Query 025198
Match_columns 256
No_of_seqs 63 out of 65
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f6w_A XRE-family like protein 43.8 18 0.00062 24.4 3.0 42 214-256 42-83 (83)
2 3kz3_A Repressor protein CI; f 40.6 24 0.00081 24.0 3.2 31 214-245 40-70 (80)
3 3omt_A Uncharacterized protein 35.6 33 0.0011 22.7 3.2 32 214-246 36-67 (73)
4 3bs3_A Putative DNA-binding pr 34.9 33 0.0011 22.4 3.1 33 214-247 38-70 (76)
5 2l49_A C protein; P2 bacteriop 34.1 15 0.00052 25.7 1.3 34 214-248 32-65 (99)
6 2r1j_L Repressor protein C2; p 31.7 28 0.00094 22.1 2.2 31 214-245 33-63 (68)
7 2xi8_A Putative transcription 30.4 32 0.0011 21.7 2.3 31 214-245 29-59 (66)
8 1adr_A P22 C2 repressor; trans 30.2 31 0.0011 22.5 2.3 31 214-245 33-63 (76)
9 1y7y_A C.AHDI; helix-turn-heli 30.2 43 0.0015 21.6 3.0 32 213-245 40-71 (74)
10 1vyk_A Oxygen-evolving enhance 28.6 17 0.00056 30.3 0.8 33 79-112 4-36 (149)
11 1x57_A Endothelial differentia 28.3 54 0.0018 22.6 3.4 34 214-248 41-74 (91)
12 2ewt_A BLDD, putative DNA-bind 28.1 57 0.002 21.0 3.3 30 215-245 39-68 (71)
13 2kpj_A SOS-response transcript 27.6 42 0.0014 23.5 2.8 33 213-246 36-68 (94)
14 1r69_A Repressor protein CI; g 26.2 43 0.0015 21.3 2.4 31 213-245 28-58 (69)
15 4gbm_A CURM sulfotransferase; 25.0 27 0.00091 29.3 1.5 35 216-250 283-317 (323)
16 3qq6_A HTH-type transcriptiona 23.4 47 0.0016 22.7 2.3 32 213-245 37-69 (78)
17 3b7h_A Prophage LP1 protein 11 22.6 49 0.0017 21.7 2.2 31 214-245 35-66 (78)
18 3bd1_A CRO protein; transcript 22.5 95 0.0033 20.9 3.7 28 214-243 26-55 (79)
19 1lmb_3 Protein (lambda repress 22.1 75 0.0026 21.7 3.2 32 214-246 45-76 (92)
20 2a6c_A Helix-turn-helix motif; 21.7 57 0.002 22.4 2.5 31 214-245 46-77 (83)
21 1ak6_A Destrin; actin depolyme 21.5 35 0.0012 27.8 1.5 27 186-212 2-28 (174)
22 2k9q_A Uncharacterized protein 21.5 45 0.0016 22.3 1.9 33 214-247 30-62 (77)
23 3mf2_A BLL0957 protein; aminoa 21.1 64 0.0022 30.1 3.3 42 186-227 186-228 (346)
24 2b5a_A C.BCLI; helix-turn-heli 21.0 55 0.0019 21.3 2.2 31 214-245 38-68 (77)
25 2wiu_B HTH-type transcriptiona 20.3 47 0.0016 22.4 1.8 31 214-245 40-70 (88)
26 2ofy_A Putative XRE-family tra 20.2 57 0.002 22.1 2.2 31 214-245 42-73 (86)
No 1
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=43.81 E-value=18 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.002 Sum_probs=30.5
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchhhhhhhhcCC
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLFDLVDRESS 256 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff~li~~~~~ 256 (256)
-.+.+|.+....++ -..+..+|+.||.++++=|-...+..||
T Consensus 42 ~~is~~e~g~~~~~-~~~l~~l~~~l~~~~~~l~~~~~~~~~s 83 (83)
T 3f6w_A 42 SFVSKTENAERRLD-VIEFMDFCRGIGTDPYALLSKLEAMTPS 83 (83)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHHTCCHHHHHHHHHTTCC-
T ss_pred HHHHHHHCCCCCCC-HHHHHHHHHHcCCCHHHHHHHHHhhccC
Confidence 45788988777777 5899999999999887655444444543
No 2
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=40.61 E-value=24 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.1
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..+++
T Consensus 40 ~~is~~e~g~~~~~-~~~~~~ia~~l~v~~~~ 70 (80)
T 3kz3_A 40 SAVAALFNGINALN-AYNAALLAKILKVSVEE 70 (80)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCCCHHH
Confidence 45889998888888 58999999999998863
No 3
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.59 E-value=33 Score=22.69 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.6
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccch
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDR 246 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ 246 (256)
-.+++|.+....++ ...+..+|+.||..++.=
T Consensus 36 ~~is~~e~g~~~~~-~~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 36 TTVSKWCTNDVQPS-LETLFDIAEALNVDVREL 67 (73)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCcCHHHH
Confidence 45889988887788 699999999999988653
No 4
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=34.93 E-value=33 Score=22.40 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=26.9
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchh
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRL 247 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~f 247 (256)
-.+++|.+....++ ...+..+|+.||..++.=|
T Consensus 38 ~~i~~~e~g~~~~~-~~~l~~ia~~l~~~~~~l~ 70 (76)
T 3bs3_A 38 NTISRWCSNKSQPS-LDMLVKVAELLNVDPRQLI 70 (76)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHHTSCGGGGB
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCcCHHHHh
Confidence 46789988877777 5889999999999887644
No 5
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=34.12 E-value=15 Score=25.66 Aligned_cols=34 Identities=6% Similarity=-0.084 Sum_probs=27.1
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchhh
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLF 248 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff 248 (256)
-.+++|.+....++ -..+..+|+.|||+++.++|
T Consensus 32 ~~is~~e~g~~~p~-~~~l~~ia~~l~~~v~~~~l 65 (99)
T 2l49_A 32 GTLSYYESGRSTPP-TDVMMNILQTPQFTKYTLWF 65 (99)
T ss_dssp HHHHHHTTTSSCCC-HHHHHHHHSSSSSSSSSSTT
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCCCCCHHHH
Confidence 35788988877777 58899999998888776655
No 6
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.74 E-value=28 Score=22.14 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=25.4
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..++.
T Consensus 33 ~~i~~~e~g~~~~~-~~~l~~i~~~l~~~~~~ 63 (68)
T 2r1j_L 33 VAISQWERSETEPN-GENLLALSKALQCSPDY 63 (68)
T ss_dssp HHHHHHHTTSSCCB-HHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCCCHHH
Confidence 45788988877777 58899999999988764
No 7
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.41 E-value=32 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.011 Sum_probs=25.2
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..++.
T Consensus 29 ~~i~~~e~g~~~~~-~~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 29 QTINGIEKNKYNPS-LQLALKIAYYLNTPLED 59 (66)
T ss_dssp HHHHHHHTTSCCCC-HHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCcCHHH
Confidence 45788988777777 58899999999988754
No 8
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.20 E-value=31 Score=22.49 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=25.7
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..++.
T Consensus 33 ~~i~~~e~g~~~~~-~~~l~~ia~~l~~~~~~ 63 (76)
T 1adr_A 33 VAISQWERSETEPN-GENLLALSKALQCSPDY 63 (76)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCcCHHH
Confidence 45889988877787 58899999999988765
No 9
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.15 E-value=43 Score=21.62 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=25.2
Q ss_pred HHhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 213 VFVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 213 vFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
--.+++|.+....++ ...+..+|+.||..++.
T Consensus 40 ~~~i~~~e~g~~~~~-~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 40 RSYVGGVERGQRNVS-LVNILKLATALDIEPRE 71 (74)
T ss_dssp HHHHHHHHTTCSCCB-HHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHHHhCcCHHH
Confidence 345788888777777 58899999999988764
No 10
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=28.58 E-value=17 Score=30.26 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCceeEEEeChhhhhhcCCchhhh
Q 025198 79 SSKLEPPMPPTEGRFDVVLENDAIRSLDLSPFHS 112 (256)
Q Consensus 79 ~~~~~p~~ppt~~r~~I~I~~d~I~~LDLSPv~~ 112 (256)
+-||.|||||..| +.=+.+.+.-+.|||--+.+
T Consensus 4 ~~~~~~~~~~~~~-~~g~~~~~~ard~~l~~~k~ 36 (149)
T 1vyk_A 4 PIVVGPPPPLSGG-LPGTENSDQARDGTLPYTKD 36 (149)
T ss_dssp CEECCCCCCC---------------------CTT
T ss_pred CCcCCCCCCCCCC-CCCcccchhhhccCcccccc
Confidence 4578888888877 77788888888888855333
No 11
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.30 E-value=54 Score=22.63 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=27.9
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchhh
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLF 248 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff 248 (256)
-.+++|.+....++ ...+..+|+.||..+++=++
T Consensus 41 ~~is~~e~g~~~p~-~~~l~~la~~l~v~~~~l~~ 74 (91)
T 1x57_A 41 QVIADYESGRAIPN-NQVLGKIERAIGLKLRGKDI 74 (91)
T ss_dssp HHHHHHHHTCSCCC-HHHHHHHHHHHTBCCSSTTT
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCcCHHHHcc
Confidence 46889988877787 58899999999999987443
No 12
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=28.10 E-value=57 Score=21.01 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=24.4
Q ss_pred hHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 215 VVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 215 vL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
.+++|.+....++ ...+..+|+.||.+++.
T Consensus 39 ~i~~~e~g~~~~~-~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 39 VVGSYERGDRAVT-VQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHHHHHHTCSCCC-HHHHHHHHHHHTSCGGG
T ss_pred HHHHHHCCCCCCC-HHHHHHHHHHHCcCHHH
Confidence 5788888777777 58899999999988764
No 13
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.55 E-value=42 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHhHHHHHhhcCCCCccchHHHHHHHhCCcccch
Q 025198 213 VFVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDR 246 (256)
Q Consensus 213 vFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ 246 (256)
--.+++|.+....++ ...+..+|+.||..++.=
T Consensus 36 ~~~is~~e~G~~~p~-~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 36 PQTFNTWCKGIAIPR-MGKVQALADYFNINKSDL 68 (94)
T ss_dssp HHHHHHHHTTSCCCC-HHHHHHHHHHHTCCTHHH
T ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHCcCHHHH
Confidence 346889998888888 689999999999887653
No 14
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.17 E-value=43 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 213 VFVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 213 vFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
--.+++|.+....+. .. +..+|+.||..++.
T Consensus 28 ~~~i~~~e~g~~~~~-~~-l~~la~~l~~~~~~ 58 (69)
T 1r69_A 28 QQSIEQLENGKTKRP-RF-LPELASALGVSVDW 58 (69)
T ss_dssp HHHHHHHHTTSCSSC-TT-HHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCCCCc-hH-HHHHHHHHCcCHHH
Confidence 345788988777666 34 99999999988764
No 15
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}
Probab=24.97 E-value=27 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=18.4
Q ss_pred HHHHHhhcCCCCccchHHHHHHHhCCcccchhhhh
Q 025198 216 VYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLFDL 250 (256)
Q Consensus 216 L~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff~l 250 (256)
+.+|-+......-+...+.|++.|||+++....+.
T Consensus 283 ~~~Wr~~~~~~~~~~~~~~~~~~lGY~l~~~~~~p 317 (323)
T 4gbm_A 283 ADKWKTIQLPYPLKSETQRIASQLSYELPNLVTTP 317 (323)
T ss_dssp GGGGGTCCCSSCCCHHHHHHHHHTTCCCC------
T ss_pred HHHHhhhcCHHHHHHHHHHHHHHcCCCCCccCCCC
Confidence 56673322212214567889999999998876554
No 16
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.44 E-value=47 Score=22.71 Aligned_cols=32 Identities=3% Similarity=-0.031 Sum_probs=25.9
Q ss_pred HHhHHHHHhh-cCCCCccchHHHHHHHhCCcccc
Q 025198 213 VFVVYTWFKQ-HNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 213 vFvL~~WLk~-~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
--.+++|.+. ...++ ...+..+|+.||..++.
T Consensus 37 ~~~is~~E~G~~~~p~-~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 37 KSYLSSIERNLQTNPS-IQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp HHHHHHHHTTSCCCCB-HHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHcCCCCCCC-HHHHHHHHHHHCcCHHH
Confidence 3457889888 67777 69999999999998754
No 17
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.64 E-value=49 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.0
Q ss_pred HhHHHHHhhcC-CCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHN-VQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~-i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+... .++ ...+..+|+.||..+++
T Consensus 35 ~~i~~~e~g~~~~~~-~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 35 STVNAMFEGRSKRPT-ITTIRKVCGTLGISVHD 66 (78)
T ss_dssp HHHHHHHCTTCCCCC-HHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHcCCCCCCC-HHHHHHHHHHcCCCHHH
Confidence 45788888776 777 58899999999998764
No 18
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.52 E-value=95 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=22.4
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhC--Ccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLG--FGI 243 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLG--yeL 243 (256)
-.+++|.+...+| . ..+..+|+.|| ..+
T Consensus 26 ~~is~~e~g~~~p-~-~~l~~ia~~l~~~v~~ 55 (79)
T 3bd1_A 26 SAISNWRARGRVP-A-ERCIDIERVTNGAVIC 55 (79)
T ss_dssp HHHHHHHHHTCCC-G-GGHHHHHHHTTTSSCH
T ss_pred HHHHHHHHCCCCC-H-HHHHHHHHHHCCCCcH
Confidence 4578998887777 3 88999999999 554
No 19
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.12 E-value=75 Score=21.66 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.4
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccch
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDR 246 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ 246 (256)
-.+.+|.+....++ ...+..+|+.||..++.=
T Consensus 45 ~~is~~e~g~~~~~-~~~l~~ia~~l~v~~~~l 76 (92)
T 1lmb_3 45 SGVGALFNGINALN-AYNAALLAKILKVSVEEF 76 (92)
T ss_dssp HHHHHHHTTSSCCC-HHHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHCCCHHHH
Confidence 45788888777777 588999999999987653
No 20
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.66 E-value=57 Score=22.38 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.4
Q ss_pred HhHHHHHhhcC-CCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHN-VQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~-i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+... .++ -..+..+|+.||..++-
T Consensus 46 ~~is~~e~g~~~~~~-~~~l~~la~~l~~~~~~ 77 (83)
T 2a6c_A 46 PRVSDLMRGKIDLFS-LESLIDMITSIGLKVEI 77 (83)
T ss_dssp HHHHHHHTTCGGGCC-HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHcCCCCCCC-HHHHHHHHHHcCCCeEE
Confidence 45788888765 366 58899999999999873
No 21
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=21.54 E-value=35 Score=27.83 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.2
Q ss_pred hhcccccccccceeeChhHHHHHHHhh
Q 025198 186 MLVPHQMSMKMGIVFNPEALELFIMNK 212 (256)
Q Consensus 186 MLVPHQFs~~eGI~FNPEALEifvm~K 212 (256)
|+-|+.|++..||..++|.++.|---|
T Consensus 2 ~~~~~~m~m~SGi~vs~e~~~~f~~~k 28 (174)
T 1ak6_A 2 MITPSSGNSASGVQVADEVCRIFYDMK 28 (174)
T ss_dssp CCCCCCSTTTTCCCCCSHHHHHHHHTS
T ss_pred CcCcCcccccCCCccCHHHHHHHHHHH
Confidence 888999999999999999998874433
No 22
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.47 E-value=45 Score=22.28 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=26.0
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchh
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRL 247 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~f 247 (256)
-.+++|.+....++ ...+..+|+.||..++.=|
T Consensus 30 ~~i~~~e~g~~~p~-~~~l~~ia~~l~v~~~~l~ 62 (77)
T 2k9q_A 30 QQLCNIEQSETAPV-VVKYIAFLRSKGVDLNALF 62 (77)
T ss_dssp HHHHHHHTCCSCCH-HHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCcCHHHHh
Confidence 45788888776677 5889999999999886533
No 23
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=21.05 E-value=64 Score=30.06 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=35.7
Q ss_pred hhcccccccccceeeC-hhHHHHHHHhhHHhHHHHHhhcCCCC
Q 025198 186 MLVPHQMSMKMGIVFN-PEALELFIMNKVFVVYTWFKQHNVQK 227 (256)
Q Consensus 186 MLVPHQFs~~eGI~FN-PEALEifvm~KvFvL~~WLk~~~i~~ 227 (256)
|.-=|||.+.|.++|- ||..+-.+.+=+-.....++..|++-
T Consensus 186 L~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~LgLpy 228 (346)
T 3mf2_A 186 LDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTF 228 (346)
T ss_dssp TTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 4456999999999997 99988888777777888899999986
No 24
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.98 E-value=55 Score=21.35 Aligned_cols=31 Identities=3% Similarity=-0.047 Sum_probs=24.9
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..++.
T Consensus 38 ~~i~~~e~g~~~~~-~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 38 TYISEVERGDRNIS-LINIHKICAALDIPAST 68 (77)
T ss_dssp HHHHHHHTTCSCCB-HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHCCCCCCC-HHHHHHHHHHhCcCHHH
Confidence 45788888777777 58899999999988754
No 25
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.31 E-value=47 Score=22.36 Aligned_cols=31 Identities=3% Similarity=-0.029 Sum_probs=24.6
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+....++ ...+..+|+.||..++.
T Consensus 40 ~~i~~~e~g~~~~~-~~~l~~i~~~l~~~~~~ 70 (88)
T 2wiu_B 40 ATISNFENNPDNTT-LTTFFKILQSLELSMTL 70 (88)
T ss_dssp HHHHHHHHCGGGCB-HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCCCHHH
Confidence 35788888776777 58899999999988764
No 26
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.24 E-value=57 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.6
Q ss_pred HhHHHHHhhcC-CCCccchHHHHHHHhCCcccc
Q 025198 214 FVVYTWFKQHN-VQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 214 FvL~~WLk~~~-i~~~r~~l~~MAqmLGyeLdd 245 (256)
-.+++|.+... .++ -..+..+|+.||..+++
T Consensus 42 ~~is~~E~g~~~~p~-~~~l~~ia~~l~v~~~~ 73 (86)
T 2ofy_A 42 ETLRKIETGRIATPA-FFTIAAVARVLDLSLDD 73 (86)
T ss_dssp HHHHHHHTTCCSSCB-HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCCCCCC-HHHHHHHHHHhCCCHHH
Confidence 35788887776 677 58899999999998764
Done!