Citrus Sinensis ID: 025195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPAQAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
cEEEEHHHHHHHccHHHHcccccHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEEEEccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccEEEEEcccccHHHHHHHHHHHccccccccEEcccccccc
cHHHHHHHHHHHccHHHHcccccHHHHHHHHHccHHHHHHHcccHHHHHccccccccccHHHccccccccccccccccccccccHHHHcccccccccccHHHcccccccHHHHHHHcccccccccHcHHHHHHHHccccccEEEEEEEcccHHHcEEEHcccHHHHHHHHHHHHHHHHHEEEEEEEccccccEEEEEEEEcccccccccccccccccEEEEEcccccHHHHHHHHHHHHccccccccEcccccEcc
MICNLYYGFKLIMtksftsefphveRYFWTVANQPKIKKFLGdfkqaesvpavqsakkpaqakesakpkakaepkkeapkpkaeaaeeeeapkpkpknpldllppskmilddWKRLYSNTKSNFREVAIKGfwdmydpegyslwfcdykyndentVSFVTLNKVSGFLQRMDLARKYAFGKmliigneppykvkglwlfrgpeipkfvmdecydmelydwkkadisdEEQKERVNQMIedhepfegealldakcfk
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESvpavqsakkpaqakesakpkakaepkkeapkpkaeaaeeeeapkpkpknpldllppSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDhepfegealldakcfk
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSakkpaqakesakpkakaepkkeapkpkaeaaeeeeapkpkpknpldllppSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
*ICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDF***************************************************************MILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKA*********************************
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQA*******************************************************LPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQ*************************************************PKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPA*******************************************PKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
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MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPAQAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q5Z627416 Elongation factor 1-gamma yes no 0.992 0.610 0.816 1e-114
O04487414 Probable elongation facto yes no 0.980 0.606 0.784 1e-112
Q6YW46418 Elongation factor 1-gamma no no 0.992 0.607 0.817 1e-112
Q9FUM1422 Elongation factor 1-gamma N/A no 1.0 0.606 0.773 1e-112
Q9ZRI7418 Elongation factor 1-gamma no no 1.0 0.612 0.773 1e-107
Q9FVT2413 Probable elongation facto no no 0.972 0.602 0.785 1e-106
P29694437 Elongation factor 1-gamma yes no 0.992 0.581 0.344 2e-36
Q9D8N0437 Elongation factor 1-gamma yes no 0.992 0.581 0.340 4e-36
A2Q127437 Elongation factor 1-gamma yes no 0.992 0.581 0.340 8e-36
P26641437 Elongation factor 1-gamma yes no 0.988 0.578 0.342 1e-35
>sp|Q5Z627|EF1G3_ORYSJ Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1 Back     alignment and function desciption
 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/256 (81%), Positives = 224/256 (87%), Gaps = 2/256 (0%)

Query: 1   MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPA 60
           M CNLYYGF  I+ KSFTSEFPHVERYFWT+ NQP  KK +GDFKQAESVP VQ  KK A
Sbjct: 163 MTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQ--KKAA 220

Query: 61  QAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNT 120
             KES   +AK E  KEAPKPK EA+EEEEAPKPKPKNPLDLLPPSKMILD+WKRLYSNT
Sbjct: 221 PPKESKAKEAKKEAPKEAPKPKVEASEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNT 280

Query: 121 KSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFG 180
           K+NFRE+AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFG
Sbjct: 281 KTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFG 340

Query: 181 KMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIED 240
           KML+IG+ PP+KVKGLWLFRG +IPKFVMDE YDMELY+W K D+SDE QKERVN MIED
Sbjct: 341 KMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIED 400

Query: 241 HEPFEGEALLDAKCFK 256
            EPFEGE LLDAKCFK
Sbjct: 401 QEPFEGEDLLDAKCFK 416
Probably plays a role in anchoring the complex to other cellular components.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|O04487|EF1G1_ARATH Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1 Back     alignment and function description
>sp|Q6YW46|EF1G2_ORYSJ Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2 Back     alignment and function description
>sp|Q9FUM1|EF1G_PRUAV Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1 Back     alignment and function description
>sp|Q9ZRI7|EF1G1_ORYSJ Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVT2|EF1G2_ARATH Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1 Back     alignment and function description
>sp|P29694|EF1G_RABIT Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3 Back     alignment and function description
>sp|Q9D8N0|EF1G_MOUSE Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3 Back     alignment and function description
>sp|A2Q127|EF1G_HORSE Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1 Back     alignment and function description
>sp|P26641|EF1G_HUMAN Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
227937359 418 translation elongation factor [Citrus ma 1.0 0.612 0.992 1e-147
225465198 423 PREDICTED: elongation factor 1-gamma-lik 1.0 0.605 0.819 1e-121
147789055 423 hypothetical protein VITISV_021574 [Viti 1.0 0.605 0.812 1e-120
413926103 414 elongation factor 1-gamma 2 [Zea mays] g 0.976 0.603 0.798 1e-117
242096224 417 hypothetical protein SORBIDRAFT_10g02257 0.992 0.609 0.797 1e-116
226530767 414 elongation factor 1-gamma 2 [Zea mays] g 0.976 0.603 0.794 1e-116
440573520 421 EF1Bgamma class glutathione S-transferas 0.996 0.605 0.796 1e-115
226505800 417 elongation factor 1-gamma 3 [Zea mays] g 0.992 0.609 0.785 1e-115
413943829 417 elongation factor gamma1 [Zea mays] 0.992 0.609 0.782 1e-115
413954357 382 hypothetical protein ZEAMMB73_710904 [Ze 0.992 0.664 0.785 1e-115
>gi|227937359|gb|ACP43319.1| translation elongation factor [Citrus maxima] Back     alignment and taxonomy information
 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/256 (99%), Positives = 255/256 (99%)

Query: 1   MICNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPA 60
           MICNLYYGFK IMTK+FTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPA
Sbjct: 163 MICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSAKKPA 222

Query: 61  QAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNT 120
           QAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNT
Sbjct: 223 QAKESAKPKAKAEPKKEAPKPKAEAAEEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNT 282

Query: 121 KSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFG 180
           KSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFG
Sbjct: 283 KSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFG 342

Query: 181 KMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIED 240
           KMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIED
Sbjct: 343 KMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIED 402

Query: 241 HEPFEGEALLDAKCFK 256
           HEPFEGEALLDAKCFK
Sbjct: 403 HEPFEGEALLDAKCFK 418

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465198|ref|XP_002264400.1| PREDICTED: elongation factor 1-gamma-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789055|emb|CAN75785.1| hypothetical protein VITISV_021574 [Vitis vinifera] Back     alignment and taxonomy information
>gi|413926103|gb|AFW66035.1| elongation factor 1-gamma 2 [Zea mays] gi|413926104|gb|AFW66036.1| elongation factor 1-gamma 2 [Zea mays] Back     alignment and taxonomy information
>gi|242096224|ref|XP_002438602.1| hypothetical protein SORBIDRAFT_10g022570 [Sorghum bicolor] gi|241916825|gb|EER89969.1| hypothetical protein SORBIDRAFT_10g022570 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226530767|ref|NP_001151229.1| elongation factor 1-gamma 2 [Zea mays] gi|195645182|gb|ACG42059.1| elongation factor 1-gamma 2 [Zea mays] Back     alignment and taxonomy information
>gi|440573520|gb|AGC13144.1| EF1Bgamma class glutathione S-transferase [Pinus tabuliformis] Back     alignment and taxonomy information
>gi|226505800|ref|NP_001148829.1| elongation factor 1-gamma 3 [Zea mays] gi|195622440|gb|ACG33050.1| elongation factor 1-gamma 3 [Zea mays] gi|413954360|gb|AFW87009.1| elongation factor 1-gamma 3 [Zea mays] Back     alignment and taxonomy information
>gi|413943829|gb|AFW76478.1| elongation factor gamma1 [Zea mays] Back     alignment and taxonomy information
>gi|413954357|gb|AFW87006.1| hypothetical protein ZEAMMB73_710904 [Zea mays] gi|413954358|gb|AFW87007.1| hypothetical protein ZEAMMB73_710904 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2024311414 AT1G09640 [Arabidopsis thalian 0.589 0.364 0.887 7.9e-93
TAIR|locus:2206535413 AT1G57720 [Arabidopsis thalian 0.589 0.365 0.887 2.1e-92
DICTYBASE|DDB_G0282979410 efa1G "elongation factor 1 gam 0.574 0.358 0.382 3.1e-31
ZFIN|ZDB-GENE-020423-3486 eef1g "eukaryotic translation 0.531 0.279 0.349 5.6e-31
MGI|MGI:1914410437 Eef1g "eukaryotic translation 0.578 0.338 0.348 1.1e-30
UNIPROTKB|P26641437 EEF1G "Elongation factor 1-gam 0.578 0.338 0.348 2.3e-30
RGD|1302939437 Eef1g "eukaryotic translation 0.578 0.338 0.341 2.4e-30
UNIPROTKB|F1MG05440 EEF1G "Elongation factor 1-gam 0.578 0.336 0.354 2.5e-30
UNIPROTKB|Q29387432 EEF1G "Elongation factor 1-gam 0.578 0.342 0.341 4.7e-30
UNIPROTKB|F1RPW9439 EEF1G "Elongation factor 1-gam 0.578 0.337 0.341 5.5e-30
TAIR|locus:2024311 AT1G09640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 741 (265.9 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 134/151 (88%), Positives = 141/151 (93%)

Query:   106 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVS 165
             S M+LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKV 
Sbjct:   264 SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVG 323

Query:   166 GFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADI 225
             GFLQRMDLARKY+FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DI
Sbjct:   324 GFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDI 383

Query:   226 SDEEQKERVNQMIEDHEPFEGEALLDAKCFK 256
             SDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:   384 SDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414
GO:0003746 "translation elongation factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA
GO:0006414 "translational elongation" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2206535 AT1G57720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282979 efa1G "elongation factor 1 gamma" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020423-3 eef1g "eukaryotic translation elongation factor 1 gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914410 Eef1g "eukaryotic translation elongation factor 1 gamma" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P26641 EEF1G "Elongation factor 1-gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1302939 Eef1g "eukaryotic translation elongation factor 1 gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG05 EEF1G "Elongation factor 1-gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29387 EEF1G "Elongation factor 1-gamma" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RPW9 EEF1G "Elongation factor 1-gamma" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FUM1EF1G_PRUAVNo assigned EC number0.77301.00.6066N/Ano
Q5Z627EF1G3_ORYSJNo assigned EC number0.81640.99210.6105yesno
O04487EF1G1_ARATHNo assigned EC number0.78430.98040.6062yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb10g022570.1
hypothetical protein (418 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb09g004630.1
hypothetical protein (156 aa)
      • 0.633
Sb02g003090.1
hypothetical protein (222 aa)
      • 0.633
Sb03g006610.1
hypothetical protein (158 aa)
   •    0.519
Sb03g009210.1
annotation not avaliable (202 aa)
   •    0.505
Sb10g006620.1
hypothetical protein (143 aa)
   •    0.504
Sb07g001570.1
hypothetical protein (110 aa)
   •    0.502
Sb01g030990.1
hypothetical protein (243 aa)
      • 0.497
Sb01g030820.1
hypothetical protein (236 aa)
      • 0.497
Sb01g030810.1
hypothetical protein (239 aa)
      • 0.497
Sb01g005990.1
hypothetical protein (226 aa)
      • 0.496

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
pfam00647105 pfam00647, EF1G, Elongation factor 1 gamma, conser 3e-50
cd03181123 cd03181, GST_C_EF1Bgamma_like, Glutathione S-trans 2e-14
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 4e-04
TIGR02927 579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 7e-04
PRK04950213 PRK04950, PRK04950, ProP expression regulator; Pro 0.002
pfam14181155 pfam14181, YqfQ, YqfQ-like protein 0.003
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.003
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 0.004
PRK00708209 PRK00708, PRK00708, sec-independent translocase; P 0.004
PRK14520155 PRK14520, rpsP, 30S ribosomal protein S16; Provisi 0.004
>gnl|CDD|201369 pfam00647, EF1G, Elongation factor 1 gamma, conserved domain Back     alignment and domain information 
 Score =  159 bits (405), Expect = 3e-50
 Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 2/107 (1%)

Query: 97  KNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 156
           KNPLD LP S   LD+WKR YSN  +  R VA+  FW+ +DPEGYS+W+ +YKYNDE  +
Sbjct: 1   KNPLDALPKSTFNLDEWKRQYSNEDT--RTVALPYFWEHFDPEGYSIWYVEYKYNDELKL 58

Query: 157 SFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPE 203
            F+T N + GF QR++ +RKYAFG + + G +    + G+W+FRG E
Sbjct: 59  VFMTCNLIGGFFQRLEKSRKYAFGSVSVYGEDNNSDISGVWVFRGQE 105

Length = 105
>gnl|CDD|198290 cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional Back     alignment and domain information
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG1627160 consensus Translation elongation factor EF-1 gamma 100.0
PF00647107 EF1G: Elongation factor 1 gamma, conserved domain; 100.0
cd03181123 GST_C_EFB1gamma GST_C family, Gamma subunit of Elo 96.75
cd03204111 GST_C_GDAP1 GST_C family, Ganglioside-induced diff 91.36
cd03187118 GST_C_Phi GST_C family, Class Phi subfamily; compo 91.25
PF0004395 GST_C: Glutathione S-transferase, C-terminal domai 90.42
cd03178113 GST_C_Ure2p_like GST_C family, Ure2p-like subfamil 90.37
cd03207103 GST_C_8 GST_C family, unknown subfamily 8; compose 90.17
cd03188114 GST_C_Beta GST_C family, Class Beta subfamily; GST 89.65
cd03185126 GST_C_Tau GST_C family, Class Tau subfamily; GSTs 88.95
cd03203120 GST_C_Lambda GST_C family, Class Lambda subfamily; 87.95
cd03183126 GST_C_Theta GST_C family, Class Theta subfamily; c 87.52
cd03196115 GST_C_5 GST_C family, unknown subfamily 5; compose 87.12
cd03210126 GST_C_Pi GST_C family, Class Pi subfamily; GSTs ar 86.38
cd03191121 GST_C_Zeta GST_C family, Class Zeta subfamily; GST 86.15
cd03209121 GST_C_Mu GST_C family, Class Mu subfamily; GSTs ar 85.39
cd03190142 GST_C_ECM4_like GST_C family, ECM4-like subfamily; 80.69
>KOG1627 consensus Translation elongation factor EF-1 gamma [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-76  Score=491.79  Aligned_cols=156  Identities=51%  Similarity=0.930  Sum_probs=150.9

Q ss_pred             CCCCCCCCCCcchhhhhhhhccCCCccchhhhhhhhhccCCCCceEEEEeeecCCCcceeEEeccchhhHhhhhHHhhhh
Q 025195           98 NPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKY  177 (256)
Q Consensus        98 ~Pl~~Lp~s~f~ld~wKr~YSN~dt~~~~~alp~Fwe~fd~egySlW~~~Yky~~El~~~Fms~Nli~Gf~QRle~~rK~  177 (256)
                      |||++||+|+|+||+|||+|||+||  +.+||||||||||+||||||+|+||||+||+++||||||||||||||+++|||
T Consensus         1 ~pl~~lp~~~Fvldd~kr~ySn~dt--~~~a~P~f~e~~d~e~ys~w~~~Yky~eeL~~~fms~nli~g~~qrl~~~rk~   78 (160)
T KOG1627|consen    1 DPLDLLPKSTFVLDDWKRKYSNEDT--REVALPWFWEHFDPEGYSLWKVDYKYNEELTLTFMSCNLIGGFFQRLDKSRKY   78 (160)
T ss_pred             CchhhCCCCccchhhhhhhhccccc--ccccchHHHHHhCcccceeeeccccCchHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            7999999999999999999999999  78999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEeeCCCcceEEEEEEeCCCCCcccc--ccccCccceeeEEcCCCCHHHHHHHHHHHccCCCC--CCeeecccc
Q 025195          178 AFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVM--DECYDMELYDWKKADISDEEQKERVNQMIEDHEPF--EGEALLDAK  253 (256)
Q Consensus       178 aFg~~~v~Ge~~~~~I~Gvw~~RGq~~p~~~~--~~~~d~esy~~~KLD~~~~edk~~v~~y~~w~~~~--~g~~~~~gk  253 (256)
                      +||||+|+|+|++++|+|+|+||||++ +|.|  |++||||||+||||||+++|+|++|++||+|++++  .||.++|||
T Consensus        79 ~f~~~~~~g~~~~~~i~g~~~~rg~el-a~~~spDwq~D~EsY~~tKLD~~see~k~~V~ey~sWeg~f~~~Gkaf~qgK  157 (160)
T KOG1627|consen   79 AFGSMVLFGENGNSTISGAWVFRGQEL-APAFSPDWQPDYESYTWTKLDPGSEETKELVNEYFSWEGPFEGNGKAFNDGK  157 (160)
T ss_pred             hheeEEEeccCCCCcceEEEEEecccc-ccccCccccccccceeeeecCCCCHHHHHHHHHHHhhcccccccchhhhccc
Confidence            999999999999999999999999997 3466  89999999999999999999999999999999975  569999999


Q ss_pred             ccC
Q 025195          254 CFK  256 (256)
Q Consensus       254 vfK  256 (256)
                      |||
T Consensus       158 i~K  160 (160)
T KOG1627|consen  158 IFK  160 (160)
T ss_pred             ccC
Confidence            998

>PF00647 EF1G: Elongation factor 1 gamma, conserved domain; InterPro: IPR001662 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis Back     alignment and domain information
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells Back     alignment and domain information
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins Back     alignment and domain information
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione Back     alignment and domain information
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs Back     alignment and domain information
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs Back     alignment and domain information
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress Back     alignment and domain information
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress Back     alignment and domain information
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs Back     alignment and domain information
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase Back     alignment and domain information
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs Back     alignment and domain information
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress Back     alignment and domain information
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress Back     alignment and domain information
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress Back     alignment and domain information
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
1pbu_A162 Solution Structure Of The C-Terminal Domain Of The 2e-20
>pdb|1PBU|A Chain A, Solution Structure Of The C-Terminal Domain Of The Human Eef1bgamma Subunit Length = 162 Back     alignment and structure 
Iteration: 1

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 5/154 (3%)
Query: 106 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVS 165
           S   LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++
Sbjct: 11  STFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLIT 68
Query: 166 GFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKAD 224
           G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D
Sbjct: 69  GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLD 128
Query: 225 ISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 256
              EE +  V +       F+  G+A    K FK
Sbjct: 129 PGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 162

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
1pbu_A162 Elongation factor 1-gamma; alpha/beta, translation 1e-66
1nhy_A219 EF-1-gamma 1, elongation factor 1-gamma 1; protein 7e-10
2uz8_A174 Eukaryotic translation elongation factor 1 epsilon 2e-07
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 8e-04
>1pbu_A Elongation factor 1-gamma; alpha/beta, translation; NMR {Homo sapiens} SCOP: d.58.46.1 Length = 162 Back     alignment and structure
 Score =  202 bits (516), Expect = 1e-66
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 97  KNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 156
           K+P   LP S   LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T 
Sbjct: 2   KDPFAHLPKSTFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQ 59

Query: 157 SFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDM 215
           +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D 
Sbjct: 60  TFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDY 119

Query: 216 ELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 256
           E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct: 120 ESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 162
>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 Length = 219 Back     alignment and structure
>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} Length = 174 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
1pbu_A162 Elongation factor 1-gamma; alpha/beta, translation 100.0
2hra_A209 Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l 94.46
3tou_A226 Glutathione S-transferase protein; GSH binding sit 92.79
3lxz_A229 Glutathione S-transferase family protein; structur 92.29
3iso_A218 Putative glutathione transferase; GST; HET: GSH; 1 92.27
3gtu_B224 Glutathione S-transferase; conjugation, detoxifica 91.97
1dug_A234 Chimera of glutathione S-transferase-synthetic lin 91.97
4exj_A238 Uncharacterized protein; transferase-like protein, 91.46
3ubk_A242 Glutathione transferase; GSH binding; 1.95A {Lepto 90.39
1gsu_A219 GST, CGSTM1-1, class-MU glutathione S-transferase; 90.37
1oyj_A231 Glutathione S-transferase; herbicide detoxificatio 90.29
2fhe_A216 GST, glutathione S-transferase; transferase-substr 90.08
2hqt_A124 GU4 nucleic-binding protein 1; GST-fold, biosynthe 90.02
1b8x_A280 Protein (AML-1B); nuclear matrix targeting signal 89.93
2vo4_A219 2,4-D inducible glutathione S-transferase; herbici 89.92
3ik7_A222 Glutathione S-transferase A4; human GST A4-4, enzy 89.41
2c4j_A218 Glutathione S-transferase MU 2; glutathione transf 89.08
3q18_A239 GSTO-2, glutathione S-transferase omega-2; glutath 88.35
4dej_A231 Glutathione S-transferase related protein; transfe 87.54
1b48_A221 GST, mgsta4-4, protein (glutathione S-transferase) 87.42
1k3y_A221 GSTA1-1, glutathione S-transferase A1; S-hexyl glu 86.88
3lyk_A216 Stringent starvation protein A homolog; structural 86.55
4ecj_A244 Glutathione S-transferase; transferase-like protei 85.42
3m8n_A225 Possible glutathione S-transferase; PSI-II, struct 84.98
1vf1_A229 Glutathione S-transferase 3; detoxification; HET: 84.81
3vln_A241 GSTO-1, glutathione S-transferase omega-1; GST fol 84.69
1gwc_A230 Glutathione S-transferase TSI-1; herbicide detoxif 84.22
3h1n_A252 Probable glutathione S-transferase; APC84167, bord 83.51
4hz4_A217 Glutathione-S-transferase; enzyme function initiat 83.35
1bg5_A254 MAB, fusion protein of alpha-Na,K-ATPase with glut 83.2
4hi7_A228 GI20122; GST, glutathione S-transferase, enzyme fu 82.74
3uar_A227 Glutathione S-transferase; GSH binding site; HET: 82.68
1ljr_A244 HGST T2-2, glutathione S-transferase; HET: GSH; 3. 81.67
2ahe_A267 Chloride intracellular channel protein 4; glutathi 81.38
3rbt_A246 Glutathione transferase O1; glutathione S-transfer 80.13
>1pbu_A Elongation factor 1-gamma; alpha/beta, translation; NMR {Homo sapiens} SCOP: d.58.46.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-83  Score=545.11  Aligned_cols=158  Identities=35%  Similarity=0.732  Sum_probs=154.0

Q ss_pred             CCCCCCCCCCCCcchhhhhhhhccCCCccchhhhhhhhhccCCCCceEEEEeeecCCCcceeEEeccchhhHhhhhHHhh
Q 025195           96 PKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLAR  175 (256)
Q Consensus        96 ~k~Pl~~Lp~s~f~ld~wKr~YSN~dt~~~~~alp~Fwe~fd~egySlW~~~Yky~~El~~~Fms~Nli~Gf~QRle~~r  175 (256)
                      +||||++||||+|+||+|||+|||+||  +++||||||||||+||||||+|+||||+|||++|||||||||||||||++|
T Consensus         1 ~k~Pl~~Lp~s~f~lD~wKR~YSN~dt--~~~a~p~Fwe~fD~egySlw~~~Yky~del~~~FMs~NLI~GffQRle~~r   78 (162)
T 1pbu_A            1 AKDPFAHLPKSTFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLR   78 (162)
T ss_dssp             CCCGGGSSCCCCSCHHHHHHHHHHSCG--GGTHHHHHHSSCCTTTCEEEEECCSCGGGCCCSTTHHHHHHHHHHHGGGTG
T ss_pred             CcChHHhCCCCCCCHHHHhhhccCCCc--hhhHHHHHHHhCCcccceEEEEEecCcccccceEEEechhhhHHHHHHHhh
Confidence            589999999999999999999999999  899999999999999999999999999999999999999999999999999


Q ss_pred             hhcceeEEEEeeCCCcceEEEEEEeCCCCCcccccc--ccCccceeeEEcCCCCHHHHHHHHHHHccCCC--CCCeeecc
Q 025195          176 KYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDE--CYDMELYDWKKADISDEEQKERVNQMIEDHEP--FEGEALLD  251 (256)
Q Consensus       176 K~aFg~~~v~Ge~~~~~I~Gvw~~RGq~~p~~~~~~--~~d~esy~~~KLD~~~~edk~~v~~y~~w~~~--~~g~~~~~  251 (256)
                      |||||||+|||++++++|+||||||||++ +|.+++  ++|||||+|+|||++++|||++|++||||+++  ++||+++|
T Consensus        79 KyaFg~~~v~Ge~~~~~I~Gvwv~RGq~~-~f~l~~d~~~D~esy~w~KLD~~~~e~k~~v~~y~~w~~~~~~~Gk~~~d  157 (162)
T 1pbu_A           79 KNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQ  157 (162)
T ss_dssp             GGEEECCEEESCSTTCEEEEEEEESSSSC-SGGGCGGGCSSGGGSCCEECCTTSSHHHHHHHHHHHSCSCCTTTCSCCCE
T ss_pred             heeeEEEEEEecCCCceEEEEEEEecCcc-eeeecccccccccceEEEEcCCCCHHHHHHHHHHhhcCCCcccCCEEccc
Confidence            99999999999999999999999999999 568876  88999999999999999999999999999997  89999999


Q ss_pred             ccccC
Q 025195          252 AKCFK  256 (256)
Q Consensus       252 gkvfK  256 (256)
                      |||||
T Consensus       158 gKvfK  162 (162)
T 1pbu_A          158 GKIFK  162 (162)
T ss_dssp             ECCCC
T ss_pred             ccccC
Confidence            99998
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A Back     alignment and structure
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A* Back     alignment and structure
>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* Back     alignment and structure
>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} Back     alignment and structure
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* Back     alignment and structure
>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239} Back     alignment and structure
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A* Back     alignment and structure
>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* Back     alignment and structure
>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* Back     alignment and structure
>2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2 PDB: 2hrk_B 2hsm_B 2hsn_B Back     alignment and structure
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A* Back     alignment and structure
>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* Back     alignment and structure
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... Back     alignment and structure
>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A* Back     alignment and structure
>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis} Back     alignment and structure
>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A Back     alignment and structure
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... Back     alignment and structure
>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae} Back     alignment and structure
>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A* Back     alignment and structure
>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} Back     alignment and structure
>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A Back     alignment and structure
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A* Back     alignment and structure
>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} Back     alignment and structure
>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae} Back     alignment and structure
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 Back     alignment and structure
>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis} Back     alignment and structure
>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A* Back     alignment and structure
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* Back     alignment and structure
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A Back     alignment and structure
>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1pbua_162 d.58.46.1 (A:) Elongation factor 1-gamma C-termina 4e-69
>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF1-gamma domain
family: eEF1-gamma domain
domain: Elongation factor 1-gamma C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  208 bits (531), Expect = 4e-69
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 97  KNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 156
           K+P   LP S   LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T 
Sbjct: 2   KDPFAHLPKSTFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQ 59

Query: 157 SFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDM 215
           +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D 
Sbjct: 60  TFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDY 119

Query: 216 ELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 256
           E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct: 120 ESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 162

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1pbua_162 Elongation factor 1-gamma C-terminal domain {Human 100.0
d1nhya1144 GST-like domain of elongation factor 1-gamma {Bake 98.13
d1axda1129 Class phi GST {Maize (Zea mays), type I [TaxId: 45 94.43
d1aw9a1135 Class phi GST {Maize (Zea mays), type III [TaxId: 93.89
d1f2ea1121 Class beta GST {Sphingomonas paucimobilis [TaxId: 92.88
d1pmta1121 Class beta GST {Proteus mirabilis [TaxId: 584]} 92.71
d2a2ra1132 Class pi GST {Human (Homo sapiens) [TaxId: 9606]} 92.7
d2cvda1124 Class sigma GST {Human (Homo sapiens) [TaxId: 9606 92.56
d1v2aa1125 Class delta GST {Mosquito (Anopheles dirus b), iso 92.53
d2gsqa1127 Class sigma GST {Squid (Ommastrephes sloani pacifi 92.12
d1n2aa1121 Class beta GST {Escherichia coli [TaxId: 562]} 91.85
d1m0ua1127 Class sigma GST {Fruit fly (Drosophila melanogaste 91.23
d1k3ya1142 Class alpha GST {Human (Homo sapiens), (a1-1) [Tax 90.83
d1gwca1138 Class tau GST {Aegilops tauschii, also known as Tr 90.62
d1fw1a1125 Class zeta GST {Human (Homo sapiens) [TaxId: 9606] 90.39
d1b48a1143 Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax 90.37
d1jlva1123 Class delta GST {Mosquito (Anopheles dirus b), iso 89.93
d2hrkb1118 GU4 nucleic-binding protein 1, Arc1p {Baker's yeas 89.27
d3gtub1140 Class mu GST {Human (Homo sapiens) [TaxId: 9606]} 88.97
d1gsua1133 Class mu GST {Chicken (Gallus gallus) [TaxId: 9031 87.71
d1r5aa1129 Class delta GST {Mosquito (Anopheles dirus b), iso 87.3
d1duga1140 Class alpha GST {Schistosoma japonicum [TaxId: 618 87.22
d2gsta1133 Class mu GST {Rat (Rattus norvegicus) [TaxId: 1011 86.89
d1oyja1145 Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} 86.82
d2c4ja1133 Class mu GST {Human (Homo sapiens) [TaxId: 9606]} 86.71
d1eema1139 Class omega GST {Human (Homo sapiens) [TaxId: 9606 85.77
d1jlwa1127 Class delta GST {Mosquito (Anopheles dirus b), iso 85.61
d1tw9a1129 Class sigma GST {Heligmosomoides polygyrus [TaxId: 83.92
d1okta1126 Pf GST {Malarial parasite (Plasmodium falciparum) 82.38
d1e6ba1133 Class zeta GST {Mouse-ear cress (Arabidopsis thali 81.56
d2fhea1136 Class alpha GST {Fasciola hepatica [TaxId: 6192]} 81.31
d1gula1140 Class alpha GST {Human (Homo sapiens), (a1-1) [Tax 80.48
d1tu7a1131 Class pi GST {Onchocerca volvulus [TaxId: 6282]} 80.21
>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF1-gamma domain
family: eEF1-gamma domain
domain: Elongation factor 1-gamma C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-85  Score=551.05  Aligned_cols=158  Identities=36%  Similarity=0.728  Sum_probs=153.7

Q ss_pred             CCCCCCCCCCCCcchhhhhhhhccCCCccchhhhhhhhhccCCCCceEEEEeeecCCCcceeEEeccchhhHhhhhHHhh
Q 025195           96 PKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLAR  175 (256)
Q Consensus        96 ~k~Pl~~Lp~s~f~ld~wKr~YSN~dt~~~~~alp~Fwe~fd~egySlW~~~Yky~~El~~~Fms~Nli~Gf~QRle~~r  175 (256)
                      +|||||+||||+|+||+|||+|||+||  +++||||||||||+||||||+|+||||+||+++|||||||||||||||++|
T Consensus         1 aK~Pld~Lp~s~f~lD~wKR~YSN~dt--~~~a~p~Fwe~fD~egySiw~~~Yky~~el~~~fmt~Nli~Gf~QRle~~r   78 (162)
T d1pbua_           1 AKDPFAHLPKSTFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLR   78 (162)
T ss_dssp             CCCGGGSSCCCCSCHHHHHHHHHHSCG--GGTHHHHHHSSCCTTTCEEEEECCSCGGGCCCSTTHHHHHHHHHHHGGGTG
T ss_pred             CcChHHHCCCCCCCHHHHHHhhccCCc--HHHHHHHHHHhCCcccceEEEEEEecCccCccEEEEecchhHHHHHHHHHh
Confidence            589999999999999999999999999  899999999999999999999999999999999999999999999999999


Q ss_pred             hhcceeEEEEeeCCCcceEEEEEEeCCCCCcccc--ccccCccceeeEEcCCCCHHHHHHHHHHHccCCCC--CCeeecc
Q 025195          176 KYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVM--DECYDMELYDWKKADISDEEQKERVNQMIEDHEPF--EGEALLD  251 (256)
Q Consensus       176 K~aFg~~~v~Ge~~~~~I~Gvw~~RGq~~p~~~~--~~~~d~esy~~~KLD~~~~edk~~v~~y~~w~~~~--~g~~~~~  251 (256)
                      |||||+|+|||++++++|+||||||||++|+ ++  +++||||||+|+|||++++|||++|++||||++++  +||+++|
T Consensus        79 KyaFg~~~v~Ge~~~~~I~G~wv~RG~~~~~-~~~~d~~~D~Esy~~~KLD~~~~edk~~v~dy~~we~~~~~~gk~~~d  157 (162)
T d1pbua_          79 KNAFASVILFGTNNSSSISGVWVFRGQELAF-PLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQ  157 (162)
T ss_dssp             GGEEECCEEESCSTTCEEEEEEEESSSSCSG-GGCGGGCSSGGGSCCEECCTTSSHHHHHHHHHHHSCSCCTTTCSCCCE
T ss_pred             hhheeeEEEEeecCCceeEEEEEEcCCCCCc-cccccccCCccceEEEEcCCCCHHHHHHHHHHHccCCCcccCCeEccc
Confidence            9999999999999999999999999999975 65  78999999999999999999999999999999985  4999999


Q ss_pred             ccccC
Q 025195          252 AKCFK  256 (256)
Q Consensus       252 gkvfK  256 (256)
                      |||||
T Consensus       158 gkvfK  162 (162)
T d1pbua_         158 GKIFK  162 (162)
T ss_dssp             ECCCC
T ss_pred             ccccC
Confidence            99998
>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} Back     information, alignment and structure
>d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} Back     information, alignment and structure
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} Back     information, alignment and structure
>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]} Back     information, alignment and structure
>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} Back     information, alignment and structure
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} Back     information, alignment and structure
>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Back     information, alignment and structure
>d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} Back     information, alignment and structure
>d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} Back     information, alignment and structure
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} Back     information, alignment and structure
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} Back     information, alignment and structure
>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} Back     information, alignment and structure
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]} Back     information, alignment and structure
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} Back     information, alignment and structure
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]} Back     information, alignment and structure
>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Back     information, alignment and structure
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]} Back     information, alignment and structure