Query 025194
Match_columns 256
No_of_seqs 158 out of 391
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 05:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025194.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025194hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 31.7 19 0.0014 24.8 3.3 32 50-85 30-61 (90)
2 d2c1wa1 d.294.1.1 (A:6-289) En 22.3 55 0.004 26.8 5.2 57 71-132 124-180 (284)
3 d1w36b1 c.37.1.19 (B:1-485) Ex 18.6 14 0.001 30.9 0.5 42 70-113 386-428 (485)
4 d1ya0a1 a.118.8.1 (A:1-497) SM 17.1 99 0.0072 26.1 6.1 71 154-240 217-287 (497)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 12.1 1.9E+02 0.014 19.5 5.6 75 162-236 60-138 (139)
6 d1tada1 a.66.1.1 (A:57-177) Tr 9.4 1.7E+02 0.012 19.9 4.3 9 125-133 90-98 (121)
7 d2ifta1 c.66.1.46 (A:11-193) P 8.4 55 0.004 24.2 1.1 29 116-145 51-85 (183)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 8.3 1.7E+02 0.013 22.7 4.4 54 62-115 177-236 (253)
9 d1myta_ a.1.1.2 (A:) Myoglobin 8.2 2.9E+02 0.021 18.8 5.4 48 51-109 99-146 (146)
10 d1i39a_ c.55.3.1 (A:) Class II 7.4 1.7E+02 0.012 21.4 3.8 41 23-63 8-53 (200)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.71 E-value=19 Score=24.77 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 025194 50 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 85 (256)
Q Consensus 50 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 85 (256)
+|+..|+..|..|++. +..+|.+|...|.++-
T Consensus 30 ~lsweke~lLt~LR~~----L~IS~eeHr~elrr~~ 61 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKV----LSISTERHRAEVRRAV 61 (90)
T ss_dssp SCCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHhc
Confidence 3899999999999765 4566899998887763
No 2
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=22.25 E-value=55 Score=26.83 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHh
Q 025194 71 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLAR 132 (256)
Q Consensus 71 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyF~~ 132 (256)
..+..+..+.|+.||=..++...-....+.-++.+ |=|+ + -||.++.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE---~-k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGE---S-KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSC---S-SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eecc---c-cCCCcccceehHHHHHH
Confidence 34557899999999999876542222345566666 6675 1 26778999999999874
No 3
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.60 E-value=14 Score=30.91 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHh-cCCCCCCC
Q 025194 70 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 113 (256)
Q Consensus 70 ~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~l-GFQg~dP~ 113 (256)
|-.+|+.+.++|+.||... ++..+ -.+|+.|..| ||+|.||.
T Consensus 386 fQDts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 386 FQDTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GGGCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cccCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 4457889999999998642 22222 2478999977 99999874
No 4
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=99 Score=26.08 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHH
Q 025194 154 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 233 (256)
Q Consensus 154 yPfAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~ql 233 (256)
=||+.|--|+..++-...+..+..+.......+ ...|-.+++..| .+.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~---------~~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVY---------LSKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHH---------HTCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHH---------hCCchhhHHHHHHHHHHHH
Confidence 377788888777666554432211111000111 113444443333 2567888999999998888
Q ss_pred HHHhccc
Q 025194 234 ERELLLE 240 (256)
Q Consensus 234 ~~~L~~~ 240 (256)
...++..
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8887644
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=12.11 E-value=1.9e+02 Score=19.51 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhccCCC---ccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCC-CChhcHHHHHHHHHHHHHHH
Q 025194 162 NITFMLIQMLDLEAVKP---RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMKSTRRQLERE 236 (256)
Q Consensus 162 NiT~~L~~~L~~~~~~~---~~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~-at~mdF~~Vl~~~r~ql~~~ 236 (256)
+||.++-.+.+.+-... ....+...+.+-......+.++....-......+.... .....+..+++.+...+++.
T Consensus 60 tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~~ 138 (139)
T d2a61a1 60 TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMERN 138 (139)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 78888888877663211 12223344444333344566666555556666666643 56778888999988888764
No 6
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.45 E-value=1.7e+02 Score=19.91 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=5.8
Q ss_pred hhHHHHHhh
Q 025194 125 ENLLYLARN 133 (256)
Q Consensus 125 ~~LlyF~~~ 133 (256)
++..||-.+
T Consensus 90 Dsa~YF~~~ 98 (121)
T d1tada1 90 DSAGYYLSD 98 (121)
T ss_dssp TTHHHHHTT
T ss_pred cchHHHHHH
Confidence 567777654
No 7
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=8.40 E-value=55 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCcchhhHHhhHH------HHHhhCcHHHHHHHHhh
Q 025194 116 FRGGGFISLENLL------YLARNFPKSFQDLLRKQ 145 (256)
Q Consensus 116 FRg~G~LgL~~Ll------yF~~~~~~~~~~il~~q 145 (256)
|-|+|.+|+++|- +|++..++.+ +++.++
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~N 85 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKN 85 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchh-hhHhhH
Confidence 6799999999994 4888888765 444443
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=8.32 E-value=1.7e+02 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHhCCC-ccc-----ccchhhhHhHhcCCCCCCCCC
Q 025194 62 LQLRIDVAYDSSIPEHREALRALWNAAFPD-EEL-----RDLISEQWKEMGWQGKDPSTD 115 (256)
Q Consensus 62 L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~-~~~-----~~~~s~~Wk~lGFQg~dP~TD 115 (256)
|..-++.|-+.++|++++++.++-+++... .+. .....++|.+.||+----.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 334677888899999999999999887532 221 123457999999985433444
No 9
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=8.17 E-value=2.9e+02 Score=18.81 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCC
Q 025194 51 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 109 (256)
Q Consensus 51 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg 109 (256)
...+.+..+..+++..+ + +++..++-.+++.. ......+.+++.||+|
T Consensus 99 f~~~~~~l~~~l~~~~g--~---t~~~~~AW~k~~~~------i~~~l~~~y~e~g~~~ 146 (146)
T d1myta_ 99 FKLISEVLVKVMHEKAG--L---DAGGQTALRNVMGI------IIADLEANYKELGFSG 146 (146)
T ss_dssp HHHHHHHHHHHHHHHSC--C---CHHHHHHHHHHHHH------HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHCC--C---CHHHHHHHHHHHHH------HHHHHHHHHHHcCCCC
Confidence 34444555555544443 3 34455554444443 2344578899999987
No 10
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.40 E-value=1.7e+02 Score=21.44 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=29.2
Q ss_pred ecccccccccccccccccc-----CCCCCCCCCCCHHHHHHHHHHH
Q 025194 23 AGSAAWLGRGLSCVCAQRR-----ESDPRPSFDLTPAQEECLQRLQ 63 (256)
Q Consensus 23 ~~~~~~~~~~~~c~~~~~~-----~~~~~~~~~L~~~Q~~~L~~L~ 63 (256)
+|.|.|+|-...|.|.=.. +.....|-.||+.|++.|....
T Consensus 8 aGrG~~~GPvvvaav~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I 53 (200)
T d1i39a_ 8 AGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEI 53 (200)
T ss_dssp ECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHH
T ss_pred cCCCCcccceEEEEEEECchhccccccchhhhcCCHHHHHHHHHHH
Confidence 5899999976655544221 3456788899999999886644
Done!