Query 025198
Match_columns 256
No_of_seqs 63 out of 65
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 05:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025198.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025198hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mgta2 c.55.7.1 (A:1-88) O6-a 44.3 7.3 0.00054 28.6 2.9 32 194-227 23-54 (88)
2 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 39.9 19 0.0013 24.1 4.3 41 194-243 2-45 (73)
3 d2ecca1 a.4.1.1 (A:1-76) Homeo 37.0 21 0.0015 24.0 4.3 40 195-243 5-44 (76)
4 d1y7ya1 a.35.1.3 (A:5-73) Rest 33.9 16 0.0012 23.4 3.1 32 214-246 37-68 (69)
5 d1r69a_ a.35.1.2 (A:) 434 C1 r 27.6 18 0.0013 22.6 2.4 31 212-244 27-57 (63)
6 d2a6ca1 a.35.1.13 (A:1-69) HTH 26.2 20 0.0014 23.2 2.5 30 215-245 35-65 (69)
7 d1y9qa1 a.35.1.8 (A:4-82) Prob 26.1 29 0.0021 22.4 3.4 45 202-247 24-68 (79)
8 d1x2na1 a.4.1.1 (A:6-67) Homeo 25.5 48 0.0035 21.4 4.4 36 199-243 8-46 (62)
9 d2b5aa1 a.35.1.3 (A:1-77) Regu 25.4 23 0.0017 22.9 2.7 37 214-252 38-74 (77)
10 d1x57a1 a.35.1.12 (A:8-85) End 23.5 34 0.0025 22.5 3.4 33 213-246 33-65 (78)
11 d1utxa_ a.35.1.3 (A:) Putative 23.0 23 0.0017 22.4 2.3 33 212-245 27-59 (66)
12 d1jvna2 c.23.16.1 (A:-3-229) G 22.9 23 0.0016 27.5 2.7 37 194-233 189-225 (232)
13 d2r1jl1 a.35.1.2 (L:3-68) P22 21.1 26 0.0019 22.0 2.2 33 212-245 29-61 (66)
14 d2croa_ a.35.1.2 (A:) cro 434 20.3 29 0.0021 21.8 2.3 32 212-245 29-60 (65)
No 1
>d1mgta2 c.55.7.1 (A:1-88) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=44.31 E-value=7.3 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.7
Q ss_pred cccceeeChhHHHHHHHhhHHhHHHHHhhcCCCC
Q 025198 194 MKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQK 227 (256)
Q Consensus 194 ~~eGI~FNPEALEifvm~KvFvL~~WLk~~~i~~ 227 (256)
+-.||.|.-+ +-|+||++-.|...|+++|..-
T Consensus 23 kIqGI~fSlD--~~~L~~ri~~l~~~L~kRgv~v 54 (88)
T d1mgta2 23 RVQGIAFAFD--RGTLMKRIHDLAEHLGKRGVSI 54 (88)
T ss_dssp SEEEEEEESS--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred ceeeEEEEcC--hHHHHHHHHHHHHHHHhcCceE
Confidence 3579999988 5779999999999999998764
No 2
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.88 E-value=19 Score=24.07 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=31.2
Q ss_pred cccceeeChhHHHHHHHhhHHhHHHHHhhcC---CCCccchHHHHHHHhCCcc
Q 025198 194 MKMGIVFNPEALELFIMNKVFVVYTWFKQHN---VQKPRLKTSDMARMLGFGI 243 (256)
Q Consensus 194 ~~eGI~FNPEALEifvm~KvFvL~~WLk~~~---i~~~r~~l~~MAqmLGyeL 243 (256)
++...+|.++.++ +|..|+.++. .|+ ......||+.+|...
T Consensus 2 rk~R~~~t~~q~~--------~Le~~f~~~~~~pYPs-~~~k~~La~~~gl~~ 45 (73)
T d1pufb_ 2 RRKRRNFNKQATE--------ILNEYFYSHLSNPYPS-EEAKEELAKKCGITV 45 (73)
T ss_dssp CCCCCCCCHHHHH--------HHHHHHHHTTTSCCCC-HHHHHHHHHHHTSCH
T ss_pred CCCCCCCCHHHHH--------HHHHHHHHhcCCCCCC-HHHHHHHHHHHCcCH
Confidence 4566678888775 5888987644 588 688899999999753
No 3
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.04 E-value=21 Score=23.96 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=32.0
Q ss_pred ccceeeChhHHHHHHHhhHHhHHHHHhhcCCCCccchHHHHHHHhCCcc
Q 025198 195 KMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKTSDMARMLGFGI 243 (256)
Q Consensus 195 ~eGI~FNPEALEifvm~KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeL 243 (256)
+.|-+|.+|.+++ |..|++....|+ ......+|+.+|...
T Consensus 5 s~~~r~T~eQ~~~--------Le~~F~~n~~Ps-~~~~~~La~~~gL~~ 44 (76)
T d2ecca1 5 SSGKRKTKEQLAI--------LKSFFLQCQWAR-REDYQKLEQITGLPR 44 (76)
T ss_dssp CCCCCCCHHHHHH--------HHHHHHHCSSCC-HHHHHHHHHHTCCCH
T ss_pred CCCCCCCHHHHHH--------HHHHHHHcCCCC-HHHHHHHHHHHccCH
Confidence 4566777777664 778888899999 799999999999653
No 4
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=33.87 E-value=16 Score=23.43 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=26.2
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccch
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDR 246 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ 246 (256)
-.+++|-+....|+ -..+..||..||.++++=
T Consensus 37 ~~i~~~E~g~~~p~-~~~l~~ia~~l~v~~~~l 68 (69)
T d1y7ya1 37 SYVGGVERGQRNVS-LVNILKLATALDIEPREL 68 (69)
T ss_dssp HHHHHHHTTCSCCB-HHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHCCCCCCC-HHHHHHHHHHhCcCHHHH
Confidence 46788888888888 689999999999988763
No 5
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=27.57 E-value=18 Score=22.58 Aligned_cols=31 Identities=10% Similarity=0.137 Sum_probs=24.2
Q ss_pred hHHhHHHHHhhcCCCCccchHHHHHHHhCCccc
Q 025198 212 KVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIE 244 (256)
Q Consensus 212 KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLd 244 (256)
..-.+++|.+... +. -..+..||+.||++++
T Consensus 27 s~~~is~~E~g~~-~~-~~~l~~ia~~l~v~~~ 57 (63)
T d1r69a_ 27 TQQSIEQLENGKT-KR-PRFLPELASALGVSVD 57 (63)
T ss_dssp CHHHHHHHHTTSC-SS-CTTHHHHHHHTTCCHH
T ss_pred CHHHHHHHHCCCC-cC-HHHHHHHHHHHCcCHH
Confidence 3446889987654 55 4789999999999887
No 6
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=26.22 E-value=20 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=23.4
Q ss_pred hHHHHHhhc-CCCCccchHHHHHHHhCCcccc
Q 025198 215 VVYTWFKQH-NVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 215 vL~~WLk~~-~i~~~r~~l~~MAqmLGyeLdd 245 (256)
.+++|.... +-++ -.++..+|..||.+++-
T Consensus 35 ~is~ie~g~~~~~s-~~~L~~ia~~Lg~~i~~ 65 (69)
T d2a6ca1 35 RVSDLMRGKIDLFS-LESLIDMITSIGLKVEI 65 (69)
T ss_dssp HHHHHHTTCGGGCC-HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHcccccchh-HHHHHHHHHHhCCCcEe
Confidence 477887754 5667 58999999999999863
No 7
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=26.09 E-value=29 Score=22.45 Aligned_cols=45 Identities=7% Similarity=-0.131 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhHHhHHHHHhhcCCCCccchHHHHHHHhCCcccchh
Q 025198 202 PEALELFIMNKVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRL 247 (256)
Q Consensus 202 PEALEifvm~KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~f 247 (256)
-++|---+--.--.+++|-+....++ -..+..||+.||..+++=|
T Consensus 24 q~~lA~~~gis~~~i~~~E~g~~~p~-~~~l~~ia~~l~v~~~~l~ 68 (79)
T d1y9qa1 24 LDATAQLTGVSKAMLGQIERGESSPT-IATLWKIASGLEASFSAFF 68 (79)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCSCCC-HHHHHHHHHHHTCCSGGGG
T ss_pred HHHHHHHHCcchhHHHHHHcCCCCCC-HHHHHHHHHHHCCCHHHHh
Confidence 34443333334456889999888888 6999999999999987644
No 8
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.51 E-value=48 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=27.9
Q ss_pred eeChhHHHHHHHhhHHhHHHHHhhc---CCCCccchHHHHHHHhCCcc
Q 025198 199 VFNPEALELFIMNKVFVVYTWFKQH---NVQKPRLKTSDMARMLGFGI 243 (256)
Q Consensus 199 ~FNPEALEifvm~KvFvL~~WLk~~---~i~~~r~~l~~MAqmLGyeL 243 (256)
.|.++++++ |.+|+.++ ..|+ ......||+.+|.+.
T Consensus 8 ~~~~~~~~i--------L~~wf~~~~~nPyPs-~~e~~~La~~~~l~~ 46 (62)
T d1x2na1 8 VLPKHATNV--------MRSWLFQHIGHPYPT-EDEKKQIAAQTNLTL 46 (62)
T ss_dssp CCCHHHHHH--------HHHHHHHTTTSCCCC-HHHHHHHHHHHTCCH
T ss_pred CCCHHHHHH--------HHHHHHHhccCCCcC-HHHHHHHHHHHCcCH
Confidence 577887654 89998864 4678 688899999999753
No 9
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=25.41 E-value=23 Score=22.88 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=29.2
Q ss_pred HhHHHHHhhcCCCCccchHHHHHHHhCCcccchhhhhhh
Q 025198 214 FVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLFDLVD 252 (256)
Q Consensus 214 FvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff~li~ 252 (256)
-.+.+|.+....++ -..+..+|+.||..+++ ||.-.+
T Consensus 38 ~~i~~~e~g~~~p~-~~~l~~ia~~l~v~~~~-l~~~~~ 74 (77)
T d2b5aa1 38 TYISEVERGDRNIS-LINIHKICAALDIPAST-FFRKME 74 (77)
T ss_dssp HHHHHHHTTCSCCB-HHHHHHHHHHTTCCHHH-HHHHHH
T ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHhCCCHHH-Hhcccc
Confidence 45788988888888 69999999999998875 555444
No 10
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.49 E-value=34 Score=22.55 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHhHHHHHhhcCCCCccchHHHHHHHhCCcccch
Q 025198 213 VFVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDR 246 (256)
Q Consensus 213 vFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ 246 (256)
.-.+.+|-+.+..|+ -..+..+|+.||..|...
T Consensus 33 ~~~is~~E~G~~~p~-~~~l~~la~~l~v~l~~~ 65 (78)
T d1x57a1 33 PQVIADYESGRAIPN-NQVLGKIERAIGLKLRGK 65 (78)
T ss_dssp HHHHHHHHHTCSCCC-HHHHHHHHHHHTBCCSST
T ss_pred HHHHHHHHccCCCCC-HHHHHHHHHHhCCccccc
Confidence 456899999999999 699999999999998643
No 11
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=22.99 E-value=23 Score=22.44 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=27.9
Q ss_pred hHHhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 212 KVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 212 KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
.--.+..|-+....|+ -..+..||..||..+++
T Consensus 27 s~~~is~~e~g~~~p~-~~~l~~ia~~l~v~~~~ 59 (66)
T d1utxa_ 27 SRQTINGIEKNKYNPS-LQLALKIAYYLNTPLED 59 (66)
T ss_dssp CHHHHHHHHTTSCCCC-HHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHcCCCCCC-HHHHHHHHHHHCCCHHH
Confidence 3446889988888888 69999999999998876
No 12
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Probab=22.92 E-value=23 Score=27.46 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.4
Q ss_pred cccceeeChhHHHHHHHhhHHhHHHHHhhcCCCCccchHH
Q 025198 194 MKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKTS 233 (256)
Q Consensus 194 ~~eGI~FNPEALEifvm~KvFvL~~WLk~~~i~~~r~~l~ 233 (256)
.--|+||.|| +- =.+++-.|..|+++...+.|.....
T Consensus 189 nI~G~QFHPE-kS--~~~G~~lL~nFl~~~~~~~~~~~~~ 225 (232)
T d1jvna2 189 NIFATQFHPE-KS--GKAGLNVIENFLKQQSPPIPNYSAE 225 (232)
T ss_dssp TEEEESSBGG-GS--HHHHHHHHHHHHTTCCCCCCCCCHH
T ss_pred CEEEEeCCCc-cc--CHhHHHHHHHHHhccCCCCCCcChh
Confidence 3689999999 21 1356789999999999999865543
No 13
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=21.06 E-value=26 Score=22.02 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=27.6
Q ss_pred hHHhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 212 KVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 212 KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
..-.+.+|.+....|+ -..+..+|..||..++.
T Consensus 29 s~~~i~~~e~g~~~p~-~~~l~~ia~~l~v~~~~ 61 (66)
T d2r1jl1 29 SNVAISQWERSETEPN-GENLLALSKALQCSPDY 61 (66)
T ss_dssp CHHHHHHHHTTSSCCB-HHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHcCCCCCC-HHHHHHHHHHhCCCHHH
Confidence 3456889999988898 69999999999988863
No 14
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=20.29 E-value=29 Score=21.84 Aligned_cols=32 Identities=9% Similarity=-0.222 Sum_probs=24.1
Q ss_pred hHHhHHHHHhhcCCCCccchHHHHHHHhCCcccc
Q 025198 212 KVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIED 245 (256)
Q Consensus 212 KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd 245 (256)
.--.+..|.+....+. ..+..+|+.||.+++.
T Consensus 29 s~~ti~~~E~g~~~~~--~~l~~ia~~l~v~~~~ 60 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRP--RFLFEIAMALNCDPVW 60 (65)
T ss_dssp CHHHHHHHHTTCCSSC--TTHHHHHHHTTSCHHH
T ss_pred CHhHHHHHHCCCCCCH--HHHHHHHHHhCCCHHH
Confidence 3445788887765443 7899999999998875
Done!