Query 025194
Match_columns 256
No_of_seqs 158 out of 391
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 7.4E-66 1.6E-70 460.9 15.9 233 17-256 64-302 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 2.6E-50 5.6E-55 340.6 14.1 168 58-227 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 5.1E-33 1.1E-37 265.5 11.9 200 47-249 274-487 (713)
4 PF08262 Lem_TRP: Leucophaea m 37.6 14 0.00029 17.0 0.3 6 104-109 3-8 (10)
5 PHA02819 hypothetical protein; 34.7 65 0.0014 23.6 3.6 32 198-235 2-33 (71)
6 PF03735 ENT: ENT domain; Int 33.2 72 0.0016 23.4 3.7 32 51-86 26-57 (73)
7 KOG4404 Tandem pore domain K+ 31.3 59 0.0013 30.7 3.7 86 53-144 36-143 (350)
8 PHA02650 hypothetical protein; 30.0 81 0.0017 23.6 3.5 33 198-236 2-34 (81)
9 PHA02975 hypothetical protein; 30.0 85 0.0018 22.9 3.5 32 198-235 2-33 (69)
10 PHA02844 putative transmembran 29.9 81 0.0018 23.3 3.5 33 198-236 2-34 (75)
11 PF11588 DUF3243: Protein of u 25.8 25 0.00055 26.4 0.2 28 64-92 40-67 (81)
12 PHA02692 hypothetical protein; 24.7 1.2E+02 0.0026 22.2 3.5 33 198-236 2-34 (70)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.4e-66 Score=460.88 Aligned_cols=233 Identities=53% Similarity=0.874 Sum_probs=220.1
Q ss_pred hhhheeecccccccc-----ccccccccccCCCCCCCCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCC
Q 025194 17 CCAEVVAGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD 91 (256)
Q Consensus 17 ~~~~~~~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 91 (256)
++.+...|+.+|+|+ ++-|.|...+..+...|..+.+.|+++++.+++++++|||.+|++|+++|++||+.++|+
T Consensus 64 ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~ 143 (302)
T KOG2998|consen 64 ASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPD 143 (302)
T ss_pred cccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCC
Confidence 678999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHhhCcHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHh
Q 025194 92 EELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQML 171 (256)
Q Consensus 92 ~~~~~~~s~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfAva~INiT~~L~~~L 171 (256)
+++++++|++|++|||||+||+|||||+|+|||+||+|||++||+.+++++.+|. ++.|+|||||||||||+|++++|
T Consensus 144 ~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL 221 (302)
T KOG2998|consen 144 KELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQML 221 (302)
T ss_pred CccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 56699999999999999999999
Q ss_pred hhccCCC-ccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHHhcccccccccCCCc
Q 025194 172 DLEAVKP-RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 250 (256)
Q Consensus 172 ~~~~~~~-~~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~L~~~~~~~i~~~~~ 250 (256)
+.++.+. .++....| +++.+|+.|||++|..||++|+++++||||||.|++++|.|++++|++.|+..+.|+|+
T Consensus 222 ~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~ 296 (302)
T KOG2998|consen 222 DLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPA 296 (302)
T ss_pred Hhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Confidence 9998844 33333333 78899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 025194 251 YSLLSR 256 (256)
Q Consensus 251 ~~~~~~ 256 (256)
|++|.+
T Consensus 297 ~~~L~~ 302 (302)
T KOG2998|consen 297 FNLLLQ 302 (302)
T ss_pred hhhhcC
Confidence 999964
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=2.6e-50 Score=340.61 Aligned_cols=168 Identities=43% Similarity=0.767 Sum_probs=152.6
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHhhCcHH
Q 025194 58 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKS 137 (256)
Q Consensus 58 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyF~~~~~~~ 137 (256)
.|+.|++++++|||++|++|+++|++||++++|+.+.+++.+++|+++||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeec-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 025194 138 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR 216 (256)
Q Consensus 138 ~~~il~~q~~~~~~~~yPfAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~aF~eLy~~~F~~f~~~W~~~~ 216 (256)
+++|+.+|.++.+.++||||+||||||.+|+++|+++...+.... .+... +.+.+.+|++|||++|..|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999998776678999999999999999999999766443332 22222 567788999999999999999999999
Q ss_pred CChhcHHHHHH
Q 025194 217 ASYMDFNTVMK 227 (256)
Q Consensus 217 at~mdF~~Vl~ 227 (256)
+|+|||++|+|
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-33 Score=265.48 Aligned_cols=200 Identities=27% Similarity=0.496 Sum_probs=183.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCccc-----------ccchhhhHhHhcCCC-CCCCC
Q 025194 47 PSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPST 114 (256)
Q Consensus 47 ~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~s~~Wk~lGFQg-~dP~T 114 (256)
..++|+.+|...+..+..|+.++.|+.+....+.++++-..+|.++.- .....+..|++||-. .||+.
T Consensus 274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~ 353 (713)
T KOG2999|consen 274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ 353 (713)
T ss_pred chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence 346899999999999999999999999999999999999999877432 235678999999999 99999
Q ss_pred CCC--cchhhHHhhHHHHHhhCcHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeecccc
Q 025194 115 DFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSE 192 (256)
Q Consensus 115 DFR--g~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~ 192 (256)
||- .+|+|+|+||+|||++||+.+.+++.+++++.++++|||+.++|.+|.|||++|+.+++ +......|.|++|.
T Consensus 354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~--p~E~~~df~pmfFt 431 (713)
T KOG2999|consen 354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEP--PDELDRDFIPMFFT 431 (713)
T ss_pred hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCC--chhhcCccceeeec
Confidence 996 99999999999999999999999999999999999999999999999999999999874 34444579999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHHhcccccccccCCC
Q 025194 193 NESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP 249 (256)
Q Consensus 193 ~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~L~~~~~~~i~~~~ 249 (256)
++..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|... +++++++-
T Consensus 432 hd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 432 HDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 999999999999999999999999999999999999999999999976 77777654
No 4
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=37.65 E-value=14 Score=16.99 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.6
Q ss_pred HhcCCC
Q 025194 104 EMGWQG 109 (256)
Q Consensus 104 ~lGFQg 109 (256)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 5
>PHA02819 hypothetical protein; Provisional
Probab=34.72 E-value=65 Score=23.59 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 025194 198 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 235 (256)
Q Consensus 198 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~ 235 (256)
++||++.|=.| |..+-.||+..++.+|+-|..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 57899999888 677888999999999887754
No 6
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=33.21 E-value=72 Score=23.42 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 025194 51 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 86 (256)
Q Consensus 51 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 86 (256)
|+..|+..|..|++..++ +|.+|...|..+-+
T Consensus 26 lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~~~ 57 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELNI----SDEEHREELRRAVS 57 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHhc
Confidence 899999999999877654 58899998888743
No 7
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=31.26 E-value=59 Score=30.72 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccccchhhhHh-------------HhcCCCCCCCCCCC--
Q 025194 53 PAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR-- 117 (256)
Q Consensus 53 ~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk-------------~lGFQg~dP~TDFR-- 117 (256)
..+++++++-++..+..|+-++++-+.+..-+ ..+.|. ..+.+|| .|||-.+.|+||--
T Consensus 36 ~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i-~~s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~ 109 (350)
T KOG4404|consen 36 ARERERLERRLANLKRKYNLSEEDYRELERVI-LKSEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKA 109 (350)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HhcCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCcee
Confidence 45677888888888999998887766555444 333333 4567887 58899999999953
Q ss_pred ---cchhhHHh-hHHH---HHhhCcHHHHHHHHh
Q 025194 118 ---GGGFISLE-NLLY---LARNFPKSFQDLLRK 144 (256)
Q Consensus 118 ---g~G~LgL~-~Lly---F~~~~~~~~~~il~~ 144 (256)
.-|++|.. .|+. |-++-......+++.
T Consensus 110 Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 110 FCMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred hhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 3333 345555555555543
No 8
>PHA02650 hypothetical protein; Provisional
Probab=30.01 E-value=81 Score=23.64 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHH
Q 025194 198 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 236 (256)
Q Consensus 198 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~ 236 (256)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcCC
Confidence 57899999888 6778889999999998876543
No 9
>PHA02975 hypothetical protein; Provisional
Probab=29.96 E-value=85 Score=22.86 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 025194 198 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 235 (256)
Q Consensus 198 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~ 235 (256)
++||++.|=.| |..+-.||+..++.+|+-|..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 57899988887 677888999999998876643
No 10
>PHA02844 putative transmembrane protein; Provisional
Probab=29.89 E-value=81 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHH
Q 025194 198 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 236 (256)
Q Consensus 198 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~ 236 (256)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 57899999888 6778889999999998876543
No 11
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=25.81 E-value=25 Score=26.43 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=15.3
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 025194 64 LRIDVAYDSSIPEHREALRALWNAAFPDE 92 (256)
Q Consensus 64 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 92 (256)
.-..-.+||.|++ +++|++||+.+..++
T Consensus 40 dyLA~~vdP~N~E-erlLkELW~va~e~E 67 (81)
T PF11588_consen 40 DYLAKNVDPKNPE-ERLLKELWDVADEEE 67 (81)
T ss_dssp HHHHT-----SHH-HHHHHHHHHC--HHH
T ss_pred HHHHhcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 3445678999975 799999999875443
No 12
>PHA02692 hypothetical protein; Provisional
Probab=24.69 E-value=1.2e+02 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHH
Q 025194 198 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 236 (256)
Q Consensus 198 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~ 236 (256)
++||++.|=.| |..+-.||+..++.+|+-+...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 57899888887 5556669999999998877554
Done!