BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025197
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 131/230 (56%), Gaps = 6/230 (2%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDK--ISKATTTSPSDXXXXXXXXXXXXXXXXXSSIN 78
RA +AEF++ ++F+F GS L S TT + D S +
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 79 TSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGM--RPVGFY-V 135
SG H+NPAVT G LL +ISV+RAI Y IAQ +GAIVA +L T+ + +G +
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 136 ASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDG 195
A GV G GL +EI+ T LV V AT D +R LG GPLAIGF V L+ + G
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190
Query: 196 ASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPI 245
+NPAR+FG +++ +++HWI+WVGPF+GA LA LIY++I+ P +
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDL 240
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 122/228 (53%), Gaps = 4/228 (1%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RA +AEF++T +FVF GS L T+ D S + S
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---YVAS 137
G H+NPAVT G LL +IS+ RA+ Y IAQ +GAIVA +L T+ + +A
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLAD 131
Query: 138 GVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGAS 197
GV G GL +EI+ T LV V AT D +R LG PLAIG V L+ + G
Sbjct: 132 GVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCG 190
Query: 198 MNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPI 245
+NPAR+FG A++ + NHWI+WVGPF+G LA LIY++I+ P +
Sbjct: 191 INPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSDL 238
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
+A AEF++ LIFV GS + + P D + S
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 109
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVG 140
GGH+NPAVT + +IS+ ++++Y AQ LGAI+ A +L T G V + G
Sbjct: 110 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 169
Query: 141 E---GHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGAS 197
GHGL++E+++TF LV+T++A+ D + G V LAIGF V L + GAS
Sbjct: 170 NLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYTGAS 228
Query: 198 MNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
MNPAR+FGPA++ W NHWIYWVGP +GA LA +YEY+ P
Sbjct: 229 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 271
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
+A AEF++ LIFV GS + + P D + S
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVG 140
GGH+NPAVT + +IS+ ++++Y AQ LGAI+ A +L T G V + G
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 130
Query: 141 E---GHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGAS 197
GHGL++E+++TF LV+T++A+ D + G V LAIGF V L + GAS
Sbjct: 131 NLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYTGAS 189
Query: 198 MNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
MNPAR+FGPA++ W NHWIYWVGP +GA LA +YEY+ P
Sbjct: 190 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
+A AEF++ LIFV GS + + P D + S
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVG 140
GGH+NPAVT + +IS+ ++++Y AQ LGAI+ A +L T G V + G
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 130
Query: 141 E---GHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGAS 197
GHGL++E+++TF LV+T++A+ D KR + LAIGF V L + GAS
Sbjct: 131 NLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSVALAIGFSVAIGHLFAINYTGAS 189
Query: 198 MNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
MNPAR+FGPA++ W NHWIYWVGP +GA LA +YEY+ P
Sbjct: 190 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 7/223 (3%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
+A AEF++ LIFV GS + K P D + S
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPL---PVDMVLISLCFGLSIATMVQCFGHIS 61
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFAT--NGMRPVGFYVASG 138
GGH+NPAVT + +IS+ ++++Y AQ LGAI+ A +L T + + +G + G
Sbjct: 62 GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHG 121
Query: 139 -VGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGAS 197
+ GHGL++E+++TF LV+T++A+ D KR + LAIGF V L + GAS
Sbjct: 122 NLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGAS 180
Query: 198 MNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
MNPAR+FGPA++ W NHWIYWVGP +GA LA +YEY+ P
Sbjct: 181 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 25/230 (10%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RA AEF +TL +VF G G+ S P + + S
Sbjct: 11 RAIFAEFFATLFYVFFGLGA-------SLRWAPGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL----------RFATNGMRP 130
G HVNPAVTF L+G ++S++RAI Y +AQLLGA+ A +L A N + P
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 131 VGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVG 190
GV G ++EI +T V ++AT + + G LG V LA+GF + L G
Sbjct: 124 -------GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 175
Query: 191 GPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
+ GA MNPAR+F PA++ + NHW+YWVGP +GAGL +L+Y++++ P
Sbjct: 176 MYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 25/230 (10%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RA AEF +TL +VF G G+ S P + + S
Sbjct: 7 RAIFAEFFATLFYVFFGLGA-------SLRWAPGPLHVLQVALAFGLALATLVQAVGHIS 59
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL----------RFATNGMRP 130
G HVNPAVTF L+G ++S++RAI Y +AQLLGA+ A +L A N + P
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 119
Query: 131 VGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVG 190
GV G ++EI +T V ++AT + + G LG V LA+GF + L G
Sbjct: 120 -------GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 171
Query: 191 GPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
+ GA MNPAR+F PA++ + NHW+YWVGP +GAGL +L+Y++++ P
Sbjct: 172 MYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 221
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 25/230 (10%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RA AEF ++L +VF G G+ S P + + S
Sbjct: 11 RAICAEFFASLFYVFFGLGA-------SLRWAPGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL----------RFATNGMRP 130
G HVNPAVTF L+G ++S++RAI Y +AQLLGA+ A +L A N + P
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 131 VGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVG 190
GV G ++EI +T V ++AT + + G LG V LA+GF + L G
Sbjct: 124 -------GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 175
Query: 191 GPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
+ GA MNPAR+F PA++ + NHW+YWVGP +GAGL +L+Y++++ P
Sbjct: 176 MYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 25/230 (10%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RA AEF +TL +VF G G+ S P + + S
Sbjct: 5 RAIFAEFFATLFYVFFGLGA-------SLRWAPGPLHVLQVALAFGLALATLVQAVGHIS 57
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL----------RFATNGMRP 130
G HVNPAVTF L+G ++S++RAI Y +AQLLGA+ A +L A N + P
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 117
Query: 131 VGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVG 190
GV G ++EI +T V ++AT + + G LG V LA+GF + L G
Sbjct: 118 -------GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 169
Query: 191 GPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
+ GA MNPAR+F PA++ + NHW+YWVGP +GAGL +L+Y++++ P
Sbjct: 170 MYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 219
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RAA+AEF++TL+F++ +++ K + + S
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSK--ETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY------ 134
GGH+NPAVTFG L ++S++RA+ Y IAQ LGAI L++ G P +
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG--PYNQFGGGANS 154
Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGS----LGIVGPLAIGFIVGANILVG 190
VA G +G L EI+ TF LVYTV++ DPKR + + I+ PL IGF V L
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPILAPLPIGFAVFMVHLAT 213
Query: 191 GPFDGASMNPARAFGPALV---GWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
P G +NPAR+FG A++ W + WI+WVGPF+GA +AA ++Y++
Sbjct: 214 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 127/239 (53%), Gaps = 20/239 (8%)
Query: 12 DEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXX 71
E ++A AEF++TLIFVF G GS L K + P+
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSAL------KWPSALPTILQIALAFGLAIGTL 57
Query: 72 XXXSSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPV 131
SGGH+NPA+T L+G +IS++RA +Y AQL+GAI A +L G+ P+
Sbjct: 58 AQALG-PVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILY----GVAPL 112
Query: 132 G-------FYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVG 184
+ + +G +V+E+++TF L ++A+ D +R S L+IG V
Sbjct: 113 NARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAST-DSRRTSPVGSPALSIGLSVT 171
Query: 185 ANILVGGPFDGASMNPARAFGPALVGWRWR-NHWIYWVGPFLGAGLAALIYEYIVIPTE 242
LVG F G SMNPAR+FGPA+V R+ HW++WVGP +GA LAA++Y Y++ P
Sbjct: 172 LGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 230
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RAA+AEF++TL+F++ +++ K + + S
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSK--ETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY------ 134
GGH+NPAVTFG L ++S++RA+ Y IAQ LGAI L++ G P +
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG--PYNQFGGGANS 177
Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGS----LGIVGPLAIGFIVGANILVG 190
VA G +G L EI+ TF LVYTV++ DPKR + + I+ PL IGF V L
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPILAPLPIGFAVFMVHLAT 236
Query: 191 GPFDGASMNPARAFGPALV---GWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
P G +NPAR+FG A++ W + WI+WVGPF+GA +AA ++Y++
Sbjct: 237 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RAA+AEF++TL+F++ +++ K + + S
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSK--ETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY------ 134
GGH+NPAVTFG L ++S++RA+ Y IAQ LGAI L++ G P +
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG--PYNQFGGGANS 154
Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGS----LGIVGPLAIGFIVGANILVG 190
VA G +G L EI+ TF LVYTV++ DPKR + + I+ PL IGF V L
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPILAPLPIGFAVFMVHLAT 213
Query: 191 GPFDGASMNPARAFGPALV---GWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
P G +NPAR+FG A++ W + WI+WVGPF+GA +AA ++Y++
Sbjct: 214 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 18/231 (7%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RAA+AEF++TL+F++ +++ K + + S
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSK--ETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY------ 134
GGH+NPAVTFG L ++ ++RA+ Y IAQ LGAI L++ G P +
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKG--PYNQFGGGANS 177
Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGS----LGIVGPLAIGFIVGANILVG 190
VA G +G L EI+ TF LVYTV++ DPKR + + I+ PL IGF V L
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPILAPLPIGFAVFMVHLAT 236
Query: 191 GPFDGASMNPARAFGPALV---GWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
P G +NPAR+FG A++ W + WI+WVGPF+GA +AA ++Y++
Sbjct: 237 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 18/231 (7%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
RAA+AEF++TL+F++ +++ K + + S
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSK--ETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY------ 134
GGH+NPAVTFG L ++ ++RA+ Y IAQ LGAI L++ G P +
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKG--PYNQFGGGANS 173
Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGS----LGIVGPLAIGFIVGANILVG 190
VA G +G L EI+ TF LVYTV++ DPKR + + I+ PL IGF V L
Sbjct: 174 VALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPILAPLPIGFAVFMVHLAT 232
Query: 191 GPFDGASMNPARAFGPALV---GWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
P G +NPAR+FG A++ W + WI+WVGPF+GA +AA ++Y++
Sbjct: 233 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 283
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 110/243 (45%), Gaps = 31/243 (12%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPS-------------DXXXXXXXXXX 67
+ +AEF+ T I VF G GS A+ + + TSP+ D
Sbjct: 6 KRCIAEFIGTFILVFFGAGS-AAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGF 64
Query: 68 XXXXXXXSSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALL-LRFATN 126
+ N SG H+NPAVT G + + Y IAQLLGA + + L+ A
Sbjct: 65 AIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124
Query: 127 GMRPVGFYVAS----GVGEGHGLVLEIVMTFGLVYTVYATVIDPK--RGSLGIVGPLAIG 180
G VG A+ G+ ++ E+V TF L+ T+ +D + +G GI+ IG
Sbjct: 125 GAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII----IG 180
Query: 181 FIVGANILVGGPFDGASMNPARAFGPALVGW------RWRNHWIYWVGPFLGAGLAALIY 234
V I G G+S+NPAR FGP L W + IY +GP +GA LAAL Y
Sbjct: 181 LTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTY 240
Query: 235 EYI 237
+Y+
Sbjct: 241 QYL 243
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIY-----YWIAQLLGAIVAALLLRFATN 126
N SG +NPA TFG L I ++ Y I ++GA++AAL ++ T+
Sbjct: 192 NISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 80 SGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGV 139
SGG++NPAVT +L I R I Q++ + AA T G + G
Sbjct: 107 SGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGA 166
Query: 140 GEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMN 199
GL LE T L TV ++ R + P IG + L+ + GA +N
Sbjct: 167 SRTRGLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYTGAGLN 224
Query: 200 PARAFGPALVGWRWRN-HWIYWVGPFLGAGLAALIYE 235
PAR+FGPA+ + N HWIYW+GP LGA LA I++
Sbjct: 225 PARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQ 261
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 80 SGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALL-LRFATNGMRPVGFYVAS- 137
SG H+NPAVT GR + Y +AQ +GA + +LL L VG A+
Sbjct: 78 SGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATA 137
Query: 138 ---GVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFD 194
G+G G ++ E + TF L+ + +D +R G G L IG VG I G
Sbjct: 138 PFPGIGYGQAILTEAIGTFLLMLVIMGVAVD-ERAPPGFAG-LVIGLTVGGIITTIGNIT 195
Query: 195 GASMNPARAFGP----ALVGWR-WRNHWIYWVGPFLGAGLAALIYEYI 237
G+S+NPAR FGP +L+G W+ IY +GP +GA AA +Y Y+
Sbjct: 196 GSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAC 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 56 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 113
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 114 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 170
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 171 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 78 NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGF---- 133
+ SGGH NPAVT G GGR + Y IAQ++G IVAA LL +G GF
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG--KTGFDAAA 116
Query: 134 --YVASGVGEG--------HGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIV 183
+ ++G GE LV+E+V++ G + ++ K G P+AIG +
Sbjct: 117 SGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA--TDKFAPAGFA-PIAIGLAL 173
Query: 184 GANILVGGPFDGASMNPARAFGPALV--GWRWRNHWIYW 220
L+ P S+NPAR+ A+ GW W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 13/224 (5%)
Query: 21 RAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTS 80
R LAEF T VF G GS + + A + S
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAV----FAAAFPELGIGFTGVALAFGLTVLTMAYAVGGIS 86
Query: 81 GGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPV--GFYVASG 138
GGH NPAV+ G + GR + Y IAQ+ GAIVAA L G + G + ++G
Sbjct: 87 GGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNG 146
Query: 139 VGE----GHGLVLEIVMTFGLVYTVYATVIDPKRGSL-GIVGPLAIGFIVGANILVGGPF 193
GE G+ LV +++ L ++ G + P+AIG + L+ P
Sbjct: 147 YGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLALTLIHLISIPV 206
Query: 194 DGASMNPARAFGPALV--GWRWRNHWIYWVGPFLGAGLAALIYE 235
S+NPAR+ G AL GW + W++W+ P +G A+I++
Sbjct: 207 TNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWK 250
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 39/250 (15%)
Query: 23 ALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTSGG 82
+AEF+ T + +F G G + AL K++ A+ + SG
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAAL-KVAGASFGQ----WEISVIFGLGVAMAIYLTAGVSGA 65
Query: 83 HVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL------------------RFA 124
H+NPAVT L + I + ++Q+ GA AA L+ R +
Sbjct: 66 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGS 125
Query: 125 TNGMRPVGF---YVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGF 181
+ G Y + +E+V+T L+ + A D G + PL IG
Sbjct: 126 VESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGL 185
Query: 182 IVGANILVGGPFDGASMNPARAFGPALVGWR--WRN-----------HWIYWVGPFLGAG 228
++ GP G +MNPAR FGP + W W N + GP +GA
Sbjct: 186 LIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAI 245
Query: 229 LAALIYEYIV 238
+ A Y ++
Sbjct: 246 VGAFAYRKLI 255
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 84/216 (38%), Gaps = 28/216 (12%)
Query: 23 ALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXSSINTSGG 82
+AEF+ T + +F G G + AL K++ A+ + SG
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAAL-KVAGASFGQ----WEISVIWGLGVAMAIYLTAGVSGA 65
Query: 83 HVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL------------------RFA 124
H+NPAVT L + I + ++Q+ GA AA L+ R +
Sbjct: 66 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGS 125
Query: 125 TNGMRPVGF---YVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGF 181
+ G Y + +E+V+T L+ + A D G + PL IG
Sbjct: 126 VESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGL 185
Query: 182 IVGANILVGGPFDGASMNPARAFGPALVGWR--WRN 215
++ GP G +MNPAR FGP + W W N
Sbjct: 186 LIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGN 221
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 16 HPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDXXXXXXXXXXXXXXXXXS 75
+ +R + EF+ T + +F GEG+ TT D
Sbjct: 6 YKSYVREFIGEFLGTFVLMFLGEGATANFH-----TTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 76 SINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIV 116
S SG H+N AV+ G + + + Y+ AQLLGA V
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFV 101
>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|B Chain B, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|C Chain C, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|D Chain D, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
Length = 625
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 161 ATVIDPKRGSL-GIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRW-RNHWI 218
AT++D K G L I G +V N G+S+ P A+GPA+ +W NH I
Sbjct: 295 ATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAI 354
>pdb|2OLU|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Apoenzyme
pdb|2OLV|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
pdb|2OLV|B Chain B, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
Length = 669
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 161 ATVIDPKRGSL-GIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRW-RNHWI 218
AT++D K G L I G +V N G+S+ P A+GPA+ +W NH I
Sbjct: 304 ATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENXKWATNHAI 363
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 164 IDPKRGSLGIVGPLAIGFIVGA-NILVGGPFDGASMNPARAFGPALV 209
ID G LG VG IG++ G +VGG ++G AR+FG +LV
Sbjct: 159 IDVPAGDLG-VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLV 204
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 164 IDPKRGSLGIVGPLAIGFIVGA-NILVGGPFDGASMNPARAFGPALV 209
ID G LG VG IG++ G +VGG ++G AR+FG +LV
Sbjct: 159 IDVPAGDLG-VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLV 204
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 112 LGAIVAALLLRFATN--GMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRG 169
L ++A LLR A GMR + + SG + LE T G VYA +D KR
Sbjct: 187 LTPVLAQALLRLADARPGMRVLDPFTGSGT-----IALEAASTLGPTSPVYAGDLDEKRL 241
Query: 170 SLGIVGPLAIGF 181
L LA G
Sbjct: 242 GLAREAALASGL 253
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 164 IDPKRGSLGIVGPLAIGFIVGA-NILVGGPFDGASMNPARAFGPALV 209
ID G LG VG IG++ G +VGG ++G AR+FG +L+
Sbjct: 160 IDVPAGDLG-VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLI 205
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 164 IDPKRGSLGIVGPLAIGFIVGA-NILVGGPFDGASMNPARAFGPALV 209
ID G LG VG +G++ G +VGG ++G AR+FG +LV
Sbjct: 159 IDVPAGDLG-VGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLV 204
>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) Bound
Zn And 5'- Methylthioadenosine (Unproductive Complex)
pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) With
Bound Inosine
Length = 447
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 79 TSGGHVNPAVTF-GALLG------GRISVVRAIYYWIAQLLGA--------IVAALLLRF 123
T G HV+ F G+LL G + + Y++ A + A V +L F
Sbjct: 98 TEGKHVHDDFVFDGSLLAXGEXIRGGTTTINDXYFYNAAVARAGLASGXRTFVGCSILEF 157
Query: 124 ATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLV----YTV 159
TN Y+A G E + E ++TF L YTV
Sbjct: 158 PTNYASNADDYIAKGXAERSQFLGEDLLTFTLAPHAPYTV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,674,885
Number of Sequences: 62578
Number of extensions: 312208
Number of successful extensions: 742
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 48
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)