFEGS 254 (256)
Q Consensus 179 ~v~n~~g~~~I~sVeI~~~g-~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT--s~~G~~-v~~~~vipa~w~~G~~y~~~ 254 (256)
+|.|++|+++|++|||++++ .+|++|+|+||++|+++.+|+| ||+||++ ..+|++ ++++||||++|++|+||+++
T Consensus 165 lv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~ 243 (247)
T PLN03023 165 VMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSN 243 (247)
T ss_pred EEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecc
Confidence 99999999999999999965 7899999999999999988987 6666664 457754 89999999999999999999
Q ss_pred -CC
Q 025193 255 -QL 256 (256)
Q Consensus 255 -~~ 256 (256)
||
T Consensus 244 vq~ 246 (247)
T PLN03023 244 IQL 246 (247)
T ss_pred ccc
Confidence 87
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.8e-27 Score=194.87 Aligned_cols=181 Identities=21% Similarity=0.320 Sum_probs=152.3
Q ss_pred CceEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCC----CCCCceEEEEEcCCCCCcCCCeEEEEEe
Q 025193 33 GWQIAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG----LSCGACYEIRCANDPQWCLPGTITVTAT 108 (256)
Q Consensus 33 ~~~~g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~eV~c~~~p~~C~~~sv~v~V~ 108 (256)
.-++|.|||-+.. .++||=-. ++.+.+..+.|+++++-+-| +.-|+..+|.+ | +++.+|.||
T Consensus 29 ~~f~G~ATyTgsG----YsGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---P----KG~TTVYVT 94 (232)
T COG4305 29 DLFEGYATYTGSG----YSGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---P----KGKTTVYVT 94 (232)
T ss_pred cccceeEEEeccc----ccCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEEC---C----CCceEEEEe
Confidence 3468999977643 34777654 44455677999999888754 67999999998 5 678999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeecccCCceeEEEc--CCccceEEEEEeecCC
Q 025193 109 NFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPCVKKGGIRFTIN--GHSYFNLVLITNVGGA 186 (256)
Q Consensus 109 D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C~~~gni~~~v~--ss~~w~av~v~n~~g~ 186 (256)
|..|++ . .+.||||+.||.+|+++.+|+++|+||-|+-|.+||+.+++| |+.||-+|||+||.-
T Consensus 95 DlYPeg-----------a--sGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~y- 160 (232)
T COG4305 95 DLYPEG-----------A--SGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHKY- 160 (232)
T ss_pred cccccc-----------c--ccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeecccC-
Confidence 999982 2 589999999999999999999999999999999999999998 678999999999975
Q ss_pred cceEEEEEEccCCceeecccCCCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCC
Q 025193 187 GDVKAVFIKGSKTGWQAMSRNWGQNWQSNSYLDGQSLSFKVTTSDGRTITSY-NVVPAN 244 (256)
Q Consensus 187 ~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvTs~~G~~v~~~-~vipa~ 244 (256)
||.++|+... +.|..|...+||+|...+ +...|+.+|+||+.|+.++.. -.+|..
T Consensus 161 -PV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~ 216 (232)
T COG4305 161 -PVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKS 216 (232)
T ss_pred -ceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccc
Confidence 9999999977 789999999999998655 443599999999999999876 245543
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=6.7e-28 Score=194.07 Aligned_cols=109 Identities=30% Similarity=0.607 Sum_probs=89.9
Q ss_pred HHhhhhcccCCCCceEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCC----CC
Q 025193 21 SIFVHAINGDYGGWQIAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCAND----PQ 96 (256)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~----p~ 96 (256)
..+.+++.+ .+|+||||++++ .||| |++ .+++.++||+|+++|++|..||+||||+|.+. +.
T Consensus 13 ~~~~~~~~~-----~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~ 78 (125)
T PLN03024 13 VFLFSVSYA-----TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPH 78 (125)
T ss_pred HHHhhhhcc-----cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccc
Confidence 444444545 568999999764 5899 444 24678999999999999999999999999652 23
Q ss_pred CcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEE
Q 025193 97 WCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRR 156 (256)
Q Consensus 97 ~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~ 156 (256)
.|.+++|+|+|+|+||+. |. .|||||+.||.+||+++.|+++|+|.+
T Consensus 79 ~c~gksV~V~VtD~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 79 PCTGKSVTVKIVDHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cccCCeEEEEEEcCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 688889999999999951 64 699999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=1.9e-26 Score=174.93 Aligned_cols=86 Identities=80% Similarity=1.495 Sum_probs=79.8
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCCcCCC-eEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcC
Q 025193 69 TAALSTALFNNGLSCGACYEIRCANDPQWCLPG-TITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRA 147 (256)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~~-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~ 147 (256)
+||+|+++|++|++||+||||+|.++|..|.++ +|+|+|||+||+.+..++++++||.+++.|||||..||.+||.+..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 489999999999999999999997556789875 9999999999998888888899999889999999999999999999
Q ss_pred CeeeEEE
Q 025193 148 GIVPVLF 154 (256)
Q Consensus 148 G~v~i~w 154 (256)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=1.5e-23 Score=166.95 Aligned_cols=90 Identities=21% Similarity=0.397 Sum_probs=80.0
Q ss_pred cccCCceeEEEc--CCccceEEEEEeecCCcceEEEEEEccC-Ccee-ecccCCCceEEeCC--CCCCcceEEEEEecCC
Q 025193 159 CVKKGGIRFTIN--GHSYFNLVLITNVGGAGDVKAVFIKGSK-TGWQ-AMSRNWGQNWQSNS--YLDGQSLSFKVTTSDG 232 (256)
Q Consensus 159 C~~~gni~~~v~--ss~~w~av~v~n~~g~~~I~sVeI~~~g-~~W~-~m~r~~g~~W~~~~--~~~g~p~~vRvTs~~G 232 (256)
|.. +|+|+|+ ++++|+++++ | ++|.+|||+++| .+|+ +|+|+||+.|++++ +|+| ||+||+|+.+|
T Consensus 22 ~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G 93 (118)
T PLN00115 22 CAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGG 93 (118)
T ss_pred cCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCC
Confidence 643 8999998 5699997765 3 269999999986 6899 99999999999764 6787 99999999999
Q ss_pred cEEEEccccCCCCCCCcEEecC-CC
Q 025193 233 RTITSYNVVPANWKFGQTFEGS-QL 256 (256)
Q Consensus 233 ~~v~~~~vipa~w~~G~~y~~~-~~ 256 (256)
++++++||||++||+|++|+++ ||
T Consensus 94 ~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 94 GYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CEEEECceECCCCCCCCEEeccccC
Confidence 9999999999999999999999 86
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=4.2e-22 Score=149.69 Aligned_cols=77 Identities=47% Similarity=0.896 Sum_probs=64.1
Q ss_pred eeEEEc--CCccceEEEEEeecCCcceEEEEEEccC-CceeecccCCCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025193 165 IRFTIN--GHSYFNLVLITNVGGAGDVKAVFIKGSK-TGWQAMSRNWGQNWQSN-SYLDGQSLSFKVTTSD-GRTITSYN 239 (256)
Q Consensus 165 i~~~v~--ss~~w~av~v~n~~g~~~I~sVeI~~~g-~~W~~m~r~~g~~W~~~-~~~~g~p~~vRvTs~~-G~~v~~~~ 239 (256)
|+|+|+ |++||++|+|.|++|.++|++|||++++ .+|++|+|.||++|+++ +++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689998 4699999999999999999999999887 67999999999999998 56664 9999999977 99999999
Q ss_pred ccC
Q 025193 240 VVP 242 (256)
Q Consensus 240 vip 242 (256)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=7.5e-19 Score=130.37 Aligned_cols=73 Identities=37% Similarity=0.776 Sum_probs=61.4
Q ss_pred EEEechhccCCCCCCCceEEEEEcC-CCCC--cCC--CeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhh
Q 025193 69 TAALSTALFNNGLSCGACYEIRCAN-DPQW--CLP--GTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIA 143 (256)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~-~p~~--C~~--~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la 143 (256)
+||++..+|++|..||+||+++|.. .... |.. ++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 5899999999999999999999932 1222 777 8999999999998 87 599999999999999
Q ss_pred hhcCCeeeEEE
Q 025193 144 QYRAGIVPVLF 154 (256)
Q Consensus 144 ~~~~G~v~i~w 154 (256)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.08 E-value=1.3e-10 Score=91.31 Aligned_cols=60 Identities=27% Similarity=0.492 Sum_probs=44.8
Q ss_pred CCCCCCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhh----hcCCeeeEEE
Q 025193 79 NGLSCGACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQ----YRAGIVPVLF 154 (256)
Q Consensus 79 ~g~~CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~----~~~G~v~i~w 154 (256)
....||+|++||.+.. +.+++|+|+|+|+. ++|||.+.+|++|-. ...|.+.|.|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 4568999999998753 45999999999886 689999999999942 4679999999
Q ss_pred EEeec
Q 025193 155 RRVPC 159 (256)
Q Consensus 155 r~V~C 159 (256)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=97.95 E-value=6.3e-05 Score=60.26 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=46.7
Q ss_pred eEEEech-hccCCCCCCCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhh--
Q 025193 68 NTAALST-ALFNNGLSCGACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQ-- 144 (256)
Q Consensus 68 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~-- 144 (256)
.|.+... +-|+ +..||.|+|++-. +++|.|..+|.=+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~-------g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYN-------GRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEET-------TEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccCC-CCCCCCeEEEEEC-------CeEEEEEEEecCC-----------------CcccchHHHHHHhcCCc
Confidence 3555554 4564 5789999999984 3499999999732 469999999999976
Q ss_pred -hcCCeeeEEEEEee
Q 025193 145 -YRAGIVPVLFRRVP 158 (256)
Q Consensus 145 -~~~G~v~i~wr~V~ 158 (256)
...|+|+++|++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 35799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.91 E-value=0.00011 Score=63.96 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=67.8
Q ss_pred EEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCC
Q 025193 37 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCANDPQWCLPGTITVTATNFCPPNYA 116 (256)
Q Consensus 37 g~aT~Y~~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~ 116 (256)
|.|+|||+.-.. ..-|.|-... ...++||-. ....|..++|+...+ +.+|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~y~----~~~~tAAHk------tLPlgT~V~VtNl~n-----grsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEVYN----MKALTAAHK------TLPFNTYVKVTNLHN-----NRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCeecC----CCccccccc------cCCCCCEEEEEECCC-----CCEEEEEEeCCCCCC--
Confidence 679999963210 1234432111 112344433 236799999998764 559999999999962
Q ss_pred CCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeeccc
Q 025193 117 LSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPCVK 161 (256)
Q Consensus 117 ~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C~~ 161 (256)
+.--+|||..|+.+|+-...|+.+|+.+.+....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAK 95 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCC
Confidence 1357999999999999999999999999998764
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00019 Score=63.50 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeecc
Q 025193 83 CGACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPCV 160 (256)
Q Consensus 83 CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C~ 160 (256)
=|.-.+|+..++ +.+|+|+|.|++|- .. .-.+|||..|+++|+-...|+.+|..+.+.+.
T Consensus 119 ~~t~v~VtNl~N-----grsvvVRINDRGPf------------~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN-----GRSVVVRINDRGPF------------VS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC-----CcEEEEEEeCCCCC------------CC-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 377789998875 56999999999995 22 36799999999999999999999999999875
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.14 E-value=0.0056 Score=57.60 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=48.6
Q ss_pred CCCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChHHHHHhhhhcCCeeeEEEEEeec
Q 025193 82 SCGACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQPSFLHIAQYRAGIVPVLFRRVPC 159 (256)
Q Consensus 82 ~CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~wr~V~C 159 (256)
.-|..++|+...+ +++|+|+|.|++|-. +.--+|||..|+.+|.-...+.|+|+.-.|.=
T Consensus 114 Plps~vrVtNl~n-----grsvvVrVnDRGP~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~~ 173 (361)
T PRK10672 114 PIPSYVRVTNLAN-----GRMIVVRINDRGPYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVAP 173 (361)
T ss_pred CCCCEEEEEECCC-----CcEEEEEEeCCCCCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeCC
Confidence 4688999999764 569999999999962 13569999999999988777788888777733
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=88.78 E-value=0.48 Score=41.28 Aligned_cols=54 Identities=33% Similarity=0.381 Sum_probs=31.2
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeeeChH
Q 025193 69 TAALSTALFNNGLSCGACYEIRCANDPQWCLPGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAQP 137 (256)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~ 137 (256)
+||++-.-......|++|||++=++.+ -.+++.+|++++.=-+ + ..+||||.-.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d---l----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD---L----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT---T----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC---C----------CCCeEEEEeC
Confidence 566653222233679999999987643 2345999999986322 1 2588998753
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.94 E-value=1.8 Score=33.32 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=12.4
Q ss_pred CcccccchhhhHHHHHHHHHHHhhh
Q 025193 1 MATKANAMKNFPFLVLFFFISIFVH 25 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (256)
||.|+ .|++..+|+++||+|.-.+
T Consensus 1 MaSK~-~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhh
Confidence 78776 3443444445555444433
No 17
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=76.58 E-value=5.8 Score=30.46 Aligned_cols=48 Identities=17% Similarity=0.435 Sum_probs=34.7
Q ss_pred eEEEEEEccCCcee----ecccCCCceEEeC--CC-------CCCcceEEEEEecCCcEEE
Q 025193 189 VKAVFIKGSKTGWQ----AMSRNWGQNWQSN--SY-------LDGQSLSFKVTTSDGRTIT 236 (256)
Q Consensus 189 I~sVeI~~~g~~W~----~m~r~~g~~W~~~--~~-------~~g~p~~vRvTs~~G~~v~ 236 (256)
-++|+|.++-..|. +|+|....+|++. .. ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45777776656675 4988877899864 21 2567999999988888753
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=70.46 E-value=11 Score=30.60 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=28.2
Q ss_pred CCc-ceEEEEEEccC-CceeecccCC--C---------c--eEEeCC--CC-CC-cceEEEEEecCCcE
Q 025193 185 GAG-DVKAVFIKGSK-TGWQAMSRNW--G---------Q--NWQSNS--YL-DG-QSLSFKVTTSDGRT 234 (256)
Q Consensus 185 g~~-~I~sVeI~~~g-~~W~~m~r~~--g---------~--~W~~~~--~~-~g-~p~~vRvTs~~G~~ 234 (256)
|.+ +|++|||..++ .+|++.+... . + .|++.- +. .| --+.+|-||.+|.+
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 345 79999999886 6798765432 2 1 365431 11 33 14666667777653
No 19
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=66.27 E-value=13 Score=34.46 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=31.2
Q ss_pred CcceEEEEEEccC-CceeecccCCCc-------eEEeCC-CCCC-cceEEEEEecCCcE
Q 025193 186 AGDVKAVFIKGSK-TGWQAMSRNWGQ-------NWQSNS-YLDG-QSLSFKVTTSDGRT 234 (256)
Q Consensus 186 ~~~I~sVeI~~~g-~~W~~m~r~~g~-------~W~~~~-~~~g-~p~~vRvTs~~G~~ 234 (256)
...|++|||+.++ .+|++..-.... .|++.- +..| --+.+|.+|..|.+
T Consensus 235 ~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 235 GRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 3579999999887 589876553211 455542 2233 25667778877754
No 20
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.19 E-value=61 Score=30.14 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred EEEEEeecccCCceeEEEc-CCccceEEEEEeecCCcceEEEEEEccCCceeecccCCCceEEeCCCCCCcceEEEEEe-
Q 025193 152 VLFRRVPCVKKGGIRFTIN-GHSYFNLVLITNVGGAGDVKAVFIKGSKTGWQAMSRNWGQNWQSNSYLDGQSLSFKVTT- 229 (256)
Q Consensus 152 i~wr~V~C~~~gni~~~v~-ss~~w~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvTs- 229 (256)
+.|..|+ .+..+.|.+. +++.+ . ..++.++|.+.+|-.. . +.++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~---~--f~~~~s~vAAf~lPan---------------------~-G~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL---N--VAGISGPVAAYSLPAN---------------------I-GELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce---e--cCCCcccEEEEEcccc---------------------c-ccEEEEEEEE
Confidence 5677775 3357788887 56655 1 1234445655555432 1 268888887
Q ss_pred cCCcEEEEcc--ccCCCCCCCcEEecCCC
Q 025193 230 SDGRTITSYN--VVPANWKFGQTFEGSQL 256 (256)
Q Consensus 230 ~~G~~v~~~~--vipa~w~~G~~y~~~~~ 256 (256)
...+.|-+.+ ++=++|++-++|.+.+|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3334666655 55677777777777644
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=45.68 E-value=1.6e+02 Score=23.76 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=39.8
Q ss_pred CceeEEEc------CCccceEEEEEeecCCcceEEEEEEcc---C--------CceeecccCC--CceEEeCCCCCCcce
Q 025193 163 GGIRFTIN------GHSYFNLVLITNVGGAGDVKAVFIKGS---K--------TGWQAMSRNW--GQNWQSNSYLDGQSL 223 (256)
Q Consensus 163 gni~~~v~------ss~~w~av~v~n~~g~~~I~sVeI~~~---g--------~~W~~m~r~~--g~~W~~~~~~~g~p~ 223 (256)
..+.+.+. +.+||.-+.|.|.++ ...++|+|.+. + .+.--+.+.. -..+-..+.|.+.-|
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L 112 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQL 112 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeE
Confidence 35666664 246999999999987 47999999954 1 1122233222 123444444443467
Q ss_pred EEEEEe
Q 025193 224 SFKVTT 229 (256)
Q Consensus 224 ~vRvTs 229 (256)
.||+.+
T Consensus 113 ~irv~g 118 (122)
T TIGR02588 113 RLRVAG 118 (122)
T ss_pred EEEEEe
Confidence 888775
No 22
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=44.69 E-value=12 Score=23.98 Aligned_cols=11 Identities=55% Similarity=0.993 Sum_probs=9.5
Q ss_pred cccCCCCCCCc
Q 025193 239 NVVPANWKFGQ 249 (256)
Q Consensus 239 ~vipa~w~~G~ 249 (256)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48999999985
No 23
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=40.34 E-value=92 Score=22.51 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=35.6
Q ss_pred EEEEeecCCcceEEEEEEccCCcee---ecccCCCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025193 178 VLITNVGGAGDVKAVFIKGSKTGWQ---AMSRNWGQNWQSNSYLDGQSLSFKVTTSDGRTITSY 238 (256)
Q Consensus 178 v~v~n~~g~~~I~sVeI~~~g~~W~---~m~r~~g~~W~~~~~~~g~p~~vRvTs~~G~~v~~~ 238 (256)
+.|+..+ +-.+|+|.|+=.+|+ +|.|..+. |...-.++.+.+..|+.. +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 4455444 367899998755676 58887655 775433332367777764 67887654
No 24
>PLN00177 sulfite oxidase; Provisional
Probab=40.06 E-value=75 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.2
Q ss_pred EeecCCcceEEEEEEccC-Cceeeccc
Q 025193 181 TNVGGAGDVKAVFIKGSK-TGWQAMSR 206 (256)
Q Consensus 181 ~n~~g~~~I~sVeI~~~g-~~W~~m~r 206 (256)
...+|...|++|||..+| .+|+..+.
T Consensus 290 Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 290 ALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EECCCCccEEEEEEEcCCCCCceeeee
Confidence 333333369999999887 68987653
No 25
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=40.04 E-value=1e+02 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=21.0
Q ss_pred eecccCC-CceEEe--CCCCCCcceEEEEEecCCcEE
Q 025193 202 QAMSRNW-GQNWQS--NSYLDGQSLSFKVTTSDGRTI 235 (256)
Q Consensus 202 ~~m~r~~-g~~W~~--~~~~~g~p~~vRvTs~~G~~v 235 (256)
.+|.|.. ...|.. +....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677765 667874 333333468999987555543
No 26
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=39.38 E-value=50 Score=30.95 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCcceEEEEEEccC-CceeecccC--CC-c---eEEeC-CCCCC-cceEEEEEecCCcE
Q 025193 185 GAGDVKAVFIKGSK-TGWQAMSRN--WG-Q---NWQSN-SYLDG-QSLSFKVTTSDGRT 234 (256)
Q Consensus 185 g~~~I~sVeI~~~g-~~W~~m~r~--~g-~---~W~~~-~~~~g-~p~~vRvTs~~G~~ 234 (256)
|.++|++|||..++ .+|+..+.. .+ . .|++. .+..+ --+-+|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 44579999999887 589876543 21 1 23332 12222 24566667777753
No 27
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=36.82 E-value=67 Score=23.20 Aligned_cols=46 Identities=26% Similarity=0.502 Sum_probs=28.9
Q ss_pred EEEEEEccCCce--eecccCCCceEEeCCCC-CCcceEEEEEecCCcEEEE
Q 025193 190 KAVFIKGSKTGW--QAMSRNWGQNWQSNSYL-DGQSLSFKVTTSDGRTITS 237 (256)
Q Consensus 190 ~sVeI~~~g~~W--~~m~r~~g~~W~~~~~~-~g~p~~vRvTs~~G~~v~~ 237 (256)
++|+|.++=..| .+|+|.....|+..-.+ .| .+..|+. .+|++.+.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~-vdg~~~~~ 62 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFV-VDGEWVIV 62 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEE-ECCEEeeC
Confidence 788888764567 46888765678865333 34 4556665 35666533
No 28
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=36.24 E-value=92 Score=29.62 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=30.6
Q ss_pred CCcceEEEEEEccC-Cceeeccc--CCCc----eEEeC-CCC-CC-cceEEEEEecCCcE
Q 025193 185 GAGDVKAVFIKGSK-TGWQAMSR--NWGQ----NWQSN-SYL-DG-QSLSFKVTTSDGRT 234 (256)
Q Consensus 185 g~~~I~sVeI~~~g-~~W~~m~r--~~g~----~W~~~-~~~-~g-~p~~vRvTs~~G~~ 234 (256)
|...|++|||..++ .+|++.+- ..+. .|++. .+. .| --+.+|-||..|.+
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 33579999999887 68987543 2232 35554 222 33 24666667877753
No 29
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.69 E-value=1e+02 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=18.2
Q ss_pred eecCCcceEEEEEEccC-Cceeeccc
Q 025193 182 NVGGAGDVKAVFIKGSK-TGWQAMSR 206 (256)
Q Consensus 182 n~~g~~~I~sVeI~~~g-~~W~~m~r 206 (256)
..+|...|++|||..++ .+|+...-
T Consensus 271 ~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 271 WSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred ECCCCCcEEEEEEECCCCCcceeCCc
Confidence 33343479999999887 58987654
No 30
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=31.01 E-value=1.7e+02 Score=20.04 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCcCCCeEEEEEeCC-CCCCCCCCCCCCCCCCCCCCCeeeChHHHHHh
Q 025193 84 GACYEIRCANDPQWCLPGTITVTATNF-CPPNYALSNDNGGWCNPPLQHFDLAQPSFLHI 142 (256)
Q Consensus 84 G~C~eV~c~~~p~~C~~~sv~v~V~D~-Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~l 142 (256)
|.|+||.-.. +. |-|-|. -|+ ...|.+++.+|..+
T Consensus 15 ~~CVEva~~~-------~~--v~vRDSk~p~---------------~~~L~~t~~eW~aF 50 (56)
T PF04149_consen 15 GNCVEVARLP-------GG--VAVRDSKDPD---------------GPVLTFTPAEWAAF 50 (56)
T ss_pred CCcEEEEeec-------ce--EEEecCCCCC---------------CCEEEeCHHHHHHH
Confidence 8899998642 22 566663 232 47899999999865
No 31
>PRK10301 hypothetical protein; Provisional
Probab=30.10 E-value=72 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.7
Q ss_pred hcCCeeeEEEEEeecc---cCCceeEEEc
Q 025193 145 YRAGIVPVLFRRVPCV---KKGGIRFTIN 170 (256)
Q Consensus 145 ~~~G~v~i~wr~V~C~---~~gni~~~v~ 170 (256)
+..|.+.|+||-|+=+ ..|.++|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 4789999999999986 3568888875
No 32
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=27.69 E-value=81 Score=25.65 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.0
Q ss_pred hhcCCeeeEEEEEeecc---cCCceeEEEc
Q 025193 144 QYRAGIVPVLFRRVPCV---KKGGIRFTIN 170 (256)
Q Consensus 144 ~~~~G~v~i~wr~V~C~---~~gni~~~v~ 170 (256)
++..|.+.++||.|+-+ ..|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 45789999999999987 3678999886
No 33
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=1.8e+02 Score=23.62 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCC-CCCCeeeChHHHHHhhhhcCCeeeEEEEE-------eecccCCceeEEEc-CCccceEEEEEeecCCcceEEEEEE
Q 025193 125 CNP-PLQHFDLAQPSFLHIAQYRAGIVPVLFRR-------VPCVKKGGIRFTIN-GHSYFNLVLITNVGGAGDVKAVFIK 195 (256)
Q Consensus 125 C~~-~~~~~DLS~~AF~~la~~~~G~v~i~wr~-------V~C~~~gni~~~v~-ss~~w~av~v~n~~g~~~I~sVeI~ 195 (256)
|.. ..-||-+...-|..|-+ -....+|++ +.|..-|--+|... |+||=.+|.+.=.++ +.+++|++.
T Consensus 37 cs~k~~~hfivpas~f~ll~g---~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~~ 112 (134)
T KOG4192|consen 37 CSKKQNRHFIVPASRFVLLVG---AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVWE 112 (134)
T ss_pred hhhccceEEEEeccceEEEeC---cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEEE
Confidence 653 35688888777776633 123344443 55655444456665 899999999877664 689999999
Q ss_pred ccC-Cceeecc
Q 025193 196 GSK-TGWQAMS 205 (256)
Q Consensus 196 ~~g-~~W~~m~ 205 (256)
.-+ ++|..+.
T Consensus 113 ~fnGqdwe~~~ 123 (134)
T KOG4192|consen 113 EFNGQDWEATM 123 (134)
T ss_pred EecCcchhHhh
Confidence 665 6776654
No 34
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.00 E-value=2.4e+02 Score=20.92 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=22.3
Q ss_pred eecccCCCceEEeC--CCCCCcceEEEEEecCCcE
Q 025193 202 QAMSRNWGQNWQSN--SYLDGQSLSFKVTTSDGRT 234 (256)
Q Consensus 202 ~~m~r~~g~~W~~~--~~~~g~p~~vRvTs~~G~~ 234 (256)
.+|.|..+.+|.+. +.+.|.-+.+||....++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 47888778889753 3455557889988764444
No 35
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=25.76 E-value=96 Score=24.89 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=17.1
Q ss_pred cceEEEEEecCCc-EEEEccccCCCCCCCc
Q 025193 221 QSLSFKVTTSDGR-TITSYNVVPANWKFGQ 249 (256)
Q Consensus 221 ~p~~vRvTs~~G~-~v~~~~vipa~w~~G~ 249 (256)
..++|.|||...+ .|++..++|++|+.|.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~ 100 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQ 100 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTS
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCC
Confidence 4688888887544 4667789999998875
No 36
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=25.50 E-value=1.3e+02 Score=23.07 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=12.4
Q ss_pred ceEEEEEecCCcEEEEc
Q 025193 222 SLSFKVTTSDGRTITSY 238 (256)
Q Consensus 222 p~~vRvTs~~G~~v~~~ 238 (256)
++.|+.+|++|+...+.
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 78888888888876654
No 37
>PLN03207 stomagen; Provisional
Probab=24.29 E-value=47 Score=25.90 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=3.5
Q ss_pred ccchhhh
Q 025193 5 ANAMKNF 11 (256)
Q Consensus 5 ~~~~~~~ 11 (256)
||+|++.
T Consensus 2 an~~~~~ 8 (113)
T PLN03207 2 ANECMTA 8 (113)
T ss_pred ccccccc
Confidence 4555543
No 38
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.02 E-value=1e+02 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=20.4
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCc
Q 025193 222 SLSFKVTTSDGR-TITSYNVVPANWKFGQ 249 (256)
Q Consensus 222 p~~vRvTs~~G~-~v~~~~vipa~w~~G~ 249 (256)
.++|+|||...+ .|.++.++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 477888876544 4556789999888775
No 39
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=22.80 E-value=2.8e+02 Score=22.96 Aligned_cols=44 Identities=30% Similarity=0.558 Sum_probs=25.5
Q ss_pred CeeeEEEEEeecccCCceeEEEc--C--CccceEEEEEeecCCcceEEEEEE
Q 025193 148 GIVPVLFRRVPCVKKGGIRFTIN--G--HSYFNLVLITNVGGAGDVKAVFIK 195 (256)
Q Consensus 148 G~v~i~wr~V~C~~~gni~~~v~--s--s~~w~av~v~n~~g~~~I~sVeI~ 195 (256)
|-++|+-|+-| . .++..+.+= + +|+|+.|++ +.+|+ ++.-|...
T Consensus 58 GffPVq~Rfsp-~-~~~~~l~vCSpG~~sP~W~~Vl~-~~gG~-~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP-A-HERFHLALCSPGDVSPVWVLVLV-NAGGE-PFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC-C-CCCeEEEEeCCCCCCcceEEEEE-cCCCc-EEEEEEec
Confidence 55566666555 2 235555543 2 899998888 45553 55544444
No 40
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=22.72 E-value=2.6e+02 Score=26.81 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred ceEEEEEEccC-Cceeeccc
Q 025193 188 DVKAVFIKGSK-TGWQAMSR 206 (256)
Q Consensus 188 ~I~sVeI~~~g-~~W~~m~r 206 (256)
.|++|||..+| .+|+....
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred cEEEEEEEcCCCCCceeCCC
Confidence 69999999887 58987644
No 41
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=22.43 E-value=86 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=18.9
Q ss_pred hcCCeeeEEEEEeecc---cCCceeEEEc
Q 025193 145 YRAGIVPVLFRRVPCV---KKGGIRFTIN 170 (256)
Q Consensus 145 ~~~G~v~i~wr~V~C~---~~gni~~~v~ 170 (256)
+..|.+.|+||-|+=+ ..|.+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 5789999999999965 2457888775
No 42
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.06 E-value=1.3e+02 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=19.6
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCc
Q 025193 222 SLSFKVTTSDGR-TITSYNVVPANWKFGQ 249 (256)
Q Consensus 222 p~~vRvTs~~G~-~v~~~~vipa~w~~G~ 249 (256)
.++|+|||.... .|.++.++|+.|+-|.
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~ 100 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQ 100 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCC
Confidence 577888886433 3556678888888765
Done!