Query 025194
Match_columns 256
No_of_seqs 158 out of 391
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 36.5 42 0.0014 25.3 4.2 31 51-85 43-73 (102)
2 3o39_A Periplasmic protein rel 32.7 79 0.0027 23.7 5.3 38 48-85 15-52 (108)
3 2fmm_E Protein EMSY; ENT domai 28.6 63 0.0022 25.4 4.2 52 51-106 35-90 (133)
4 3d0w_A YFLH protein; GRAM-posi 24.9 28 0.00094 26.3 1.4 28 64-92 62-89 (104)
5 2k19_A Putative piscicolin 126 17.8 91 0.0031 23.2 2.9 22 49-70 75-96 (98)
6 2zrr_A Mundticin KS immunity p 15.1 86 0.003 24.1 2.3 22 49-70 95-116 (118)
7 3itf_A Periplasmic adaptor pro 14.4 2.2E+02 0.0075 22.3 4.7 43 45-87 40-82 (145)
8 2xoa_A Ryanodine receptor 1; m 14.1 3.7E+02 0.013 25.7 7.0 97 121-236 442-554 (559)
9 1g2y_A Hepatocyte nuclear fact 13.0 61 0.0021 19.2 0.7 15 49-63 3-17 (32)
10 2c0j_B R32611_2; palmitate; HE 10.5 98 0.0034 24.7 1.5 19 1-19 2-20 (160)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=36.45 E-value=42 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 025194 51 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 85 (256)
Q Consensus 51 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 85 (256)
|+..|+..|..|++..+ .+|.+|...|..+-
T Consensus 43 Lsweke~LLt~LR~~L~----IS~eeH~~elrr~~ 73 (102)
T 1uz3_A 43 LTKEKKDLLGELSKVLS----ISTERHRAEVRRAV 73 (102)
T ss_dssp CCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHhc
Confidence 89999999999976654 56899999887763
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=32.74 E-value=79 Score=23.73 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 025194 48 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 85 (256)
Q Consensus 48 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 85 (256)
-.+||..|+..++.|.+......+....+-.+.|..|-
T Consensus 15 ~L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li 52 (108)
T 3o39_A 15 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDII 52 (108)
T ss_dssp CSCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 37899999999999998777766655544445555443
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=28.58 E-value=63 Score=25.40 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCC---ccc-ccchhhhHhHhc
Q 025194 51 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD---EEL-RDLISEQWKEMG 106 (256)
Q Consensus 51 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~~-~~~~s~~Wk~lG 106 (256)
|+..|+..|..|++..+ .+|.+|...|+++-+.-.-. +.. .+..+.+|..-|
T Consensus 35 LSweke~LLt~LR~~L~----IS~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 35 LTKEKKDLLGELSKVLS----ISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp CCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 89999999999976655 56889999887764421000 000 123467888777
No 4
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=24.88 E-value=28 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=21.3
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 025194 64 LRIDVAYDSSIPEHREALRALWNAAFPDE 92 (256)
Q Consensus 64 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 92 (256)
...--.+||.|++ +++|++||+.+..++
T Consensus 62 dyLA~~vdP~N~E-erlLkELW~Va~eeE 89 (104)
T 3d0w_A 62 DYLAKHEEPQNGE-EMLLQELWSVADEDE 89 (104)
T ss_dssp HHHHTCCCCCSHH-HHHHHHHHHHCCHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 3445678999974 799999999875443
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=17.79 E-value=91 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHhhcccC
Q 025194 49 FDLTPAQEECLQRLQLRIDVAY 70 (256)
Q Consensus 49 ~~L~~~Q~~~L~~L~~~~~~~~ 70 (256)
..||+.|++.|+.|++..++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5689999999999999888765
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=15.07 E-value=86 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccC
Q 025194 49 FDLTPAQEECLQRLQLRIDVAY 70 (256)
Q Consensus 49 ~~L~~~Q~~~L~~L~~~~~~~~ 70 (256)
..|++.|++.|+.|++..++-|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5699999999999998887755
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=14.39 E-value=2.2e+02 Score=22.33 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 025194 45 PRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 87 (256)
Q Consensus 45 ~~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 87 (256)
.....+||+.|+..++.|.+........-+.+..+.|..|...
T Consensus 40 m~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~a 82 (145)
T 3itf_A 40 MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTA 82 (145)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHcc
Confidence 4556889999999999998765554444445555556655444
No 8
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=14.11 E-value=3.7e+02 Score=25.68 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=43.6
Q ss_pred hhHHhhHHHHHhhCcH---------------HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccc
Q 025194 121 FISLENLLYLARNFPK---------------SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGAT 185 (256)
Q Consensus 121 ~LgL~~LlyF~~~~~~---------------~~~~il~~q~~~~~~~~yPfAva~INiT~~L~~~L~~~~~~~~~~~~~~ 185 (256)
...|+.|++|+..-.. .-|+++++| +|-.+|+++++.-.. .. ....
T Consensus 442 ~~~L~dLi~F~~~~~~~~~~~~~q~~~~~~r~RQkLlrEq----------------~il~ll~~il~~l~~--~~-~~~~ 502 (559)
T 2xoa_A 442 ILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEE----------------GMLSLVLNCIDRLNV--YT-TAAH 502 (559)
T ss_dssp HHHHHHHHHHTCCC---------CCHHHHHHHHHHHHHHT----------------THHHHHHHHHHHHTT--SC-C---
T ss_pred HHHHHHHHHHhcCccccccchhccccccccHHHHHHHhhh----------------chHHHHHHHHHHhhc--cC-chhh
Confidence 3467889999864332 245666664 466677777742111 11 1123
Q ss_pred eeeccccch-hhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHH
Q 025194 186 FLKFLSENE-SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 236 (256)
Q Consensus 186 f~~ll~~~~-~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql~~~ 236 (256)
+..+..++. ..+.++...+++++..+=+..+.+-..|.+-+.-+-+||.+.
T Consensus 503 ~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~~ 554 (559)
T 2xoa_A 503 FAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDRL 554 (559)
T ss_dssp ---CCCSTGGGTHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccc
Confidence 333333333 568889999999999999888888888888888888888753
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=12.97 E-value=61 Score=19.17 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHH
Q 025194 49 FDLTPAQEECLQRLQ 63 (256)
Q Consensus 49 ~~L~~~Q~~~L~~L~ 63 (256)
.+|++.|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468899999988774
No 10
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=10.54 E-value=98 Score=24.70 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.7
Q ss_pred CCcchhHHHHhhhhhhhhh
Q 025194 1 MLSFESFFFMFSEIQICCA 19 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (256)
|.|-+.|.|+|+++.+++.
T Consensus 2 m~s~s~f~~l~~elV~~~~ 20 (160)
T 2c0j_B 2 MADTVLFEFLHTEMVAELW 20 (160)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6788999999999998653
Done!