BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025196
         (256 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PBU|A Chain A, Solution Structure Of The C-Terminal Domain Of The Human
           Eef1bgamma Subunit
          Length = 162

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 5/154 (3%)

Query: 106 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVS 165
           S   LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++
Sbjct: 11  STFALDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLIT 68

Query: 166 GFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKAD 224
           G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D
Sbjct: 69  GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLD 128

Query: 225 ISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 256
              EE +  V +       F+  G+A    K FK
Sbjct: 129 PGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 162


>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
           Purine-Specific Nucleoside Hydrolase
 pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
           Purine-Specific Nucleoside Hydrolase
 pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
           Purine-Specific Nucleoside Hydrolase
 pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
           Purine-Specific Nucleoside Hydrolase
          Length = 306

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 186 GNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADIS 226
           GN  P      W+   PE  K V+D  +D+ +  W+ A+IS
Sbjct: 154 GNTTPIAEFNFWV--DPEAAKIVLDAGFDITIVPWEVAEIS 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,567,140
Number of Sequences: 62578
Number of extensions: 243959
Number of successful extensions: 583
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)