BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025198
         (256 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1
          Length = 537

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 49  SNRPRGQISVSVAFNPQGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDA 101
           S + RGQ+ V V + P  + DIP   D+ N+ +  P   P+ G   VV+ ++A
Sbjct: 375 SEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLLVVIVHEA 427


>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana
           GN=At4g17560 PE=2 SV=1
          Length = 225

 Score = 32.0 bits (71), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 29  SSFISCNPISDSTATFSLLHSNRPRGQISVSVAFNPQGNFDIPMFED--EGNSSKLEPPM 86
           SSF+SC P  DS  + S L  N P  +   S+    +  F +   E   E  S +    +
Sbjct: 29  SSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRNEFIVRAEEGNTEAESEEFVAEI 88

Query: 87  PPTEGRFDVVLENDAIRSLDLSPFHSATGITSPTLAEPKEFL----ERTIGFTINYTRED 142
             TEG  + V+E    R   +       GI +    E  E +    E   G  +    E 
Sbjct: 89  ADTEGNVEEVVEAKPTRKPRIK-LGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEV 147

Query: 143 PRDPRELSEFPDI 155
           P + R LS +  I
Sbjct: 148 PENKRRLSIYKGI 160


>sp|Q2RHW0|SYH_MOOTA Histidine--tRNA ligase OS=Moorella thermoacetica (strain ATCC
           39073) GN=hisS PE=3 SV=1
          Length = 423

 Score = 31.6 bits (70), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 81  KLEPPMPPTEGRFDVVLENDAIRSLDLSPFHSATGITSPTLAEPKEFLERTIGFTINYTR 140
           +++   PP EG  DV++   A   +DL+ F    G+ +  +   K++LER++   + Y  
Sbjct: 315 EIQGQEPPPEGGVDVLVVT-AGTGVDLAAFRLLAGLRAAGIRADKDYLERSLKGQMKYAN 373

Query: 141 EDP 143
             P
Sbjct: 374 RYP 376


>sp|Q91848|SIAM_XENLA Homeobox protein siamois OS=Xenopus laevis GN=siamois PE=1 SV=1
          Length = 246

 Score = 30.8 bits (68), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 65  QGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDAIRSL-DLSPFHSATGITSPTLAE 123
           Q  FD+  + D  N  ++       E R  V  +N   R L   + FHS  G  SPT   
Sbjct: 158 QNQFDLNPYPDFVNRCRIAKITGIPEPRIQVWFQNRRARHLPRATTFHSPQGRKSPTSEG 217

Query: 124 PKEFLERTIGF 134
           P+ FL R   +
Sbjct: 218 PRSFLSREAHY 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,833,621
Number of Sequences: 539616
Number of extensions: 4037275
Number of successful extensions: 9469
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9463
Number of HSP's gapped (non-prelim): 22
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)