BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025198
MAATTTIKPLLPLSLSPNKSCSYSIPSSSSFISCNPISDSTATFSLLHSNRPRGQISVSV
AFNPQGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDAIRSLDLSPFHSATGITSPT
LAEPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDAAYPWIPVLLDWRAGEL
ARYAAMLVPHQMSMKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKTSDMARMLG
FGIEDRLFDLVDRESS

High Scoring Gene Products

Symbol, full name Information P value
CRR6
AT2G47910 		protein from Arabidopsis thaliana 1.3e-82

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025198
        (256 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2043338 - symbol:CRR6 "AT2G47910" species:3702...   828  1.3e-82   1


>TAIR|locus:2043338 [details] [associations]
            symbol:CRR6 "AT2G47910" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IMP]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009073
            "aromatic amino acid family biosynthetic process" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005309
            EMBL:AC006072 GO:GO:0009535 GO:GO:0010275 EMBL:AF324707
            EMBL:AF339704 EMBL:AY045692 EMBL:AY054146 EMBL:AY084309
            IPI:IPI00518582 PIR:A84921 RefSeq:NP_566113.1 UniGene:At.20688
            STRING:O82258 PaxDb:O82258 PRIDE:O82258 EnsemblPlants:AT2G47910.1
            GeneID:819403 KEGG:ath:AT2G47910 TAIR:At2g47910 eggNOG:COG5474
            HOGENOM:HOG000242602 InParanoid:O82258 OMA:FGIGDEL PhylomeDB:O82258
            ProtClustDB:CLSN2688993 ArrayExpress:O82258 Genevestigator:O82258
            InterPro:IPR014946 Pfam:PF08847 Uniprot:O82258
        Length = 246

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 151/200 (75%), Positives = 175/200 (87%)

Query:    56 ISVSVAFNPQGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDAIRSLDLSPFHSATG 115
             ++VSVAFNP GNFDI  FE++ +S K+EPPMPPT GR++VV++ND+I  LDLSPF  A G
Sbjct:    44 VAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIG 103

Query:   116 ITSPT---LAEPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDAAYPWIPVL 172
             ITSP    +AEPK +L+RTIGFTINY REDP DPRELSE+PD+RLWFVRLDA YPW+P+L
Sbjct:   104 ITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLL 163

Query:   173 LDWRAGELARYAAMLVPHQMSMKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKT 232
             LDWRAGELARYAAMLVPHQMS++MG+VFNPEALELF+MNKVFVVY W K+H V KPRLKT
Sbjct:   164 LDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKT 223

Query:   233 SDMARMLGFGIEDRLFDLVD 252
             SDMARMLGFGI D LFDL+D
Sbjct:   224 SDMARMLGFGIGDELFDLID 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       224   0.00099  112 3  11 22  0.37    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.01u 0.08s 19.09t   Elapsed:  00:00:01
  Total cpu time:  19.01u 0.08s 19.09t   Elapsed:  00:00:01
  Start:  Mon May 20 20:22:03 2013   End:  Mon May 20 20:22:04 2013

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