Query 025196
Match_columns 256
No_of_seqs 154 out of 405
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1627 Translation elongation 100.0 3.2E-76 6.9E-81 491.8 9.2 156 98-256 1-160 (160)
2 PF00647 EF1G: Elongation fact 100.0 9E-65 2E-69 405.4 4.7 107 95-203 1-107 (107)
3 cd03181 GST_C_EFB1gamma GST_C 96.7 0.001 2.2E-08 52.0 2.6 46 3-48 76-121 (123)
4 cd03204 GST_C_GDAP1 GST_C fami 91.4 0.11 2.3E-06 42.0 1.5 34 4-37 76-111 (111)
5 cd03187 GST_C_Phi GST_C family 91.3 0.15 3.3E-06 39.1 2.3 27 15-41 92-118 (118)
6 PF00043 GST_C: Glutathione S- 90.4 0.15 3.4E-06 37.7 1.6 31 4-35 65-95 (95)
7 cd03178 GST_C_Ure2p_like GST_C 90.4 0.16 3.6E-06 38.8 1.7 28 14-41 85-112 (113)
8 cd03207 GST_C_8 GST_C family, 90.2 0.15 3.3E-06 38.6 1.3 26 17-42 76-101 (103)
9 cd03188 GST_C_Beta GST_C famil 89.6 0.18 3.9E-06 38.4 1.4 24 18-41 91-114 (114)
10 cd03185 GST_C_Tau GST_C family 88.9 0.27 5.8E-06 38.4 2.0 27 18-44 90-116 (126)
11 cd03203 GST_C_Lambda GST_C fam 87.9 0.35 7.5E-06 38.4 2.0 30 14-43 82-111 (120)
12 cd03183 GST_C_Theta GST_C fami 87.5 0.34 7.4E-06 38.0 1.7 30 13-42 90-121 (126)
13 cd03196 GST_C_5 GST_C family, 87.1 0.33 7.2E-06 38.3 1.5 23 18-40 92-114 (115)
14 cd03210 GST_C_Pi GST_C family, 86.4 0.56 1.2E-05 37.3 2.4 34 15-48 84-117 (126)
15 cd03191 GST_C_Zeta GST_C famil 86.1 0.48 1E-05 36.9 1.9 25 18-42 94-118 (121)
16 cd03209 GST_C_Mu GST_C family, 85.4 0.57 1.2E-05 36.9 2.0 31 16-46 82-112 (121)
17 cd03190 GST_C_ECM4_like GST_C 80.7 1.1 2.4E-05 36.6 2.0 26 18-43 93-118 (142)
18 cd03177 GST_C_Delta_Epsilon GS 79.4 1.3 2.8E-05 34.4 1.9 24 18-41 87-110 (118)
19 cd03198 GST_C_CLIC GST_C famil 79.1 1.1 2.3E-05 37.4 1.4 25 18-42 99-123 (134)
20 cd03184 GST_C_Omega GST_C fami 76.7 1.6 3.4E-05 34.5 1.7 28 17-44 87-114 (124)
21 cd03206 GST_C_7 GST_C family, 73.9 2.1 4.6E-05 32.3 1.7 21 17-37 80-100 (100)
22 cd03201 GST_C_DHAR GST_C famil 73.8 3 6.5E-05 33.4 2.7 24 19-42 86-109 (121)
23 cd03208 GST_C_Alpha GST_C fami 69.4 3.1 6.7E-05 34.0 1.8 30 14-43 86-115 (137)
24 cd03180 GST_C_2 GST_C family, 67.4 3.5 7.5E-05 30.9 1.6 21 17-37 90-110 (110)
25 cd03186 GST_C_SspA GST_N famil 65.6 3.6 7.8E-05 31.2 1.4 22 19-40 85-106 (107)
26 KOG0867 Glutathione S-transfer 65.4 4.6 9.9E-05 35.9 2.2 27 14-40 180-206 (226)
27 PF13410 GST_C_2: Glutathione 64.1 2.5 5.3E-05 29.6 0.2 17 14-30 53-69 (69)
28 PLN02907 glutamate-tRNA ligase 63.2 2.8 6E-05 44.0 0.5 27 17-43 140-168 (722)
29 PF09868 DUF2095: Uncharacteri 56.1 5.9 0.00013 32.9 1.1 28 95-122 2-29 (128)
30 cd03200 GST_C_JTV1 GST_C famil 53.1 8.1 0.00018 29.6 1.5 17 18-34 80-96 (96)
31 cd03194 GST_C_3 GST_C family, 48.0 9.1 0.0002 30.0 1.0 20 22-41 93-112 (114)
32 cd03195 GST_C_4 GST_C family, 44.4 11 0.00025 29.4 1.1 20 22-41 92-111 (114)
33 KOG4420 Uncharacterized conser 44.1 12 0.00027 35.2 1.4 43 2-44 244-288 (325)
34 KOG0867 Glutathione S-transfer 42.2 4.4 9.5E-05 36.0 -1.8 47 5-52 126-174 (226)
35 PF13200 DUF4015: Putative gly 39.6 23 0.0005 33.7 2.5 71 139-215 136-220 (316)
36 PF14497 GST_C_3: Glutathione 33.5 23 0.0005 26.6 1.2 16 17-32 83-98 (99)
37 cd03193 GST_C_Metaxin GST_C fa 28.4 34 0.00073 25.0 1.3 14 18-31 74-87 (88)
38 PF11280 DUF3081: Protein of u 25.7 95 0.0021 23.9 3.4 35 136-174 34-78 (79)
39 KOG1668 Elongation factor 1 be 25.6 35 0.00076 31.3 1.2 30 10-39 40-69 (231)
40 KOG0406 Glutathione S-transfer 23.1 58 0.0012 29.8 2.1 26 19-44 187-212 (231)
No 1
>KOG1627 consensus Translation elongation factor EF-1 gamma [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-76 Score=491.79 Aligned_cols=156 Identities=51% Similarity=0.930 Sum_probs=150.9
Q ss_pred CCCCCCCCCCcchhhhhhhhccCCCccchhhhhhhhhccCCCCceEEEEeeecCCCcceeEEeccchhhHhhhhHHhhhh
Q 025196 98 NPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKY 177 (256)
Q Consensus 98 ~Pl~~Lp~s~f~ld~wKr~YSN~dt~~~~~alp~Fwe~fd~egySlW~~~Yky~~El~~~Fms~Nli~Gf~QRle~~rK~ 177 (256)
|||++||+|+|+||+|||+|||+|| +.+||||||||||+||||||+|+||||+||+++||||||||||||||+++|||
T Consensus 1 ~pl~~lp~~~Fvldd~kr~ySn~dt--~~~a~P~f~e~~d~e~ys~w~~~Yky~eeL~~~fms~nli~g~~qrl~~~rk~ 78 (160)
T KOG1627|consen 1 DPLDLLPKSTFVLDDWKRKYSNEDT--REVALPWFWEHFDPEGYSLWKVDYKYNEELTLTFMSCNLIGGFFQRLDKSRKY 78 (160)
T ss_pred CchhhCCCCccchhhhhhhhccccc--ccccchHHHHHhCcccceeeeccccCchHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 7999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeeCCCcceEEEEEEeCCCCCcccc--ccccCccceeeEEcCCCCHHHHHHHHHHHccCCCC--CCeeecccc
Q 025196 178 AFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVM--DECYDMELYDWKKADISDEEQKERVNQMIEDHEPF--EGEALLDAK 253 (256)
Q Consensus 178 aFg~~~v~Ge~~~~~I~Gvw~~RGq~~p~~~~--~~~~d~esy~~~KLD~~~~edk~~v~~y~~w~~~~--~g~~~~~gk 253 (256)
+||||+|+|+|++++|+|+|+||||++ +|.| |++||||||+||||||+++|+|++|++||+|++++ .||.++|||
T Consensus 79 ~f~~~~~~g~~~~~~i~g~~~~rg~el-a~~~spDwq~D~EsY~~tKLD~~see~k~~V~ey~sWeg~f~~~Gkaf~qgK 157 (160)
T KOG1627|consen 79 AFGSMVLFGENGNSTISGAWVFRGQEL-APAFSPDWQPDYESYTWTKLDPGSEETKELVNEYFSWEGPFEGNGKAFNDGK 157 (160)
T ss_pred hheeEEEeccCCCCcceEEEEEecccc-ccccCccccccccceeeeecCCCCHHHHHHHHHHHhhcccccccchhhhccc
Confidence 999999999999999999999999997 3466 89999999999999999999999999999999975 569999999
Q ss_pred ccC
Q 025196 254 CFK 256 (256)
Q Consensus 254 vfK 256 (256)
|||
T Consensus 158 i~K 160 (160)
T KOG1627|consen 158 IFK 160 (160)
T ss_pred ccC
Confidence 998
No 2
>PF00647 EF1G: Elongation factor 1 gamma, conserved domain; InterPro: IPR001662 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents a conserved domain usually found near the C terminus of EF1B-gamma chains, a peptide of 410-440 residues. The gamma chain appears to play a role in anchoring the EF1B complex to the beta and delta chains and to other cellular components. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 1PBU_A.
Probab=100.00 E-value=9e-65 Score=405.37 Aligned_cols=107 Identities=59% Similarity=1.183 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhccCCCccchhhhhhhhhccCCCCceEEEEeeecCCCcceeEEeccchhhHhhhhHHh
Q 025196 95 KPKNPLDLLPPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLA 174 (256)
Q Consensus 95 K~k~Pl~~Lp~s~f~ld~wKr~YSN~dt~~~~~alp~Fwe~fd~egySlW~~~Yky~~El~~~Fms~Nli~Gf~QRle~~ 174 (256)
|+|||||+||||+|+||+|||.|||+|| +++||||||||||+||||||+|+|+||+|||++|||||||||||||||++
T Consensus 1 K~k~Pl~~lp~s~f~lD~wKr~YSN~d~--~~~a~p~Fwe~~d~eg~Slw~~~Yky~~El~~~fmt~Nli~Gf~QRle~~ 78 (107)
T PF00647_consen 1 KPKNPLDLLPKSTFVLDEWKRKYSNEDT--RTVAMPWFWENFDPEGYSLWFCDYKYNDELTMTFMTCNLIGGFFQRLEKL 78 (107)
T ss_dssp ----GGGSS----S-HHHHHHHHHHS-G--GGTHHHHHHSS--TTT-EEEEE--S-GGG---STTHHHHHHHHHHHGGGT
T ss_pred CCCChHHHCCCCCCCHHHhhhhhcCCCc--hhhHHHHHHHhCCccccEEEEEecCChhhhccceeehhHHHHHHHHHHHH
Confidence 6899999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeEEEEeeCCCcceEEEEEEeCCC
Q 025196 175 RKYAFGKMLIIGNEPPYKVKGLWLFRGPE 203 (256)
Q Consensus 175 rK~aFg~~~v~Ge~~~~~I~Gvw~~RGq~ 203 (256)
||||||+|+|||++++++|+|||||||||
T Consensus 79 rK~aFg~~~v~G~~~~~~I~Gvwv~rG~e 107 (107)
T PF00647_consen 79 RKYAFGSMSVFGEDNNSDISGVWVFRGQE 107 (107)
T ss_dssp GGGEEE--EEES-STT-EEEEEEEESSSS
T ss_pred hhhheeEEEEEecCCCCceEEEEEEecCC
Confidence 99999999999999999999999999997
No 3
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=96.75 E-value=0.001 Score=52.02 Aligned_cols=46 Identities=37% Similarity=0.707 Sum_probs=39.6
Q ss_pred cchhhHHHHhCChhhhhcCCchHHHHHHHhhCcchhhhcCCccccc
Q 025196 3 CNLYYGFKLIMTKSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAE 48 (256)
Q Consensus 3 ~~L~~~f~~vld~e~Rk~~Pnv~RWf~TVinqP~fk~v~g~~kl~e 48 (256)
+.+.++....++..++..+|++.+|+.+|.++|.|+.++...++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 121 (123)
T cd03181 76 GALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVKLCE 121 (123)
T ss_pred HHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCCcCC
Confidence 4455565566787778899999999999999999999999999998
No 4
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=91.36 E-value=0.11 Score=41.99 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=24.1
Q ss_pred chhhHHHHhCChhh--hhcCCchHHHHHHHhhCcch
Q 025196 4 NLYYGFKLIMTKSF--TSEFPHVERYFWTVANQPKI 37 (256)
Q Consensus 4 ~L~~~f~~vld~e~--Rk~~Pnv~RWf~TVinqP~f 37 (256)
.+.++...-++..+ +.+||||.||+.+|.+.|.|
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aRpsf 111 (111)
T cd03204 76 TLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCccccccccccChHHHHHHHHHHcCCCC
Confidence 34444433345443 57899999999999999865
No 5
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=91.25 E-value=0.15 Score=39.12 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.2
Q ss_pred hhhhhcCCchHHHHHHHhhCcchhhhc
Q 025196 15 KSFTSEFPHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 15 ~e~Rk~~Pnv~RWf~TVinqP~fk~v~ 41 (256)
...+..||++.||+++|.+.|.++.++
T Consensus 92 ~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 92 AKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred hhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 445788999999999999999998753
No 6
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=90.42 E-value=0.15 Score=37.71 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=22.0
Q ss_pred chhhHHHHhCChhhhhcCCchHHHHHHHhhCc
Q 025196 4 NLYYGFKLIMTKSFTSEFPHVERYFWTVANQP 35 (256)
Q Consensus 4 ~L~~~f~~vld~e~Rk~~Pnv~RWf~TVinqP 35 (256)
.+.++...-.+.. ++.||+|.+|+++|.++|
T Consensus 65 ~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 65 MLDWLERLGPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHTTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHhCCCcc-cccCHHHHHHHHHHHcCC
Confidence 3344444433333 689999999999999987
No 7
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=90.37 E-value=0.16 Score=38.79 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=23.8
Q ss_pred ChhhhhcCCchHHHHHHHhhCcchhhhc
Q 025196 14 TKSFTSEFPHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 14 d~e~Rk~~Pnv~RWf~TVinqP~fk~v~ 41 (256)
+..++..||++.+|+.+|.++|.++.++
T Consensus 85 ~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 85 GIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred cccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 3335788999999999999999999864
No 8
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=90.17 E-value=0.15 Score=38.62 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=23.0
Q ss_pred hhhcCCchHHHHHHHhhCcchhhhcC
Q 025196 17 FTSEFPHVERYFWTVANQPKIKKFLG 42 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVinqP~fk~v~g 42 (256)
++..+|++.||+.+|.+.|.++.+..
T Consensus 76 ~~~~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 76 LLPERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred CCCCChHHHHHHHHHHcCHHHHHHhc
Confidence 46789999999999999999988753
No 9
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=89.65 E-value=0.18 Score=38.37 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.2
Q ss_pred hhcCCchHHHHHHHhhCcchhhhc
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~ 41 (256)
...||+|.+|+.+|.++|.++.++
T Consensus 91 ~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 91 LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred hhhChHHHHHHHHHHhCHHhHhhC
Confidence 357999999999999999998863
No 10
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=88.95 E-value=0.27 Score=38.36 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=24.4
Q ss_pred hhcCCchHHHHHHHhhCcchhhhcCCc
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFLGDF 44 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~g~~ 44 (256)
++.||++.+|+.+|.++|.++.+....
T Consensus 90 ~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 90 EEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred cccCchHHHHHHHHHhccHHHHhCCCH
Confidence 678999999999999999999987764
No 11
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=87.95 E-value=0.35 Score=38.42 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=25.0
Q ss_pred ChhhhhcCCchHHHHHHHhhCcchhhhcCC
Q 025196 14 TKSFTSEFPHVERYFWTVANQPKIKKFLGD 43 (256)
Q Consensus 14 d~e~Rk~~Pnv~RWf~TVinqP~fk~v~g~ 43 (256)
+-.+...||+|.+|+.+|.+.|.++.+..+
T Consensus 82 ~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 82 NYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred CccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 334457899999999999999999998664
No 12
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=87.52 E-value=0.34 Score=38.01 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=24.7
Q ss_pred CChhhhhcCCchHHHHHHHhh--CcchhhhcC
Q 025196 13 MTKSFTSEFPHVERYFWTVAN--QPKIKKFLG 42 (256)
Q Consensus 13 ld~e~Rk~~Pnv~RWf~TVin--qP~fk~v~g 42 (256)
.+.+..+.||+|.+|+.+|.+ +|.++.+.+
T Consensus 90 ~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~~ 121 (126)
T cd03183 90 AGYDVFEGRPKLAAWRKRVKEAGNPLFDEAHK 121 (126)
T ss_pred cCCcccccCchHHHHHHHHHHhcchhHHHHHH
Confidence 344456889999999999999 999988654
No 13
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=87.12 E-value=0.33 Score=38.30 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.1
Q ss_pred hhcCCchHHHHHHHhhCcchhhh
Q 025196 18 TSEFPHVERYFWTVANQPKIKKF 40 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v 40 (256)
+..||++.||+.+|.+.|.++++
T Consensus 92 ~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 92 QSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred cccCHHHHHHHHHHHcChHHHhh
Confidence 47899999999999999999875
No 14
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=86.38 E-value=0.56 Score=37.33 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.9
Q ss_pred hhhhhcCCchHHHHHHHhhCcchhhhcCCccccc
Q 025196 15 KSFTSEFPHVERYFWTVANQPKIKKFLGDFKQAE 48 (256)
Q Consensus 15 ~e~Rk~~Pnv~RWf~TVinqP~fk~v~g~~kl~e 48 (256)
......||+|.+|+++|.+.|.++.++..-..+.
T Consensus 84 ~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~~~ 117 (126)
T cd03210 84 PGCLDAFPLLKAFVERLSARPKLKAYLESDAFKN 117 (126)
T ss_pred hHhhhcChHHHHHHHHHHhCcHHHHHHhCcCCCC
Confidence 3446789999999999999999999886654444
No 15
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=86.15 E-value=0.48 Score=36.86 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.4
Q ss_pred hhcCCchHHHHHHHhhCcchhhhcC
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFLG 42 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~g 42 (256)
...||+|.+|+.+|.++|.|+.+..
T Consensus 94 ~~~~p~l~~w~~~~~~~p~~~~~~~ 118 (121)
T cd03191 94 LSPYPTIARINEACLELPAFQAAHP 118 (121)
T ss_pred cccCcHHHHHHHHHHhChhHHHhCc
Confidence 3789999999999999999998754
No 16
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=85.39 E-value=0.57 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=25.5
Q ss_pred hhhhcCCchHHHHHHHhhCcchhhhcCCccc
Q 025196 16 SFTSEFPHVERYFWTVANQPKIKKFLGDFKQ 46 (256)
Q Consensus 16 e~Rk~~Pnv~RWf~TVinqP~fk~v~g~~kl 46 (256)
.....||+|.+|+.+|.+.|.+++++..=..
T Consensus 82 ~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 82 DCLDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred cccccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 3356899999999999999999998755433
No 17
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=80.69 E-value=1.1 Score=36.64 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=23.6
Q ss_pred hhcCCchHHHHHHHhhCcchhhhcCC
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFLGD 43 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~g~ 43 (256)
...||+|.+|+.+|.++|.+++++..
T Consensus 93 ~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 93 IRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred hhhCchHHHHHHHHhcCchHhhhcCH
Confidence 45899999999999999999998775
No 18
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=79.42 E-value=1.3 Score=34.40 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.2
Q ss_pred hhcCCchHHHHHHHhhCcchhhhc
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~ 41 (256)
...||++.+|+.+|.+.|.|++..
T Consensus 87 ~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 87 LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred hhhCchHHHHHHHHHcccchHHHH
Confidence 457999999999999999999753
No 19
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=79.06 E-value=1.1 Score=37.42 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.3
Q ss_pred hhcCCchHHHHHHHhhCcchhhhcC
Q 025196 18 TSEFPHVERYFWTVANQPKIKKFLG 42 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinqP~fk~v~g 42 (256)
...||||.||+.+|.+.|.|+.+..
T Consensus 99 ~~~~P~L~aw~~ri~aRPsfk~t~~ 123 (134)
T cd03198 99 PADLTGLWRYLKNAYQREEFTNTCP 123 (134)
T ss_pred cccCHHHHHHHHHHHCCHHHHHHcC
Confidence 3689999999999999999998754
No 20
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=76.72 E-value=1.6 Score=34.49 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=25.0
Q ss_pred hhhcCCchHHHHHHHhhCcchhhhcCCc
Q 025196 17 FTSEFPHVERYFWTVANQPKIKKFLGDF 44 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVinqP~fk~v~g~~ 44 (256)
.++.||++.+|+.+|.++|.++.++.+.
T Consensus 87 ~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 87 PLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred CcccChHHHHHHHHhccChHHHHHhCCH
Confidence 3678999999999999999999998764
No 21
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=73.93 E-value=2.1 Score=32.26 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=18.6
Q ss_pred hhhcCCchHHHHHHHhhCcch
Q 025196 17 FTSEFPHVERYFWTVANQPKI 37 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVinqP~f 37 (256)
.+..||++.+|+++|.++|.|
T Consensus 80 ~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 80 DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred ChhhCcHHHHHHHHHHhCcCC
Confidence 367899999999999999975
No 22
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=73.81 E-value=3 Score=33.39 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred hcCCchHHHHHHHhhCcchhhhcC
Q 025196 19 SEFPHVERYFWTVANQPKIKKFLG 42 (256)
Q Consensus 19 k~~Pnv~RWf~TVinqP~fk~v~g 42 (256)
..||+|.||+.+|.+.|.|+.++.
T Consensus 86 ~~~P~l~~w~~rl~~rps~~~t~~ 109 (121)
T cd03201 86 ESLTSVKSYMKALFSRESFVKTKA 109 (121)
T ss_pred ccchHHHHHHHHHHCCchhhhcCC
Confidence 789999999999999999998765
No 23
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=69.42 E-value=3.1 Score=33.95 Aligned_cols=30 Identities=37% Similarity=0.608 Sum_probs=25.4
Q ss_pred ChhhhhcCCchHHHHHHHhhCcchhhhcCC
Q 025196 14 TKSFTSEFPHVERYFWTVANQPKIKKFLGD 43 (256)
Q Consensus 14 d~e~Rk~~Pnv~RWf~TVinqP~fk~v~g~ 43 (256)
.......||+|.+|+.+|.++|.+++++..
T Consensus 86 ~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~ 115 (137)
T cd03208 86 DPSLLSDFPLLQAFKTRISNLPTIKKFLQP 115 (137)
T ss_pred chhhhccChHHHHHHHHHHcCHHHHHHHhc
Confidence 344456899999999999999999998765
No 24
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=67.39 E-value=3.5 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=18.9
Q ss_pred hhhcCCchHHHHHHHhhCcch
Q 025196 17 FTSEFPHVERYFWTVANQPKI 37 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVinqP~f 37 (256)
.+..||+|.+|+.+|.++|.|
T Consensus 90 ~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 90 ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred ccccCchHHHHHHHHHhCCCC
Confidence 478899999999999999875
No 25
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=65.58 E-value=3.6 Score=31.16 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.1
Q ss_pred hcCCchHHHHHHHhhCcchhhh
Q 025196 19 SEFPHVERYFWTVANQPKIKKF 40 (256)
Q Consensus 19 k~~Pnv~RWf~TVinqP~fk~v 40 (256)
..+|++.+|+.+|...|.++.+
T Consensus 85 ~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 85 KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred ccchHHHHHHHHHHCCHHHHHh
Confidence 4799999999999999999875
No 26
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.38 E-value=4.6 Score=35.90 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.6
Q ss_pred ChhhhhcCCchHHHHHHHhhCcchhhh
Q 025196 14 TKSFTSEFPHVERYFWTVANQPKIKKF 40 (256)
Q Consensus 14 d~e~Rk~~Pnv~RWf~TVinqP~fk~v 40 (256)
+...+++||++.||++++...|..+++
T Consensus 180 ~~~~~~~~p~v~~W~~~~~~~P~~~e~ 206 (226)
T KOG0867|consen 180 TEKDFEKYPKVARWYERIQKRPAYEEA 206 (226)
T ss_pred hhhhhhhChHHHHHHHHHHhCccHHHH
Confidence 688999999999999999988876654
No 27
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=64.06 E-value=2.5 Score=29.63 Aligned_cols=17 Identities=6% Similarity=0.360 Sum_probs=14.1
Q ss_pred ChhhhhcCCchHHHHHH
Q 025196 14 TKSFTSEFPHVERYFWT 30 (256)
Q Consensus 14 d~e~Rk~~Pnv~RWf~T 30 (256)
+...++.||+|.+|+++
T Consensus 53 ~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 53 DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp TCCHHTTSHHHHHHHHH
T ss_pred CcCccccCHHHHHHHhC
Confidence 44678999999999974
No 28
>PLN02907 glutamate-tRNA ligase
Probab=63.18 E-value=2.8 Score=44.02 Aligned_cols=27 Identities=7% Similarity=0.318 Sum_probs=21.6
Q ss_pred hhhcCCchHHHHHHHhhCcc--hhhhcCC
Q 025196 17 FTSEFPHVERYFWTVANQPK--IKKFLGD 43 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVinqP~--fk~v~g~ 43 (256)
.+..||||.|||++|.++|. |..+...
T Consensus 140 ~~~~yPnL~RW~erI~arPs~~~~~~~~a 168 (722)
T PLN02907 140 KSKKYQNLVRWFNSISAEYSDILNEVTAA 168 (722)
T ss_pred ccccCHHHHHHHHHHHhCCCcchhhHHHH
Confidence 46789999999999999999 4444433
No 29
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=56.08 E-value=5.9 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhccCCC
Q 025196 95 KPKNPLDLLPPSKMILDDWKRLYSNTKS 122 (256)
Q Consensus 95 K~k~Pl~~Lp~s~f~ld~wKr~YSN~dt 122 (256)
|.|.|.|.+|=-..++++||++|-+.--
T Consensus 2 ~kk~p~d~~~wqeyd~eEFkkkfP~Lak 29 (128)
T PF09868_consen 2 KKKKPIDEFPWQEYDIEEFKKKFPALAK 29 (128)
T ss_pred CCcCcccccchhHhhHHHHHHHhHHHHH
Confidence 5688999999999999999999987543
No 30
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=53.11 E-value=8.1 Score=29.60 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.8
Q ss_pred hhcCCchHHHHHHHhhC
Q 025196 18 TSEFPHVERYFWTVANQ 34 (256)
Q Consensus 18 Rk~~Pnv~RWf~TVinq 34 (256)
...||||.||+.+|.+|
T Consensus 80 ~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 80 SAAPANVQRWLKSCENL 96 (96)
T ss_pred cccChHHHHHHHHHHhC
Confidence 35799999999999876
No 31
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=48.00 E-value=9.1 Score=30.03 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=18.5
Q ss_pred CchHHHHHHHhhCcchhhhc
Q 025196 22 PHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 22 Pnv~RWf~TVinqP~fk~v~ 41 (256)
|++.+|+++|.+.|.+++.+
T Consensus 93 P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 93 PAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred HHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999998754
No 32
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=44.37 E-value=11 Score=29.36 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=18.8
Q ss_pred CchHHHHHHHhhCcchhhhc
Q 025196 22 PHVERYFWTVANQPKIKKFL 41 (256)
Q Consensus 22 Pnv~RWf~TVinqP~fk~v~ 41 (256)
|++.+|+.+|.+.|.|+.++
T Consensus 92 p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 92 ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred HHHHHHHHHHHCCHHHHHHH
Confidence 89999999999999999875
No 33
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=44.05 E-value=12 Score=35.21 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.5
Q ss_pred ccchhhHHHHhCChhhhh--cCCchHHHHHHHhhCcchhhhcCCc
Q 025196 2 ICNLYYGFKLIMTKSFTS--EFPHVERYFWTVANQPKIKKFLGDF 44 (256)
Q Consensus 2 a~~L~~~f~~vld~e~Rk--~~Pnv~RWf~TVinqP~fk~v~g~~ 44 (256)
+.+|.+.+..-|..++-. +-|||..+|.+|...+.|+.|+|++
T Consensus 244 g~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrrR~sf~kvlg~~ 288 (325)
T KOG4420|consen 244 GATLHRLKFLGLEKKYWEDGSRPNLESYFERVRRRFSFRKVLGDI 288 (325)
T ss_pred HHHHHHHHHcccHHHhcccCCCccHHHHHHHHHhhhHHHHhhhhH
Confidence 346677777778888888 8999999999999999999999986
No 34
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=4.4 Score=36.02 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=39.5
Q ss_pred hhhHHHHhCChhhhhcCCchHHHHHH-HhhCcchhhhcCCccccc-ccCC
Q 025196 5 LYYGFKLIMTKSFTSEFPHVERYFWT-VANQPKIKKFLGDFKQAE-SVPA 52 (256)
Q Consensus 5 L~~~f~~vld~e~Rk~~Pnv~RWf~T-VinqP~fk~v~g~~kl~e-~~~f 52 (256)
+...+......++|..+++++|||.+ +..++ .+..++|+.++. ...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g-~~~tlADl~~~~~~~~~ 174 (226)
T KOG0867|consen 126 LNPTAVKELEAKLRKALDNLERFLKTQVYLAG-DQLTLADLSLASTLSQF 174 (226)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHccCCcccC-CcccHHHHHHhhHHHHH
Confidence 34556677788999999999999999 99999 999999999998 4333
No 35
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=39.64 E-value=23 Score=33.70 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCceEEEEee-ecCCCcce---eEE-------eccchhhHhhhhH-Hhhh-hcceeEEEEeeCCCc-ceEEEEEEeCCCC
Q 025196 139 EGYSLWFCDY-KYNDENTV---SFV-------TLNKVSGFLQRMD-LARK-YAFGKMLIIGNEPPY-KVKGLWLFRGPEI 204 (256)
Q Consensus 139 egySlW~~~Y-ky~~El~~---~Fm-------s~Nli~Gf~QRle-~~rK-~aFg~~~v~Ge~~~~-~I~Gvw~~RGq~~ 204 (256)
-|+-==..|| +||++... .|- -.+.|.+|+++.. .+++ .++-|+.|||-.-.+ +-.| =||++
T Consensus 136 ~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~----iGQ~~ 211 (316)
T PF13200_consen 136 LGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMG----IGQDF 211 (316)
T ss_pred cCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCC----cCCCH
Confidence 3666667789 99994322 221 2367999999988 4554 589999999965322 2222 38998
Q ss_pred CccccccccCc
Q 025196 205 PKFVMDECYDM 215 (256)
Q Consensus 205 p~~~~~~~~d~ 215 (256)
. .+..++|+
T Consensus 212 -~-~~a~~vD~ 220 (316)
T PF13200_consen 212 -E-KIAEYVDY 220 (316)
T ss_pred -H-HHhhhCCE
Confidence 4 56555554
No 36
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=33.47 E-value=23 Score=26.57 Aligned_cols=16 Identities=19% Similarity=0.754 Sum_probs=13.4
Q ss_pred hhhcCCchHHHHHHHh
Q 025196 17 FTSEFPHVERYFWTVA 32 (256)
Q Consensus 17 ~Rk~~Pnv~RWf~TVi 32 (256)
+.+.||||.||+++|-
T Consensus 83 ~~~~~p~L~~w~~ri~ 98 (99)
T PF14497_consen 83 FPKDYPNLVRWYERIE 98 (99)
T ss_dssp HTTTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhhc
Confidence 3468999999999985
No 37
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=28.37 E-value=34 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=12.0
Q ss_pred hhcCCchHHHHHHH
Q 025196 18 TSEFPHVERYFWTV 31 (256)
Q Consensus 18 Rk~~Pnv~RWf~TV 31 (256)
...||++.+|+.+|
T Consensus 74 ~~~~p~l~~~~~r~ 87 (88)
T cd03193 74 LKEYPNLVEYCERI 87 (88)
T ss_pred HHhCcHHHHHHHHh
Confidence 45799999999886
No 38
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.74 E-value=95 Score=23.88 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=25.6
Q ss_pred cCCCCceEEEEeeecCCCcceeEEecc----------chhhHhhhhHHh
Q 025196 136 YDPEGYSLWFCDYKYNDENTVSFVTLN----------KVSGFLQRMDLA 174 (256)
Q Consensus 136 fd~egySlW~~~Yky~~El~~~Fms~N----------li~Gf~QRle~~ 174 (256)
.|.+||.+|.. -...|+++|.=| +..-|++||.++
T Consensus 34 ~D~DGYtv~L~----~~~VtLtl~FHnty~~dy~~~~~~~~F~kkl~~i 78 (79)
T PF11280_consen 34 SDFDGYTVYLE----DNGVTLTLGFHNTYHLDYDQEHNYDSFLKKLKAI 78 (79)
T ss_pred ecCCCcEEEEe----CCCEEEEEEeccceecCCCCHHHHHHHHHHHHcc
Confidence 58999999984 356788888765 366777777653
No 39
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=25.56 E-value=35 Score=31.28 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=21.7
Q ss_pred HHhCChhhhhcCCchHHHHHHHhhCcchhh
Q 025196 10 KLIMTKSFTSEFPHVERYFWTVANQPKIKK 39 (256)
Q Consensus 10 ~~vld~e~Rk~~Pnv~RWf~TVinqP~fk~ 39 (256)
..+..+.-+..++|..|||..|-.+-....
T Consensus 40 ~al~~ep~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 40 AALGVEPQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhcccCcchhhhhHHHHHHHHHHHHHHHHh
Confidence 334445557889999999998887766553
No 40
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=58 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.2
Q ss_pred hcCCchHHHHHHHhhCcchhhhcCCc
Q 025196 19 SEFPHVERYFWTVANQPKIKKFLGDF 44 (256)
Q Consensus 19 k~~Pnv~RWf~TVinqP~fk~v~g~~ 44 (256)
..+|.+++|.+.+.++|.++++.-+.
T Consensus 187 ~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 187 EETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred CCCccHHHHHHHHhcChhHHhhcCCH
Confidence 46999999999999999999987664
Done!