BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025200
(256 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359479858|ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera]
gi|296086696|emb|CBI32331.3| unnamed protein product [Vitis vinifera]
Length = 367
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/255 (87%), Positives = 234/255 (91%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEV+DARIPLST+HP M+ WLGNRKRILVLNREDMIS DRNAWATY+A QG KV+
Sbjct: 112 MDVVIEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATYYAMQGIKVV 171
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMG+MKLSRLAK LAS VNVKRR+KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 FSNGQLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWV+FGKDLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDVA
Sbjct: 232 RMCPAAPRPGVTRQLKWVQFGKDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVA 291
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML RIP VG AL NRYKID DG CG FVQKLAL LFNGDTHQAAFRILTD
Sbjct: 292 DVAAILVQMLTRIPAVGPKALYNRYKIDTDGLCGNIFVQKLALQLFNGDTHQAAFRILTD 351
Query: 241 FRKGKFGWISLERPP 255
FRKGKFGWI+LERPP
Sbjct: 352 FRKGKFGWIALERPP 366
>gi|118485967|gb|ABK94828.1| unknown [Populus trichocarpa]
Length = 367
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/256 (85%), Positives = 234/256 (91%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L ++PTVG AL NRYK+D D CGK FVQKL++HLFNGDTHQAAFRIL+D
Sbjct: 292 DVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSD 351
Query: 241 FRKGKFGWISLERPPR 256
FRKGKFGW +LERPPR
Sbjct: 352 FRKGKFGWAALERPPR 367
>gi|224085461|ref|XP_002307583.1| predicted protein [Populus trichocarpa]
gi|222857032|gb|EEE94579.1| predicted protein [Populus trichocarpa]
Length = 387
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/255 (85%), Positives = 233/255 (91%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L ++PTVG AL NRYK+D D CGK FVQKL++HLFNGDTHQAAFRIL+D
Sbjct: 292 DVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSD 351
Query: 241 FRKGKFGWISLERPP 255
FRKGKFGW +LERPP
Sbjct: 352 FRKGKFGWAALERPP 366
>gi|449464824|ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
Length = 370
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/256 (84%), Positives = 232/256 (90%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIP+ST+HP MD WLGNR+RILVLNREDMIS ADRNAWATYF +QG KV+
Sbjct: 114 MDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDMISSADRNAWATYFTRQGIKVV 173
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQ GMGTMKL RLAK LA+DVNVKRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLKR
Sbjct: 174 FSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 233
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGIIPMRISDQ AAIKLAICDDIGERSY+ A
Sbjct: 234 RMCPAAPRPGVTRELKWVRFGNDLELLDSPGIIPMRISDQTAAIKLAICDDIGERSYNAA 293
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L ++P+VGI LQ RYK+D G CG+ FVQKLAL LFNGD HQAAFRIL+D
Sbjct: 294 DVAAILVQILTKLPSVGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSD 353
Query: 241 FRKGKFGWISLERPPR 256
FRKGKFGW +LERPPR
Sbjct: 354 FRKGKFGWTALERPPR 369
>gi|255559442|ref|XP_002520741.1| Nucleolar GTP-binding protein, putative [Ricinus communis]
gi|223540126|gb|EEF41703.1| Nucleolar GTP-binding protein, putative [Ricinus communis]
Length = 366
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/256 (83%), Positives = 233/256 (91%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWA YFA QG K +
Sbjct: 90 MDVVIEVRDARIPLSTTHPQMDSWLGNRKRILVLNREDMISKADRNAWANYFATQGIKAV 149
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NGQ GMGT+KLSRLAKALA+ VNVKRR+KGLLPR VRAG+VGYPNVGKSSLINRLLKR
Sbjct: 150 FANGQFGMGTVKLSRLAKALAASVNVKRRAKGLLPRPVRAGVVGYPNVGKSSLINRLLKR 209
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMC AA RPGVTR LKWVRFG +LE LDSPG++PMRI+DQ+AAIKLAICDDIGERSYDVA
Sbjct: 210 RMCEAASRPGVTRELKWVRFGNELELLDSPGMLPMRINDQSAAIKLAICDDIGERSYDVA 269
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML RIP+VG+ AL RYKID+DG G+ F+QKLA+ LFNGDTHQAAFRILTD
Sbjct: 270 DVAAILVQMLTRIPSVGLEALHRRYKIDVDGYNGRIFIQKLAIQLFNGDTHQAAFRILTD 329
Query: 241 FRKGKFGWISLERPPR 256
FRKGKFGW++LERPPR
Sbjct: 330 FRKGKFGWVALERPPR 345
>gi|363807764|ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max]
gi|255634965|gb|ACU17841.1| unknown [Glycine max]
Length = 391
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/256 (83%), Positives = 233/256 (91%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRD RIP+ST+HP MD WLGNRKRILVLNREDMIS ADRNAWA YF + GTKV+
Sbjct: 111 MDVVIEVRDGRIPMSTSHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVV 170
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL RLAK LA+DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR
Sbjct: 171 FSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 230
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR L+WVRFGKDLE LDSPGI+PMRISDQ+AAIKLAICDDIGERSYDVA
Sbjct: 231 RMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVA 290
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML+++PTVG AL RYKID+D G+ F++KLA+ +FNGD HQAAFR+L D
Sbjct: 291 DVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLAD 350
Query: 241 FRKGKFGWISLERPPR 256
FRKGKFGW +LERPP+
Sbjct: 351 FRKGKFGWTALERPPK 366
>gi|242090637|ref|XP_002441151.1| hypothetical protein SORBIDRAFT_09g021290 [Sorghum bicolor]
gi|241946436|gb|EES19581.1| hypothetical protein SORBIDRAFT_09g021290 [Sorghum bicolor]
Length = 375
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/255 (81%), Positives = 228/255 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIE+RDARIPLST+HP MD WLGNRKRI+VLNREDMIS DRNAWATYFA QGTKV+
Sbjct: 120 MDVVIEIRDARIPLSTSHPKMDSWLGNRKRIIVLNREDMISTEDRNAWATYFANQGTKVV 179
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL R+AK++AS VN KR+ KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 180 FSNGQLGMGTMKLGRMAKSVASVVNTKRKEKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 239
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ +A+KLAICDDIGERSYD A
Sbjct: 240 RMCPAAPRPGVTRELKWVRFGTDLELLDSPGILPMRISDQTSALKLAICDDIGERSYDFA 299
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML R P G A + RY+ID+D CGKTFV KL++HLFNGDT QAAFRIL+D
Sbjct: 300 DVAAILVQMLIRHPAAGSEAFRRRYRIDVDSDCGKTFVTKLSVHLFNGDTSQAAFRILSD 359
Query: 241 FRKGKFGWISLERPP 255
+RKGKFGW++LERPP
Sbjct: 360 YRKGKFGWVALERPP 374
>gi|218196848|gb|EEC79275.1| hypothetical protein OsI_20063 [Oryza sativa Indica Group]
Length = 371
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/255 (80%), Positives = 227/255 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPL+T+HP MD WLGNRKRI+V+NREDM+S DRNAWA+YFA QGTKV+
Sbjct: 116 MDVVIEVRDARIPLATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVV 175
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+SNGQLGMGTMKL R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKR
Sbjct: 176 YSNGQLGMGTMKLGRMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 235
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ AAIKLAICDDIGERSYD A
Sbjct: 236 RMCPAAPRPGVTRELKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFA 295
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L R P VG A + RY++DMD CGK FV KL++HLFNGD QAAFRIL+D
Sbjct: 296 DVAAILVQLLVRHPAVGPEAFRRRYRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSD 355
Query: 241 FRKGKFGWISLERPP 255
+RKGKFG ++LERPP
Sbjct: 356 YRKGKFGCVALERPP 370
>gi|326533414|dbj|BAJ93679.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/255 (80%), Positives = 227/255 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPL+TTHP MD WLGNR+RI+V+NREDM+S DRNAWATYF+ QG KV+
Sbjct: 117 MDVVIEVRDARIPLATTHPKMDSWLGNRRRIIVMNREDMVSADDRNAWATYFSSQGIKVV 176
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+SNGQLGMGTMKL R+AK+ AS VN KRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 177 YSNGQLGMGTMKLGRMAKSAASTVNTKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 236
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFGKDLE LDSPGI+PMRISDQ AA+KLAICDDIGERSYD A
Sbjct: 237 RMCPAAPRPGVTRELKWVRFGKDLELLDSPGILPMRISDQTAALKLAICDDIGERSYDFA 296
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L R P VG A + RYKID+D CGK FV KL++HLFNGDT QAAFRIL+D
Sbjct: 297 DVAAILVQILLRHPAVGSEAFRKRYKIDVDSDCGKLFVTKLSVHLFNGDTTQAAFRILSD 356
Query: 241 FRKGKFGWISLERPP 255
FRKG+FGW++LERPP
Sbjct: 357 FRKGRFGWVALERPP 371
>gi|115464049|ref|NP_001055624.1| Os05g0430400 [Oryza sativa Japonica Group]
gi|55733919|gb|AAV59426.1| putative GTP-binding protein [Oryza sativa Japonica Group]
gi|113579175|dbj|BAF17538.1| Os05g0430400 [Oryza sativa Japonica Group]
gi|215693391|dbj|BAG88773.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222631679|gb|EEE63811.1| hypothetical protein OsJ_18635 [Oryza sativa Japonica Group]
Length = 371
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/255 (80%), Positives = 227/255 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPL+T+HP MD WLGNRKRI+V+NREDM+S DRNAWA+YFA QGTKV+
Sbjct: 116 MDVVIEVRDARIPLATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVV 175
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+SNGQLGMGTMKL R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKR
Sbjct: 176 YSNGQLGMGTMKLGRMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 235
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ AAIKLAICDDIGERSYD A
Sbjct: 236 RMCPAAPRPGVTRELKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFA 295
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L R P VG A + RY++DMD CGK FV KL++HLFNGD QAAFRIL+D
Sbjct: 296 DVAAILVQLLVRHPAVGPEAFRRRYRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSD 355
Query: 241 FRKGKFGWISLERPP 255
+RKGKFG ++LERPP
Sbjct: 356 YRKGKFGCVALERPP 370
>gi|357129118|ref|XP_003566214.1| PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis GTPase A-like
[Brachypodium distachyon]
Length = 376
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/255 (80%), Positives = 227/255 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPL+TTHP MD WLGNR+RI+V+NREDM+S DRNAWATYF+ QG KV+
Sbjct: 121 MDVVIEVRDARIPLATTHPKMDSWLGNRRRIIVMNREDMVSAEDRNAWATYFSSQGIKVM 180
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+SNGQLGMGTMKL R+AK++AS VN KRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 181 YSNGQLGMGTMKLGRMAKSVASTVNTKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 240
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFGKDLE LDSPGI+PMRISDQ AA+KLAICDDIGERSYD
Sbjct: 241 RMCPAAPRPGVTRELKWVRFGKDLELLDSPGILPMRISDQTAALKLAICDDIGERSYDFD 300
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQ+L R P VG A + RYKI++D CGK FV KL+LHLFNGDT QAAFRIL+D
Sbjct: 301 DVAAILVQLLLRHPAVGSEAFRKRYKINVDSDCGKMFVTKLSLHLFNGDTSQAAFRILSD 360
Query: 241 FRKGKFGWISLERPP 255
FRKG+FGW++LERPP
Sbjct: 361 FRKGRFGWVALERPP 375
>gi|226529586|ref|NP_001142010.1| uncharacterized protein LOC100274162 [Zea mays]
gi|194706778|gb|ACF87473.1| unknown [Zea mays]
gi|413945545|gb|AFW78194.1| hypothetical protein ZEAMMB73_373816 [Zea mays]
Length = 375
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/255 (80%), Positives = 225/255 (88%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIE+RDARIPLST+HP MD WLGNRKRI+VLNR+DMIS D NAWATYF QG KV+
Sbjct: 120 MDVVIEIRDARIPLSTSHPKMDSWLGNRKRIIVLNRKDMISTEDMNAWATYFGNQGIKVV 179
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL R+AK++AS N KR+ KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 180 FSNGQLGMGTMKLGRMAKSVASVANTKRKEKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 239
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ +AIKLAICDDIGERSYD A
Sbjct: 240 RMCPAAPRPGVTRELKWVRFGTDLELLDSPGILPMRISDQTSAIKLAICDDIGERSYDFA 299
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML R P VG A + RYKID+D CGKTFV KL++HLFNGDT QAAFRIL+D
Sbjct: 300 DVAAILVQMLIRHPAVGSEAFRRRYKIDVDSECGKTFVTKLSVHLFNGDTSQAAFRILSD 359
Query: 241 FRKGKFGWISLERPP 255
+RKGKFGW++LERPP
Sbjct: 360 YRKGKFGWVALERPP 374
>gi|413945543|gb|AFW78192.1| hypothetical protein ZEAMMB73_373816 [Zea mays]
Length = 256
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/255 (80%), Positives = 225/255 (88%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIE+RDARIPLST+HP MD WLGNRKRI+VLNR+DMIS D NAWATYF QG KV+
Sbjct: 1 MDVVIEIRDARIPLSTSHPKMDSWLGNRKRIIVLNRKDMISTEDMNAWATYFGNQGIKVV 60
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL R+AK++AS N KR+ KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 61 FSNGQLGMGTMKLGRMAKSVASVANTKRKEKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 120
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ +AIKLAICDDIGERSYD A
Sbjct: 121 RMCPAAPRPGVTRELKWVRFGTDLELLDSPGILPMRISDQTSAIKLAICDDIGERSYDFA 180
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVAAILVQML R P VG A + RYKID+D CGKTFV KL++HLFNGDT QAAFRIL+D
Sbjct: 181 DVAAILVQMLIRHPAVGSEAFRRRYKIDVDSECGKTFVTKLSVHLFNGDTSQAAFRILSD 240
Query: 241 FRKGKFGWISLERPP 255
+RKGKFGW++LERPP
Sbjct: 241 YRKGKFGWVALERPP 255
>gi|4263509|gb|AAD15335.1| hypothetical protein [Arabidopsis thaliana]
gi|7269764|emb|CAB77764.1| hypothetical protein [Arabidopsis thaliana]
Length = 375
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 225/255 (88%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS DRN WA YFAKQG KVI
Sbjct: 120 MDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVI 179
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR
Sbjct: 180 FTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKR 239
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD
Sbjct: 240 KICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFT 299
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVA ILVQMLARIP VG AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTD
Sbjct: 300 DVAGILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTD 359
Query: 241 FRKGKFGWISLERPP 255
FRKGKFG++SLERPP
Sbjct: 360 FRKGKFGYVSLERPP 374
>gi|17644179|gb|AAL38787.1| unknown protein [Arabidopsis thaliana]
Length = 372
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 225/255 (88%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS DRN WA YFAKQG KVI
Sbjct: 117 MDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVI 176
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR
Sbjct: 177 FTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKR 236
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD
Sbjct: 237 KICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFT 296
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVA ILVQMLARIP VG AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTD
Sbjct: 297 DVAGILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTD 356
Query: 241 FRKGKFGWISLERPP 255
FRKGKFG++SLERPP
Sbjct: 357 FRKGKFGYVSLERPP 371
>gi|22328255|ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana]
gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis thaliana]
gi|332656830|gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana]
Length = 372
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 225/255 (88%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS DRN WA YFAKQG KVI
Sbjct: 117 MDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVI 176
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR
Sbjct: 177 FTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKR 236
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD
Sbjct: 237 KICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFT 296
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVA ILVQMLARIP VG AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTD
Sbjct: 297 DVAGILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTD 356
Query: 241 FRKGKFGWISLERPP 255
FRKGKFG++SLERPP
Sbjct: 357 FRKGKFGYVSLERPP 371
>gi|297814025|ref|XP_002874896.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
gi|297320733|gb|EFH51155.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
Length = 372
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 224/255 (87%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS DRN WA YFAKQG KVI
Sbjct: 117 MDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVI 176
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR
Sbjct: 177 FTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKR 236
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD
Sbjct: 237 KICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFT 296
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
DVA ILVQMLARIP VG AL NRYKI ++G CGK FV L L+LF GD+HQAAFRILTD
Sbjct: 297 DVAGILVQMLARIPEVGANALYNRYKIQLEGGCGKKFVTTLGLNLFGGDSHQAAFRILTD 356
Query: 241 FRKGKFGWISLERPP 255
FRKGKFG++SLERPP
Sbjct: 357 FRKGKFGYVSLERPP 371
>gi|413945544|gb|AFW78193.1| hypothetical protein ZEAMMB73_373816 [Zea mays]
Length = 350
Score = 365 bits (938), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 175/217 (80%), Positives = 189/217 (87%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIE+RDARIPLST+HP MD WLGNRKRI+VLNR+DMIS D NAWATYF QG KV+
Sbjct: 120 MDVVIEIRDARIPLSTSHPKMDSWLGNRKRIIVLNRKDMISTEDMNAWATYFGNQGIKVV 179
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL R+AK++AS N KR+ KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 180 FSNGQLGMGTMKLGRMAKSVASVANTKRKEKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 239
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ +AIKLAICDDIGERSYD A
Sbjct: 240 RMCPAAPRPGVTRELKWVRFGTDLELLDSPGILPMRISDQTSAIKLAICDDIGERSYDFA 299
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF 217
DVAAILVQML R P VG A + RYKID+D CGKT+
Sbjct: 300 DVAAILVQMLIRHPAVGSEAFRRRYKIDVDSECGKTY 336
>gi|413945546|gb|AFW78195.1| hypothetical protein ZEAMMB73_373816 [Zea mays]
Length = 362
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/210 (81%), Positives = 184/210 (87%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIE+RDARIPLST+HP MD WLGNRKRI+VLNR+DMIS D NAWATYF QG KV+
Sbjct: 120 MDVVIEIRDARIPLSTSHPKMDSWLGNRKRIIVLNRKDMISTEDMNAWATYFGNQGIKVV 179
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
FSNGQLGMGTMKL R+AK++AS N KR+ KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 180 FSNGQLGMGTMKLGRMAKSVASVANTKRKEKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 239
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RMCPAAPRPGVTR LKWVRFG DLE LDSPGI+PMRISDQ +AIKLAICDDIGERSYD A
Sbjct: 240 RMCPAAPRPGVTRELKWVRFGTDLELLDSPGILPMRISDQTSAIKLAICDDIGERSYDFA 299
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
DVAAILVQML R P VG A + RYKID+D
Sbjct: 300 DVAAILVQMLIRHPAVGSEAFRRRYKIDVD 329
>gi|168046695|ref|XP_001775808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672815|gb|EDQ59347.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/256 (61%), Positives = 207/256 (80%), Gaps = 1/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRDARIP++T HP +D+W+GN+++I+V+NREDM+S AD+ W YFAKQG V+
Sbjct: 39 MDVVIEVRDARIPMATAHPEIDEWMGNKQKIIVMNREDMVSNADKQVWGEYFAKQGISVL 98
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NGQ G GTMKL+R+AK+ A D+N +R++KGLLPR VRA +VGYPNVGKSSLINRLLKR
Sbjct: 99 FANGQRGTGTMKLARMAKSAADDINARRKAKGLLPRNVRAAVVGYPNVGKSSLINRLLKR 158
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++C AAPRPGVT+ L+W R L+ LD+PG++PMRI DQA A +LAIC+DIGE SY VA
Sbjct: 159 KVCAAAPRPGVTKHLQWARVVDGLDLLDAPGVLPMRIQDQAGATRLAICNDIGENSYAVA 218
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-MDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
VAA+LV+M+ RIP+ G LQ RYK++ + G++ ++++A LF GD +QAA R+L
Sbjct: 219 GVAAVLVEMIKRIPSAGPQVLQKRYKLENVRNMSGESLLEEVAQALFQGDVNQAAQRVLR 278
Query: 240 DFRKGKFGWISLERPP 255
D+RKG+FGW +LERPP
Sbjct: 279 DYRKGEFGWFALERPP 294
>gi|302818624|ref|XP_002990985.1| hypothetical protein SELMODRAFT_132651 [Selaginella moellendorffii]
gi|300141316|gb|EFJ08029.1| hypothetical protein SELMODRAFT_132651 [Selaginella moellendorffii]
Length = 276
Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 148/248 (59%), Positives = 193/248 (77%)
Query: 8 RDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 67
RDARIP +T HP +++W+ +KRILVLNREDMIS ADRNAWA+YFA + VIF+NGQ G
Sbjct: 27 RDARIPSATGHPDLEKWIRGKKRILVLNREDMISTADRNAWASYFASKDMPVIFTNGQQG 86
Query: 68 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 127
G MKL+R A ++AS +N KRR KGLLPR+VR +VG+PN+GKSS+INRLLKR++C AAP
Sbjct: 87 KGIMKLTRQAGSVASTINSKRRDKGLLPRSVRVAVVGFPNIGKSSIINRLLKRKICEAAP 146
Query: 128 RPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILV 187
RPGVTR L+W L+ LDSPGI+PM+ DQAAA+KLAIC+DIG+ SY+V+ VAA+LV
Sbjct: 147 RPGVTRQLRWSTIHDGLDLLDSPGILPMKFDDQAAAVKLAICNDIGQESYEVSGVAAVLV 206
Query: 188 QMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFG 247
+ L R+P G L +RY++D + G+ +++ +A LF GD +QAA R+L DFR+GKFG
Sbjct: 207 ERLKRLPAAGAKVLTSRYRVDAEDCSGEYYLELVAQKLFQGDVNQAATRLLLDFRRGKFG 266
Query: 248 WISLERPP 255
W +LE PP
Sbjct: 267 WFALESPP 274
>gi|302802247|ref|XP_002982879.1| hypothetical protein SELMODRAFT_117255 [Selaginella moellendorffii]
gi|300149469|gb|EFJ16124.1| hypothetical protein SELMODRAFT_117255 [Selaginella moellendorffii]
Length = 276
Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 146/248 (58%), Positives = 191/248 (77%)
Query: 8 RDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 67
RDARIP +T HP +++W+ +KRILVLNREDMIS ADRNAWA+YFA + VIF+NGQ G
Sbjct: 27 RDARIPSATGHPDLEKWIRGKKRILVLNREDMISTADRNAWASYFASKDMPVIFTNGQQG 86
Query: 68 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 127
G MKL+R A ++ S +N KRR KGLLPR+VR +VG+PN+GKSS+INRLLKR++C AAP
Sbjct: 87 KGIMKLTRQAGSVGSTINSKRRDKGLLPRSVRVAVVGFPNIGKSSIINRLLKRKICEAAP 146
Query: 128 RPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILV 187
RPGVTR L+W L+ LDSPGI+PM+ DQAAA+KLAIC+DIG+ SY+V+ VAA+LV
Sbjct: 147 RPGVTRQLRWSTIHDGLDLLDSPGILPMKFDDQAAAVKLAICNDIGQESYEVSGVAAVLV 206
Query: 188 QMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFG 247
+ L R+P G L +RY++D + G+ +++ +A LF GD +QAA R+L DFR+GKFG
Sbjct: 207 ERLKRLPAAGAKVLTSRYRVDAEDCSGEYYLELVAQKLFQGDVNQAATRLLLDFRRGKFG 266
Query: 248 WISLERPP 255
+LE PP
Sbjct: 267 CFALESPP 274
>gi|354565742|ref|ZP_08984916.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
gi|353548615|gb|EHC18060.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
Length = 293
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 179/260 (68%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP + QW+GN+KR+LVLNR DMIS R WA +F +QG +V
Sbjct: 33 VDVVLEVRDARIPLSTFHPQIPQWIGNKKRLLVLNRLDMISEQVRQLWADWFKRQGEQVF 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +S+ +A ++N +RR +G+LPR VRA ++G+PNVGKS+LINRL+ R
Sbjct: 93 FTNAQQGQGVTAVSKATQATGVELNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLVGR 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +DLE LD+PG+IP ++ DQ A +KLA+CDDIGE +YD
Sbjct: 153 RVVESAARPGVTRQLRWVRISEDLELLDAPGVIPAKLEDQEAGLKLAVCDDIGEAAYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA V ++ + + L++RY +D + G++++ L+ GD + A
Sbjct: 213 LIAAAFVDLVNELYAIAPDVLPENPLRSRYDLDPTSSTGESYLHNLSELRHKGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
+ILTDFRKG G + LE PP
Sbjct: 273 QILTDFRKGFLGTLPLELPP 292
>gi|427718535|ref|YP_007066529.1| ribosome biogenesis GTP-binding protein YlqF [Calothrix sp. PCC
7507]
gi|427350971|gb|AFY33695.1| ribosome biogenesis GTP-binding protein YlqF [Calothrix sp. PCC
7507]
Length = 292
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 179/259 (69%), Gaps = 5/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP +++W+G++ R+LVLNR DMI+ R+ W +F QG
Sbjct: 33 VDVVLEVRDARIPLATHHPQIEEWVGSKARVLVLNRVDMITPQMRSLWINWFKFQGETAY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G ++ + A+A ++N +RR +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FTNAQHGQGVTEVCKAAQAAGLELNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR + LE LD+PG+IP+++ DQ AA+KLAICDDIGE +YD
Sbjct: 153 RVVESAARPGVTRQLRWVRISEQLELLDAPGVIPLKLEDQGAALKLAICDDIGEAAYDNQ 212
Query: 181 DVAAILVQMLARIPTVGI-----TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV +L + V L++RY++D G+ ++ LA H + GD +AA
Sbjct: 213 LVAAELVDILNHLQDVATKLLPQKILESRYQLDSTPHTGEEYLHALAEHRYKGDIERAAR 272
Query: 236 RILTDFRKGKFGWISLERP 254
+LTD+RKG G I LE P
Sbjct: 273 HLLTDYRKGLLGTIPLEIP 291
>gi|428226923|ref|YP_007111020.1| Ras superfamily GTP-binding protein YlqF [Geitlerinema sp. PCC
7407]
gi|427986824|gb|AFY67968.1| Ras superfamily GTP-binding protein YlqF [Geitlerinema sp. PCC
7407]
Length = 291
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 178/261 (68%), Gaps = 6/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP + QW+G++ R+LVLNREDMI + AW +F G
Sbjct: 27 VDVVLEVRDARIPLSTHHPQVPQWVGSKGRVLVLNREDMIPPVAQQAWTDWFTAAGEVPC 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +S+ + + + VN +RR +G+LPR +RA ++G+PNVGKS+LINRLLK+
Sbjct: 87 FTNAQQGKGIQAVSQAVQEVGAHVNERRRDRGMLPRPIRAVVIGFPNVGKSALINRLLKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +E LD+PG++P R++DQAAA+KLAICDDIGE SYD
Sbjct: 147 RVVESARRPGVTRQLRWVRISDQIELLDAPGVLPSRLNDQAAALKLAICDDIGEASYDNQ 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAA 234
VAA L++ML + V + LQ RY +D + G+ ++ ++A F D + A
Sbjct: 207 RVAAALIEMLKELQQSAPKFVSGSPLQERYSLDPNSCTGEDYLARVAEQARFQNDVERVA 266
Query: 235 FRILTDFRKGKFGWISLERPP 255
++L DFRKG G I+LE PP
Sbjct: 267 RQVLHDFRKGLMGAIALEVPP 287
>gi|428296853|ref|YP_007135159.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
gi|428233397|gb|AFY99186.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
Length = 293
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 174/260 (66%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP +++W+G +KR+LV+N+ DM++ A RN W +F QG
Sbjct: 33 VDVVLEVRDARIPLATQHPQLNEWIGTKKRVLVINKVDMVTPAIRNVWIDWFKSQGETPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G L + A+A ++N +R ++G+L R VRA ++G+PNVGKS+LINRLLK+
Sbjct: 93 FTNSQQGNGIDALGKAAQAAGVELNQRRHNRGMLSRPVRAVVIGFPNVGKSALINRLLKK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +E LD+PG+IP+++ DQ AA+KLAICDDIG+ SYD
Sbjct: 153 RVVESANRPGVTRSLRWVRISDQIELLDAPGVIPLKLEDQEAALKLAICDDIGDASYDNQ 212
Query: 181 DVAAILVQMLARIPTVGI-----TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA+ + L V LQ RY+ + G ++ LA +NGD +AA
Sbjct: 213 LVASAFIDTLTYFEAVATELLPPNPLQTRYEFETTDYTGDVYLHALAEFRYNGDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
+ILTDFRKG G I LE PP
Sbjct: 273 QILTDFRKGLLGKIPLELPP 292
>gi|434395207|ref|YP_007130154.1| Ras superfamily GTP-binding protein YlqF [Gloeocapsa sp. PCC 7428]
gi|428267048|gb|AFZ32994.1| Ras superfamily GTP-binding protein YlqF [Gloeocapsa sp. PCC 7428]
Length = 287
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/259 (51%), Positives = 177/259 (68%), Gaps = 4/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + +W+GN+ R+LVLNR DMI + WA +F +QG +
Sbjct: 27 VDVVLEVRDARIPLATHHPQVKEWVGNKMRVLVLNRVDMIQPQAQRMWAQWFREQGEEPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G + +++ A+A VN +RR +G+LPR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 FTNAQKGEGVIAIAKAAQAAGVAVNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A RPGVTR L+WVR LE LD+PG+IP +++DQ AA KLAICDDIG+ SYD
Sbjct: 147 KVVESAARPGVTRQLRWVRISDQLELLDAPGVIPAKLNDQQAAFKLAICDDIGDASYDNQ 206
Query: 181 DVAAILVQML----ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
VAA LV +L A P + NRYK+D G+ ++ LA + GD + A
Sbjct: 207 RVAATLVDLLKSLTATAPELFPEDPLNRYKLDPTLFTGEAYIHTLAHQHYQGDVERTARS 266
Query: 237 ILTDFRKGKFGWISLERPP 255
+LTDFRKG G ISLE PP
Sbjct: 267 LLTDFRKGALGAISLELPP 285
>gi|411116865|ref|ZP_11389352.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoriales
cyanobacterium JSC-12]
gi|410712968|gb|EKQ70469.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoriales
cyanobacterium JSC-12]
Length = 285
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 175/255 (68%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + QW+G ++R+LVLNR DMI R W +F QG +
Sbjct: 27 VDVVLEVRDARIPLATAHPQVKQWIGEKERVLVLNRVDMIPAQARQQWVEWFKAQGEEPF 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G +++ A+A +N +RR +G+LPR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 FTDAQHGKGIEAITKAAQAAGEKMNQRRRDRGMLPRPVRAVVMGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVTR L+W+R +E LD+PG++P +++DQ AA+KLAICDDIGE +YD
Sbjct: 147 RVVDSARRAGVTRSLRWIRISDQIELLDAPGVLPSKLNDQDAALKLAICDDIGEAAYDNQ 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA LV +L ++ + LQ RY ++M G+ ++ LA H + D + A ++L D
Sbjct: 207 RVAAALVDLLKQLQIE--SGLQTRYDLEMADMTGEDYLHALAAHRYQNDLERTARQLLND 264
Query: 241 FRKGKFGWISLERPP 255
FR G+ G I+LE PP
Sbjct: 265 FRVGQLGAIALEYPP 279
>gi|443323009|ref|ZP_21052021.1| ribosome biogenesis GTP-binding protein YlqF [Gloeocapsa sp. PCC
73106]
gi|442787313|gb|ELR97034.1| ribosome biogenesis GTP-binding protein YlqF [Gloeocapsa sp. PCC
73106]
Length = 278
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 176/255 (69%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EVRDARIPL++ HP + W+G + R+L++NR DMIS R W +F QG +
Sbjct: 25 VDLVLEVRDARIPLASHHPQLRAWIGTKPRLLIINRLDMISQQMRQQWLNWFRHQGEEPY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ G+G +++ A+ + VN KRR +GLLPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 85 FTDAHEGIGIKAVTKAAQLVGVTVNEKRRDRGLLPRPVRAVVIGFPNVGKSALINRLLGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ P+A RPGVTR L+WVR +D+E LD+PG+IP+++ +Q AIKLAIC+DIGE +YD
Sbjct: 145 KIVPSARRPGVTRQLRWVRISEDIELLDAPGVIPVKLENQENAIKLAICEDIGEAAYDSQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+A+ + +L +P AL+ RY +D+ G G+ ++++LA+ + G +A +L D
Sbjct: 205 LIASAFIDLLLELPEAA--ALKTRYNLDVTGMTGEAYLEELAIKRYQGSKERATMAVLND 262
Query: 241 FRKGKFGWISLERPP 255
FR G G I+LE PP
Sbjct: 263 FRTGNLGAIALEFPP 277
>gi|254416738|ref|ZP_05030488.1| GTPase, putative [Coleofasciculus chthonoplastes PCC 7420]
gi|196176478|gb|EDX71492.1| GTPase, putative [Coleofasciculus chthonoplastes PCC 7420]
Length = 285
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 177/261 (67%), Gaps = 6/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP +W+GN+ RILV+NR D+I+ + W ++F +QG
Sbjct: 24 VDVVLEVRDARIPLTTHHPQTAEWVGNKSRILVINRMDLITPKTQQLWTSWFQEQGETPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N Q G G ++++ A+ +N +R+++G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 84 WTNAQQGKGIREVAQAAQQTGVQMNQRRKNRGMQPRPVRAVVIGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +E LD+PG+IP ++ +Q A+KLAICDDIGE SYD
Sbjct: 144 RVVDSARRPGVTRQLRWVRISDQIELLDAPGVIPAKLQNQEDALKLAICDDIGEASYDNQ 203
Query: 181 DVAAILVQMLARIPTVG------ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAA 234
VA V +L R P + ++L NRY +D G G++++Q LA + GD +AA
Sbjct: 204 RVACGFVDLLKRSPDLATGDRTSTSSLHNRYDVDPTGITGESYLQDLAQTRYQGDEERAA 263
Query: 235 FRILTDFRKGKFGWISLERPP 255
++L DFRKG G I+LE PP
Sbjct: 264 RQLLNDFRKGLLGAIALELPP 284
>gi|186684739|ref|YP_001867935.1| ribosomal biogenesis GTPase [Nostoc punctiforme PCC 73102]
gi|186467191|gb|ACC82992.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
Length = 293
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/260 (50%), Positives = 178/260 (68%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EVRDARIPL+T HP + +W+ + R+L+LNR DMI+ R+ W +F +QG
Sbjct: 33 VDVVFEVRDARIPLATHHPQIGEWVEGKTRVLILNRVDMITPQMRSLWIDWFKRQGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++R A+A ++N +R +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 93 FTNAQHGKGIAEVARAAQAAGVELNQRRSDRGMLPRPVRAVVIGFPNVGKSALINRLLGR 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR + LE LD+PG+IP+R+ DQ AA+KLAICDDIGE SYD
Sbjct: 153 RVVESAARPGVTRQLRWVRISEHLELLDAPGVIPLRLEDQDAALKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVGI-----TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV + + V LQ+RY++D G T++ LA H + GD +AA
Sbjct: 213 LVAAALVDLFNYLEAVTTDLLPKKPLQSRYQLDSTSDTGDTYLHALAEHRYKGDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
++LTDFRKG G +SLE PP
Sbjct: 273 QLLTDFRKGLLGEMSLELPP 292
>gi|414078158|ref|YP_006997476.1| ribosome biogenesis GTP-binding protein [Anabaena sp. 90]
gi|413971574|gb|AFW95663.1| ribosome biogenesis GTP-binding protein [Anabaena sp. 90]
Length = 293
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 175/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP++T HP M++W+G + RILVLNR DMI R+ W +F +G
Sbjct: 33 VDVVLEVRDARIPITTNHPQMNEWVGTKTRILVLNRVDMILPQVRSRWIEWFKNRGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A ++N +R +G+LPR VRA ++G+PNVGKS+LINRL+ +
Sbjct: 93 FTNAQHGQGITAITKAAQAAGIELNQRRTDRGMLPRPVRAVVIGFPNVGKSALINRLIGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR L+ LD+PG+IP R+ QAAAIKLAICDDIGE +YD
Sbjct: 153 RVVESAARPGVTRQLRWVRISDQLQLLDAPGVIPARLDSQAAAIKLAICDDIGEAAYDNQ 212
Query: 181 DVAAILVQMLARIPTVGITALQ-----NRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA V +L + +L RY +D G+ ++Q LA H + GD +AA
Sbjct: 213 LIAAAFVDILNELQETHSNSLPPHPLLTRYDLDSIIYTGEEYLQVLAEHRYKGDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
+++TDFRKG FG ISLE PP
Sbjct: 273 QMITDFRKGFFGNISLELPP 292
>gi|119491444|ref|ZP_01623463.1| GTP-binding protein [Lyngbya sp. PCC 8106]
gi|119453439|gb|EAW34602.1| GTP-binding protein [Lyngbya sp. PCC 8106]
Length = 277
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 178/256 (69%), Gaps = 4/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + QW+G++ ++LV+NR DMIS+ + W +F +QG
Sbjct: 24 VDVVLEVRDARIPLTTHHPQVPQWVGSKAKVLVINRMDMISLEVKQQWEDWFMEQGETPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G ++++ A+ + +VN KRRS+G+LPR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 84 FTNSQKGQGVAEVAKAARKVGVEVNQKRRSRGMLPRPVRAVVMGFPNVGKSALINRLLKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR +E LD+PG+IP RI+++ A+KLA+C+DIGE SY+
Sbjct: 144 KVVDSARRAGVTRSLRWVRISDQIELLDAPGVIPARINNEEKALKLAVCEDIGEASYENQ 203
Query: 181 DVAAILVQMLARIPTVGITA-LQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+VAA LV+ L +G+ + L +RY D G+ ++ +LA H + D + A +L
Sbjct: 204 EVAAALVEFLL---DLGLESKLGDRYNFTPDNITGEVYLHQLASHSYQDDIERTARHLLN 260
Query: 240 DFRKGKFGWISLERPP 255
DFRKG G + LE PP
Sbjct: 261 DFRKGLLGALPLELPP 276
>gi|427706982|ref|YP_007049359.1| Ras superfamily GTP-binding protein YlqF [Nostoc sp. PCC 7107]
gi|427359487|gb|AFY42209.1| Ras superfamily GTP-binding protein YlqF [Nostoc sp. PCC 7107]
Length = 294
Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 129/260 (49%), Positives = 176/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRD RIPL+T HP + +W+GN+ RILVLNR DMI+ R+ W +F QG
Sbjct: 33 VDVVLEVRDTRIPLATHHPQIGEWVGNKTRILVLNRLDMITPQVRSLWTDWFRNQGEMPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A ++N KR +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 93 FTNAQQGQGVTAIAKAAQAAGVELNKKRCDRGMLPRPVRAVVIGFPNVGKSALINRLLGR 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR L+ LD+PG+IP R+ +Q AA+KLAICDDIG+ SYD
Sbjct: 153 RVVESAARPGVTRSLRWVRISDQLQLLDAPGVIPSRLDNQDAALKLAICDDIGQASYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA+ LV L I + LQ+RY +D G+++++ LA H +NGD +AA
Sbjct: 213 LVASALVDFLNEIHITANHLLPESPLQSRYGLDSSPYTGESYLEALAEHRYNGDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
++ TD+RKG G I LE PP
Sbjct: 273 QLFTDYRKGLLGTIPLELPP 292
>gi|307151345|ref|YP_003886729.1| ribosome biogenesis GTP-binding protein YlqF [Cyanothece sp. PCC
7822]
gi|306981573|gb|ADN13454.1| ribosome biogenesis GTP-binding protein YlqF [Cyanothece sp. PCC
7822]
Length = 283
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/256 (48%), Positives = 173/256 (67%), Gaps = 2/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + +W+G + RILVLNR DMI + R W +F QG
Sbjct: 26 VDVVLEVVDARIPLASHHPQVPEWIGTKPRILVLNRVDMIPESARQQWLNWFKSQGETAY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G +S+ A+A+ ++N KR +KGLLPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 86 FTNAKQGQGIQAVSKAAQAVGIEINRKRAAKGLLPRPVRAVVIGFPNVGKSALINRLLGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR +E LD+PG+IP ++ DQ AIKLAIC+DIGE +YD
Sbjct: 146 KIVASARRAGVTRQLQWVRISDAIELLDAPGVIPSKLDDQKNAIKLAICEDIGEAAYDNQ 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAAIL+ +L + + L++RY +D G+ F+ +LA + D +AA ++L D
Sbjct: 206 RVAAILIDLLVELDFASV--LKSRYAVDPFSITGEEFIYQLASFRYQEDKERAAVQLLND 263
Query: 241 FRKGKFGWISLERPPR 256
FRKG G I LE PPR
Sbjct: 264 FRKGIMGAIPLEFPPR 279
>gi|443315548|ref|ZP_21045033.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
6406]
gi|442784861|gb|ELR94716.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
6406]
Length = 279
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 174/256 (67%), Gaps = 4/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + W+G + +LV+NR DMIS R AW T+ +QG
Sbjct: 26 VDVVLEVRDARIPLATRHPRIQDWIGEKGHVLVMNRVDMISTEGRAAWETWLRQQGQVPY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G ++ +A+ VN +R S+G+ PR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 86 FANAQQGKGVSAIAHVAQKAGIAVNERRLSRGMRPRPVRAVVIGFPNVGKSALINRLLKR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R G+TR L+W+R LE LD+PGI+P +I DQ AA+KLAICDDIGE SYD
Sbjct: 146 KVVASARRAGITRQLRWIRISDQLELLDAPGILPAQIHDQDAALKLAICDDIGEASYDNQ 205
Query: 181 DVAAILVQMLARIPTVGITA-LQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
VAA LV +L ++G TA L++RY++D + G+TF+ +LA GD + A +L
Sbjct: 206 RVAAALVDLLK---SLGTTAELRDRYRLDPESITGETFMVELAQQRHQGDQARTAHELLN 262
Query: 240 DFRKGKFGWISLERPP 255
DFRKG G + LE PP
Sbjct: 263 DFRKGLLGTLILELPP 278
>gi|434402447|ref|YP_007145332.1| ribosome biogenesis GTP-binding protein YlqF [Cylindrospermum
stagnale PCC 7417]
gi|428256702|gb|AFZ22652.1| ribosome biogenesis GTP-binding protein YlqF [Cylindrospermum
stagnale PCC 7417]
Length = 296
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 180/260 (69%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP +++W+G++KR+LVLNR DMI R+ W +F +QG V
Sbjct: 33 VDVVLEVRDARIPLATNHPQINEWVGDKKRVLVLNRLDMIMPKVRSLWIDWFREQGEFVY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A ++N +RR +G+LPR VRA ++G+PNVGKS+LINRL+ +
Sbjct: 93 FTNAQHGEGITAVAKAAQAAGIELNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLIGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ + RPGVTR L+WVR L+ LD+PG+IP R+ +Q AA+KLAICDDIGE SYD
Sbjct: 153 RVVASEARPGVTRQLRWVRISDQLQLLDAPGVIPARLENQTAALKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV +L I + L++RY++D G ++Q LA H + GD +AA
Sbjct: 213 LVAAALVDLLNEIQYAEPDLLPKLPLKSRYELDSTPYTGDEYLQALAEHRYKGDIERAAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
+++TDFRKG G I L+ PP
Sbjct: 273 QMVTDFRKGLLGEIPLDLPP 292
>gi|428307397|ref|YP_007144222.1| Ras superfamily GTP-binding protein YlqF [Crinalium epipsammum PCC
9333]
gi|428248932|gb|AFZ14712.1| Ras superfamily GTP-binding protein YlqF [Crinalium epipsammum PCC
9333]
Length = 289
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 175/261 (67%), Gaps = 5/261 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + +W+ ++ ++LVLNR DMIS A R W +F + G K
Sbjct: 27 VDVVLEVRDARIPLATRHPQVQEWIASKTKVLVLNRVDMISPAVRQLWTQWFLQHGEKPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G + +S+ A +VN KR +GLLPR VRA ++G+PNVGKS+LINRLLK+
Sbjct: 87 FTNAQQGEGVVAISKAAAEAGVEVNKKRSDRGLLPRPVRAVVIGFPNVGKSALINRLLKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVT+ L+WVR +E LD+PGIIP ++ DQ AA KLAICDDIGE SYD
Sbjct: 147 RVVESARRAGVTKQLRWVRISDQIELLDAPGIIPWKLDDQDAAFKLAICDDIGEASYDNQ 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV +L + + + L++RY++D G+ ++Q LA GD + A
Sbjct: 207 RVAAALVDLLNDLIVTDPDLLPQSPLKSRYELDSAPFSGEEYLQNLADQRNKGDIERTAR 266
Query: 236 RILTDFRKGKFGWISLERPPR 256
++L DFRKG FG I L+ PP+
Sbjct: 267 QMLNDFRKGLFGAIPLDLPPQ 287
>gi|17228240|ref|NP_484788.1| ribosomal biogenesis GTPase [Nostoc sp. PCC 7120]
gi|17130090|dbj|BAB72702.1| all0745 [Nostoc sp. PCC 7120]
Length = 293
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 176/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EVRDARIPL+T HP +D+W+GN+ RILVLNR DMI R+ W YF +G
Sbjct: 33 VDVVFEVRDARIPLATHHPQIDEWVGNKARILVLNRLDMIPPQVRSLWIDYFQNRGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N Q G G + +++ A+A ++N +RR +G+LPRAVRA ++G+PNVGKS+LINRLL +
Sbjct: 93 CTNAQHGQGVVGVAKAAQAAGVELNQRRRDRGMLPRAVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG+IP+++ +Q AA+KLAICDDIG+ SYD
Sbjct: 153 RVVESAARPGVTRQLRWVRISDQLELLDAPGVIPVKLGNQEAAVKLAICDDIGQASYDNQ 212
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA L+ ++ + + + L RY++D G+ ++ LA + GD + A
Sbjct: 213 LVAAALIDLVNSLQEQAGELLPKSPLYTRYELDPTPHTGEGYLHALAEYRHKGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
++LTD+RKG G + LE PP
Sbjct: 273 QLLTDYRKGLLGTLPLELPP 292
>gi|298490204|ref|YP_003720381.1| ribosome biogenesis GTP-binding protein YlqF ['Nostoc azollae'
0708]
gi|298232122|gb|ADI63258.1| ribosome biogenesis GTP-binding protein YlqF ['Nostoc azollae'
0708]
Length = 293
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 173/261 (66%), Gaps = 5/261 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP M++W+G + R+LV+NR DMIS R+ W +F Q
Sbjct: 33 VDVVLEVRDARIPLATNHPQMNEWVGGKSRVLVINRLDMISPQVRSLWVDWFKSQEQVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A ++N +R+ +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FTNAQHGQGITAITKAAQAAGVELNQRRKDRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR L+ LD+PG+IP R+ +QAAA+KLAICDDIGE SYD
Sbjct: 153 RVVESAARPGVTRQLRWVRISDQLQLLDAPGVIPSRMENQAAAVKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA + +L + L +RY++D G+ ++ LA H + D +AA
Sbjct: 213 LVAAAFIDILNELQETHPHLLPSHPLLSRYEVDSIIHTGEAYLHILAEHRYKRDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPPR 256
++TDFRKG G I LE PP
Sbjct: 273 TLITDFRKGLLGTIPLEIPPH 293
>gi|113476888|ref|YP_722949.1| ribosomal biogenesis GTPase [Trichodesmium erythraeum IMS101]
gi|110167936|gb|ABG52476.1| Ras superfamily GTP-binding protein YlqF [Trichodesmium erythraeum
IMS101]
Length = 285
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 176/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + +W+G++ ++LV+NR DMIS W +F G
Sbjct: 24 VDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRIDMISSEVMKIWTEWFEANGEMPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N QLG G L++ + VN++RR +G+LPR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 84 FTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A RPGVT+ L+WVR ++E LD+PG+IP +I ++ AIKLAIC+DIG+ +YD
Sbjct: 144 KVVESARRPGVTKQLRWVRISDEIELLDAPGVIPSQIKNREDAIKLAICEDIGDAAYDNQ 203
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA ++ L + T V + L+ RY+++ G++++ +LA ++ GD + +
Sbjct: 204 QVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNYTGESYLHELANQIYQGDVERTSR 263
Query: 236 RILTDFRKGKFGWISLERPP 255
RIL DFRKG G ISLE PP
Sbjct: 264 RILDDFRKGFLGKISLELPP 283
>gi|440683100|ref|YP_007157895.1| ribosome biogenesis GTP-binding protein YlqF [Anabaena cylindrica
PCC 7122]
gi|428680219|gb|AFZ58985.1| ribosome biogenesis GTP-binding protein YlqF [Anabaena cylindrica
PCC 7122]
Length = 293
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 175/261 (67%), Gaps = 5/261 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EVRDARIPL+T HP M++W+G++ RILV+NR DMI R+ W +F Q
Sbjct: 33 VDVILEVRDARIPLATNHPQMNEWVGDKSRILVINRLDMILPQVRSHWTDWFKNQEQIPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A +N +R+ +G+LPRAVRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FTNAQHGQGITAITKAAQAAGIALNQRRKDRGMLPRAVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ + RPGVTR L+WVR L+ LD+PG+IP R+ +Q AA+KLAICDDIGE SYD
Sbjct: 153 RVVASEARPGVTRQLRWVRISDQLQLLDAPGVIPSRMENQDAAVKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA V ++ ++ L +RY++D G+ ++Q LA H + GD +AA
Sbjct: 213 LIAAAFVDIVNQLQETHPHLLPAHPLLSRYEVDSIIHTGEEYLQVLAEHRYKGDVERAAR 272
Query: 236 RILTDFRKGKFGWISLERPPR 256
++TDFRKG G I LE PP+
Sbjct: 273 TLITDFRKGLLGSIPLEAPPQ 293
>gi|428774581|ref|YP_007166369.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
gi|428688860|gb|AFZ48720.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
Length = 281
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 174/255 (68%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP + W+G++ RIL+LNREDMI+ + W +F +G
Sbjct: 25 VDVVLEVRDARIPLASHHPQLKDWIGDKPRILILNREDMITNTLKQEWQEWFKNEGENPF 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G +++ ++ +VN KR+S+G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKDGKGVKAINKASQGCGVEVNKKRQSRGMLPRPVRAVVIGFPNVGKSALINRLLNR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVTR L+WVR KD+E LD+PGIIP+++ +Q A+KLAIC+DIGE +Y+
Sbjct: 145 KIVASARKAGVTRQLQWVRISKDIELLDAPGIIPLKLENQDDALKLAICEDIGEAAYENQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+VA V +L + T + L+ RY +D G+ F+ KLA + D + A +IL D
Sbjct: 205 EVAQKFVDLLVNLGTEYV--LKERYGLDPLDLTGEEFIFKLAQTKYQNDQERVARQILQD 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G +SLE PP
Sbjct: 263 FRKGYLGKVSLEYPP 277
>gi|427730290|ref|YP_007076527.1| ribosome biogenesis GTP-binding protein YlqF [Nostoc sp. PCC 7524]
gi|427366209|gb|AFY48930.1| ribosome biogenesis GTP-binding protein YlqF [Nostoc sp. PCC 7524]
Length = 294
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 175/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EVRDARIPL+T HP +D W+GN+ R+LVLNR DMI R+ W YF +G +
Sbjct: 33 VDVVFEVRDARIPLATHHPQIDDWVGNKTRVLVLNRLDMIPPQVRSLWVDYFQNRGEEPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+A ++N +RR +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FTNAQHGQGITAVAKAAQAAGVELNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG+IP ++ +Q AA+KLAICDDIG+ SYD
Sbjct: 153 RVVESAARPGVTRQLRWVRISDQLELLDAPGVIPAKLGNQEAAVKLAICDDIGQASYDNQ 212
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV +L + + + L +RY++D G+ ++ LA H GD + A
Sbjct: 213 LVAAALVDLLNSLQEQAGELLPKSPLYSRYQLDPIPHTGEAYLHALAQHRNQGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
++LTD+RKG G + LE PP
Sbjct: 273 QLLTDYRKGLLGTMPLELPP 292
>gi|428769845|ref|YP_007161635.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
gi|428684124|gb|AFZ53591.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
Length = 280
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 176/255 (69%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP + QW+G++ R+LVLNREDMIS + R W +F QG
Sbjct: 25 VDVVLEVRDARIPLASHHPQLKQWIGDKPRLLVLNREDMISDSLRKEWQEWFGAQGEIPF 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G + + ++++ VN +RRS+G+LPR VRA ++G+PNVGKS+LINRLL+R
Sbjct: 85 FTNAKDGKGVKAVKKASQSMEKQVNERRRSRGMLPRPVRAVVIGFPNVGKSALINRLLQR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVT+ L+WVR LE LD+PG+IP ++ +Q A+KLAIC+DIGE +YD
Sbjct: 145 KIVASARKAGVTKQLQWVRISDQLELLDAPGVIPWKLENQEDALKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA V +L ++ + + L++RY +D G+ F+ +LA + D + A ++L D
Sbjct: 205 LVAADFVDLLVKLGSDEV--LKSRYGLDPLEMTGEEFIYELAARKYKNDKERVARQLLQD 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G +SLE PP
Sbjct: 263 FRKGYLGSVSLEYPP 277
>gi|428312494|ref|YP_007123471.1| Ras superfamily GTP-binding protein YlqF [Microcoleus sp. PCC 7113]
gi|428254106|gb|AFZ20065.1| Ras superfamily GTP-binding protein YlqF [Microcoleus sp. PCC 7113]
Length = 290
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 175/261 (67%), Gaps = 6/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP + QW+G++ ++LVLNR DMI+ A R W ++F +QG
Sbjct: 27 VDVVLEVRDARIPLSTHHPQIPQWVGSKAKVLVLNRLDMITPAVRQLWISWFQQQGETAY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G ++S+ ++ +N +RR +G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 87 FTNAQQGKGIREVSQATQSAGVQMNQRRRDRGMQPRPVRAVVIGFPNVGKSALINRLLGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG+IP + +Q AIKLAICDDIG+ SYD
Sbjct: 147 RVVDSARRPGVTRQLRWVRISDQLELLDAPGVIPANLKNQQKAIKLAICDDIGDASYDNQ 206
Query: 181 DVAAILVQMLARIPTVGI------TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAA 234
+AA LV++L + + + L+ RY++D G+ +++ LA + GD + A
Sbjct: 207 RIAADLVELLQDLEAMAYGGLIPASPLKTRYELDPTPFSGEDYLRALADYRHQGDIERTA 266
Query: 235 FRILTDFRKGKFGWISLERPP 255
++L DFRKG G I LE PP
Sbjct: 267 RQLLHDFRKGVLGPIPLELPP 287
>gi|427737499|ref|YP_007057043.1| ribosome biogenesis GTP-binding protein YlqF [Rivularia sp. PCC
7116]
gi|427372540|gb|AFY56496.1| ribosome biogenesis GTP-binding protein YlqF [Rivularia sp. PCC
7116]
Length = 296
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 169/259 (65%), Gaps = 5/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP ST HP + +W+G++ R+L++NR DMIS R W YF I
Sbjct: 33 VDVVLEVRDARIPSSTHHPQVSEWIGDKARLLIINRLDMISSEARELWTDYFRANNEVPI 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G +++ A++ S VN +R+ + +LPR +RA ++G+PNVGKS+LINRLL +
Sbjct: 93 FTNAKQGKGVNGVAKAAQSAGSQVNERRKEREMLPRPIRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR K+L LD+PG+IP+++ +Q AA+KLAICDDIGE SYD
Sbjct: 153 RVVQSAARPGVTRSLRWVRISKELNLLDAPGVIPLKLENQEAALKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVGITALQN-----RYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA V ++ + L RYK++ G+ ++ LA H + GD ++A
Sbjct: 213 KVAAAFVDIVGEMQETAPQILPENPFLLRYKLESTSYTGEEYLFALAEHKYQGDVERSAR 272
Query: 236 RILTDFRKGKFGWISLERP 254
ILTD+RKG G LE P
Sbjct: 273 TILTDYRKGNLGQFPLEVP 291
>gi|428206140|ref|YP_007090493.1| Ras superfamily GTP-binding protein YlqF [Chroococcidiopsis
thermalis PCC 7203]
gi|428008061|gb|AFY86624.1| Ras superfamily GTP-binding protein YlqF [Chroococcidiopsis
thermalis PCC 7203]
Length = 285
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/259 (48%), Positives = 173/259 (66%), Gaps = 4/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + +W+GN+ R+L+LNR D I A R W +F +G V
Sbjct: 26 VDVVLEVRDARIPLATHHPRVPEWVGNKTRVLILNRVDAIPPAVRQLWQQWFKTRGETVY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G ++ ++A+ ++N +R+++GLL R VRA +G+PNVGKS+LINRLLKR
Sbjct: 86 FTNAKDGNGVGQVLQVAQRAGDEINQRRKNRGLLARPVRAAAIGFPNVGKSALINRLLKR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ + RPGVTR L+WVR +E LD+PG+IP ++ DQAAAIKLAICDDIG+ +YD
Sbjct: 146 RIVVSEARPGVTRQLRWVRISDRVELLDAPGVIPTKLEDQAAAIKLAICDDIGDAAYDSY 205
Query: 181 DVAAILVQML----ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
VA I + +L A P + +RYKID G G+ FV +L+ GD + A +
Sbjct: 206 QVAVIFIDLLQDLMATAPELMPDNPLSRYKIDSLGMTGEEFVYELSAKRDRGDLERTARQ 265
Query: 237 ILTDFRKGKFGWISLERPP 255
IL DFRKG G + LE PP
Sbjct: 266 ILIDFRKGILGTVPLELPP 284
>gi|428213287|ref|YP_007086431.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoria
acuminata PCC 6304]
gi|428001668|gb|AFY82511.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoria
acuminata PCC 6304]
Length = 287
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 172/260 (66%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP + QW+G++ R+L++NR D I R+ W +F +QG
Sbjct: 27 VDVVLEVRDARIPLSTHHPQVPQWVGSKSRVLIINRVDTILPPLRDRWHLWFQRQGETPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +S+ AK +N +R +G+ PRAVRA ++G+PNVGKS+LINRL+ R
Sbjct: 87 FTNAQDGTGIKAISKAAKEAGIALNQRRLDRGMRPRAVRAVVIGFPNVGKSALINRLVGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVT+ L+WVR +LE LD+PG+IP ++ DQ AA+KLAICDDIGE +YD
Sbjct: 147 RVVESARRAGVTKQLRWVRISDELELLDAPGVIPSKLEDQDAALKLAICDDIGEAAYDNQ 206
Query: 181 DVAAILVQMLARIPTVGI-----TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA V M+ I +G AL++RYK+D G+ F+ + A + GD +AA
Sbjct: 207 RVAWAFVDMVKDIEEIGTGWVPPDALRSRYKLDPRTMTGEDFLHRFAESRYEGDVERAAR 266
Query: 236 RILTDFRKGKFGWISLERPP 255
+IL DFRKG G I LE PP
Sbjct: 267 QILNDFRKGLLGKIPLELPP 286
>gi|307105935|gb|EFN54182.1| hypothetical protein CHLNCDRAFT_36060 [Chlorella variabilis]
Length = 287
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EVRD R P+ST HPL+ +W+G + R+L++NR+DM++ ADR AW +FA++G V
Sbjct: 23 VDIVLEVRDGRCPMSTRHPLIPEWIGTKPRVLLINRKDMVAEADRAAWTRFFAQRGHAVT 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++NG +G G K+ L+ A+ + +N KR ++GL PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 83 WTNGSMGDGVGKVMELSAAVGAKLNAKRLARGLRPRPVRAVVIGFPNVGKSALINRLLGR 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +AP+PGVTR L+W R G D++ LD+PGIIPM DQ AA +LA+C+DIGE +Y +
Sbjct: 143 RVADSAPKPGVTRSLRWARIGGDIDLLDAPGIIPMSFRDQVAAQRLAMCNDIGEAAYVDS 202
Query: 181 DVAAILVQMLARIPTVGITA--LQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
VAA ++ + +P A + RYK+ ++ + +V L LFN + +A RIL
Sbjct: 203 LVAAAFLETVRGLPAAPQIARRISERYKLRVEDYQEEEYVHALGDRLFNSEPERAGQRIL 262
Query: 239 TDFRKGKFGWISLERPPR 256
DFR G I LE PP+
Sbjct: 263 KDFRSLALGPICLELPPQ 280
>gi|282897399|ref|ZP_06305401.1| GTP-binding protein [Raphidiopsis brookii D9]
gi|281198051|gb|EFA72945.1| GTP-binding protein [Raphidiopsis brookii D9]
Length = 296
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 122/259 (47%), Positives = 172/259 (66%), Gaps = 5/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP + +W+GN+ R+LV+NR DMI ++ W+ + KQG
Sbjct: 33 VDVVLEVRDARIPLSTHHPQVKEWIGNKSRVLVINRLDMILPQVKSIWSEWLKKQGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+ +++N +R+ +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FANAQQGQGITAIAKAAQIAGTELNERRKQRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WV+ + LE LD+PGIIP R+ DQ AA+KLAICDDIGE SYD
Sbjct: 153 RVVESAARPGVTRQLRWVKISEHLELLDAPGIIPSRLEDQQAAVKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA V M+ + L +RY +D G+ +++ LA + GD + A
Sbjct: 213 LIAAAFVDMVNQFQETSPHLLPPHPLLSRYGVDSIIHTGEAYLEVLAASRYQGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERP 254
I++DFRKG G I LE P
Sbjct: 273 TIISDFRKGLLGAIVLEVP 291
>gi|145344505|ref|XP_001416772.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576998|gb|ABO95065.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 369
Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 176/259 (67%), Gaps = 4/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKV 59
+D V+EVRDAR+PL+T+HP + W G++ RI+VLNR DM+S +R W ++ ++G T+V
Sbjct: 106 VDAVLEVRDARLPLATSHPEIASWCGDKMRIVVLNRADMVSDGERARWVSHLKREGETRV 165
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ ++ + G GT ++ +A ++ ++N KR +KGLLPR VRA +VGYPNVGKS+LINRL+
Sbjct: 166 VLTDARAGKGTRRVKEMAMEMSEEINAKRAAKGLLPRPVRAAVVGYPNVGKSALINRLVG 225
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ C +APRPGVTR L+WVR G DL+ LD+PG++P R+ DQ AA +LA+ +DIGE SY
Sbjct: 226 KAACASAPRPGVTRDLRWVRIGGDLDLLDAPGVLPARMHDQRAASRLAMANDIGEASYIA 285
Query: 180 ADVAAILVQMLARIPTVGI--TALQNRYKID-MDGTCGKTFVQKLALHLFNGDTHQAAFR 236
+ +AA +++ L R+PT + R+K + +D G+ FVQ A GD +A R
Sbjct: 286 SSMAAAMIEELKRLPTWKSIRPGIIKRFKDERVDDMTGEEFVQYFADKTCGGDVERAGTR 345
Query: 237 ILTDFRKGKFGWISLERPP 255
+L DFR G G LE PP
Sbjct: 346 MLNDFRGGHIGNFCLELPP 364
>gi|119509302|ref|ZP_01628452.1| hypothetical protein N9414_15165 [Nodularia spumigena CCY9414]
gi|119466144|gb|EAW47031.1| hypothetical protein N9414_15165 [Nodularia spumigena CCY9414]
Length = 294
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 125/261 (47%), Positives = 177/261 (67%), Gaps = 5/261 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRD RIPL+T HP +D+W+G++ R+LVLNR DMIS R+ W +F + G
Sbjct: 33 VDVVLEVRDGRIPLATHHPQIDEWVGDKARVLVLNRLDMISPQVRSLWVDWFKRHGEIAY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N + G G +++ A+A +N +RR +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 STNAKQGQGITAIAKAAQAAGVKLNQRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR ++LE LD+PG+IP+R+ +Q AAIKLAICDDIG+ SYD
Sbjct: 153 RVVESAARPGVTRSLRWVRISEELELLDAPGVIPLRMGNQEAAIKLAICDDIGQASYDNQ 212
Query: 181 DVAAILVQMLARI-PTVG----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA+ + +L + T G + L RY++D G++++ LA H + GD + A
Sbjct: 213 LVASAFIDLLNELQETAGNLLPPSPLYTRYQLDPVPYTGESYLHALAEHRYKGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERPPR 256
+LTDFRKG G I LE PP
Sbjct: 273 HLLTDFRKGLLGNIPLELPPH 293
>gi|282901743|ref|ZP_06309658.1| GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
gi|281193360|gb|EFA68342.1| GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
Length = 296
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 172/259 (66%), Gaps = 5/259 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EVRDARIPLST HP + +W+GN+ R+LV+NR DMI ++ W+ + KQG
Sbjct: 33 VDVILEVRDARIPLSTHHPQVKEWIGNKSRVLVINRLDMILPQVKSIWSEWLKKQGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+ +++N +R+ +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 93 FANAQQGQGITAIAKAAQIAGTELNERRKQRGMLPRPVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WV+ + LE LD+PGIIP R+ DQ AA+KLAICDDIGE SYD
Sbjct: 153 RVVESAARPGVTRQLRWVKISEHLELLDAPGIIPSRLEDQQAAVKLAICDDIGEASYDNQ 212
Query: 181 DVAAILVQMLARIPTVG-----ITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA V M+ + L +RY +D G+ +++ LA + GD + A
Sbjct: 213 LIAAAFVDMVNQFQETSPHLLPPHPLLSRYGVDSIIHTGEAYLEVLAASRYQGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERP 254
I++DFRKG G I LE P
Sbjct: 273 TIISDFRKGLLGAIVLEVP 291
>gi|425449737|ref|ZP_18829572.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 7941]
gi|389769738|emb|CCI05506.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 7941]
Length = 279
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELHYEGL--LQSRYGLNTPDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGVIPLELPP 277
>gi|425473004|ref|ZP_18851750.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9701]
gi|389880715|emb|CCI38591.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9701]
Length = 279
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQLDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQIRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELHYEGL--LQSRYGLNTLDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|427713259|ref|YP_007061883.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
6312]
gi|427377388|gb|AFY61340.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
6312]
Length = 302
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 170/255 (66%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP + W+G + R+L+LNR DMIS +R W +F Q
Sbjct: 48 VDVVLEVRDARIPLASFHPQIPAWIGTKPRLLILNRLDMISPLEREQWQAWFRSQAESPY 107
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+NGQ G G + + + A+A VN +R+ +G+ PR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 108 FANGQTGDGVVAIFKAAQAAGVTVNERRKLRGMNPRPVRAVVLGFPNVGKSALINRLLKR 167
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A RPGVTR L+W+R LE LD+PG++P + DQ AAIKLAICDDIGE +YD
Sbjct: 168 KIAASAARPGVTRQLRWIRISDQLELLDAPGVLPANLKDQNAAIKLAICDDIGEAAYDNQ 227
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA L+ +L + L NRY++ +D G+ ++ LA+ F D +A ++L D
Sbjct: 228 RVAAALIDLLQDLNQA--PRLLNRYQVGLDERSGEEYIVYLAIQRFKNDHERAGRQLLQD 285
Query: 241 FRKGKFGWISLERPP 255
FR+ G I LE+PP
Sbjct: 286 FRRLALGPICLEKPP 300
>gi|425436382|ref|ZP_18816818.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9432]
gi|440752137|ref|ZP_20931340.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa TAIHU98]
gi|389678912|emb|CCH92274.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9432]
gi|440176630|gb|ELP55903.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa TAIHU98]
Length = 279
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELQYEGL--LQSRYGLNTLDITGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|425446401|ref|ZP_18826405.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9443]
gi|389733392|emb|CCI02838.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9443]
Length = 279
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQIRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELQYEGL--LQSRYGLNTLDMTGEDFIEKLADLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|425461781|ref|ZP_18841255.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9808]
gi|389825303|emb|CCI25027.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9808]
Length = 279
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELHYEGL--LQSRYGLNTLDITGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|443648941|ref|ZP_21130123.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa DIANCHI905]
gi|159026387|emb|CAO90485.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335054|gb|ELS49537.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa DIANCHI905]
Length = 279
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLRELQYEGL--LQSRYGLNTLDITGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|422304696|ref|ZP_16392037.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
gi|389790101|emb|CCI13969.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLDNQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLVELNYEGL--LQSRYGLNTLDMTGEDFIEKLADLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|425457270|ref|ZP_18836976.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9807]
gi|389801423|emb|CCI19422.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9807]
Length = 279
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGKTVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELQYEGL--LQSRYGLNTLDITGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|443310963|ref|ZP_21040600.1| ribosome biogenesis GTP-binding protein YlqF [Synechocystis sp. PCC
7509]
gi|442779023|gb|ELR89279.1| ribosome biogenesis GTP-binding protein YlqF [Synechocystis sp. PCC
7509]
Length = 288
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 173/261 (66%), Gaps = 5/261 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRD RIPL+T HP +W+G ++R+LVLNR DMIS A + AW +F +QG +
Sbjct: 27 VDVVLEVRDTRIPLATCHPQAQEWIGTKERVLVLNRLDMISPAAQQAWMRWFREQGEEPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G +++ A+ ++N +R+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 87 FTDAQAGKGITAVAKAAQKAGIELNERRQLRGMLPRPVRAVVIGFPNVGKSALINRLLNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVTR L+WVR LE LD+PGIIP+++++Q A KLAICDDIG+ SYD
Sbjct: 147 RVVESAARAGVTRQLRWVRISDQLELLDAPGIIPIKLNNQVNAFKLAICDDIGDASYDNQ 206
Query: 181 DVAAILVQMLARIPTVGITALQN-----RYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA +L+++L ++ L N RY +D + ++ LA GD + A
Sbjct: 207 RVATVLIELLQQLAINSPVFLPNNPLLTRYDLDFAEMTAEDYLIALAQKRHQGDIERTAR 266
Query: 236 RILTDFRKGKFGWISLERPPR 256
++LTDFRKG G I+LE PP
Sbjct: 267 QMLTDFRKGALGAIALEAPPE 287
>gi|166364230|ref|YP_001656503.1| ribosomal biogenesis GTPase [Microcystis aeruginosa NIES-843]
gi|166086603|dbj|BAG01311.1| GTPase family protein [Microcystis aeruginosa NIES-843]
Length = 279
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 171/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAHQQWVTWFKSQGKTVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLVELNYEGL--LQSRYGLNTLDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|425467123|ref|ZP_18846407.1| GTPase family protein [Microcystis aeruginosa PCC 9809]
gi|389830197|emb|CCI28014.1| GTPase family protein [Microcystis aeruginosa PCC 9809]
Length = 279
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 171/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAHQQWVTWFKSQGKTVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLIELHYEGL--LQSRYGLNTLDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|255083617|ref|XP_002508383.1| predicted protein [Micromonas sp. RCC299]
gi|226523660|gb|ACO69641.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 178/267 (66%), Gaps = 11/267 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK-V 59
+D V+EVRD RIPL+TTHP + W+GN+ R+LVLNR DM++ A+R+ W ++F K+G K V
Sbjct: 40 VDAVVEVRDIRIPLATTHPDIPDWIGNKLRVLVLNRADMVTDAERSRWVSWFKKRGEKHV 99
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ ++ + G G ++ +A ++A +VN KR +KGLLPR VR ++GYPNVGKS+LINRL
Sbjct: 100 VLTDAKTGKGVKRVMEVASSVAKEVNEKRVAKGLLPRPVRTAVIGYPNVGKSALINRLTN 159
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ C +APRPGVTR L+WVR G DL+ LDSPG++P R++DQ AA +LA+ +DIGE SY
Sbjct: 160 SKTCASAPRPGVTRDLRWVRVGGDLDLLDSPGVLPGRLADQTAANRLAMANDIGEASYLA 219
Query: 180 ADVAAILVQMLARIPTV-----GITAL-QNRYKI----DMDGTCGKTFVQKLALHLFNGD 229
+ VAA L++ + R G+ + + RYK D+D G+ V LA + D
Sbjct: 220 SSVAARLIEEMKRHERWSSRRGGLKEIVEKRYKFGPDDDIDEMTGEDVVCYLAAKAQDDD 279
Query: 230 THQAAFRILTDFRKGKFGWISLERPPR 256
+A RIL DFRK G +LE PPR
Sbjct: 280 LERAGTRILNDFRKTALGSFALELPPR 306
>gi|434389518|ref|YP_007100129.1| ribosome biogenesis GTP-binding protein YlqF [Chamaesiphon minutus
PCC 6605]
gi|428020508|gb|AFY96602.1| ribosome biogenesis GTP-binding protein YlqF [Chamaesiphon minutus
PCC 6605]
Length = 283
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 168/256 (65%), Gaps = 2/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP +T HPL+ W+GN+ ++L++NR D I R WA +F QG +
Sbjct: 27 VDVVLEVRDARIPFATYHPLLATWIGNKHKLLIVNRVDAIPPTVRELWAEWFVSQGEQPF 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +S+ A+++ +N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL +
Sbjct: 87 FANAQQGTGVAAISKAAQSVGVAINQKRKERGMLPRPVRAVVIGFPNVGKSALINRLLNK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVT+ L+WVR LE LD+PGIIP R+ DQAAA+KLAICDDIGE YD
Sbjct: 147 RVVESARRAGVTKSLRWVRISDRLELLDAPGIIPGRLDDQAAAVKLAICDDIGEAGYDRQ 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
++A L+++ + V ++RY G+ ++ +LA + GD + + IL D
Sbjct: 207 RISAALIELCQELGYV--AGFEDRYGSIPTTLSGEEYLHQLANEKYRGDLERTSHLILND 264
Query: 241 FRKGKFGWISLERPPR 256
FR G G I LE PP+
Sbjct: 265 FRTGVLGSIPLELPPK 280
>gi|218438564|ref|YP_002376893.1| ribosomal biogenesis GTPase [Cyanothece sp. PCC 7424]
gi|218171292|gb|ACK70025.1| GTP-binding protein HSR1-related [Cyanothece sp. PCC 7424]
Length = 281
Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 176/256 (68%), Gaps = 4/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + +W+G + RILVLNR DMI + +N W +F QG
Sbjct: 26 VDVVLEVLDARIPLASHHPQVGEWIGTKPRILVLNRVDMIPASVQNQWLKWFKSQGETAY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G +S+ A+A+ ++N KR +GLLPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 86 FTNAKQGQGIQAVSKAAQAVGVEMNRKRGERGLLPRPVRAVVIGFPNVGKSALINRLLGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR +E LD+PG+IP ++ DQ AIKLAIC+DIGE +YD
Sbjct: 146 KIVASARRAGVTRQLRWVRISDAIELLDAPGVIPSKLEDQNDAIKLAICEDIGEAAYDNQ 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-MDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+A+ L+ +L ++ + L++RY +D ++GT G+ +V KLA + D +AA ++L
Sbjct: 206 RIASSLIDLLVKLDFFSV--LKSRYGVDPLEGT-GEDYVYKLAQTRYQEDKERAAVQLLN 262
Query: 240 DFRKGKFGWISLERPP 255
DFRKG G I LE PP
Sbjct: 263 DFRKGFMGAIPLEFPP 278
>gi|425441787|ref|ZP_18822054.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9717]
gi|389717396|emb|CCH98497.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9717]
Length = 279
Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGKTVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + ++N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+AA V +L + G+ L++RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIAAAFVDLLRELQYEGL--LESRYGLNTLDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|86608130|ref|YP_476892.1| ribosomal biogenesis GTPase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556672|gb|ABD01629.1| GTPase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 283
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/256 (48%), Positives = 164/256 (64%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIEV DARIPL++ HP + +WLG + R+L LNR D I D AW YF +QG V
Sbjct: 27 VDAVIEVLDARIPLASRHPELGRWLGEKPRLLALNRADCIEAGDLKAWQEYFLRQGIPVY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+NG+ G G +L + L VN +R+ +G+ PRAVRA +VG+PNVGKS+L+NRLL R
Sbjct: 87 PTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMRPRAVRAVVVGFPNVGKSALLNRLLGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +A RPGVTR L+WVR G +L+ LDSPGIIP + DQ AA LAICDDIGE +YD
Sbjct: 147 RAAESAARPGVTRQLRWVRLGGELDLLDSPGIIPPSLPDQQAASLLAICDDIGEAAYDPE 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA + + R+ + LQ RY G VQ+LA + GD +AA ++L D
Sbjct: 207 RVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPGGAAVQELAERRYQGDPQRAARQVLND 266
Query: 241 FRKGKFGWISLERPPR 256
+RKG G ++LE PP+
Sbjct: 267 YRKGLLGPLALELPPK 282
>gi|390440761|ref|ZP_10228966.1| GTPase family protein [Microcystis sp. T1-4]
gi|389835929|emb|CCI33092.1| GTPase family protein [Microcystis sp. T1-4]
Length = 279
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 170/255 (66%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP +D W+GN+ R+L+LNR DMI + + W T+F QG V
Sbjct: 25 VDVVLEVRDARIPLASHHPQVDDWIGNKPRLLILNRLDMIPESAQQQWVTWFKSQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G + + A+ + +N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGERVKAIIKAAEKIGDAINQKRQLRGMLPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR LE LD+PG+IP R+ +Q A+KLAIC+DIG+ YD
Sbjct: 145 KVVASARRAGVTRQLQWVRISDTLELLDAPGVIPSRLDNQKDAVKLAICEDIGDAGYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+ A V +L + G+ LQ+RY ++ G+ F++KLA + D +AA ++L D
Sbjct: 205 RIGAAFVDLLVELNYEGL--LQSRYGLNTLDMTGEDFIEKLANLKYQEDKERAAMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIIGAIPLELPP 277
>gi|303287344|ref|XP_003062961.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455597|gb|EEH52900.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 337
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 170/259 (65%), Gaps = 6/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK-V 59
+D V+EVRD RIPL+TTHP + W+G + R+LVLNR DM+S +R W +F K G K V
Sbjct: 32 VDAVVEVRDLRIPLATTHPEIPNWIGGKLRVLVLNRADMVSDGERQRWVAWFKKNGEKHV 91
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ ++ + G G ++ +A ++ +VN KR +KGL+PR VR I+GYPNVGKS+LINRL
Sbjct: 92 VLTDAKSGKGVNRVKEVALLVSEEVNAKRAAKGLMPRPVRTAIIGYPNVGKSALINRLTN 151
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ C +APRPGVTR L+WVR G DL+ LDSPG++P R++DQAAA +LA+ +DIGE SY
Sbjct: 152 SKACASAPRPGVTRNLRWVRVGGDLDLLDSPGVLPPRLADQAAATRLAMANDIGEASYLS 211
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNGDTHQAAFRI 237
++VAA L + +P + R+K+D D G+ FV +A + + D +A RI
Sbjct: 212 SNVAAQLFDEMKTLPQ---WTTRKRFKLDAIPDAMTGEDFVIAVAEKMSSDDLERAGTRI 268
Query: 238 LTDFRKGKFGWISLERPPR 256
L DFR G G LE PR
Sbjct: 269 LIDFRSGALGAFCLEPAPR 287
>gi|75910843|ref|YP_325139.1| ribosomal biogenesis GTPase [Anabaena variabilis ATCC 29413]
gi|75704568|gb|ABA24244.1| Ras superfamily GTP-binding protein YlqF [Anabaena variabilis ATCC
29413]
Length = 293
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 175/260 (67%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EVRDARIPL+T HP +D+W+GN+ RILVLNR DMI R+ W YF +G
Sbjct: 33 VDVVFEVRDARIPLATHHPQIDEWVGNKARILVLNRLDMIPPQVRSLWIDYFQNRGEVPY 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N Q G G +++ A+A ++N +RR +G+LPRAVRA ++G+PNVGKS+LINRLL +
Sbjct: 93 CTNAQHGQGVAGVAKAAQAAGVELNQRRRDRGMLPRAVRAVVIGFPNVGKSALINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG+IP+++ +Q AA+KLAICDDIG+ SYD
Sbjct: 153 RVVESAARPGVTRQLRWVRISDQLELLDAPGVIPVKLGNQEAAVKLAICDDIGQASYDNQ 212
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA L+ ++ + + + L RY++D G+ ++ LA + GD + A
Sbjct: 213 LVAAALIDIVNSLQEQAGELLPRSPLYARYELDPTPHTGEGYLHALAEYRHKGDVERTAR 272
Query: 236 RILTDFRKGKFGWISLERPP 255
++LTD+RKG G + LE PP
Sbjct: 273 QLLTDYRKGLLGTLPLELPP 292
>gi|254424502|ref|ZP_05038220.1| GTPase, putative [Synechococcus sp. PCC 7335]
gi|196191991|gb|EDX86955.1| GTPase, putative [Synechococcus sp. PCC 7335]
Length = 296
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 184/267 (68%), Gaps = 13/267 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP +D+WLG++KR+LV+NR DMI+ R+ W +F G
Sbjct: 27 VDVVLEVRDARIPLATLHPDLDRWLGDKKRVLVVNRVDMIAPQMRDRWQAWFKANGQTAY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N G G ++++ A+ + +N +R+ +G+ R VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 YTNANQGKGVGQIAKAAQQAGAAMNQRRKDRGMRSRPVRAVVIGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + G+TR L+WVR ++E LD+PGIIP +++DQ AA+KLAICDDIGE +YD
Sbjct: 147 KIVESARKAGITRQLRWVRISDEIELLDAPGIIPAQLTDQKAALKLAICDDIGEAAYDTQ 206
Query: 181 DVAAILVQML------------ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG 228
VAA V++L A++P + + ALQ+RY++D G+T++ +LA H F
Sbjct: 207 RVAAAFVELLKELDQDEIGAGTAKLP-LRMQALQSRYELDPANCTGETYLFRLAEHKFQN 265
Query: 229 DTHQAAFRILTDFRKGKFGWISLERPP 255
+AA ++LT+FRKG G +SLE PP
Sbjct: 266 SQERAARKLLTEFRKGVLGNLSLELPP 292
>gi|22299050|ref|NP_682297.1| ribosomal biogenesis GTPase [Thermosynechococcus elongatus BP-1]
gi|22295232|dbj|BAC09059.1| tlr1507 [Thermosynechococcus elongatus BP-1]
Length = 285
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 175/256 (68%), Gaps = 3/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ EVRDARIPL++ HP + QW ++R+LVLN D IS DR W T+F QG V
Sbjct: 26 VDVIFEVRDARIPLASCHPQIRQWASGKQRLLVLNGMDRISDRDRQQWLTWFETQGETVF 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +L + A + +N +R+ +G+ RAVRA ++G+PNVGKS+LINRLL++
Sbjct: 86 FTNAQRGEGIRRLEQAAVRAGAAINQRRQQRGMQVRAVRAVVLGFPNVGKSALINRLLQQ 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG++PM +Q AA+KLAICDDIG+ +YD
Sbjct: 146 RVVESAARPGVTRQLRWVRLSPVLELLDAPGVLPMNFKNQEAAVKLAICDDIGQAAYDPC 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VA +LV+++ ++ L++RY + + T G+T++ LA ++GD +AA ++L D
Sbjct: 206 RVAPMLVEIMQQLGYA--ERLRDRYGLALTDT-GETYLYDLAARRYHGDLERAARQLLQD 262
Query: 241 FRKGKFGWISLERPPR 256
+R+G G I+LE PP+
Sbjct: 263 YRRGYLGAIALEHPPQ 278
>gi|384247552|gb|EIE21038.1| GTPase [Coccomyxa subellipsoidea C-169]
Length = 310
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 177/258 (68%), Gaps = 3/258 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP+ST H + +W G + R+L+LNR DMIS +DR+AW +F +Q T V+
Sbjct: 51 VDVVLEVRDARIPMSTCHSQLAKWCGTKPRLLLLNRVDMISESDRSAWTRHFKQQKTPVL 110
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++G G+G+ ++ + A + +N KRR++GL+PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 111 WTDGVSGLGSGQVRKAALDASVAINAKRRNRGLMPRPVRAVMIGFPNVGKSALINRLLNR 170
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+C +AP+PGVTR L+W R G DL+ LD+PG+IP +DQ AA +LA+C+DIGE SY +
Sbjct: 171 RVCRSAPKPGVTRDLRWNRLGSDLDLLDAPGVIPASFTDQQAAQRLAVCNDIGEASYIDS 230
Query: 181 DVAAILVQMLARIPTVGIT--ALQNRYKIDM-DGTCGKTFVQKLALHLFNGDTHQAAFRI 237
+AA L+ L +P+ L RY ++ + + ++ +A G+ +AA R+
Sbjct: 231 LIAASLLDTLTALPSARSLRRRLAQRYDVEFSEDMTAEDYIAAVAEAKCQGEDERAAQRM 290
Query: 238 LTDFRKGKFGWISLERPP 255
L DFR G G I+LE PP
Sbjct: 291 LKDFRVGALGRIALELPP 308
>gi|428318775|ref|YP_007116657.1| Ras superfamily GTP-binding protein YlqF [Oscillatoria
nigro-viridis PCC 7112]
gi|428242455|gb|AFZ08241.1| Ras superfamily GTP-binding protein YlqF [Oscillatoria
nigro-viridis PCC 7112]
Length = 288
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 172/260 (66%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP M W+G + R+LV+NR DMI+ R AW T+F QG
Sbjct: 24 VDVVLEVRDARIPLATYHPQMPSWVGGKARVLVINRIDMITPRAREAWETWFETQGETAY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G ++ + +N +R +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 84 FTNAEHGQGVDAVADAVQNAGVQLNKRRFDRGMLPRPVRAVVMGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVT+ L+W+R ++E LD+PG+IP RI++Q A+KLAIC+DIGE +YD
Sbjct: 144 RVVDSARRAGVTKSLRWIRISDEIELLDAPGVIPTRINNQENALKLAICEDIGEAAYDNQ 203
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA +V +L + + ++ ++RYK+D + G+ ++ ++A + GD + A
Sbjct: 204 VVAAAMVDLLQGLEAADDTLISLSGFKSRYKLDAASSNGEDYLHEVAKDRYKGDVERTAR 263
Query: 236 RILTDFRKGKFGWISLERPP 255
++L DFR G G ++LE PP
Sbjct: 264 QMLNDFRTGVLGQLTLELPP 283
>gi|334119114|ref|ZP_08493201.1| ribosome biogenesis GTP-binding protein YlqF [Microcoleus vaginatus
FGP-2]
gi|333458585|gb|EGK87202.1| ribosome biogenesis GTP-binding protein YlqF [Microcoleus vaginatus
FGP-2]
Length = 284
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 172/260 (66%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP M W+G + R+LV+NR DMI+ R AW T+F QG
Sbjct: 24 VDVVLEVRDARIPLATFHPQMPSWVGGKARVLVINRMDMITPRSREAWETWFEAQGETAY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G ++ + +N +R +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 84 FTNAEHGHGVDAVADAVQNAGVQLNQRRFDRGMLPRPVRAVVMGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVT+ L+W+R ++E LD+PG+IP RI++Q A+KLAIC+DIGE +YD
Sbjct: 144 RVVDSARRAGVTKSLRWIRISDEIELLDAPGVIPTRINNQENALKLAICEDIGEAAYDNQ 203
Query: 181 DVAAILVQML-----ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA +V +L A + I+ ++RYK+D + G+ ++ ++A + GD + A
Sbjct: 204 VVAAAMVDLLRGLEAADETLISISGFKSRYKLDPACSNGEDYLHEVAKDRYKGDVERTAR 263
Query: 236 RILTDFRKGKFGWISLERPP 255
++L DFR G G ++LE PP
Sbjct: 264 QMLNDFRTGVLGQLTLELPP 283
>gi|56750444|ref|YP_171145.1| ribosomal biogenesis GTPase [Synechococcus elongatus PCC 6301]
gi|81299923|ref|YP_400131.1| ribosomal biogenesis GTPase [Synechococcus elongatus PCC 7942]
gi|56685403|dbj|BAD78625.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168804|gb|ABB57144.1| Ras superfamily GTP-binding protein YlqF [Synechococcus elongatus
PCC 7942]
Length = 287
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 179/260 (68%), Gaps = 6/260 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + WLG+R+R+L+LNR DMI R AW +F QG +V+
Sbjct: 27 VDVVLEVRDARIPLATDHPRLKSWLGSRERLLILNRLDMIPAPARQAWIDWFRSQGDRVL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ G G +LS+ A+A + +N +R+ +G+LPRAVRA ++G+PNVGKS+LINRL+K+
Sbjct: 87 LTDAHAGTGVAQLSQAAQAAGAAMNARRKQRGMLPRAVRAVVIGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR + L+ LD+PG++P R+ DQ AA+KLA+CDDIGE +YD
Sbjct: 147 KVVESARRAGVTRSLRWVRVSEHLDLLDAPGVLPSRLDDQTAALKLALCDDIGEAAYDNQ 206
Query: 181 DVAAILV---QMLARIPTVGITA--LQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VAA LV Q L P G+T +RY + +D T G+ ++ LA H GD + A
Sbjct: 207 RVAAALVDCLQALEAQPLSGVTPTLFFDRYGLSVDDT-GEAYLAALADHRCQGDRERTAL 265
Query: 236 RILTDFRKGKFGWISLERPP 255
+L DFR+G G I+LE PP
Sbjct: 266 MLLNDFRRGSLGPIALELPP 285
>gi|300863562|ref|ZP_07108508.1| ribosomal biogenesis GTPase [Oscillatoria sp. PCC 6506]
gi|300338429|emb|CBN53650.1| ribosomal biogenesis GTPase [Oscillatoria sp. PCC 6506]
Length = 284
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 170/260 (65%), Gaps = 5/260 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + W+G + R+LV+NR DMIS R W +F QG
Sbjct: 24 VDVVLEVRDARIPLATHHPQVPMWVGEKARVLVINRMDMISPRVRKVWEEWFEAQGEVPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G ++ A+ +N +RR +G+LPR VRA +G+PNVGKS+LINRLL R
Sbjct: 84 FTNAQHGQSVEAVAIAARDAGVKLNQRRRDRGMLPRPVRAVAIGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVTR L+W+R +++E LD+PG+IP RI +Q A KLAIC+DIGE +YD
Sbjct: 144 RVVDSARRAGVTRSLQWIRISEEIELLDAPGVIPTRIENQEDAEKLAICEDIGEAAYDNQ 203
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+AA +V +L + T + + L++RY++D G++++ ++A + GD + A
Sbjct: 204 GIAAAMVDLLTYLETTSDGLISASGLKSRYELDATSINGESYLHEVAKLRYQGDVERTAR 263
Query: 236 RILTDFRKGKFGWISLERPP 255
++L DFR G G ++LE PP
Sbjct: 264 KMLNDFRTGLLGQLALELPP 283
>gi|428778573|ref|YP_007170359.1| ribosome biogenesis GTP-binding protein YlqF [Dactylococcopsis
salina PCC 8305]
gi|428692852|gb|AFZ49002.1| ribosome biogenesis GTP-binding protein YlqF [Dactylococcopsis
salina PCC 8305]
Length = 280
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 167/256 (65%), Gaps = 2/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + QW+G++ R+LV+NR+DMI + W +F QG
Sbjct: 25 VDVVLEVLDARIPLASQHPQVSQWVGSKPRLLVINRQDMIPEELHSQWVAWFQSQGYSPY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ Q G G L + A+ VN KRRS+G+ R VRA ++G+PNVGKS+LINRL+ R
Sbjct: 85 LTDAQAGKGIKSLLKAAQKAGEAVNEKRRSRGMRDRPVRAVVMGFPNVGKSALINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVTR LKWVR ++ LD+PG+IP ++ DQAAAIKLAICDDIGE YD+
Sbjct: 145 KIVQSARKAGVTRQLKWVRISDQIDLLDAPGVIPPKLKDQAAAIKLAICDDIGEAGYDLQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
++A+ L+ +L ++ + L+NRY +++ G ++ LA N D + A +L D
Sbjct: 205 NIASDLIDLLKQLHFTDV--LENRYHLEVSNFTGSAYLSALATQRHNQDKERTARELLND 262
Query: 241 FRKGKFGWISLERPPR 256
FRKG G I LE PP
Sbjct: 263 FRKGLMGTIPLELPPE 278
>gi|126660249|ref|ZP_01731365.1| hypothetical protein CY0110_06809 [Cyanothece sp. CCY0110]
gi|126618488|gb|EAZ89241.1| hypothetical protein CY0110_06809 [Cyanothece sp. CCY0110]
Length = 278
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 168/255 (65%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ EV DARIPL++ HP + QW+G++ R+LVLNR DMI + R W +FA QG K+
Sbjct: 25 VDVIFEVLDARIPLASHHPDVPQWIGDKPRLLVLNRMDMIPESVRQDWLNWFAAQGEKIY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N + G G L++ A+ +N +R +G+ PRAVRA ++G+PNVGKS+LINRLL R
Sbjct: 85 YTNAKQGKGIKPLTKAAQGAGVQMNQRRCDRGMRPRAVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+W+R LE LD+PGIIP ++ +Q A+KLAIC+DIGE +YD
Sbjct: 145 KVVASARRAGVTRQLQWIRISDSLELLDAPGIIPAKLDNQEDAVKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+ A LV +L + I L +RY++D G+ +++ L + GD +A ++L D
Sbjct: 205 QIGAALVDLLVELNFEKI--LLSRYQVDPQEITGEEYIEILGETRYQGDKERATMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIMGQIPLELPP 277
>gi|427417693|ref|ZP_18907876.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
7375]
gi|425760406|gb|EKV01259.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
7375]
Length = 304
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 171/264 (64%), Gaps = 9/264 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+RDARIPL+T HP +D W+G++ R+LVLNR DMIS R +W T+F +QG
Sbjct: 27 VDVVLEIRDARIPLATHHPEVDDWIGDKSRVLVLNRVDMISAEARQSWQTWFKEQGQAAY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G L R A+ +N +R+ +G+ PR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 FTNSKQGKGVQNLLRAAQDAGKAMNERRKRRGMKPRPVRAVVIGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ + R GVTR L+WVR ++E LD+PGIIP++++DQ A+KLAICDDIG +YD
Sbjct: 147 KVVVSERRAGVTRQLRWVRISDEIELLDAPGIIPLKLNDQDVALKLAICDDIGGAAYDTQ 206
Query: 181 DVAAI---LVQMLARIPTVG--ITALQNRYKIDMDGTCGKTFVQKLALHLF----NGDTH 231
VAA L+Q L + G A+ +RY + G+ + + L + N D
Sbjct: 207 RVAAAFLDLIQALDQRDESGGYEGAIASRYDTPLTSETGEFYTGETYLSILAQRHNDDLE 266
Query: 232 QAAFRILTDFRKGKFGWISLERPP 255
+AA ++L DFRKG G + LE PP
Sbjct: 267 RAAHQLLNDFRKGHLGNLVLELPP 290
>gi|220907963|ref|YP_002483274.1| ribosomal biogenesis GTPase [Cyanothece sp. PCC 7425]
gi|219864574|gb|ACL44913.1| GTP1/OBG protein [Cyanothece sp. PCC 7425]
Length = 327
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 175/269 (65%), Gaps = 13/269 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP + QW+G++ R+LV+NR D+IS+ R W + QG
Sbjct: 27 VDVVLEVRDARIPLASCHPQVRQWIGHKPRVLVMNRLDLISVPARQLWQDWLVGQGETPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G ++ AKA+ +N +R +G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 87 FTDAQQGKGVAAVAAAAKAVGVQINQRRHDRGMQPRPVRAVVIGFPNVGKSALINRLLNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR LE LD+PG++P R++DQ AA KLAICDDIGE +Y+
Sbjct: 147 RVVDSARRPGVTRQLRWVRISDQLELLDAPGVLPSRLTDQQAATKLAICDDIGEAAYNTQ 206
Query: 181 DVAAILVQMLARIPT--------VGITALQNRYKIDMDGT-----CGKTFVQKLALHLFN 227
++AA LV +L + + L +RY++ +D G+ ++ KLA +
Sbjct: 207 NMAAALVDLLQHLEVKNQILPGLLPKNPLHHRYQVSIDPNQLPILTGEDYLLKLAAERYQ 266
Query: 228 GDTHQAAFRILTDFRKGKFGWISLERPPR 256
GD +AA ++L DFRKG G I+LE PP
Sbjct: 267 GDAERAARQLLNDFRKGLLGAIALELPPE 295
>gi|332711377|ref|ZP_08431309.1| Ras superfamily GTP-binding protein YlqF [Moorea producens 3L]
gi|332349926|gb|EGJ29534.1| Ras superfamily GTP-binding protein YlqF [Moorea producens 3L]
Length = 288
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 175/261 (67%), Gaps = 6/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPLST HP DQW+GN+ R+LV+NR DMI R W ++F KQG
Sbjct: 24 VDVVLEVRDARIPLSTNHPQTDQWVGNKTRVLVINRVDMIDPRMRQLWESWFQKQGDIPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G +++ A+ ++N +RRS+G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 84 FTNAQQGKGIRAVAKAAQTAGEEINRRRRSRGMRPRPVRAVVIGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+W+R LE LD+PG+IP ++++Q A+KLAICDDIGE SYD
Sbjct: 144 RVVESARRPGVTRQLRWIRISDQLELLDAPGVIPAKLNNQQQALKLAICDDIGEASYDNQ 203
Query: 181 DVAAILVQMLARIPTVGI------TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAA 234
VA LV L + + ++L+ RY++D + + ++ LA + + G+ + A
Sbjct: 204 RVATALVAFLKDLDKMKEYTLLLKSSLEKRYQLDPNPLTAEDYLHGLADYRYQGNIERTA 263
Query: 235 FRILTDFRKGKFGWISLERPP 255
++L DFRKG G I+LE PP
Sbjct: 264 RQLLGDFRKGLLGAIALEVPP 284
>gi|409993930|ref|ZP_11277055.1| GTPase YlqF [Arthrospira platensis str. Paraca]
gi|291568869|dbj|BAI91141.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409935217|gb|EKN76756.1| GTPase YlqF [Arthrospira platensis str. Paraca]
Length = 277
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 165/255 (64%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + QW+ + R+L++NR+DMI + W +F +
Sbjct: 24 VDVVLEVRDARIPLATHHPKVSQWVSQKPRLLIINRQDMIPPHIQQQWQQWFEEHQEIPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G + R K +N KR+ +G+LPR VRAG++G+PNVGKS+LINRLL R
Sbjct: 84 FTNAQQGDGVDAVVRATKQAGEQLNQKRQQRGMLPRPVRAGVIGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVTR L+WVR K +E LD+PG+IP RI +Q A+KLAIC+DIGE YD
Sbjct: 144 RVVESARRAGVTRKLQWVRISKQIELLDAPGVIPSRIENQQDALKLAICEDIGEAGYDNQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA +V + + L +RY + + G++++Q LA F GD + A ++L D
Sbjct: 204 RVAAGMVDLFQHLQIH--DKLTDRYSLAIASETGESYLQALADQRFQGDLERTARQLLND 261
Query: 241 FRKGKFGWISLERPP 255
FRKG G I+LE PP
Sbjct: 262 FRKGLLGAIALEIPP 276
>gi|86606591|ref|YP_475354.1| ribosomal biogenesis GTPase [Synechococcus sp. JA-3-3Ab]
gi|86555133|gb|ABD00091.1| GTPase family protein [Synechococcus sp. JA-3-3Ab]
Length = 289
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 162/255 (63%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IEV DARIPL++ HP +D+WLG + R+L LNR D I+ D AW +F++QG V
Sbjct: 27 VDVAIEVVDARIPLASRHPELDKWLGEKPRLLALNRADSIAARDLKAWQEHFSQQGIPVY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+NGQ G G +L + + VN +R+ G+ PRAVRA +VG+PNVGKS+L+NRLL R
Sbjct: 87 PTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMRPRAVRAVVVGFPNVGKSALLNRLLGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +A RPGVTR L+WVR G +L+ LDSPGI+P + DQ AA LAICDDIG +YD
Sbjct: 147 RAVESAARPGVTRQLQWVRLGGELDLLDSPGILPPSLPDQQAASLLAICDDIGAAAYDPE 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA V L ++ LQ RY G VQ LA + GD +AA +IL D
Sbjct: 207 QVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPGSVAVQDLAERRYRGDAERAARQILND 266
Query: 241 FRKGKFGWISLERPP 255
+RKG G ++L+ PP
Sbjct: 267 YRKGWLGPLALQIPP 281
>gi|428774813|ref|YP_007166600.1| Ras superfamily GTP-binding protein YlqF [Halothece sp. PCC 7418]
gi|428689092|gb|AFZ42386.1| Ras superfamily GTP-binding protein YlqF [Halothece sp. PCC 7418]
Length = 283
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 166/255 (65%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + QW+GN+ R+LV+NR+DMI + + W +F QG
Sbjct: 25 VDVVLEVLDARIPLASQHPQVSQWVGNKPRLLVINRQDMIPESLHSEWMAWFQTQGYSPY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ Q G G L + A+ +N KRRS+G+ RAVRA ++G+PNVGKS+LINRL+ R
Sbjct: 85 LTDAQQGKGIKPLLKAAQKAGEAINEKRRSRGMRDRAVRAVVMGFPNVGKSALINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVTR LKWVR + ++ LD+PG+IP ++ DQ AAIKLAICDDIGE +YD+
Sbjct: 145 KVVRSARKAGVTRQLKWVRISQQIDLLDAPGVIPPKLEDQNAAIKLAICDDIGEAAYDLQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+ AA L+++L + I RY + ++ G +V LA + D + A +L D
Sbjct: 205 NTAAELIELLKQFDDNEI--FTQRYNLPVNNLTGYAYVAILAERRHHNDKERTARELLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGLMGTIPLELPP 277
>gi|257061869|ref|YP_003139757.1| ribosomal biogenesis GTPase [Cyanothece sp. PCC 8802]
gi|256592035|gb|ACV02922.1| GTP-binding protein HSR1-related [Cyanothece sp. PCC 8802]
Length = 281
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 163/255 (63%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + QW+G + RILV+NR DMI R W ++F
Sbjct: 25 VDVVLEVLDARIPLASHHPQIPQWIGQKPRILVINRVDMIPDFVRQQWLSWFTHNNETPY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G + + A+ +N +R +G+ PR VRA ++G PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGTGVKAILKAAQQTGVAMNQRRHDRGMRPRPVRAVVIGMPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR + +E LDSPG+IP ++ +Q A KLAIC+DIGE +YD
Sbjct: 145 KIVESARRAGVTRQLRWVRISEAIELLDSPGVIPGKLENQKDAAKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
++AAILV +L + I L +RY+ID G+ +V L + GD +AA ++L D
Sbjct: 205 EMAAILVDLLVELNFEQI--LPSRYQIDPLDMSGEEYVHALGYERYQGDLERAALQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGFMGAIPLEFPP 277
>gi|284929093|ref|YP_003421615.1| Ras superfamily GTP-binding protein YlqF [cyanobacterium UCYN-A]
gi|284809552|gb|ADB95257.1| Ras superfamily GTP-binding protein YlqF [cyanobacterium UCYN-A]
Length = 278
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 167/254 (65%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP+++ HP ++QW+ + +I VLNR DMI + W +F ++G
Sbjct: 25 IDIIFEILDARIPIASHHPNINQWIEGKPKITVLNRMDMIPQSLYQKWLNWFKERGETAH 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ + G G L++LAK + VN+KR ++G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 FTDAKQGKGIKSLNQLAKEAGNLVNIKRVNRGMRPRPVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+W+R K +E LD+PG+IP+++ +Q AIKLAIC+DIGE +YD
Sbjct: 145 KVAISARRAGVTRQLQWIRISKTIELLDAPGVIPIKLENQKNAIKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA L+ +L + LQ RY ID G G+ +++KL + G + A ++L D
Sbjct: 205 QVAAKLIDLLLELNFE--KTLQLRYGIDPLGISGEQYIEKLESSFYKGGKERVAMQLLND 262
Query: 241 FRKGKFGWISLERP 254
FRKG G I LE P
Sbjct: 263 FRKGIMGCIPLELP 276
>gi|443477353|ref|ZP_21067207.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena biceps
PCC 7429]
gi|443017549|gb|ELS31966.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena biceps
PCC 7429]
Length = 279
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 171/258 (66%), Gaps = 6/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEVRD+RI +S+ HP +++W+ + ILV NR D IS + + W +F +Q
Sbjct: 26 VDVVIEVRDSRILMSSKHPKIEKWVEGKSHILVCNRIDAISSSVKMQWTRWFTEQERMAY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G + L + A+ VN +RR +G+LPR VRA +VG+PNVGKS+LINRLLK+
Sbjct: 86 FTDAQAGKGMVDLLKAAQVAGEKVNERRRGRGMLPRPVRAVVVGFPNVGKSALINRLLKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A +PGVTR L+W+R ++E LD+PG+IP + DQ AA+KLAICDDIG+ +YD
Sbjct: 146 KVVASANKPGVTRQLRWIRISDEIELLDTPGVIPPLLHDQDAALKLAICDDIGQAAYDNV 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG-TCGKTFVQKL-ALHLFNGDTHQAAFRIL 238
VAA V +L ++ L +RY ID + G ++ ++ AL+ F GD + A IL
Sbjct: 206 LVAAEAVDLLIQLN----VKLSSRYAIDPQSVSSGIEYIHEVAALNKFQGDLDKVARLIL 261
Query: 239 TDFRKGKFGWISLERPPR 256
DFRKGK G I+LE PP+
Sbjct: 262 YDFRKGKLGAIALEMPPQ 279
>gi|209526709|ref|ZP_03275232.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
gi|376002378|ref|ZP_09780213.1| ribosomal biogenesis GTPase; GTP-binding protein HSR1-related
[Arthrospira sp. PCC 8005]
gi|423067923|ref|ZP_17056713.1| GTP-binding protein HSR1-related protein [Arthrospira platensis C1]
gi|209492841|gb|EDZ93173.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
gi|375329258|emb|CCE15966.1| ribosomal biogenesis GTPase; GTP-binding protein HSR1-related
[Arthrospira sp. PCC 8005]
gi|406710551|gb|EKD05759.1| GTP-binding protein HSR1-related protein [Arthrospira platensis C1]
Length = 277
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 164/255 (64%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL+T HP + QW+ + R+L++NR+DMI + W +F +
Sbjct: 24 VDVVLEVRDARIPLATHHPKVSQWVSQKPRLLIINRQDMIPPHIQQQWQQWFEEHQEIPY 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G + R K +N KR+ +G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 84 FTNAQQGDGVDAVVRATKQAGEQLNQKRQQRGMLPRPVRAVVIGFPNVGKSALINRLLGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A R GVTR L+WVR K +E LD+PG+IP RI +Q A+KLAIC+DIGE YD
Sbjct: 144 RVVESARRAGVTRKLQWVRISKQIELLDAPGVIPSRIENQQDALKLAICEDIGEAGYDNQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA +V + + L +RY + + G++++Q LA F GD + A ++L D
Sbjct: 204 RVAAGMVDLFQDLQIH--HKLTDRYSLAIASENGESYLQALADQRFQGDLERTARQLLND 261
Query: 241 FRKGKFGWISLERPP 255
FRKG G I+LE PP
Sbjct: 262 FRKGLLGAIALEIPP 276
>gi|428202675|ref|YP_007081264.1| ribosome biogenesis GTP-binding protein YlqF [Pleurocapsa sp. PCC
7327]
gi|427980107|gb|AFY77707.1| ribosome biogenesis GTP-binding protein YlqF [Pleurocapsa sp. PCC
7327]
Length = 280
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 173/255 (67%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + +W+G++ RIL+LNR DMI + R AW +F ++G
Sbjct: 26 VDVVLEVLDARIPLASHHPQVAEWIGSKPRILILNRADMIPESVRQAWQAWFKRRGEVPY 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G +S+ A+A ++N +RR +G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 86 FTDAQQGQGIRAVSKAAQAAGVEMNRRRRDRGMRPRPVRAVVIGFPNVGKSALINRLLGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +A R GVTR L+WVR + +E LD+PG+IP ++ +Q A+KLAIC+DIGE +YD
Sbjct: 146 KAVASARRAGVTRQLQWVRISESIELLDAPGVIPSKLDNQTDAVKLAICEDIGEAAYDNQ 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA LV +L + I L++RY +D G+ ++ +LA + GD +AA ++L D
Sbjct: 206 HVAAALVDLLVALAYEEI--LRSRYGLDPLSMTGEEYIHELANSRYQGDVERAALQLLND 263
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 264 FRKGLMGAIPLELPP 278
>gi|67921122|ref|ZP_00514641.1| GTP-binding [Crocosphaera watsonii WH 8501]
gi|416396019|ref|ZP_11686395.1| 50S ribosomal subunit maturation GTPase RbgA (YlqF-like)
[Crocosphaera watsonii WH 0003]
gi|67857239|gb|EAM52479.1| GTP-binding [Crocosphaera watsonii WH 8501]
gi|357263025|gb|EHJ12085.1| 50S ribosomal subunit maturation GTPase RbgA (YlqF-like)
[Crocosphaera watsonii WH 0003]
Length = 279
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ EV DARIPL++ HP + W+G++ R++VLNR DMI + R W +FA QG +
Sbjct: 25 VDVIFEVLDARIPLASHHPDVPGWIGDKPRLVVLNRTDMIPESVRQGWLNWFAAQGETLY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N + G G L + A+A +N +R+ +G+ PRAVRA ++G+PNVGKS+LINRLL R
Sbjct: 85 CTNAKQGKGIKALKKAAQAAGVQMNERRQQRGMRPRAVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+W+R LE LD+PGIIP ++ +Q A+KLAIC+DIGE +YD
Sbjct: 145 KVAASARRAGVTRQLQWIRISDALELLDAPGIIPAKLENQEDAVKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+ A L+ +L + I L +RY++D G+ +++ L F GDT +A ++L D
Sbjct: 205 QIGAALIDLLVELNFDNI--LSSRYQLDPQNITGEEYIESLGNSKFKGDTERATMQLLND 262
Query: 241 FRKGKFGWISLERP 254
FRKG G I LE P
Sbjct: 263 FRKGVMGKIPLELP 276
>gi|428219210|ref|YP_007103675.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena sp. PCC
7367]
gi|427990992|gb|AFY71247.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena sp. PCC
7367]
Length = 283
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 166/259 (64%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEVRDARIPL++ HP M++W+ R +LVLNR D I + AW +F Q
Sbjct: 26 VDVVIEVRDARIPLASCHPKMNEWIEGRSHLLVLNRVDAIPANIKIAWQDWFVSQKQTPF 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N Q G G L + A S VN +R+ +G+LPR VRA ++G+PNVGKS+LINRLLK+
Sbjct: 86 FTNAQAGKGVKGLLKAAATAGSHVNDRRKKRGMLPRPVRAVVIGFPNVGKSALINRLLKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +A RPGVTR L+W+R +E LD+PGI+P + DQ AA+KLAICDDIG SY+
Sbjct: 146 RAVASANRPGVTRQLRWIRISDQIELLDTPGILPPLLDDQDAALKLAICDDIGTASYEYQ 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLA-LHLFNGDTHQAAFR 236
VAA V++L L++RY + + + + G +++ +A + GD + A +
Sbjct: 206 LVAAAAVEIL----VTQNAPLEDRYGLAYANDEQSSGMGYLKAVAQTDRYQGDLERVARQ 261
Query: 237 ILTDFRKGKFGWISLERPP 255
+L DFRKG+ G I++E PP
Sbjct: 262 VLHDFRKGRLGEIAIETPP 280
>gi|33239672|ref|NP_874614.1| ribosomal biogenesis GTPase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237197|gb|AAP99266.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 287
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EVRDARIPL+T HP + +W+ N+K +LV+NR DMIS N+W +F + G +
Sbjct: 27 VDLVVEVRDARIPLATGHPCLHKWIRNKKHLLVINRRDMISQKAFNSWDNWFKENGQEAW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ N + G GT K+ A L +D+N +R S+G+ RAVRA I+G+PNVGKS+LINRL+ +
Sbjct: 87 WCNAKDGNGTNKIKEAAIKLGNDLNNRRESRGMRKRAVRALILGFPNVGKSALINRLVNK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVT+ L+WVR G+ L+ LD+PG++P ++ DQ AA+KLA+CDDIG+ SYDV
Sbjct: 147 KVVKSARRAGVTKSLQWVRVGQQLDLLDAPGVLPPQLEDQEAAVKLALCDDIGQASYDVE 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA + +L ++ L+ RY I + + +++ A + +G+T++
Sbjct: 207 SVAIKFLNILNQVKNESDFETSNQILEKRYGISWEESNNNVHLWLENAANYHTSGNTNRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ R+L DFRK G ISLE P
Sbjct: 267 SQRLLDDFRKRLIGTISLELP 287
>gi|172035401|ref|YP_001801902.1| ribosomal biogenesis GTPase [Cyanothece sp. ATCC 51142]
gi|354555493|ref|ZP_08974794.1| ribosome biogenesis GTP-binding protein YlqF [Cyanothece sp. ATCC
51472]
gi|171696855|gb|ACB49836.1| unknown [Cyanothece sp. ATCC 51142]
gi|353552552|gb|EHC21947.1| ribosome biogenesis GTP-binding protein YlqF [Cyanothece sp. ATCC
51472]
Length = 283
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ EV DARIPL++ HP + QW+G++ R+LVLNR DMI + R W +FA QG V
Sbjct: 25 VDVIFEVLDARIPLASHHPDVPQWIGDKPRLLVLNRMDMIPESVRQGWLNWFAAQGETVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N + G G L + A+ +N +RR +G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 YTNAKQGKGIKPLKKAAQEAGVQMNQRRRDRGMRPRGVRAVVIGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+W+R DLE LD+PGIIP ++ Q A+KLAIC+DIGE +YD
Sbjct: 145 KVVASARRAGVTRQLQWIRIADDLELLDAPGIIPAKLDTQEDAVKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
+ A LV +L + I L +RY++D G+ +++ L + GD +A ++L D
Sbjct: 205 QIGAALVDLLVELNFEKI--LSSRYQLDPQEMTGEEYIEILGNTRYKGDKERATMQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGIMGQIPLELPP 277
>gi|113953127|ref|YP_731895.1| ribosomal biogenesis GTPase [Synechococcus sp. CC9311]
gi|113880478|gb|ABI45436.1| GTPase family protein [Synechococcus sp. CC9311]
Length = 292
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ +LV+NR DM++ A AW +F QG + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLLVINRRDMVTTAAWEAWDQWFKAQGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A + +N +R+++G+ PRAVRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGNQLNERRKNRGMRPRAVRALTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQKAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLA-----RIPTVGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA +Q+L V ++ L+ RY + G+ +++ A +GDT +
Sbjct: 207 LVAQAFLQLLIDAQGREASGVVLSTLEQRYGTPVAGSTADPAFWLEATAERHTSGDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFR+ G I+LE P
Sbjct: 267 AQRLLDDFRRSLLGSIALELP 287
>gi|218248810|ref|YP_002374181.1| ribosomal biogenesis GTPase [Cyanothece sp. PCC 8801]
gi|218169288|gb|ACK68025.1| GTP1/OBG protein [Cyanothece sp. PCC 8801]
Length = 281
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 165/255 (64%), Gaps = 2/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + QW+G + RILV+NR DMI + R W ++F
Sbjct: 25 VDVVLEVLDARIPLASHHPQIPQWIGQKPRILVINRVDMIPESVRQQWLSWFTHNNETPY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G + + A+ +N +RR +G+ PR VRA ++G PNVGKS+LINRLL R
Sbjct: 85 FTNAKQGTGVKAILKAAQQTGVAMNERRRDRGMRPRPVRAVVIGMPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR + +E LDSPG+IP ++ +Q A KLAIC+DIGE +YD
Sbjct: 145 KIVESARRAGVTRQLRWVRISEAIELLDSPGVIPGKLENQKDAAKLAICEDIGEAAYDNQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
++AAILV +L + I L +RY+ID G+ +V L + GD +AA ++L D
Sbjct: 205 EMAAILVDLLVELNFEQI--LPSRYQIDPLDMSGEEYVHALGYERYQGDLERAALQLLND 262
Query: 241 FRKGKFGWISLERPP 255
FRKG G I LE PP
Sbjct: 263 FRKGFMGAIPLEFPP 277
>gi|428222409|ref|YP_007106579.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
7502]
gi|427995749|gb|AFY74444.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
7502]
Length = 286
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 163/255 (63%), Gaps = 5/255 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEVRDARIP+++THP + W R +LV+NR DMIS + +F +Q +V
Sbjct: 32 VDVVIEVRDARIPIASTHPKIATWTEGRSHLLVMNRLDMISGLHQKQLQRWFNQQEQEVF 91
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G +L + A+ VN +R S+G+LPR VRA ++G+PNVGKS+LINRLL R
Sbjct: 92 FTNAKDGDGIKQLLKAAQVAGIRVNERRHSRGMLPRPVRAAVIGFPNVGKSALINRLLNR 151
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ ++ RPGVTR L+W+R +E LD+PG +P + DQ AA+KLAICDDIG+ +YD
Sbjct: 152 RVAESSNRPGVTRQLRWIRISDAIELLDTPGNLPSLLGDQDAAVKLAICDDIGQAAYDNV 211
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH-LFNGDTHQAAFRILT 239
+AA V + +G+ L +Y I G +++ +A +NGD + A IL
Sbjct: 212 LIAAAAVD---KFKEIGVP-LHIKYGISAKELSGMEYIEAVAKSDRYNGDFKRVADLILH 267
Query: 240 DFRKGKFGWISLERP 254
DFRKG+ G I+LE P
Sbjct: 268 DFRKGRLGAIALEYP 282
>gi|72383397|ref|YP_292752.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. NATL2A]
gi|72003247|gb|AAZ59049.1| Ras superfamily GTP-binding protein YlqF [Prochlorococcus marinus
str. NATL2A]
Length = 287
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 168/261 (64%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V EVRDARIPL+T+HP + +WL +K+ILVLNR+DMI++ AW +G
Sbjct: 27 VDLVFEVRDARIPLATSHPYLQKWLKGKKQILVLNRKDMINVEAYQAWDKKLRSEGKVPW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G +++ A ++N +R +G+ RA+R +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVLQIKHAAIRAGQELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ ++ +PGVTR L+WVR G+DL+ LD+PG++P R DQ AA+KLAICDDIG+ +YD
Sbjct: 147 KVVSSSRKPGVTRSLRWVRLGQDLDLLDAPGVLPPRFEDQNAALKLAICDDIGQAAYDTE 206
Query: 181 DVAAI---LVQMLARIPTVGITA--LQNRYKIDMDGTCGKTFVQKL--ALHLFNGDTHQA 233
VA L++ L I GI + LQNRY I ++ T + L A +GDT +
Sbjct: 207 QVAISFMKLLETLENIQEAGIKSMCLQNRYGIFVNETIKDKYSWLLSAAERHTSGDTQRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ R+L DFRK G ISLE P
Sbjct: 267 SQRLLDDFRKNLLGNISLELP 287
>gi|124024983|ref|YP_001014099.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. NATL1A]
gi|123960051|gb|ABM74834.1| Predicted GTPases [Prochlorococcus marinus str. NATL1A]
Length = 287
Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 168/261 (64%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V EVRDARIPL+T+HP + +WL +K+ILVLNR+DMI++ AW +G
Sbjct: 27 VDLVFEVRDARIPLATSHPYLQKWLKGKKQILVLNRKDMINIDAYQAWDKKLRSEGKVPW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G +++ A ++N +R +G+ RA+R +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ ++ +PGVTR L+WVR G+DL+ LD+PG++P R DQ AA+KLAICDDIG+ +YD
Sbjct: 147 KVVSSSRKPGVTRSLRWVRLGQDLDLLDAPGVLPPRFEDQNAALKLAICDDIGQAAYDTE 206
Query: 181 DVAAI---LVQMLARIPTVGITA--LQNRYKIDMDGTCGKTFVQKL--ALHLFNGDTHQA 233
VA L++ L I GI + LQNRY I ++ T + L A +GDT +
Sbjct: 207 QVAISFMKLLETLENIQEAGIKSMCLQNRYGIFVNETIKDKYSWLLSAAERHTSGDTQRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ R+L DFRK G ISLE P
Sbjct: 267 SQRLLDDFRKNLLGNISLELP 287
>gi|424513536|emb|CCO66158.1| ribosomal biogenesis GTPase [Bathycoccus prasinos]
Length = 434
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 173/282 (61%), Gaps = 28/282 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLG---------------NRKRILVLNREDMISMADR 45
+D V+EVRD RIPL+T+HP + W+G + I VLNR DM+ +R
Sbjct: 152 VDCVVEVRDLRIPLATSHPDVAAWVGSSRDNSNNNANNSSSGKLHITVLNRSDMVDEQER 211
Query: 46 NAWATYFAKQGTK--VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIV 103
W +YF + + VI ++ + G G ++ ++A ++A +VN KR KGLL R VR +V
Sbjct: 212 AKWVSYFKHKMKERHVIVTDAKSGRGVEQVKKIALSVAKEVNEKRIQKGLLARPVRTAVV 271
Query: 104 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAA 163
GYPNVGKS+LINRL+ ++ C +APRPGVTR L+WVR ++++ LDSPG++P R+SDQ AA
Sbjct: 272 GYPNVGKSALINRLVGKKACASAPRPGVTRDLRWVRVSEEIDLLDSPGVLPPRMSDQDAA 331
Query: 164 IKLAICDDIGERSYDVADVAAILVQMLARIPT-------VGITALQNRYKI---DMDGTC 213
+LA+ +DIGE SY ++VAA L + + +P+ +G L RYK+ +++
Sbjct: 332 NRLAMANDIGEASYKASEVAARLFEEMKMLPSWRREKGNIG-NVLMKRYKMSAKEVEEMN 390
Query: 214 GKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPP 255
G F++K+AL GD +A ++L DFR G G LE P
Sbjct: 391 GDMFIEKIALSTCGGDFERAGAKVLNDFRGGFLGKFCLEVTP 432
>gi|452825102|gb|EME32101.1| GTP-binding family protein isoform 1 [Galdieria sulphuraria]
Length = 338
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 158/257 (61%), Gaps = 5/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP ST HP + WLG +KR++VLNR DM+ + W +QG +V
Sbjct: 76 VDVVLEVRDARIPKSTEHPELQSWLGEKKRLVVLNRRDMVPQEALSVWIKTIKQQGFEVF 135
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N +LG G +L + +N KRR KGLLPR+V IVGYPNVGKS+LINRL+ R
Sbjct: 136 DTNAKLGNGIQRLRKALIFCGKAINEKRRVKGLLPRSVHCMIVGYPNVGKSALINRLVNR 195
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ + RPGVTR +W++ ++ LDSPGIIP ++ Q++A KLA C+DIG SYD
Sbjct: 196 AIAKSQNRPGVTRTFQWIQVSDQIQLLDSPGIIPPKLVSQSSAEKLAFCNDIGSGSYDNQ 255
Query: 181 DVAAILVQMLARIPTV-----GITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
VA+ L++ + + TV R+ IDM G+ ++ ++ F+ D + A
Sbjct: 256 VVASALLECIRNVGTVWSQDHCFVRFNERFGIDMLKHSGEMLLEIISRKQFSNDKEKTAQ 315
Query: 236 RILTDFRKGKFGWISLE 252
+IL +FR+G +G + LE
Sbjct: 316 KILAEFRQGLWGPLCLE 332
>gi|352095568|ref|ZP_08956582.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. WH
8016]
gi|351678710|gb|EHA61855.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. WH
8016]
Length = 292
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 169/261 (64%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ +LV+NR DM++ A AW +F QG + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLLVINRRDMVTPAAWEAWDQWFKAQGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G + + A + +N +R+++G+ PRAVRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKLVQQAAIRAGNQLNERRKTRGMRPRAVRALTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQRAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLA-----RIPTVGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA +++L V ++ L+ RY + G ++ A +GDT +
Sbjct: 207 LVAQAFLKLLIESQGREASGVVLSVLEQRYGTPVSGQTADPAFWLAATAERHTSGDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFR+ G I+LE P
Sbjct: 267 AQRLLDDFRRSLLGSIALELP 287
>gi|16330541|ref|NP_441269.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|383322282|ref|YP_005383135.1| hypothetical protein SYNGTI_1373 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325451|ref|YP_005386304.1| hypothetical protein SYNPCCP_1372 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491335|ref|YP_005409011.1| hypothetical protein SYNPCCN_1372 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436602|ref|YP_005651326.1| hypothetical protein SYNGTS_1373 [Synechocystis sp. PCC 6803]
gi|451814699|ref|YP_007451151.1| hypothetical protein MYO_113850 [Synechocystis sp. PCC 6803]
gi|1653032|dbj|BAA17949.1| slr0267 [Synechocystis sp. PCC 6803]
gi|339273634|dbj|BAK50121.1| hypothetical protein SYNGTS_1373 [Synechocystis sp. PCC 6803]
gi|359271601|dbj|BAL29120.1| hypothetical protein SYNGTI_1373 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274771|dbj|BAL32289.1| hypothetical protein SYNPCCN_1372 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359277941|dbj|BAL35458.1| hypothetical protein SYNPCCP_1372 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958464|dbj|BAM51704.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|451780668|gb|AGF51637.1| hypothetical protein MYO_113850 [Synechocystis sp. PCC 6803]
Length = 279
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 163/243 (67%), Gaps = 2/243 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIPL++ HP + W+G + ++++LNR DMI+ + W T+F +Q V
Sbjct: 25 VDVVLEVIDARIPLASQHPDVPLWVGEKPKLIILNRVDMITPELQEQWLTWFRQQNQTVY 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N + G G +S+ A+ VN +R+ +G+ PR VRA ++G+PNVGKS+LINRLL R
Sbjct: 85 YANAKQGTGVKAISKAAQQAGKAVNERRQRRGMQPRPVRAVVMGFPNVGKSALINRLLGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+W+R LE LDSPG+IP+++ +QA A+KLAIC+DIGE +Y+
Sbjct: 145 KVVESARRAGVTRQLRWIRISDSLELLDSPGVIPLKLENQANALKLAICEDIGEAAYENQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VA +V +L + ++G AL RY++ + G ++ LA NGD +AA ++L D
Sbjct: 205 AVAIAMVDLLLDL-SLG-EALTQRYQVPPEAMNGDLYLIALADARHNGDRERAAVQLLND 262
Query: 241 FRK 243
FRK
Sbjct: 263 FRK 265
>gi|434398566|ref|YP_007132570.1| ribosome biogenesis GTP-binding protein YlqF [Stanieria
cyanosphaera PCC 7437]
gi|428269663|gb|AFZ35604.1| ribosome biogenesis GTP-binding protein YlqF [Stanieria
cyanosphaera PCC 7437]
Length = 281
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIP+++ HP + W+G + RILVLNR DMI + W T+F ++ K
Sbjct: 27 VDVVLEVLDARIPVASHHPQVADWIGEKPRILVLNRVDMIPNETKQEWITWFKERREKPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++N + G G + A+ + +N +RR +G+ PRAVRA ++G+PNVGKS+LINRL+ R
Sbjct: 87 WTNAKAGKGIKAVKYAAQDAGAAMNQRRRDRGMRPRAVRAVVIGFPNVGKSALINRLVGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +A + GVTR L+WVR ++E LD+PG+IP R+ +Q AIKLAIC+DIGE +YD
Sbjct: 147 KAVASARKAGVTRQLQWVRISDEIELLDAPGVIPWRLENQQDAIKLAICEDIGEAAYDNQ 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA+ V +L + + LQ+RY +D G++F+Q LA ++ GD + A +L D
Sbjct: 207 RVAAVFVDLLVELGFAEV--LQSRYHLDPLTITGESFIQDLADKVYQGDKERVARLLLHD 264
Query: 241 FRKGKFGWISLERP 254
FR G G I LE P
Sbjct: 265 FRTGAMGQIPLELP 278
>gi|87300809|ref|ZP_01083651.1| hypothetical protein WH5701_05155 [Synechococcus sp. WH 5701]
gi|87284680|gb|EAQ76632.1| hypothetical protein WH5701_05155 [Synechococcus sp. WH 5701]
Length = 303
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 171/261 (65%), Gaps = 6/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP +T HP + +W+ + R+LV+NR DMI+ A R AW + K+G
Sbjct: 40 VDLVIEVRDARIPRATGHPRLQRWMKAKPRLLVINRRDMINEAARQAWDHWLRKRGETPW 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++G G +L A S +N +R +G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 100 WCDAKVGTGVKQLQEAAIRAGSQLNARRAGRGMRPRPVRALMLGFPNVGKSALINRLVRQ 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G++L+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 160 KVVDSARRAGVTRTLRWVRLGQELDLLDAPGVLPPRLDDQRAALLLALCDDIGQAAYDGE 219
Query: 181 DVAAI---LVQMLARIPTVGITA--LQNRYKIDMDGTC-GKTFVQKLALHLFNGDTHQAA 234
VA L++ L + P GI++ + RY + + G ++++ A +GDT + A
Sbjct: 220 AVAVAFLRLLETLQQHPAAGISSGGVLGRYGVPVPSPMDGWSWLEAAAARHTSGDTARMA 279
Query: 235 FRILTDFRKGKFGWISLERPP 255
R+L DFR+ G I+LE PP
Sbjct: 280 QRLLDDFRRSLLGPIALELPP 300
>gi|298714676|emb|CBJ27601.1| PYlqF, plastid YlqF/RbgA-like GTPase [Ectocarpus siliculosus]
Length = 542
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 162/278 (58%), Gaps = 22/278 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG---- 56
+DVV+EVRD RIP +TTH L+ W+G R I+VLNR D S W Y +G
Sbjct: 192 VDVVVEVRDCRIPAATTHQLVPSWVGKRPLIVVLNRVDTASPTAVEQWKKYLVAEGGLRA 251
Query: 57 ------TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGK 110
V F + + G G ++ + A S VN +R +G+ PR+VR ++G+PNVGK
Sbjct: 252 DNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNDRRVRRGMNPRSVRVAVIGFPNVGK 311
Query: 111 SSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-------KDLEFLDSPGIIPMRISDQAAA 163
S+LINRL+ +++ + +PGVT+ + WVR G ++LE LDSPGIIP R DQ A
Sbjct: 312 SALINRLIGKKVAKSMNKPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQEDQNQA 371
Query: 164 IKLAICDDIGERSYDVADVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKTFV 218
+KLAIC+DIG+ SYD VAA ++ L V + A+ RY ID G+ ++
Sbjct: 372 LKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVATRYGIDPRRHSGEEYL 431
Query: 219 QKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPR 256
+A ++ G+ + AA ++L DFRKG G +SLE PPR
Sbjct: 432 HLVAQKMYFGEKNSAADKLLGDFRKGHLGSLSLEAPPR 469
>gi|170076707|ref|YP_001733345.1| ribosomal biogenesis GTPase [Synechococcus sp. PCC 7002]
gi|169884376|gb|ACA98089.1| GTPase of unknown function [Synechococcus sp. PCC 7002]
Length = 278
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIP ++ HP +D+W+G + R++V+NR DMI + W ++ Q + +
Sbjct: 26 VDVVLEVLDARIPFASHHPQVDEWIGEKPRVVVVNRRDMIPSETLSQWRDWYQAQKIQPV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ + G G + + A+ +N +R S+G+ PR VRA ++G PNVGKS+LINRL+ +
Sbjct: 86 FTDAKKGTGVKGVIKAAQLAGKAMNDRRISRGMRPRPVRAVVMGLPNVGKSALINRLVGK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVT+ L+WVR +E LD+PG+IP ++ DQ A+KLAIC+DIG SYD
Sbjct: 146 KVVESARKAGVTKQLRWVRISDQIEMLDAPGVIPWKLDDQHNAVKLAICEDIGAASYDNQ 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA +V +L + L RY +D G+ +V L H F GD ++A +L +
Sbjct: 206 LVAAAMVDLLVELNLE--QHLTERYDLDPLDMSGEDYVIALGDHRFQGDRERSAVTLLNE 263
Query: 241 FRKGKFGWISLERP 254
FRKG G I LE P
Sbjct: 264 FRKGILGQIPLELP 277
>gi|148240685|ref|YP_001226072.1| ribosomal biogenesis GTPase [Synechococcus sp. WH 7803]
gi|147849224|emb|CAK24775.1| Predicted GTPase [Synechococcus sp. WH 7803]
Length = 288
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 176/261 (67%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++W+ ++ +LV+NR DM++ A R AW +F +G + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWISGKQHLLVINRRDMVTPAARVAWEAWFKARGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PR VRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVKQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDGE 206
Query: 181 DVA-AILVQMLARIPT----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA A L ++A P VG+ L++RY + ++G +++ +A +GDT +
Sbjct: 207 LVAQAFLNLLMALQPQEASGVGLALLESRYGVPLEGATQDPVFWLEAVAERHTSGDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGSIALELP 287
>gi|427703988|ref|YP_007047210.1| ribosome biogenesis GTP-binding protein YlqF [Cyanobium gracile PCC
6307]
gi|427347156|gb|AFY29869.1| ribosome biogenesis GTP-binding protein YlqF [Cyanobium gracile PCC
6307]
Length = 318
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 168/270 (62%), Gaps = 15/270 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP + +W+ ++ +LV+NR DM+S R AW +F ++G
Sbjct: 38 VDLVIEVRDARIPLATGHPRLQRWIRGKQHLLVINRRDMVSAGARLAWDGWFRQRGEVPW 97
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++G G +L + A +N +R +G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 98 WCDAKVGTGVKQLQQAAIRAGETLNARRAGRGMKPRPVRALMLGFPNVGKSALINRLVRQ 157
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ A ++LA+CDDIG+ SYD
Sbjct: 158 KVVESARRAGVTRSLRWVRLGQDLDLLDAPGVLPPRLDDQLAGLRLALCDDIGQASYDGE 217
Query: 181 DVAAILVQMLARIPTVGITA-----LQNRYKIDMDGTCGKTFVQKLA----------LHL 225
VA +++LA++ V L+ RY + + G + +
Sbjct: 218 AVAQAFLRLLAQLEPVAAAGVAPGLLERRYGVTVPPLPGADPKRPIPDAEAWLAAAAARH 277
Query: 226 FNGDTHQAAFRILTDFRKGKFGWISLERPP 255
+GDT + A R+L DFR+ G ISLE PP
Sbjct: 278 TSGDTPRMAQRLLDDFRRSLLGPISLELPP 307
>gi|427723164|ref|YP_007070441.1| Ras superfamily GTP-binding protein YlqF [Leptolyngbya sp. PCC
7376]
gi|427354884|gb|AFY37607.1| Ras superfamily GTP-binding protein YlqF [Leptolyngbya sp. PCC
7376]
Length = 278
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIP ++ HP D+W+ ++ R++V+NR DMI W ++ Q + +
Sbjct: 26 VDVVLEVLDARIPYASHHPQFDEWVQDKPRVIVVNRRDMIPSETLTQWRDWYQSQKLQPV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ Q G G + + A+ +N +R S+G+ PR VRA ++G PNVGKS+LINRL+ +
Sbjct: 86 FTDAQKGKGVKGVIKAAQIAGKAMNDRRISRGMKPRPVRAVVMGLPNVGKSALINRLVGK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + G+T+ L+WVR +E LD+PG+IP ++ +Q AIKLAIC+DIG SYD
Sbjct: 146 KVVASARKAGITKQLRWVRISDQIEMLDAPGVIPWKLDNQENAIKLAICEDIGAASYDNE 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VA LV++L + + L +RY+++ G+ ++ L H F D +AA +L D
Sbjct: 206 LVAQALVKLLVDLNLNQV--LGDRYELETGEMSGEDYIIALGEHRFQNDKERAAVALLND 263
Query: 241 FRKGKFGWISLERP 254
FRKG G + LE P
Sbjct: 264 FRKGNLGLLPLELP 277
>gi|88809815|ref|ZP_01125321.1| hypothetical protein WH7805_10578 [Synechococcus sp. WH 7805]
gi|88786199|gb|EAR17360.1| hypothetical protein WH7805_10578 [Synechococcus sp. WH 7805]
Length = 289
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++W+ ++ +LV+NR DM++ R AW +F +G + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWINGKQHLLVINRRDMVTSEARVAWEAWFKARGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PR VRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVKQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQML-----ARIPTVGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA + +L VG+ L++RY + ++G +++ +A +GDT +
Sbjct: 207 LVAQAFLNLLKGLQPQEASGVGLALLESRYGVPLEGATEDPAYWLEAVAERHTSGDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGSIALELP 287
>gi|452825101|gb|EME32100.1| GTP-binding family protein isoform 2 [Galdieria sulphuraria]
Length = 356
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 159/275 (57%), Gaps = 23/275 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP ST HP + WLG +KR++VLNR DM+ + W +QG +V
Sbjct: 76 VDVVLEVRDARIPKSTEHPELQSWLGEKKRLVVLNRRDMVPQEALSVWIKTIKQQGFEVF 135
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N +LG G +L + +N KRR KGLLPR+V IVGYPNVGKS+LINRL+ R
Sbjct: 136 DTNAKLGNGIQRLRKALIFCGKAINEKRRVKGLLPRSVHCMIVGYPNVGKSALINRLVNR 195
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ + RPGVTR +W++ ++ LDSPGIIP ++ Q++A KLA C+DIG SYD
Sbjct: 196 AIAKSQNRPGVTRTFQWIQVSDQIQLLDSPGIIPPKLVSQSSAEKLAFCNDIGSGSYDNQ 255
Query: 181 DVAAILVQMLARIPTV-----GITALQNRYKIDMDGTCGK------------------TF 217
VA+ L++ + + TV R+ IDM G+ +F
Sbjct: 256 VVASALLECIRNVGTVWSQDHCFVRFNERFGIDMLKHSGEMLLVGSFLIAAIVRVHYFSF 315
Query: 218 VQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLE 252
+ ++ F+ D + A +IL +FR+G +G + LE
Sbjct: 316 QEIISRKQFSNDKEKTAQKILAEFRQGLWGPLCLE 350
>gi|443328436|ref|ZP_21057033.1| ribosome biogenesis GTP-binding protein YlqF [Xenococcus sp. PCC
7305]
gi|442791890|gb|ELS01380.1| ribosome biogenesis GTP-binding protein YlqF [Xenococcus sp. PCC
7305]
Length = 280
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 165/254 (64%), Gaps = 2/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIPL++ HP + W+G + ++ +LNR DMI + + W +F Q TK
Sbjct: 27 VDVVLEVRDARIPLASHHPQVADWIGEKPKVSILNRMDMIPESVQKQWLEWFKAQETKTY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F+N + G G + A+A +N +RR +G+ PR VRA ++G+PNVGKS+LINRL+ +
Sbjct: 87 FTNAKKGKGIKAVKTAAQAAGVAMNQRRRDRGMRPRPVRAVVIGFPNVGKSALINRLVGK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ + R GVTR L+WVR +++E LD+PG+IP ++ +Q A+KLAIC+DIG+ SYD
Sbjct: 147 KAVVSERRAGVTRQLRWVRMSQEIELLDAPGVIPWKLYNQENAVKLAICEDIGQASYDNQ 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VAA +V ++ ++ I LQ+RY ++ + G++++ +A + GD + A + L D
Sbjct: 207 LVAAAMVDLIMKLDFGKI--LQSRYGVEPEALTGESYLHTVAQKRYQGDKERVARQFLQD 264
Query: 241 FRKGKFGWISLERP 254
FR G G I LE P
Sbjct: 265 FRTGAIGSIPLELP 278
>gi|116074039|ref|ZP_01471301.1| GTP-binding protein [Synechococcus sp. RS9916]
gi|116069344|gb|EAU75096.1| GTP-binding protein [Synechococcus sp. RS9916]
Length = 292
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++W+ ++ +LV+NR DM++ R+AW +F QG +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWVKGKQHLLVINRRDMVTAEARDAWQQWFKSQGQATV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G +L + A + +N +RR++G+ PR VRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQLQQAAIRAGNQLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVKQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQRAALFLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARI---PTVGITA--LQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA ++ML + P G++ ++ RY I + G ++Q A + DT +
Sbjct: 207 LVAQAFLRMLTAMEQRPGSGVSLGRVEKRYGIALTGETADPALWMQAAAEKHTSADTSRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R++ DFRK G ISLE P
Sbjct: 267 AQRLMDDFRKSALGSISLELP 287
>gi|359461303|ref|ZP_09249866.1| GTPase YlqF [Acaryochloris sp. CCMEE 5410]
Length = 289
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP S+ HP + +W+G++ +LVLNR D+++ W F +G
Sbjct: 27 VDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVLNRIDLVTPVSHQLWLDAFKAEGQVPY 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ Q G G + + A+ + +N +RRS+G+ PR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 CTDAQHGKGIKAVIKAAEKVGVSINQRRRSRGMRPRPVRAVVLGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +DLE LD+PG++P ++++Q AA KLAICDDIG +Y+
Sbjct: 147 RIVESARRPGVTRQLRWVRVSQDLELLDTPGVLPAKLNNQEAAYKLAICDDIGTAAYENQ 206
Query: 181 DVAAILVQMLARI----PTVGI---TALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQA 233
VA L++++ + P G LQ RY++D ++ A GD +
Sbjct: 207 LVATALIELIQGLESSEPKPGFLPNQVLQTRYQLDPTSITAADYLATAAEQRHQGDLERM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++L DFRKG G ++LE P
Sbjct: 267 AQQVLNDFRKGLLGKVTLEVP 287
>gi|37523435|ref|NP_926812.1| ribosomal biogenesis GTPase [Gloeobacter violaceus PCC 7421]
gi|35214439|dbj|BAC91807.1| glr3866 [Gloeobacter violaceus PCC 7421]
Length = 296
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 161/255 (63%), Gaps = 3/255 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DARI S+ H + + G R R++VLNR DMI +W +FA +G
Sbjct: 30 VDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADMIPQGMLRSWLKWFAARGEAAY 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N Q G G + + A+ A VN +R +G+ PRAVR ++G+PNVGKS+LINRL+ +
Sbjct: 90 PTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVRVAVIGFPNVGKSALINRLVGK 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +A +PGVTR L+WVR ++ LDSPGI+P R++DQ AA KLAICDDIG+ +Y +
Sbjct: 150 RAVESAAKPGVTRALRWVRIADVIDLLDSPGILPPRLNDQRAAAKLAICDDIGQAAYTTS 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
VA + ++L P V L R+ D + +++++A H ++G+ +AA +L D
Sbjct: 210 RVATLAAELL--TPLVP-RRLAERFGADPLAVTAEEWLEQVARHKYHGNLDRAAEALLGD 266
Query: 241 FRKGKFGWISLERPP 255
FR+G+ G I+LE PP
Sbjct: 267 FRRGQLGAIALEAPP 281
>gi|194476822|ref|YP_002049001.1| hypothetical protein PCC_0350 [Paulinella chromatophora]
gi|171191829|gb|ACB42791.1| hypothetical protein PCC_0350 [Paulinella chromatophora]
Length = 309
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 171/262 (65%), Gaps = 7/262 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDAR+P S+ +P + +W +++ +LV+NR+DMIS + W + G +
Sbjct: 40 VDLVIEVRDARVPFSSGYPDLKKWFLDKQYLLVINRQDMISESAMKCWDWWLRSIGEAPL 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ N ++G G +L +A +N +R+++G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 100 WCNARIGTGVKQLQLVAIQAGDIINERRQNRGMKPRRVRAIVLGFPNVGKSALINRLVRK 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R G+TR L W+R ++L+ LDSPG++P ++ DQ A+ LAICD+IGE SY+
Sbjct: 160 KIAVSARRAGITRSLNWIRVSEELDLLDSPGVLPPKLEDQRGALLLAICDNIGEASYNKE 219
Query: 181 DVAAILVQMLAR---IPTVG--ITALQNRYKIDMD-GTCGKTFVQKLAL-HLFNGDTHQA 233
+VA L+Q+L + IP +G I +L RY +D+ T G K+A H +G+ +
Sbjct: 220 EVAIGLLQVLQQLSVIPEIGLSINSLGKRYVLDIPVSTVGSMNWLKIAANHHTSGNVTRM 279
Query: 234 AFRILTDFRKGKFGWISLERPP 255
A R+L DFR+ G I+LE PP
Sbjct: 280 AQRLLDDFRRSNLGSIALELPP 301
>gi|33866857|ref|NP_898416.1| ribosomal biogenesis GTPase [Synechococcus sp. WH 8102]
gi|33639458|emb|CAE08842.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 288
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +D+WL ++ +LV+NR DM++ A R AW +F +G + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLDRWLKGKQHLLVINRRDMVTPAAREAWEAWFKGRGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PR VRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVKQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA +Q+L + V I L++RY I + G +++ A +GDT +
Sbjct: 207 LVAQAFLQLLIDLQQQQASGVAIPVLESRYGIPVQGETADPPYWLEAAAQRHTSGDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGSIALELP 287
>gi|158335763|ref|YP_001516935.1| ribosomal biogenesis GTPase [Acaryochloris marina MBIC11017]
gi|158306004|gb|ABW27621.1| GTP binding domain protein [Acaryochloris marina MBIC11017]
Length = 291
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 165/262 (62%), Gaps = 7/262 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP S+ HP + +W+G++ +LVLNR D+++ W +G
Sbjct: 27 VDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVLNRIDLVTPVSHQLWLDALKAEGQVPH 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ Q G G + + A+ + +N +RR++G+ PR VRA ++G+PNVGKS+LINRLLKR
Sbjct: 87 CTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMRPRPVRAVVLGFPNVGKSALINRLLKR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A RPGVTR L+WVR +DLE LD+PG++P ++++Q AA KLAICDDIG +Y+
Sbjct: 147 RIVESARRPGVTRQLRWVRVSQDLELLDTPGVLPAKLNNQEAAYKLAICDDIGTAAYENQ 206
Query: 181 DVAAILVQMLARIPT-------VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQA 233
VA L++++ + + + LQ RY++D ++ A GD +
Sbjct: 207 LVATALIELIQGLESSKSKPGFLPNQVLQTRYQLDPTSITAADYLATAAEQRHQGDLERM 266
Query: 234 AFRILTDFRKGKFGWISLERPP 255
A ++L DFRKG G ++LE PP
Sbjct: 267 AQQVLNDFRKGLLGKVTLELPP 288
>gi|87123535|ref|ZP_01079386.1| hypothetical protein RS9917_06730 [Synechococcus sp. RS9917]
gi|86169255|gb|EAQ70511.1| hypothetical protein RS9917_06730 [Synechococcus sp. RS9917]
Length = 288
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 169/261 (64%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP +T HP +++W+ ++ +LV+NR DM++ R+AW +F QG +
Sbjct: 27 VDLVIEVRDARIPRATGHPHLNRWINGKQHLLVINRRDMVTAEARDAWQQWFKGQGQSTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G +L + A +N +RR++G+ PRAVRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQLQQAAIRAGDQLNERRRNRGMRPRAVRALTLGFPNVGKSALINRLVKQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQRAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
A +++LA + V + L+ RY I + G ++Q A + DT +
Sbjct: 207 WAAQSFLRLLAVLEPRQGSGVSLPLLETRYGIPLAGDTADPALWIQAAAARHTSADTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ R++ DFRK G I+LE P
Sbjct: 267 SQRLMDDFRKSVLGSIALELP 287
>gi|254430864|ref|ZP_05044567.1| hypothetical protein CPCC7001_755 [Cyanobium sp. PCC 7001]
gi|197625317|gb|EDY37876.1| hypothetical protein CPCC7001_755 [Cyanobium sp. PCC 7001]
Length = 323
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 169/264 (64%), Gaps = 10/264 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP + +W+G++ +L LNR DMI R AW+ +F QG V
Sbjct: 49 VDLVIEVRDARIPLATGHPRLQRWIGSKPHLLALNRVDMIPREAREAWSAWFKHQGQVVW 108
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G +L + A + +N +R +G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 109 WCDAKAGTGVKQLQQAAIRAGAALNRRRVDRGMRPRPVRALMLGFPNVGKSALINRLVRQ 168
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD-- 178
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA++LA+CDDIG+ +YD
Sbjct: 169 KVVDSARRAGVTRSLRWVRLGQDLDLLDAPGVLPPRLDDQQAALRLALCDDIGQAAYDNE 228
Query: 179 -VADVAAILVQMLARIPTVGITA--LQNRYKIDMD-----GTCGKTFVQKLALHLFNGDT 230
A L+ +L +P G+ L+ RY + ++ + +++ A +GD
Sbjct: 229 AAAVAFLQLLVLLQAVPAAGVPENLLECRYGLPLEPLPNGAPDAEGWLRAAAERHTSGDK 288
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+ A ++L DFR + G ++LE P
Sbjct: 289 LRMATKLLDDFRCSRLGGLALELP 312
>gi|33864372|ref|NP_895932.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9313]
gi|33641152|emb|CAE22282.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 296
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 171/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP++T HP + +W+ ++ +LV+NR DMIS A R +W +F Q
Sbjct: 34 IDLVIEVRDARIPIATAHPQLQRWIKGKQHLLVINRRDMISSAARQSWDRWFRDQAQTPW 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RRS+G+ PR VRA +G+PNVGKS+LINRL+++
Sbjct: 94 WCDAKAGTGVKQVQQAAIRAGDQLNQRRRSRGMRPRPVRALTLGFPNVGKSALINRLVRQ 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YDV
Sbjct: 154 KVVESARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDVE 213
Query: 181 DVAAILVQ---MLARIPTVGITA--LQNRYKIDM--DGTCGKTFVQKLALHLFNGDTHQA 233
VA L++ +L + G+ A L+ RY I++ D ++ +A +GDT +
Sbjct: 214 LVALALLETLTVLEKQAAAGVVAGILKQRYGINLAGDQADAHAWLMTVAERHTSGDTERM 273
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFR+ G I+LE P
Sbjct: 274 AQRLLDDFRRALLGPIALELP 294
>gi|78778582|ref|YP_396694.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9312]
gi|78712081|gb|ABB49258.1| Ras superfamily GTP-binding protein YlqF [Prochlorococcus marinus
str. MIT 9312]
Length = 290
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPLST HP +++W+ N+K ILV+NR DMIS N+W +F + +
Sbjct: 27 VDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISHNTINSWNNWFNAKDQYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G+G ++ + AK S ++ +R S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A + GVTR L+W++ ++ LD+PG+IP + DQ +A+ LA+CDDIGE +Y++
Sbjct: 147 RVVDSARKAGVTRNLRWIKLDSGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA +++++ + + + + NRY +D+ ++ + A +GD +
Sbjct: 207 SVAIEFIKIISTLNKDKNANISVKKISNRYGVDITKGFKSPSAWIDEAASKHTSGDKRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++L D+R G I+LE P
Sbjct: 267 SHKLLEDYRNQMLGKIALEVP 287
>gi|302853707|ref|XP_002958367.1| hypothetical protein VOLCADRAFT_32516 [Volvox carteri f.
nagariensis]
gi|300256320|gb|EFJ40589.1| hypothetical protein VOLCADRAFT_32516 [Volvox carteri f.
nagariensis]
Length = 287
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 7/262 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EVRDARIP+ST HP + QW+G + R+L++NR D +S D AW +F +V
Sbjct: 26 VDVVLEVRDARIPISTHHPQIAQWVGVKPRLLLMNRADEVSERDLAAWRAHFRATRQQVF 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++G+ G G + + +A+ +N KR +GL PR VRA ++G+PN+GKS++INRL+ R
Sbjct: 86 WTDGRSGDGVRGVKKELLKVAAQLNAKRAKRGLQPRPVRACVIGFPNIGKSAIINRLVNR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +AP+PGVTR L+WVR + L+ LD+PG+IP DQ AA +LA+C+DIGE +Y +
Sbjct: 146 RAVASAPKPGVTRQLRWVRVDEQLDLLDAPGVIPASFRDQLAAQRLAMCNDIGEAAYLAS 205
Query: 181 DVAAILVQMLARI-------PTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQA 233
VAA LV + ++ A D+ GK FV LA+ + GD +A
Sbjct: 206 AVAAALVLRIKQLAAGESAAAAATAAAAAATAAADLATPAGKDFVVALAVRQYGGDVERA 265
Query: 234 AFRILTDFRKGKFGWISLERPP 255
R+LTD+R G G +LE PP
Sbjct: 266 GVRLLTDYRSGALGRFALELPP 287
>gi|159902753|ref|YP_001550097.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9211]
gi|159887929|gb|ABX08143.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9211]
Length = 287
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 164/262 (62%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP+ST+HP +++W+ N+K +LV+NR DMI+ W +F +G
Sbjct: 27 VDLVIEVRDARIPISTSHPHLEKWITNKKHLLVINRRDMITNKAIKEWDQWFKSEGKTPW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ N + G G + A L ++N +R+S+G+ RAVRA +G+PNVGKS+LINRL +
Sbjct: 87 WCNAKNGNGVAMIKEAAIRLGDELNERRKSRGMRSRAVRALTLGFPNVGKSALINRLTMQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ ++ R GVT+ L+WVR G+ L+ LD+PG++P R+ +Q AA+ LAICDDIG+ +YDV
Sbjct: 147 KVVESSRRAGVTKSLRWVRLGQQLDLLDAPGVLPPRLENQKAALLLAICDDIGQAAYDVE 206
Query: 181 DVAAILVQMLARIPTV----GITALQNRYKIDMDGTCGKTFVQKLA----LHLFNGDTHQ 232
V +++L+ + +L+ RY I ++ C LA +H + D +
Sbjct: 207 SVGIAFLRLLSALEETYSGFNKESLKERYGIALE-NCEPNVHDWLANSASVHTSD-DLRR 264
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A ++L DFRK G ISLE P
Sbjct: 265 MAQKLLDDFRKLLLGQISLELP 286
>gi|126695552|ref|YP_001090438.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9301]
gi|126542595|gb|ABO16837.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9301]
Length = 290
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 167/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPLST HP +++W+ N+K ILV+NR DM+S N+W +F + +
Sbjct: 27 VDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMVSPHTINSWNKWFNAKDQYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G+G ++ + AK S ++ +R S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A + GVTR L+W++ ++ LD+PG+IP + DQ +A+ LA+CDDIGE +Y++
Sbjct: 147 RVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI---PTVGITALQ--NRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA +++++ + I+A Q NRY +D+ ++ + A +GDT +
Sbjct: 207 SVAIEFIKIISTLNKDKNANISAKQISNRYGVDITKGFKSPSAWINEAASKHTSGDTRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++L D+R G I+LE P
Sbjct: 267 SHKLLEDYRNQMLGKIALEVP 287
>gi|124024487|ref|YP_001018794.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9303]
gi|123964773|gb|ABM79529.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9303]
Length = 289
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 171/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP++T HP + +W+ ++ +LV+NR DMIS A R +W +F Q
Sbjct: 27 IDLVIEVRDARIPIATAHPQLQRWIKGKQHLLVINRRDMISSAARQSWDRWFRDQAQTPW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RRS+G+ PR VRA +G+PNVGKS+LINRL+++
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNQRRRSRGMRPRPVRALTLGFPNVGKSALINRLVRQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +YDV
Sbjct: 147 KVVESARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDVE 206
Query: 181 DVAAILVQMLA---RIPTVGITA--LQNRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA L++ L+ + G+ A L+ RY I++ G ++ +A +GDT +
Sbjct: 207 LVALALLETLSVLEKQAAAGVVAGVLEQRYGINLAGEKADAHAWLMTVAERHTSGDTGRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFR+ G I+LE P
Sbjct: 267 AQRLLDDFRRALLGPIALELP 287
>gi|254527063|ref|ZP_05139115.1| hypothetical protein P9202_1716 [Prochlorococcus marinus str. MIT
9202]
gi|221538487|gb|EEE40940.1| hypothetical protein P9202_1716 [Prochlorococcus marinus str. MIT
9202]
Length = 290
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 166/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP+ST HP +++W+ N+K ILV+NR DMIS N+W +F + +
Sbjct: 27 VDLVIEVRDARIPMSTGHPHLNKWINNKKHILVINRSDMISPNTINSWNKWFNAKDQYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G+G ++ + AK S ++ +R S+G+L R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKKGIGIKEICKSAKESRSSIDERRLSRGMLIRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A + GVTR L+W++ ++ LD+PG+IP + DQ +A+ LA+CDDIGE +Y++
Sbjct: 147 RVVDSARKAGVTRNLRWIKLEIGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA +++++ + + + + NRY +D+ ++ + A +GD +
Sbjct: 207 SVAIGFIKIISTLNKDKNANISVKKISNRYGVDIAKGFKNPSAWIDEAAAKHTSGDKRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++L D+R G I+LE P
Sbjct: 267 SHKLLEDYRNQMLGKIALEVP 287
>gi|78213966|ref|YP_382745.1| ribosomal biogenesis GTPase [Synechococcus sp. CC9605]
gi|78198425|gb|ABB36190.1| GTP-binding [Synechococcus sp. CC9605]
Length = 288
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ +LV+NR DM++ A + AW +F QG K +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLLVINRRDMVTAAAKEAWEAWFKAQGQKTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PR VRA +G+PNVGKS+LINRL+++
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVRQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA++LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALRLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA +Q+L + + V I LQ RY I + G ++ A +G+T +
Sbjct: 207 LVAQAFLQLLLDVESQAAAGVTIPLLQERYGIPLSGETADPAFWLDAAAARHTSGETARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGSIALELP 287
>gi|123967749|ref|YP_001008607.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. AS9601]
gi|123197859|gb|ABM69500.1| Predicted GTPases [Prochlorococcus marinus str. AS9601]
Length = 290
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPLST HP +++W+ N+K ILV+NR DMIS N+W +F + +
Sbjct: 27 VDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISPNTINSWNKWFNSKDQYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G+G ++ + AK S ++ +R S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A + GVTR L+W++ ++ LD+PG+IP + DQ +A+ LA+CDDIGE +Y++
Sbjct: 147 RVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA +++++ + + + + NRY +D+ ++ + A +GD +
Sbjct: 207 SVAIGFIKIISTLNKDKNANISVKQISNRYGVDITKGFKSPSAWIDEAASKHTSGDKRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++L D+R G I+LE P
Sbjct: 267 SHKLLEDYRNQMLGKIALEVP 287
>gi|116072000|ref|ZP_01469268.1| GTP-binding protein [Synechococcus sp. BL107]
gi|116065623|gb|EAU71381.1| GTP-binding protein [Synechococcus sp. BL107]
Length = 292
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 170/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ +LV+NR DM++ AW +F +G + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLLVINRRDMVTKEAWAAWEQWFKAKGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PRAVRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRAVRALTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +Y+
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYNGE 206
Query: 181 DVAAILVQMLA-----RIPTVGITALQNRYKIDMDGTCGK--TFVQKLALHLFNGDTHQA 233
VA +Q+L + V ++ L+ RY I + G +++ A + DT +
Sbjct: 207 LVAQAFLQLLIDSSERKASGVVLSVLETRYGIPVAGQTLDPLYWLEAAAARHTSNDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGNIALELP 287
>gi|33860754|ref|NP_892315.1| ribosomal biogenesis GTPase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633696|emb|CAE18653.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 288
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 164/261 (62%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPLST HP ++QW+ N+K ILV+NR DMIS W +F K +
Sbjct: 27 VDLVIEVRDARIPLSTGHPHLNQWIRNKKHILVINRADMISTETITNWNKWFKKDNIYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + AK ++ KR S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKNGKGIKEICKSAKESRLSIDNKRLSRGMKVRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVTR L+W+R ++ LD+PG+IP + +Q +A+ LA+CDDIGE +Y++
Sbjct: 147 KVVESARKAGVTRNLRWIRLDNGIDLLDAPGVIPPNLENQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNGDTHQA 233
VA ++++ ++ + ++ + +RY +D+ + ++ +AL +GD +
Sbjct: 207 SVAIEFIKIIFKLKEDKNANISLSKISDRYGVDILKNFDNPHEWIDLVALKHTSGDKRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++L D+R G ISLE P
Sbjct: 267 AHKLLEDYRNQMLGKISLEVP 287
>gi|317968171|ref|ZP_07969561.1| GTPase YlqF [Synechococcus sp. CB0205]
Length = 306
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 168/267 (62%), Gaps = 13/267 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP +T HP + +W+ ++ +LVLNR DMI +A R AW +F QG
Sbjct: 40 VDLVIEVRDARIPTATGHPRLQRWIQGKQHLLVLNRRDMIPVAAREAWDAWFRGQGQTPW 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+S+ + G G +L + A +N +RR++G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 100 WSDAKAGTGVKQLQQAAIRAGDSLNERRRNRGMRPRPVRALMLGFPNVGKSALINRLVRQ 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA++LA+CDDIG+ +YD
Sbjct: 160 KVVDSARRAGVTRSLRWVRLGQDLDLLDAPGVLPPRLDDQLAALRLALCDDIGQAAYDGE 219
Query: 181 DVAAILVQMLARIPTVGITA-----LQNRYKIDMDGTCGK--------TFVQKLALHLFN 227
A V ML + + L+ RY I ++ G+ ++ A +
Sbjct: 220 AAAMAFVHMLTALEATETSGVKPGLLERRYGIPVETLPGEGTPKPDVHGWLTGAAERHTS 279
Query: 228 GDTHQAAFRILTDFRKGKFGWISLERP 254
GDT + A R L DFR+G G I+LE P
Sbjct: 280 GDTVRMAQRFLDDFRRGMLGPIALELP 306
>gi|428178520|gb|EKX47395.1| hypothetical protein GUITHDRAFT_55778, partial [Guillardia theta
CCMP2712]
Length = 285
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 160/265 (60%), Gaps = 12/265 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRK--RILVLNREDMISMADRNAWATYFAKQ-GT 57
+DVV+EVRDARIP+ST+HP++D WL NRK RI+ +++ DM+ + + W + T
Sbjct: 22 VDVVVEVRDARIPISTSHPMIDNWLKNRKATRIICMSKVDMVPASSISMWKAFLENSMNT 81
Query: 58 KVIFSNGQLGM-GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 116
V+F N + G G + L R K VN +R +G+ PR V+ ++GYPNVGKS+L+NR
Sbjct: 82 SVVFMNCKEGGDGLIHLKRAIKKEREKVNTRREERGIAPRNVKVAVIGYPNVGKSALLNR 141
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
L + + R GVT+ L+W R G DL LDSPGIIP ++ Q A+ LAICDDIG+
Sbjct: 142 LAGMKKAKSENRAGVTKSLQWSRVEGYDL--LDSPGIIPAKLLTQEIALHLAICDDIGKA 199
Query: 176 SYDVADVAAILVQMLARI----PT-VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDT 230
SYD VAA LV + ++ P+ V + Q RY + + G+ ++ +LA F G
Sbjct: 200 SYDTILVAAHLVDEIRKVGFSLPSYVDLGGFQRRYNLPIGTMSGEEYIFRLAHTKFFGLE 259
Query: 231 HQAAFRILTDFRKGKFGWISLERPP 255
AA RIL DFR G+ G +LE PP
Sbjct: 260 LPAAERILDDFRGGRLGVFALEPPP 284
>gi|78185709|ref|YP_378143.1| ribosomal biogenesis GTPase [Synechococcus sp. CC9902]
gi|78170003|gb|ABB27100.1| Ras superfamily GTP-binding protein YlqF [Synechococcus sp. CC9902]
Length = 292
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 169/261 (64%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ +LV+NR DM++ AW +F +G + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLLVINRRDMVTKEAWAAWEQWFKAKGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PRAVRA +G+PNVGKS+LINRL+K+
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDQLNERRRNRGMRPRAVRALTLGFPNVGKSALINRLVKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA+ LA+CDDIG+ +Y+
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYNGE 206
Query: 181 DVAAILVQMLA-----RIPTVGITALQNRYKIDMDGTCGK--TFVQKLALHLFNGDTHQA 233
VA +Q+L + V ++ L RY I + G +++ A + DT +
Sbjct: 207 LVAQAFLQLLIDSSERKASGVVLSVLGTRYGIPVAGQTLDPLYWLEAAAARHTSNDTARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGNIALELP 287
>gi|260434269|ref|ZP_05788239.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. WH
8109]
gi|260412143|gb|EEX05439.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. WH
8109]
Length = 288
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPL+T HP +++WL ++ ++V+NR DM++ A + AW +F QG + +
Sbjct: 27 VDLVIEVRDARIPLATGHPHLNRWLKGKQHLMVINRRDMVTAAAKEAWEAWFKAQGQRTV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR++G+ PR VRA +G+PNVGKS+LINRL+++
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGDHLNERRRNRGMRPRPVRALTLGFPNVGKSALINRLVRQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA++LA+CDDIG+ +YD
Sbjct: 147 KVVASARRAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALRLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARIPT-----VGITALQNRYKIDMDGTCGKT--FVQKLALHLFNGDTHQA 233
VA +Q+L + + V I LQ RY I + G ++ A +G+T +
Sbjct: 207 LVAQAFLQLLLDVESQAAAGVTIPLLQERYGIPLSGETADPALWLDAAAARHTSGETARM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L DFRK G I+LE P
Sbjct: 267 AQRLLDDFRKSALGSIALELP 287
>gi|157412551|ref|YP_001483417.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9215]
gi|157387126|gb|ABV49831.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9215]
Length = 290
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIPLST HP +++W+ N+K ILV+NR DMIS N+W +F + +
Sbjct: 27 VDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRLDMISPNTINSWNKWFNAKDQYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G+G ++ + AK S ++ +R S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKRGIGIKEICKSAKDSRSSIDERRLSRGMRIRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +A + GVTR L+W++ ++ LD+PG+IP + DQ +A+ LA+CDDIGE +Y++
Sbjct: 147 RVVDSARKAGVTRNLRWIKLEIGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDG--TCGKTFVQKLALHLFNGDTHQA 233
VA +++++ + + + + NRY +D+ ++ + A +GD +
Sbjct: 207 SVAIGFIKIISTLNKDKNANISVKKISNRYGVDIAKGFKNPSAWIDEAAAKHTSGDKRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++L D+R G I+LE P
Sbjct: 267 SHKLLEDYRNQMLGKIALEVP 287
>gi|123965458|ref|YP_001010539.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. MIT 9515]
gi|123199824|gb|ABM71432.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9515]
Length = 288
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IEVRDARIPLST HP ++QW+ N+K ILV+NR DMI+ W T+F K +
Sbjct: 27 VDLIIEVRDARIPLSTGHPHLNQWITNKKHILVINRADMIAPETIINWNTWFKKYDIYPL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + AK ++ +R S+G+ R +RA +G+PNVGKS+LINR+ K+
Sbjct: 87 WCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMKVRPIRALTLGFPNVGKSALINRIAKK 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A + GVTR L+W+R ++ LD+PG+IP + +Q +A+ LA+CDDIGE +Y++
Sbjct: 147 KVVESARKAGVTRNLRWIRLDGGIDLLDAPGVIPPNLENQKSALNLALCDDIGEAAYEIE 206
Query: 181 DVAAILVQMLARI-----PTVGITALQNRYKIDMDGT--CGKTFVQKLALHLFNGDTHQA 233
VA ++++ ++ + + + NRY +D+ + ++ +AL +GD +
Sbjct: 207 SVAIEFLKIIFKLKEDKNANISLKKISNRYGVDILKSFDSPHEWIDLVALKHTSGDRRRM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A+++L D+R G I+LE P
Sbjct: 267 AYKLLEDYRNQMLGKIALEVP 287
>gi|318040687|ref|ZP_07972643.1| GTPase YlqF [Synechococcus sp. CB0101]
Length = 321
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 172/289 (59%), Gaps = 35/289 (12%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP +T HP + +W+ ++ +LVLNR DMI A ++AW +F QG
Sbjct: 33 VDLVIEVRDARIPTATGHPRLQRWISGKQHLLVLNRRDMIPKAAQDAWDAWFRSQGQTPW 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+S+ + G G +L + A +N +RRS+G+ PR VRA ++G+PNVGKS+LINRL+++
Sbjct: 93 WSDAKAGTGVKQLQQAAIRAGDALNERRRSRGMRPRPVRALMLGFPNVGKSALINRLVRQ 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+DL+ LD+PG++P R+ DQ AA++LA+CDDIG+ +YD
Sbjct: 153 KVVDSARRAGVTRSLRWVRLGQDLDLLDAPGVLPPRLDDQLAALRLALCDDIGQAAYDGE 212
Query: 181 DVAAILVQMLARIPTVGITA-----LQNRYKI--------------------DMDGTC-- 213
VA VQMLA + + L++RY + + DG
Sbjct: 213 AVAMAFVQMLAGLEGTAASGVKPGLLESRYGVPVPPLESAIPITGHSVQAVQNQDGAPVG 272
Query: 214 --------GKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 254
+++ A +GDT + A R L DFR+G G ++LE P
Sbjct: 273 PARPLRPDAHGWLEAAAARHTSGDTARMAQRFLDDFRRGMLGPLALELP 321
>gi|148243330|ref|YP_001228487.1| ribosomal biogenesis GTPase [Synechococcus sp. RCC307]
gi|147851640|emb|CAK29134.1| Predicted GTPase [Synechococcus sp. RCC307]
Length = 287
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 163/261 (62%), Gaps = 7/261 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEVRDARIP++T HP + +W+ ++ +LV+NR DM+S R AW +F QG
Sbjct: 27 VDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVINRRDMVSAQARQAWDEWFRSQGQTPW 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + G G ++ + A +N +RR +G+ PR VRA +G+PNVGKS+LINRL+++
Sbjct: 87 WCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMRPRPVRALTLGFPNVGKSALINRLVRQ 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +A R GVTR L+WVR G+ L+ LD+PG++P R+ +Q AA+ LA+CDDIG+ +YD
Sbjct: 147 KVVDSARRAGVTRTLRWVRLGQSLDLLDAPGVLPPRLDNQQAALHLALCDDIGQAAYDGE 206
Query: 181 DVAAILVQMLARI---PTVGITA--LQNRYKIDMDGTCGKTFVQKLALHL--FNGDTHQA 233
VA ++ML + P + L+ RY I ++ G A L +G + +
Sbjct: 207 GVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAVEAGPGAANAWLSAAALKHTSGQSERM 266
Query: 234 AFRILTDFRKGKFGWISLERP 254
A R+L D+R+ G I+LE P
Sbjct: 267 AQRLLDDYRRSVLGPIALELP 287
>gi|449015964|dbj|BAM79366.1| GTP-binding protein of Nug1 family [Cyanidioschyzon merolae strain
10D]
Length = 434
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 159/282 (56%), Gaps = 31/282 (10%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--------------DRN 46
+DVVIEV DARIP +T + LG + R++ LNR DM+ +A DR
Sbjct: 149 IDVVIEVVDARIPRTTFPQFVHDILGTKSRVIALNRTDMVPVAASRHWLAAFRRGALDRA 208
Query: 47 AWATYFAKQGTKVIF-SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 105
+ A+ Q + ++G+LG G +L R A VN +R +GLL R +R ++GY
Sbjct: 209 SAASQVEHQANAPCYPTDGKLGTGIPQLRRACIAAGKTVNERRARRGLLSRPIRVAVIGY 268
Query: 106 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIK 165
PNVGKS++INRL RR +A RPGVTR L+WVR +DLE LD+PG+IP ++ +Q AA +
Sbjct: 269 PNVGKSAVINRLCNRRAAVSAARPGVTRQLQWVRIAQDLELLDTPGVIPPKLEEQDAASR 328
Query: 166 LAICDDIGERSYDVADVAAILVQMLARI--------PTVGI-------TALQNRYKIDMD 210
LA+CDDIGE +YDV +A++L+ L + P++ + LQ+RY D
Sbjct: 329 LAMCDDIGETAYDVERIASLLIDTLLTLDGSSWIEHPSLPANERHAVRSILQHRYGF-TD 387
Query: 211 GTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLE 252
G+ F+ A D + A R+LTDFR+ G I LE
Sbjct: 388 FQNGEDFLYLAARQCTQRDVDKMARRLLTDFRQLHLGRICLE 429
>gi|323451733|gb|EGB07609.1| hypothetical protein AURANDRAFT_27328 [Aureococcus anophagefferens]
Length = 389
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 147/269 (54%), Gaps = 17/269 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE RDARI +T HP + +W+G R R++V D+ W ++ V
Sbjct: 73 VDVVIEARDARIGATTAHPDVSEWIGARPRVVVFTFADLAPANVVRDWKEELSRD-VPVF 131
Query: 61 FSNGQLGMGTMKLSRLAKALASD---VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
F + + G G L + L VN KR KG++PRA R ++GYPNVGKS+LIN+L
Sbjct: 132 FVDAKRG-GAKALQGIRNELTKAGRVVNEKRAKKGIMPRAARVAVIGYPNVGKSALINKL 190
Query: 118 LKRRMCPAAPRPGVTRVLKWVRF-----GKDL--EFLDSPGIIPMRISDQAAAIKLAICD 170
R+ + + GVTR L WVR GK L E LDSPGIIP + +Q A +LAIC
Sbjct: 191 AGRKAAKSENKAGVTRSLNWVRSKPSTQGKGLPFELLDSPGIIPAKQLNQRMAARLAICG 250
Query: 171 DIGERSYDVADVAAILVQMLA-----RIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL 225
DIG+ SYD VA LV+ L R G +L ++Y +D D +V +LA
Sbjct: 251 DIGDASYDTRLVAEALVEELTTRRDERYARDGGASLLSKYGVDPDVFAPDVYVDELADLR 310
Query: 226 FNGDTHQAAFRILTDFRKGKFGWISLERP 254
+ GD AA ILTDFR G+ G ++LE P
Sbjct: 311 YEGDAGTAAMAILTDFRAGRLGKVALEGP 339
>gi|15615039|ref|NP_243342.1| hypothetical protein BH2476 [Bacillus halodurans C-125]
gi|4514314|dbj|BAA75361.1| YlqF [Bacillus halodurans]
gi|10175096|dbj|BAB06195.1| BH2476 [Bacillus halodurans C-125]
Length = 284
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 153/260 (58%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P+MD+ + ++ R+++LN++D+ + W +F + G V+
Sbjct: 24 IDVVIELLDARVPLSSRNPMMDEIVAHKPRLVLLNKDDLADPSKTKEWTRFFEEGGATVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++S + LA + K+R+KG+ PRA+RA I+G PNVGKS+LINRL +
Sbjct: 84 PINAQTGQGVSRISPACQTLAQALIEKQRAKGMKPRAIRAMILGIPNVGKSTLINRLASK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ RPG+T+ +W++ GK+LE LD+PGI+ + DQA +LA I + D
Sbjct: 144 RIAKVGDRPGITKQQQWIKVGKELELLDTPGILWPKFDDQATGFRLAATGAIKDELLDFQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQAA 234
DVA +++ + + L +RYK++ DG + K HL +G D + A
Sbjct: 204 DVALFVLRYMREMYP---DRLMDRYKLNELPEDGVTLFDAIGKKRGHLLSGGYIDYDKTA 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL + R G G I+LE P
Sbjct: 261 EMILRELRAGTLGRITLEVP 280
>gi|223994459|ref|XP_002286913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978228|gb|EED96554.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 150/265 (56%), Gaps = 15/265 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT--- 57
+DVVIEVRD+R P +T HP + +W R R++VL R D ++ R++W + + G
Sbjct: 24 VDVVIEVRDSRAPKATAHPSVGKWTAGRPRVVVLTRMDTVTSRSRDSWREAYERLGADRW 83
Query: 58 ------KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKS 111
+++F + + G GT +SR VN +R+ +GL R +R GI+G+PNVGKS
Sbjct: 84 EDSLVEEILFVDAKRGQGTHAISRAVYKAGRHVNERRKRRGLNDRPLRVGIIGFPNVGKS 143
Query: 112 SLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDD 171
+LINRLL ++ A PG+TR L+W+R G E LDSPGIIP + DQ+ A+ LA C+
Sbjct: 144 ALINRLLGKKRARTANTPGITRSLQWIRSG--FELLDSPGIIPSDMLDQSDALLLAACNS 201
Query: 172 IGERSYDVADVAAIL---VQMLARIPTVGITA-LQNRYKIDMDGTCGKTFVQKLALHLFN 227
IG +YD VAA L +Q L + I A L I+ G + +A +
Sbjct: 202 IGVGAYDNQAVAAYLCERIQSLVIMEKDYIAAPLWRNRCIERYGFDPLDMLFIVADNTCK 261
Query: 228 GDTHQAAFRILTDFRKGKFGWISLE 252
GD AA +IL DFR G+ G ISL+
Sbjct: 262 GDPENAARKILQDFRMGRMGPISLQ 286
>gi|402300897|ref|ZP_10820338.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
gi|401723983|gb|EJS97390.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
Length = 287
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P++D+ + ++ R+++LN+ D+ + W +YF K G V+
Sbjct: 24 IDVVIELVDARIPLSSRNPMIDKLVEHKPRLILLNKADLADESRTAKWKSYFEKLGYSVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G GT K+S + LA+ + K ++KG+ PRA+RA I+G PNVGKS+LINRL +
Sbjct: 84 VINSQNGKGTEKISGECQKLATPMLEKMKAKGMKPRAIRAMILGIPNVGKSTLINRLAAK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W++ GK LE LD+PGI+ + DQ +LA I + D
Sbjct: 144 RTAQVGDRPGVTKRQQWIKVGKQLELLDTPGILWPKFEDQQTGFRLAATGAIKDEILDFQ 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+A V L P LQ RYK+D T + ++ L +G D +
Sbjct: 204 DIALFAVTYLREHYP----KRLQERYKLDELSTDNVELLDQIGEKRGFLASGGYIDYDKV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A IL + R G G +S E P
Sbjct: 260 AETILRELRGGLLGRLSFEVP 280
>gi|317129226|ref|YP_004095508.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
gi|315474174|gb|ADU30777.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
Length = 282
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 155/262 (59%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R+++LN+ D+ + W YF +G V
Sbjct: 24 IDVVIELVDARVPLSSRNPMIDELVKSKPRLILLNKSDLADQKVTDLWVKYFETKGFAVQ 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + + LA + K R+KG+ PRAVRA I+G PNVGKS++INRL +
Sbjct: 84 QINAQKGTGVKKIPAIVEKLAKPITDKMRAKGMNPRAVRALILGIPNVGKSTIINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +PGVT+ +W++ GK++E LD+PGI+ + D++ +LA+ I E +D
Sbjct: 144 RIATVGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDESVGFRLALTGAIKEELFDFN 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
+ L++ LA + P L++RYK++ + + + + KL L +G D +
Sbjct: 204 ETTLFLLRYLAEKYP----ERLKDRYKLENIPENIVEIYDHIGKLRGTLMSGGLIDYDRV 259
Query: 234 AFRILTDFRKGKFGWISLERPP 255
+ + +FR G G I+LE PP
Sbjct: 260 SEILFREFRSGMLGNITLEYPP 281
>gi|406983198|gb|EKE04440.1| Ribosome biogenesis GTP-binding protein YlqF [uncultured bacterium]
Length = 283
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 152/262 (58%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA-KQGTKV 59
+DV++E+ DARIPLS+++ +++ N+ R+LV+N+ D+ + W Y A K G KV
Sbjct: 25 VDVILEIIDARIPLSSSYFGIEKLTRNKPRLLVMNKADLADPELNSKWRDYMADKTGLKV 84
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ +N L + A L K +KG +PR VRA +G PNVGKSS+IN+L+K
Sbjct: 85 VLTNSNSSKDISTLIKTAIELGRPEIEKLVAKGRMPRPVRAMAIGMPNVGKSSIINKLVK 144
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
P+ GVTR +W+R LEF+D+PGIIPM++ +Q A+KLA+ + I E +YD+
Sbjct: 145 TAKAKVGPKAGVTRAAQWIRINPKLEFMDTPGIIPMKLDNQERAVKLAVVNSISENAYDL 204
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALHLFNG---DTHQAA 234
++A LV +L R P + L+ YK+ +M+ T + + L G D ++ A
Sbjct: 205 VEIAQELVNILYERYPDL----LKKHYKLEEMNETPSLIDIARSRKWLLPGEELDINRCA 260
Query: 235 FRILTDFRKGKFGWISLERPPR 256
+L+DFR G+ G I+LE P
Sbjct: 261 SIVLSDFRNGRIGRITLESVPE 282
>gi|288553082|ref|YP_003425017.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
gi|288544242|gb|ADC48125.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
Length = 285
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 12/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P+MD+ +G + R+++LN+ D+ WA YF ++G V+
Sbjct: 24 IDVVIELVDARLPLSSRNPMMDEIVGQKPRLVLLNKADLADPHMTKKWAGYFEEKGATVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+S + LAS + K +SKG+ PRA+R I+G PNVGKS+LINRL +
Sbjct: 84 AINAQTGKGVEKISGACRKLASPLIEKWKSKGMKPRAIRGMILGIPNVGKSTLINRLASK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKD-LEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
++ RPGVT+ +W++ G D LE LD+PGI+ + DQ +LA I + D
Sbjct: 144 KIAKVGDRPGVTKKQQWIKVGNDELELLDTPGILWPKFEDQVIGYRLAATGAIKDELLDF 203
Query: 180 ADVAA-ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQ 232
D+A +L M P + RYK++ G + L G D +
Sbjct: 204 QDIALFVLNYMKDHYP----ERIAERYKLEEVPEEGLALFDAIGKKRGCLLPGGYIDYDK 259
Query: 233 AAFRILTDFRKGKFGWISLERPPR 256
AA IL + R G G ++LE+PP
Sbjct: 260 AAEIILRELRSGTLGQVTLEQPPH 283
>gi|339009353|ref|ZP_08641925.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
gi|338773831|gb|EGP33362.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
Length = 298
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 152/261 (58%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + + R+++LN+ D+ + W YF +QG + +
Sbjct: 24 VDVVIELLDARLPLSSRNPMIDEIVAEKPRLILLNKADLADPSVTEMWIRYFKEQGLRTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G KL L + LASD+ KR +G+L RAVR I+G PNVGKSSLINRL KR
Sbjct: 84 PIDALSGRGVNKLPELCQELASDMLQKRADRGMLARAVRIMILGIPNVGKSSLINRLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RP VT+ +WV+ G LE LD+PGI+ + DQ ++LA I + D +
Sbjct: 144 SVAQTGDRPAVTKSQQWVKMGDTLELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFS 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKI-DM--DGTCGKTFVQKLALHLFNG---DTHQA 233
+VA V+ M+ P L++R+K+ D+ DG + K + +G D +A
Sbjct: 204 EVALYAVRYMMHYYP----ERLKDRFKLTDLPEDGVELLEMIGKKRGCMASGGYIDYDKA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ISLERP
Sbjct: 260 SELLLRELRSGKIGQISLERP 280
>gi|375085143|ref|ZP_09731852.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
gi|374567559|gb|EHR38772.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
Length = 293
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 136/260 (52%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+RDARIP S+ +P++ +G + ++ LN+ D+ N W YF G V+
Sbjct: 37 VDVVIELRDARIPNSSANPILKDLIGKKPHLIALNKIDLADNNINNKWEEYFTSMGKSVV 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L +A LA K +KG+ PR R IVG PNVGKSSLINRL
Sbjct: 97 KINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNARVMIVGIPNVGKSSLINRLSGS 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +W++ +L+ LD+PGI+ + D + LA I + YD+
Sbjct: 157 ASLKTADKPGVTRAKQWIKIKNNLDLLDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK---TFVQKLALHLFNG---DTHQAA 234
A IL L R+ ++ RYKID + T V K L G DT + A
Sbjct: 217 RAAEIL---LWRLKDDYAKNIKERYKIDEIPQTSEELFTLVGKKRGFLQKGGIVDTEKTA 273
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR GK G ISLERP
Sbjct: 274 IAVLKDFRAGKLGKISLERP 293
>gi|435853380|ref|YP_007314699.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
gi|433669791|gb|AGB40606.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
Length = 286
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 148/262 (56%), Gaps = 9/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P +DQ L +++RI+ LN++D+ + N W YF+ QG V
Sbjct: 24 IDVVIELLDARIPISSRNPDLDQLLEDKRRIIALNKKDLANQGLTNQWQEYFSNQGISVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G KL LA L D + ++G + +R IVG PNVGKS LIN+L ++
Sbjct: 84 AMNSLNGKGVKKLFALANQLMVDKQKELAAQGRKRKDIRLMIVGIPNVGKSQLINQLSQK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ + E LD+PG++ + +Q +KLAIC I E ++D
Sbjct: 144 GATRTGNKPGVTKAQQWIKLKEGFELLDTPGVLWPKFEEQEVGVKLAICGAIKEGNFDSE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+A LV+ML I L+ R+K+D + V + L +G D + +
Sbjct: 204 LLAYKLVEMLQDIAP---DKLKERFKLDYLTSDTYQLVADIGRKRGCLQSGGRIDRDRVS 260
Query: 235 FRILTDFRKGKFGWISLERPPR 256
IL +F++GK G ++LERPP+
Sbjct: 261 NIILREFKEGKLGRLTLERPPK 282
>gi|398814561|ref|ZP_10573242.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
gi|398036830|gb|EJL30039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
Length = 297
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 146/259 (56%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R+++LN+ D+ + W YF KQG + +
Sbjct: 24 IDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKADLADERATDEWIAYFRKQGIRTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G KL + K LA+D+ KR +G+ RA+R I+G PNVGKSSLINRL KR
Sbjct: 84 PIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGRAIRIMILGIPNVGKSSLINRLSKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RP VT+ +WV+ G LE LD+PGI+ + DQ ++LA I + D
Sbjct: 144 SVAATGDRPAVTKAQQWVKMGDTLELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFT 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRY----KIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+VA ++ M+ P I + + +++M GK + + N D +AA
Sbjct: 204 EVALFVISYMMHYYPERLIERFKLKELPEDRVEMLEEIGKK--RGCLVSGGNIDYDKAAE 261
Query: 236 RILTDFRKGKFGWISLERP 254
L + R GK G IS+ERP
Sbjct: 262 IFLRELRSGKLGTISVERP 280
>gi|307244391|ref|ZP_07526502.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
gi|306492210|gb|EFM64252.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
Length = 294
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 145/260 (55%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P +D+ +G++ RI++LN+ DM +AW YFAK+ K I
Sbjct: 36 VDVVIELLDARIPLSSKNPDIDRLVGDKPRIVLLNKADMCEKPAIDAWVAYFAKEDVKAI 95
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ KA+ + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 96 PINAMTGTGVNKVISECKAVTRSMMESLAEKGRRERAIRIMIVGVPNVGKSSLINKLSGR 155
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +WV+ D+E LD+PGI+ + DQ A+ LA I + ++
Sbjct: 156 RSTQTGDRPGVTKGKQWVKIRGDMELLDTPGILWPKFEDQEVALNLAFTRAIKD---EIL 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG----KTFVQKLALHLFNG--DTHQAA 234
DV + ++++ R+ + L RYK++ G G + +K L N D + A
Sbjct: 213 DVETLGLRLIERLMEIAPDLLMERYKLESIGPQGIDTMEAIGRKRGFILGNRELDYTRIA 272
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR+GK G I LE P
Sbjct: 273 TTVLNEFREGKIGKIVLEMP 292
>gi|226313197|ref|YP_002773091.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
gi|226096145|dbj|BAH44587.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
Length = 297
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 146/259 (56%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R+++LN+ D+ + W YF KQG + +
Sbjct: 24 IDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKADLADERATDEWIAYFRKQGIRTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G KL + K LA+D+ KR +G+ RA+R I+G PNVGKSSLINRL KR
Sbjct: 84 PIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGRAIRIMILGIPNVGKSSLINRLSKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RP VT+ +WV+ G LE LD+PGI+ + DQ ++LA I + D
Sbjct: 144 SVAATGDRPAVTKAQQWVKMGDTLELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFT 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRY----KIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+VA ++ M+ P I + + +++M GK + + N D +AA
Sbjct: 204 EVALFVISYMMHYYPERLIERFKLKELPEDRVEMLEEIGKK--RGCLVSGGNIDYDKAAE 261
Query: 236 RILTDFRKGKFGWISLERP 254
L + R GK G +S+ERP
Sbjct: 262 IFLRELRSGKLGTVSVERP 280
>gi|421872826|ref|ZP_16304443.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus
laterosporus GI-9]
gi|372458241|emb|CCF13992.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus
laterosporus GI-9]
Length = 273
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 3 VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFS 62
+VIE+ DAR+PLS+ +P++D+ + + R+++LN+ D+ + W YF +QG + +
Sbjct: 1 MVIELLDARLPLSSRNPMIDEIVAEKPRLILLNKADLADPSVTEMWVRYFKEQGLRTLPI 60
Query: 63 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 122
+ G G KL L + LASD+ KR +G+L RAVR I+G PNVGKSSLINRL KR +
Sbjct: 61 DALSGRGVNKLPELCQELASDMLQKRADRGMLARAVRIMILGIPNVGKSSLINRLAKRSV 120
Query: 123 CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADV 182
RP VT+ +WV+ G LE LD+PGI+ + DQ ++LA I + D ++V
Sbjct: 121 AQTGDRPAVTKSQQWVKMGDTLELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFSEV 180
Query: 183 AAILVQ-MLARIPTVGITALQNRYKI-DM--DGTCGKTFVQKLALHLFNG---DTHQAAF 235
A V+ M+ P L++R+K+ D+ DG + K + +G D +A+
Sbjct: 181 ALYAVRYMMHYYP----ERLKDRFKLTDLPEDGVELLEMIGKKRGCMASGGYIDYDKASE 236
Query: 236 RILTDFRKGKFGWISLERP 254
+L + R GK G ISLERP
Sbjct: 237 LLLRELRSGKIGQISLERP 255
>gi|373857305|ref|ZP_09600047.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
gi|372452955|gb|EHP26424.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
Length = 297
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 146/260 (56%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P++D+ + ++ R+++LN+ DM W YF G +
Sbjct: 24 VDIIFELVDARVPFSSRNPMIDEIIQHKPRLVLLNKADMADREVTKQWIRYFQDNGVAAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G+G ++ AK L S+ K +S+G+ PRA+RA IVG PN GKS+LINRL K+
Sbjct: 84 AINSQEGIGMKEIVIEAKKLLSEKFDKMKSRGINPRAIRAMIVGIPNAGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ +KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFDDQEVGLKLAVTGAIKDTLLNMY 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM---DGTCGKTFVQKLALHLFNG---DTHQAA 234
++AA +Q L R+ L+ RYK++M D + K L G D + +
Sbjct: 204 EIAAYALQYLERVYP---ERLKERYKLEMIPEDTVEQFNVIGKFRGCLVGGGEVDYDKVS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
I+ + R K G +S ERP
Sbjct: 261 ELIIREIRMEKLGPLSFERP 280
>gi|399047108|ref|ZP_10739240.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|433546085|ref|ZP_20502423.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
gi|398054941|gb|EJL47039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|432182701|gb|ELK40264.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
Length = 297
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 144/259 (55%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R+++LN+ D+ W YF K+G + +
Sbjct: 24 IDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKADLADEKATEEWIAYFRKEGIRTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G KL L K LA+D+ KR +G+ RA+R I+G PNVGKSSLINRL KR
Sbjct: 84 PIDALSGKGVNKLPELCKELAADMLAKRSERGMQGRAIRIMILGIPNVGKSSLINRLSKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RP VT+ +WV+ G LE LD+PGI+ + DQ ++LA I + D
Sbjct: 144 SVAATGDRPAVTKAQQWVKMGDTLELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFT 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRY----KIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
+VA ++ M+ P I + + +I M GK + + N D +AA
Sbjct: 204 EVALFVISYMMHYYPERLIERFKLKELPDDRIAMLEEIGKK--RGCLISGGNIDYDKAAE 261
Query: 236 RILTDFRKGKFGWISLERP 254
L + R GK G IS+ERP
Sbjct: 262 IFLRELRSGKLGPISVERP 280
>gi|406670839|ref|ZP_11078084.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
gi|405582355|gb|EKB56361.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
Length = 282
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 146/256 (57%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP S+ +P++ + +G + +L+LN+ D+ A AW Y+ QG + +
Sbjct: 25 VDLVIELADARIPESSRNPIIQEIIGQKPSLLILNKADLADPATTRAWEDYYRSQGQQAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q T ++R+ + D KR++KG+ PRA+R I+G PNVGKS+LINR + +
Sbjct: 85 SLDAQHLRSTKAINRVIQDQMQDFFAKRKAKGIKPRAIRLMILGIPNVGKSTLINRFVGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ GK+ E LD+PGI+ + D LA+ I ++ +
Sbjct: 145 NQAQTGNKPGVTKAQRWLKIGKEFELLDTPGILWPKFEDPMTGHHLALTGAIKDQLLPMQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
++A +L++ L R G+ L+N Y++++ D + +Q D +QA ++
Sbjct: 205 ELALVLIEQL-RQHYPGL--LENHYQLEVPEDLSSSDYLIQFTQAMNLGEDFNQAGEGLI 261
Query: 239 TDFRKGKFGWISLERP 254
DFR GK G +SLE P
Sbjct: 262 QDFRSGKLGALSLEFP 277
>gi|422409470|ref|ZP_16486431.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
gi|313609087|gb|EFR84797.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
Length = 287
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
D+A ++ L P LQN K++ T + V+ LA L +N D
Sbjct: 204 DIAGYGLRFLENHYP----DRLQNWLKVE---TVSENPVETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|299536767|ref|ZP_07050075.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|424737025|ref|ZP_18165481.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
gi|298727779|gb|EFI68346.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|422948857|gb|EKU43233.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
Length = 291
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 11/227 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+PLS+ +P++D+ + + R+L+LN+ DM + W YFAK+G K +
Sbjct: 24 VDIIFELIDARLPLSSRNPMIDEVINQKPRLLILNKADMADEQETRKWVEYFAKRGHKAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++++ A+ + + + +++G+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSLEGKGLQQVTKAAQEILKEKFDRMKARGMKPRAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDQEVGFKLALTGAIKDTITNME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFN 227
D+A G+ L N Y MD G F+ + + F+
Sbjct: 204 DLA-----------VYGLRFLSNHYPKRMDERYGLEFIHEELVDTFD 239
>gi|289423553|ref|ZP_06425354.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius 653-L]
gi|429728184|ref|ZP_19262924.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius VPI 4330]
gi|289156055|gb|EFD04719.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius 653-L]
gi|429150375|gb|EKX93289.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius VPI 4330]
Length = 295
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DARIPLS+ +P +D+ +G++ RI++LN+ DM D + W +YF+ +G K I
Sbjct: 36 VDIVVELLDARIPLSSKNPDIDRLVGDKPRIILLNKADMCKKEDLDKWISYFSSEGVKAI 95
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G KL + + +D+ K KG R +R IVG PNVGKSSLIN+L R
Sbjct: 96 TINAMTGKGVDKLVSECREVTADMMEKLAEKGRNQRPIRLMIVGVPNVGKSSLINKLSGR 155
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +WV+ ++E LD+PGI+ + DQ A+ LA I + ++
Sbjct: 156 KSTQTGDRPGVTKGKQWVKVRGNMELLDTPGILWPKFDDQRVALNLAFTRAIKD---EIL 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTHQ 232
D+ + ++++ R+ + L RYK +D C A+ G D +
Sbjct: 213 DIETLGLRLIERLMEIAPNDLIKRYK--LDSICDLPIDTMEAIGRKRGFIISKNELDYTR 270
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A +L +FR+GK G I LE P
Sbjct: 271 IATTVLNEFREGKIGRICLESP 292
>gi|348027363|ref|YP_004767168.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
gi|341823417|emb|CCC74341.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
Length = 287
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 151/261 (57%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+T+P++ +G++ I+VLN+ D+ A + W ++ +QG KV+
Sbjct: 24 IDVVIELVDARIPMSSTNPMIKSLIGDKPSIVVLNKADLADPAVLDEWVAHYKQQGRKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +L L ++LA+ + +++GL RAVR I+G PNVGKS+LIN+L +R
Sbjct: 84 ALNSKGGKGVKQLISLVRSLAAPKLARWKARGLKNRAVRTMILGIPNVGKSTLINKLSRR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PG T+ +WV G L+ LD+PG++ ++ +Q +A +LA G S V
Sbjct: 144 SAAKTADKPGETKGKQWVHIGDQLDLLDTPGVLWPKLENQVSAYRLAAT---GAISDTVF 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTHQ 232
D+ +L+Q++ ++ L+ RYK +D C K A+ G D +
Sbjct: 201 DMETVLLQLVEQLSAQYPDELKGRYK--LDSLCEKPLDTIEAIGRKRGCIVSGGVVDLEK 258
Query: 233 AAFRILTDFRKGKFGWISLER 253
IL +FR+GK G ISL+R
Sbjct: 259 TYKLILKEFREGKIGAISLDR 279
>gi|388504316|gb|AFK40224.1| unknown [Lotus japonicus]
Length = 223
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 81/91 (89%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
MDVVIEVRD RIP+STTHP MD WLGNRKRILVLNREDMIS DRNAWA YF + GTKV+
Sbjct: 119 MDVVIEVRDGRIPMSTTHPQMDLWLGNRKRILVLNREDMISTEDRNAWAEYFTRNGTKVV 178
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSK 91
FSNGQLGMGTMKL RLAK LA++VNVKRR+K
Sbjct: 179 FSNGQLGMGTMKLGRLAKELAANVNVKRRAK 209
>gi|217964585|ref|YP_002350263.1| ribosomal biogenesis GTPase [Listeria monocytogenes HCC23]
gi|290894531|ref|ZP_06557481.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|386008041|ref|YP_005926319.1| GTPase family protein [Listeria monocytogenes L99]
gi|386026640|ref|YP_005947416.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404407706|ref|YP_006690421.1| GTPase family protein [Listeria monocytogenes SLCC2376]
gi|217333855|gb|ACK39649.1| GTPase family protein [Listeria monocytogenes HCC23]
gi|290555912|gb|EFD89476.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|307570851|emb|CAR84030.1| GTPase family protein [Listeria monocytogenes L99]
gi|336023221|gb|AEH92358.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404241855|emb|CBY63255.1| GTPase family protein [Listeria monocytogenes SLCC2376]
Length = 287
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
D+A ++ L P LQN K++ T + V+ LA L +N D
Sbjct: 204 DIAGYGLRFLENHYP----DRLQNWLKVE---TVSEDPVETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|352517745|ref|YP_004887062.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
gi|348601852|dbj|BAK94898.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
Length = 282
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 8/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ D R+P+S+ +P++D+ L + R++++N+ D+ A W TYF +QG +
Sbjct: 24 VDIVFELVDGRLPISSRNPMLDEILQQKPRLVLINKADLADPAQTKKWETYFNEQGYAAL 83
Query: 61 FSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
N Q G+ L + +ALA + + + KGL PRA+RA ++G PNVGKS+L+NRL
Sbjct: 84 AINSQDNKGSKSILPKTKEALAEKLQ-REQEKGLKPRAIRAMVIGIPNVGKSTLLNRLAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
++M +PGVT+ +W+R+ KDLE LD+PGI+ + DQ KLA+ I ++ +
Sbjct: 143 KKMAQTGNKPGVTKGQQWIRYKKDLELLDTPGILWPKFEDQEIGKKLALTGAIKDQLFHQ 202
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
D+A ++ + L +RY++ D+ + + + F D + + R
Sbjct: 203 DDIAIYALEFFKQFYP---EQLADRYQLTQEDLAFSTAELLMLITKKQGFQDDYDKGSQR 259
Query: 237 ILTDFRKGKFGWISLER 253
I+ D R+GK G +L+R
Sbjct: 260 IIHDVREGKLGKYTLDR 276
>gi|393201741|ref|YP_006463583.1| GTPase [Solibacillus silvestris StLB046]
gi|406664618|ref|ZP_11072393.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
gi|327441072|dbj|BAK17437.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387466|gb|EKB46890.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
Length = 317
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 148/258 (57%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++D+ + + R+L+LN++DM + W YFA +G K +
Sbjct: 24 VDIVFELVDARLPLSSRNPMIDEVIHQKPRLLILNKQDMADEQETRRWIQYFADRGFKAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ A+ + +D + +SKG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSLEGKGLQAVTKAAQEILADKWERMKSKGMKPRAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + DQ KLA+ I + ++
Sbjct: 144 NLAKTGNMPGVTKAQQWIKVGKEIELLDTPGILWPKFEDQEVGYKLALTGAIKDTIMNME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
D+A ++ L T T ++ RYKI + +TF + KL G D Q +
Sbjct: 204 DLAVYGLRFL---ETHYPTRMEERYKISSVSEELVETFDAIGKLRRVFGQGGEIDYDQVS 260
Query: 235 FRILTDFRKGKFGWISLE 252
I+ D R+ G ++ +
Sbjct: 261 VLIVRDIREQNLGKLTFD 278
>gi|229086391|ref|ZP_04218567.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
gi|228696907|gb|EEL49716.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
Length = 287
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFEEKGHKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMIAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
DVA ++ + + P LQ RYK+++ F + + L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLQERYKLEVIPEDIVEFFDAIGRNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|311030148|ref|ZP_07708238.1| ribosomal biogenesis GTPase [Bacillus sp. m3-13]
Length = 285
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 150/267 (56%), Gaps = 17/267 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TK 58
+D+V E+ DARIP+S+ +P++D+ + N+ RI++LN+ DM W YF G TK
Sbjct: 24 IDIVYELVDARIPVSSRNPMIDEIISNKPRIILLNKADMADAKVTREWLDYFNLPGSSTK 83
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
I + Q G G +++ L+K L + K +S+G+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIAIDSQTGKGIQQIATLSKELLKEKFDKMQSRGIRPRAIRALIVGIPNVGKSTLINRLA 143
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
K+ + RPGVT+ +WV+ GK+LE LD+PGI+ + DQ +LA I + +
Sbjct: 144 KKNIAQTGDRPGVTKAQQWVKVGKELELLDTPGILWPKFEDQEVGYRLATTGAIKDTIIN 203
Query: 179 VADVAAILVQML-ARIPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNGD 229
+ D+A ++ L A P L+ RY +++ G K++ L + D
Sbjct: 204 LQDIAVFALRFLTAAYP----DRLKERYGLEEIPEDIVELFDAIGSKRGCKMSGGLIDYD 259
Query: 230 THQAAFRILTDFRKGKFGWISLERPPR 256
+ A ++ + R K G +SLERP +
Sbjct: 260 --KTAELVIREIRSEKLGKLSLERPEK 284
>gi|253573502|ref|ZP_04850845.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251847030|gb|EES75035.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 287
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 148/266 (55%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ L + R++VLN+ D+ A W YF ++G +
Sbjct: 24 IDVVIELLDARLPLSSRNPMIDEILQGKPRLIVLNKSDLADPAVTRQWIAYFKEEGHLAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ G G ++ RLAK L + K+ +KG+ PRAVRA IVG PNVGKS+LIN L R
Sbjct: 84 EADAASGQGLKEIPRLAKELLKERIEKQIAKGIKPRAVRALIVGIPNVGKSTLINGLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 KIAATGDRPGVTKGQQWIKVGTEMELLDTPGILWPKFEDQNVGYRLAVTGAIREEILNVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---------LFNG--- 228
D+A V+ L R + R+++D + +A+ L +G
Sbjct: 204 DIAFFAVKYLVR---YYWEPFKERFELDQPPRDFDDPDEIVAIMEAVGRKRGCLISGGRV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ +L + R GK G SLE P
Sbjct: 261 DLEKASGILLRELRAGKLGRYSLESP 286
>gi|422415767|ref|ZP_16492724.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
gi|313623978|gb|EFR94077.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
Length = 287
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 151/264 (57%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L + P LQN K++ T + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLEKHYP----DRLQNWLKVE---TVSEDPIETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|429736137|ref|ZP_19270054.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156043|gb|EKX98684.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 300
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIPLS+ +P++ + +G + R++VLN+ D+ A W YFA QG +
Sbjct: 34 VDVVLELLDARIPLSSANPVLREIVGEKPRLIVLNKADLADEAATRTWVKYFAAQGITAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGHGVKELVQAIAKCAKPKTDKLVQYGAKARAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + DQ AA+ LA I + YDVA
Sbjct: 154 TKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDQQAALHLAFTGAINDNVYDVA 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L + A RY+++ D G ++K+ L G D +A
Sbjct: 214 SVVLLLLNTLREAYPADLAA---RYRMEGDLPSGTELLEKIGRRRGCLRAGGKIDYEKAE 270
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 271 QIVLTDFRSGRLGRVTLDSLP 291
>gi|152976204|ref|YP_001375721.1| ribosomal biogenesis GTPase [Bacillus cytotoxicus NVH 391-98]
gi|152024956|gb|ABS22726.1| GTP-binding protein HSR1-related [Bacillus cytotoxicus NVH 391-98]
Length = 287
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 149/261 (57%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W TYF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWITYFEEKGHKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKELVKEKFDKMIAKGIKPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RYK+ D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYKLEDIPEDIVELFDAIGKNRGCLMGGGLIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R GK G ++ E P
Sbjct: 260 SELILRELRGGKLGRMTFESP 280
>gi|386053525|ref|YP_005971083.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
gi|346646176|gb|AEO38801.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
Length = 287
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 149/268 (55%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D N W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTNEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDD----- 198
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD-----GTCGKTFVQKLA--------LHLFN 227
L+QM I G+ L+N Y + T + ++ LA L +N
Sbjct: 199 -----LLQM-EEIAGYGLRFLENHYPDRLQTWLKVETVSEDPIETLAFIAEKRGLLDRYN 252
Query: 228 G-DTHQAAFRILTDFRKGKFGWISLERP 254
D +AA ++ + R+ K G +S + P
Sbjct: 253 DPDYSRAAETVVREIRQQKLGRMSFDFP 280
>gi|320529142|ref|ZP_08030234.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
gi|320138772|gb|EFW30662.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
Length = 310
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + + + R++VLN+ D+ A AW YFA Q +
Sbjct: 40 VDVVVELLDARIPMSSANPVLREIVAGKPRLVVLNKSDLAEPAATRAWVQYFASQDIVAV 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT +L + + LA+ K G PRA R I+G PNVGKSSLINRL
Sbjct: 100 PVDAVKGAGTKELVQAIQKLAAPRTEKLAKHGAKPRAARCMILGIPNVGKSSLINRLSGD 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D AA++LA I + YDV
Sbjct: 160 ARTKVENRPGVTRAKQWIRIGAQLELLDMPGILWPKFEDARAALRLAFTGAISDTVYDVG 219
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
V L+++L A P AL+ RY + + G ++++ L G D +A
Sbjct: 220 GVVLQLLRVLHADYP----AALRERYDLAANLPTGVELLEEIGRRRGCLVRGGRIDYEKA 275
Query: 234 AFRILTDFRKGKFGWISLERP 254
+LTDFR G+ G ++L+ P
Sbjct: 276 EQIVLTDFRSGRLGRVTLDSP 296
>gi|46907499|ref|YP_013888.1| ribosomal biogenesis GTPase [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093920|ref|ZP_00231659.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|226223875|ref|YP_002757982.1| hypothetical protein Lm4b_01282 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824667|ref|ZP_05229668.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|254852674|ref|ZP_05242022.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|254932411|ref|ZP_05265770.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|255520254|ref|ZP_05387491.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-175]
gi|300765308|ref|ZP_07075292.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|386732012|ref|YP_006205508.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404280827|ref|YP_006681725.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404286688|ref|YP_006693274.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749616|ref|YP_006673082.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|405752491|ref|YP_006675956.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|405755402|ref|YP_006678866.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|406704045|ref|YP_006754399.1| GTPase family protein [Listeria monocytogenes L312]
gi|417313732|ref|ZP_12100439.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|417317426|ref|ZP_12104044.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|424714147|ref|YP_007014862.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823037|ref|ZP_18248050.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|46880767|gb|AAT04065.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017706|gb|EAL08500.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|225876337|emb|CAS05046.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605992|gb|EEW18600.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|293583968|gb|EFF96000.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|293593906|gb|EFG01667.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|300513991|gb|EFK41054.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|328468562|gb|EGF39562.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|328475116|gb|EGF45900.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|332311717|gb|EGJ24812.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|384390770|gb|AFH79840.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404218816|emb|CBY70180.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|404221691|emb|CBY73054.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|404224602|emb|CBY75964.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|404227462|emb|CBY48867.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404245617|emb|CBY03842.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361075|emb|CBY67348.1| GTPase family protein [Listeria monocytogenes L312]
gi|424013331|emb|CCO63871.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 287
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 151/264 (57%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L + P LQN K++ T + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLEKHYP----DRLQNWLKVE---TVSEDPIETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|401565318|ref|ZP_10806158.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
gi|400187907|gb|EJO22097.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
Length = 300
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIPLS+ +P++ + +G + R++VLN+ D+ A W YFA QG +
Sbjct: 34 VDVVLELLDARIPLSSANPVLREIVGEKPRLIVLNKADLADEAATRTWVKYFATQGLAAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGRGVKELVQAIAKCAKPKTDKLVQHGAKARAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + DQ AA+ LA I + YDVA
Sbjct: 154 TKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDQQAALHLAFTGAINDNVYDVA 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L + A RY+++ D G ++++ L G D +A
Sbjct: 214 SVVLLLLNTLREAYPADLAA---RYRMEEDLPSGTELLEEIGRRRGCLRAGGKIDYEKAE 270
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 271 QIVLTDFRSGRLGRVTLDSLP 291
>gi|373115378|ref|ZP_09529552.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670444|gb|EHO35525.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 294
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 146/266 (54%), Gaps = 20/266 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +D+ +G + R++VLNR D A W +F +QG V+
Sbjct: 24 VDLVAEIIDARIPISSRNPDIDELVGEKPRLIVLNRADQADPAMNRVWTDWFRRQGWAVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N + G G + S + + + + ++KGL+ R VRA +VG PNVGKS+ IN++ KR
Sbjct: 84 ETNARDGKGVGQFSTVIRQALKEKLEQWKAKGLVGRPVRAMVVGVPNVGKSTFINQVAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A RPGVTR +WV LE LD+PGI+ + D+ I LA + + D+
Sbjct: 144 KSAKAGNRPGVTRGKQWVSVDAGLELLDTPGILWPKFEDETTGIHLAFTGAVKDEIMDLE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMD---------GTCGKTFVQKLALHLFNG-- 228
+A L+++LA R P AL RYK++ D CGK K + G
Sbjct: 204 TLACHLIELLARRYP----QALAERYKLEADPGLPGWELLELCGK----KRGFRISGGEV 255
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
DT + A +L ++R GK G ++ E P
Sbjct: 256 DTERMAKVLLDEYRSGKLGNLTFETP 281
>gi|365841786|ref|ZP_09382840.1| ribosome biogenesis GTP-binding protein YlqF [Flavonifractor
plautii ATCC 29863]
gi|364576938|gb|EHM54233.1| ribosome biogenesis GTP-binding protein YlqF [Flavonifractor
plautii ATCC 29863]
Length = 285
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 146/266 (54%), Gaps = 20/266 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +D+ +G + R++VLNR D A W +F +QG V+
Sbjct: 15 VDLVAEIIDARIPISSRNPDIDELVGEKPRLIVLNRADQADPAMNRVWTDWFRRQGWAVL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N + G G + S + + + + ++KGL+ R VRA +VG PNVGKS+ IN++ KR
Sbjct: 75 ETNARDGKGVGQFSTVIRQALKEKLEQWKAKGLVGRPVRAMVVGVPNVGKSTFINQVAKR 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A RPGVTR +WV LE LD+PGI+ + D+ I LA + + D+
Sbjct: 135 KSAKAGNRPGVTRGKQWVSVDAGLELLDTPGILWPKFEDETTGIHLAFTGAVKDEIMDLE 194
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMD---------GTCGKTFVQKLALHLFNG-- 228
+A L+++LA R P AL RYK++ D CGK K + G
Sbjct: 195 TLACHLIELLARRYP----QALAERYKLEADPGLPGWELLELCGK----KRGFRISGGEV 246
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
DT + A +L ++R GK G ++ E P
Sbjct: 247 DTERMAKVLLDEYRSGKLGNLTFETP 272
>gi|255022620|ref|ZP_05294606.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-208]
Length = 287
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L P LQN K++ T + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLENHYP----DRLQNWLKVE---TVSEDPIETLAFIAEKXGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|315282092|ref|ZP_07870580.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
gi|313614262|gb|EFR87918.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
Length = 288
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDILQME 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L P LQN K++ T + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLENHYP----DRLQNWLKVE---TVSEDPIETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|422809350|ref|ZP_16857761.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
gi|378752964|gb|EHY63549.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
Length = 287
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L P LQN K++ T + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLENHYP----DRLQNWLKVE---TVSEDPIETLAFIAEKRGLLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|153854844|ref|ZP_01996067.1| hypothetical protein DORLON_02072 [Dorea longicatena DSM 13814]
gi|149752546|gb|EDM62477.1| ribosome biogenesis GTP-binding protein YlqF [Dorea longicatena DSM
13814]
Length = 282
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 150/261 (57%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ +AW+ YF ++G V+
Sbjct: 24 IDLVIELVDARVPISSRNPDIDELGKNKARLILLNKSDLAEDKWNDAWSEYFREKGFSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGIKSINGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ R DQA +KLA I +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPRFEDQAVGLKLAFIGSIKDEILQTE 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++AA LV+ M P V L+N+Y ++ D T ++K+A L G DT +A
Sbjct: 204 ELAAELVKFMNENYPGV----LENKYNVEED-TDPYGMLEKIAESRHCLVRGNELDTEKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ ++ DFR G+ G ++LE P
Sbjct: 259 SVLLMDDFRNGRLGKLTLEYP 279
>gi|375090694|ref|ZP_09737007.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
gi|374565115|gb|EHR36391.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
Length = 285
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP S+ +P++ + + + ILVLN++D+ AW +Y+ QG +
Sbjct: 25 VDLVIELVDARIPESSRNPMIAEIISQKPSILVLNKQDLADKQMTQAWLSYYQDQGQVAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G L + + L +D K++++G+ PRA+R I+G PNVGKS+LINR + +
Sbjct: 85 AIDAQHQKGLKPLQKACQDLMADYFAKQKARGVKPRAIRLMILGIPNVGKSTLINRFVGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ GK+ E LD+PGI+ + D I LA+ I ++ ++
Sbjct: 145 NQAQTGNKPGVTKAQRWLKLGKEFELLDTPGILWPKFEDPQTGIHLALTGAIKDQLIEMQ 204
Query: 181 DVAAILVQMLARI-PTV--GITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
++A + L + P V + L + ++D T Q+L L N D +AA R+
Sbjct: 205 ELALAFIPHLQQFYPHVLEEVYGLTSSNEMD-PATVLTDLTQRLGL---NQDYPKAAERL 260
Query: 238 LTDFRKGKFGWISLERP 254
+ DFR+ K G I+L+RP
Sbjct: 261 IFDFRQKKLGAITLDRP 277
>gi|116872705|ref|YP_849486.1| ribosomal biogenesis GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741583|emb|CAK20707.1| GTPase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 287
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 145/257 (56%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA +G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFADKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLALHLFNG-DTHQAAFRI 237
D+A ++ L + + K+ D F+ ++ L +N D +AA +
Sbjct: 204 DIAGYGLRFLEKNYPDRLENWLKVEKVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETV 263
Query: 238 LTDFRKGKFGWISLERP 254
+ + R+ K G +S + P
Sbjct: 264 VREIRQQKLGRMSFDFP 280
>gi|228992566|ref|ZP_04152493.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
gi|228998614|ref|ZP_04158201.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|229006114|ref|ZP_04163802.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228755190|gb|EEM04547.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228761082|gb|EEM10041.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|228767200|gb|EEM15836.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
Length = 290
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFEEKGHKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
DVA ++ + + P +Q RYKI F + + L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERIQERYKISEIPEDIVEFFDVIGRNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R GK G ++ E P
Sbjct: 260 SELILRELRGGKLGKMTFETP 280
>gi|229061441|ref|ZP_04198786.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|423558599|ref|ZP_17534901.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
gi|228717864|gb|EEL69512.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|401191867|gb|EJQ98889.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
Length = 296
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 149/261 (57%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RYK+ D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYKLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|326389497|ref|ZP_08211064.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
gi|325994502|gb|EGD52927.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
Length = 277
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 145/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + N+KRI++LN+ D+ + W YF ++G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADLADDVITDLWIEYFKEKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + + D+ K++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPR-LRGMIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRALHWIKTPY-FDLLDTPGILWPKFDDKKVGIMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVDEDFELLKEIGRKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGKISLERP 277
>gi|16800379|ref|NP_470647.1| ribosomal biogenesis GTPase [Listeria innocua Clip11262]
gi|422412731|ref|ZP_16489690.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
gi|16413784|emb|CAC96542.1| lin1311 [Listeria innocua Clip11262]
gi|313619217|gb|EFR90980.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
Length = 287
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLALHLFNG-DTHQAAFRI 237
++A ++ L + + K+ D F+ ++ L +N D +AA +
Sbjct: 204 EIAGYGLRFLEKHYPDRLQNWLKVEKVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETV 263
Query: 238 LTDFRKGKFGWISLERP 254
+ + R+ K G +S + P
Sbjct: 264 VREIRQQKLGRMSFDFP 280
>gi|167037683|ref|YP_001665261.1| HSR1-like GTP-binding protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116098|ref|YP_004186257.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856517|gb|ABY94925.1| GTP-binding protein, HSR1-related [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929189|gb|ADV79874.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 277
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + N+KRI++LN+ D+ + W YF +G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADLADDVITDLWIEYFKGKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + D+ K++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPR-LRGMIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRALHWIKTPY-FDLLDTPGILWPKFDDKKVGIMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K L G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVNEDFELLKEIGKKRGCLLARGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGRISLERP 277
>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus
champanellensis 18P13]
Length = 290
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 144/261 (55%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DARIP+S+ +P MD+ G + R+L+LN+ DM W + G +
Sbjct: 28 VDAVVEILDARIPVSSRNPEMDRLTGGKPRLLILNKSDMADERTTQQWLHRLRRSGCAAV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + L + + R+KGL+ R + +VG PNVGKSS IN++
Sbjct: 88 AMDCKSGKGVKQFHPALRELLKEQIAQWRAKGLVNRPIHVMVVGIPNVGKSSFINKMAGG 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +WV+ G +E LD+PG++ + DQ AA +LA I + DV
Sbjct: 148 KRAKVEDRPGVTRTKQWVKLGDGVEMLDTPGVLWPKFDDQQAAQRLAFTGAIND---DVL 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM-DGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ A+ + +L + AL RYKI++ +GT G+ +++L L +G +T +A
Sbjct: 205 DIEALAMLLLEYLHEAYPQALTARYKINLPEGTEGRILLEELGRKRGMLVSGGEVNTERA 264
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L +FR GK G I+LE P
Sbjct: 265 AITLLDEFRSGKLGRITLEVP 285
>gi|383754889|ref|YP_005433792.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366941|dbj|BAL83769.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 297
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 142/263 (53%), Gaps = 12/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P++ + + ++ R++ LN+ D+ A W YF QG +
Sbjct: 30 VDVVIELLDARIPLSSANPMLAEIIKDKPRMIALNKSDLADSASTKKWLDYFKAQGVPAV 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L ++A+ LA K SKG PRA R I+G PNVGKSSLINRL
Sbjct: 90 TIDSMKGKGMKQLVKVAEDLARPKTEKFVSKGAKPRAARCMILGIPNVGKSSLINRLAGA 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
AA +PGVTR +W++ G +L+ LD+PGI+ + DQ +KLA I + YD
Sbjct: 150 VKAKAADKPGVTRAKQWIKIGTNLDLLDTPGILWPKFEDQTVGLKLAFTGAINDDIYDRE 209
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMD----GTCGKTFVQKLALHLFNG---DTHQ 232
V A+L+ ++ R P L R+K+ D G + + L G D +
Sbjct: 210 QVTALLLGIMRRDYP----ERLAERFKLKDDVPDNGLEILELIGRKRGCLVKGGVVDLEK 265
Query: 233 AAFRILTDFRKGKFGWISLERPP 255
A +L +FR GK G ++L+ P
Sbjct: 266 AQNIVLNEFRAGKLGLVTLDEIP 288
>gi|345017764|ref|YP_004820117.1| hypothetical protein Thewi_1411 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033107|gb|AEM78833.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1411
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 277
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 145/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + N+KRI++LN+ D+ + W YF ++G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADLADDVITDLWIEYFKEKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + + D+ K++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPR-LRGMIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ + LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRALHWIKTPY-FDLLDTPGILWPKFDDKKVGVMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVDEDFELLKEIGRKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGKISLERP 277
>gi|423522332|ref|ZP_17498805.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
gi|401175026|gb|EJQ82229.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
Length = 296
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 148/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|210615858|ref|ZP_03290820.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
gi|210150061|gb|EEA81070.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
Length = 283
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 4/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ +AWA YF K+G V+
Sbjct: 24 IDLVIELVDARVPISSRNPDIDELGKNKARLILLNKSDLAEDKQNDAWAEYFKKKGFAVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGIKSIQGVIQEACKEKMERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
++AA L+Q + + G+ A + D T + K L G DT++AA +
Sbjct: 204 ELAAELIQFMKK-HYAGVLAEKYAITEVEDPYACLTDIAKNRHCLLRGSELDTNKAAMLL 262
Query: 238 LTDFRKGKFGWISLERP 254
+ DFR G+ G I+LE P
Sbjct: 263 IDDFRNGRLGKITLEFP 279
>gi|205373354|ref|ZP_03226158.1| hypothetical protein Bcoam_08560 [Bacillus coahuilensis m4-4]
Length = 285
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 127/209 (60%), Gaps = 5/209 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP+S+ +P+MDQ + + R+++LN+EDM AW YF ++G K I
Sbjct: 24 VDIIFELVDARIPISSRNPMMDQIVQQKPRLVLLNKEDMADPELTKAWIAYFQERGIKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + AK + + ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SLNAQEGNGLHAIVKAAKEILKPKWDRMKAKGMNPRAIRAMIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDQEVGYKLAVTGAIKDTIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID 208
D++ ++ L + P V L+ RY +D
Sbjct: 204 DISVYALRYLEKNYPKV----LKERYGLD 228
>gi|299822634|ref|ZP_07054520.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
gi|299816163|gb|EFI83401.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
Length = 289
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 146/264 (55%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DAR+PLS+ +P++ + + +KR+++LN+ D+ W YFA+QG +
Sbjct: 24 VDVIFELVDARLPLSSANPMLAEIIHQKKRVIILNKADLADEVRTAEWIDYFAEQGLLAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G K+SR A+ L + ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVDAQAGKGMHKISRAAELLMKEKFDNWKTKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ K LE LD+PGI+ + DQ+ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVEKSLELLDTPGILWPKFEDQSVGFKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLAL-----HLF----NGDT 230
D+A+ + + P + L+N T +T ++ L + LF + D
Sbjct: 204 DIASFAAEFFRKNYPERLLHYLEN-------DTIPETSLEFLGMIAEKKRLFDRYQDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA + D R K G I+L+ P
Sbjct: 257 DRAAETFIRDIRTQKLGRITLDDP 280
>gi|315302907|ref|ZP_07873643.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
gi|313628721|gb|EFR97118.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
Length = 287
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLALHLFNG-DTHQAAFRI 237
++A ++ L + + K+ D F+ ++ L +N D +AA +
Sbjct: 204 EIAGYGLRFLEQHYPDRLENWLKVEKVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETV 263
Query: 238 LTDFRKGKFGWISLERP 254
+ + R+ K G +S + P
Sbjct: 264 VREIRQQKLGRMSFDFP 280
>gi|423483428|ref|ZP_17460118.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
gi|401140979|gb|EJQ48534.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
Length = 296
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ M P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEEHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|16803312|ref|NP_464797.1| ribosomal biogenesis GTPase [Listeria monocytogenes EGD-e]
gi|47097415|ref|ZP_00234964.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254828635|ref|ZP_05233322.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|254911947|ref|ZP_05261959.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|254936273|ref|ZP_05267970.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|255025708|ref|ZP_05297694.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-003]
gi|284801657|ref|YP_003413522.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284994799|ref|YP_003416567.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|386043583|ref|YP_005962388.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|386046923|ref|YP_005965255.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|386050248|ref|YP_005968239.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404283763|ref|YP_006684660.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404410569|ref|YP_006696157.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404413348|ref|YP_006698935.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|405758319|ref|YP_006687595.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|16410688|emb|CAC99350.1| lmo1272 [Listeria monocytogenes EGD-e]
gi|47014214|gb|EAL05198.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258601034|gb|EEW14359.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|258608862|gb|EEW21470.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|284057219|gb|ADB68160.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284060266|gb|ADB71205.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|293589908|gb|EFF98242.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|345533914|gb|AEO03355.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|345536817|gb|AEO06257.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|346424094|gb|AEO25619.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404230395|emb|CBY51799.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404233265|emb|CBY54668.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404236201|emb|CBY57603.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|404239047|emb|CBY60448.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|441470942|emb|CCQ20697.1| Ribosome biogenesis GTPase A [Listeria monocytogenes]
gi|441474069|emb|CCQ23823.1| Ribosome biogenesis GTPase A [Listeria monocytogenes N53-1]
Length = 287
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 148/268 (55%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDD----- 198
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD-----GTCGKTFVQKLA--------LHLFN 227
L+QM I G+ L+N Y + T + ++ LA L +N
Sbjct: 199 -----LLQM-EEIAGYGLRFLENHYPDRLQTWLKVETVSEDPIETLAFIAEKRGLLDRYN 252
Query: 228 G-DTHQAAFRILTDFRKGKFGWISLERP 254
D +AA ++ + R+ K G +S + P
Sbjct: 253 DPDYSRAAETVVREIRQQKLGRMSFDFP 280
>gi|387927054|ref|ZP_10129733.1| GTPase YlqF [Bacillus methanolicus PB1]
gi|387589198|gb|EIJ81518.1| GTPase YlqF [Bacillus methanolicus PB1]
Length = 289
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP S+ +P++D+ + ++ R+L+LN+ DM + W YF + + +
Sbjct: 24 VDIIFELVDARIPYSSRNPMIDEVIQHKPRLLLLNKADMADQSKTKEWIEYFQENDIRAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ L+K + + + ++KGL PRA+RA IVG PN GKS+LINRL ++
Sbjct: 84 AINSQAGTGMKEIVALSKEILKEKFDRMKAKGLKPRAIRAMIVGIPNAGKSTLINRLARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W++ GK+LE LD+PGI+ + DQ +KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTRAQQWIKVGKELELLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ L R P L++RY++ + + F + K L G D +
Sbjct: 204 DVAVYALRFLEREYP----DRLKDRYQLGIIHDDIAELFNEIGKFRGCLMGGGEVDYDKV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++ + R K G ++ ERP
Sbjct: 260 AELVVREVRTEKLGPLTFERP 280
>gi|423100352|ref|ZP_17088059.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
gi|370793353|gb|EHN61191.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
Length = 288
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 149/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 25 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 85 AVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 145 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 204
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L + P LQN K++ + ++ LA L +N D
Sbjct: 205 EIAGYGLRFLEKHYP----DRLQNWLKVE---KVSENPIETLAFIAEKRGLLDRYNDPDY 257
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+ A ++ + R+ K G +S + P
Sbjct: 258 SRTAETVVREIRQQKLGRMSFDFP 281
>gi|167040344|ref|YP_001663329.1| HSR1-like GTP-binding protein [Thermoanaerobacter sp. X514]
gi|300914428|ref|ZP_07131744.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307724336|ref|YP_003904087.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
gi|166854584|gb|ABY92993.1| GTP-binding protein, HSR1-related [Thermoanaerobacter sp. X514]
gi|300889363|gb|EFK84509.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307581397|gb|ADN54796.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
Length = 277
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + N+KR+++LN+ D+ + W YF +G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADLADDVITDLWIEYFKGKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + D+ K++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPR-LRGMIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRALHWIKTPY-FDLLDTPGILWPKFDDKKVGIMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K L G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVNEDFELLKEIGKKRGCLLARGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGRISLERP 277
>gi|164688557|ref|ZP_02212585.1| hypothetical protein CLOBAR_02202 [Clostridium bartlettii DSM
16795]
gi|164602970|gb|EDQ96435.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
bartlettii DSM 16795]
Length = 299
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P +D+ N+ R++VLN+ D+ A N W +Y+ +G K I
Sbjct: 37 VDVVIELLDARIPLSSKNPEIDKLAHNKPRVVVLNKSDLSDRAKLNKWISYYQSKGIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G K+ K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PVDTLKGSGVNKIVEECKNVTKEKMDALKEKGRKERAIRVMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + ++
Sbjct: 157 KSTQTGDRPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQKIALNLAFTRAIKD---EIL 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQAA 234
D+ + ++ + ++ + L+ RYK+D G ++ + L D + A
Sbjct: 214 DIDTLGLKFIEKMSDIEPEKLKARYKLDSLGEEPLETMEMIGRKRGFILGRNELDYTRIA 273
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR+GK G I+LE P
Sbjct: 274 KTVLNEFREGKLGQITLEVP 293
>gi|289578448|ref|YP_003477075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
gi|289528161|gb|ADD02513.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
Length = 277
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 145/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIP S+ +P +D + N+KR+++LN+ D+ + W YF ++G + I
Sbjct: 23 VDVIYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADLADDVITDLWIEYFKEKGIEAI 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + + D+ K+R KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPR-LRGIIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + ++
Sbjct: 142 KRAKTGDKPGVTRTLHWIKTPY-FDILDTPGILWPKFDDKETGIMLAITGAIKDEILNIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAILKKYYP---HYLMSRYKIDKIVMEDFELLKEIGKKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGKISLERP 277
>gi|422418869|ref|ZP_16495824.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|422421929|ref|ZP_16498882.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
gi|313633473|gb|EFS00297.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|313638163|gb|EFS03419.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
Length = 287
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L + P L+N K++ + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLEKHYP----DRLENWLKVE---KVSENPIETLAFIAEKRGFLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|210622539|ref|ZP_03293232.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
gi|210154174|gb|EEA85180.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
Length = 297
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 137/260 (52%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ D+RIP S+ +P +D + + R+++LN+ D+ A N W Y+ +QG K I
Sbjct: 37 VDVVVELLDSRIPYSSKNPDIDTLMAGKPRVVLLNKSDISDRAKLNKWINYYKEQGIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ K D + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PIDAMKGTGVNRIVDECKNAVKDKMDSLKEKGRKERAIRIMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +WV+ +LE LD+PGI+ + DQ A+ LA I + DV
Sbjct: 157 RSTQTGDRPGVTKGKQWVKLRGNLELLDTPGILWPKFEDQDVALNLAFTRAIKDEILDVE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH--LFNG----DTHQAA 234
+A L++ L I + A RYK+D G G + +A G D + A
Sbjct: 217 TLALRLIEKLMVIEPEKLAA---RYKLDELGESGIETMDMIAQKRGFITGRKEIDYTRTA 273
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G I+LE P
Sbjct: 274 TTVLNEFRTGKLGNITLEVP 293
>gi|297544724|ref|YP_003677026.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842499|gb|ADH61015.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 277
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 145/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIP S+ +P +D + N+KR+++LN+ D+ + W YF ++G + I
Sbjct: 23 VDVIYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADLADDVITDLWIEYFKEKGIEAI 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + + D+ K+R KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPR-LRGIIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + ++
Sbjct: 142 KRAKTGDKPGVTRTLHWIKTPY-FDILDTPGILWPKFDDKETGIMLAITGAIKDEILNIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAVLKKYYP---HYLMSRYKIDKIVMEDFELLKEIGKKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGKISLERP 277
>gi|229013021|ref|ZP_04170186.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|423489014|ref|ZP_17465696.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|423494739|ref|ZP_17471383.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|423498469|ref|ZP_17475086.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|423511872|ref|ZP_17488403.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
gi|423598851|ref|ZP_17574851.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|423661322|ref|ZP_17636491.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|228748275|gb|EEL98135.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|401150832|gb|EJQ58284.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|401160518|gb|EJQ67896.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|401237121|gb|EJR43578.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|401301363|gb|EJS06952.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|402432262|gb|EJV64321.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|402450133|gb|EJV81967.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
Length = 296
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 148/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|229019033|ref|ZP_04175874.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|229025279|ref|ZP_04181699.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|423389855|ref|ZP_17367081.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
gi|423418255|ref|ZP_17395344.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|228736032|gb|EEL86607.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|228742273|gb|EEL92432.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|401106528|gb|EJQ14489.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|401641946|gb|EJS59663.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
Length = 296
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKILVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R GK G ++ E P
Sbjct: 260 SELILRELRGGKLGKMTFETP 280
>gi|289434556|ref|YP_003464428.1| HSR1-related GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170800|emb|CBH27342.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 287
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + ++R+++LN+ D W YFA++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G K+ + A+ L ++ + RSKG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + +
Sbjct: 144 NIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQME 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLA--------LHLFNG-DT 230
++A ++ L + P L+N K++ + ++ LA L +N D
Sbjct: 204 EIAGYGLRFLEKHYP----DRLENWLKVE---KVSENPIETLAFIAEKRGFLDRYNDPDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ + R+ K G +S + P
Sbjct: 257 SRAAETVVREIRQQKLGRMSFDFP 280
>gi|229134646|ref|ZP_04263455.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
gi|228648692|gb|EEL04718.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
Length = 296
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 148/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|423367882|ref|ZP_17345314.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|423452861|ref|ZP_17429714.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|423470052|ref|ZP_17446796.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
gi|401082743|gb|EJP91008.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|401139420|gb|EJQ46982.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|402437304|gb|EJV69328.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
Length = 296
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 148/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+FG ++ E P
Sbjct: 260 SELILRELRGGRFGKMTFETP 280
>gi|415886553|ref|ZP_11548333.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
gi|387587240|gb|EIJ79563.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
Length = 290
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 148/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP S+ +P++D+ + ++ R+L+LN+ DM + W YF G + +
Sbjct: 24 VDIIFELVDARIPYSSRNPMIDEIIQHKPRLLLLNKSDMADQSKTKEWIQYFNMNGIRAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ L++ + + + ++KG+ PRA+RA IVG PN GKS+LINRL ++
Sbjct: 84 AINSQAGTGMKEIVALSREILKEKFDRMKAKGVKPRAIRAMIVGIPNSGKSTLINRLARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + D+ +KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDEEVGLKLALTGAIKDTILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ L R P L+ RY+++ + F + KL L G D +
Sbjct: 204 DVAVYALRFLEREYP----DRLKERYQLEIISDKIVDLFNEIGKLRGCLMGGGEVDYDKV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++ + R KFG ++ ERP
Sbjct: 260 AELVVREVRTEKFGPLTFERP 280
>gi|346308009|ref|ZP_08850137.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
gi|345904364|gb|EGX74112.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
Length = 284
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ AW YF K+G V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARLIILNKSDLAEERWNEAWTEYFKKKGFHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA+ I +
Sbjct: 144 AAAKTGNKPGVTKGKQWIRLNKQVELLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTE 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI----DMDGTCGKTFVQKLALHLFNG-DTHQAA 234
++AA L++ L A P V L+N+Y I D G+ + L N DT +AA
Sbjct: 204 ELAAELIRFLAANYPGV----LENKYTITAAQDPYVMLGRIAESRHCLVRGNELDTEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ DFR+GK G ++LE P
Sbjct: 260 MLLMDDFREGKLGRLTLEYP 279
>gi|255655269|ref|ZP_05400678.1| putative GTPase [Clostridium difficile QCD-23m63]
gi|296451254|ref|ZP_06892994.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296880394|ref|ZP_06904357.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
gi|296259860|gb|EFH06715.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296428635|gb|EFH14519.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
Length = 298
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 37 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADKDKLNQWIEYYKKINIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G K+ K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 157 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 217 TLALKLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 270
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 271 RIATTVLNEFRDGKIGNITLEIP 293
>gi|126654071|ref|ZP_01725897.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
gi|126589451|gb|EAZ83598.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
Length = 281
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 11/227 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+PLS+ +P++D+ + + R+L+LN+ DM + W YFA++G K +
Sbjct: 15 VDIIFELIDARLPLSSRNPMIDEVINQKPRLLILNKADMADEQETRKWVDYFAQRGHKAV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++++ A+ + + + ++KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 75 AINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPRAIRAMIVGIPNVGKSTLINRLAKK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ KLA+ I + ++
Sbjct: 135 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDQEVGFKLALTGAIKDTITNME 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFN 227
D+A G+ L Y M+ G FV + + F+
Sbjct: 195 DLA-----------VYGLRFLSVHYPKRMEERYGFEFVHEDLVETFD 230
>gi|335038410|ref|ZP_08531661.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
gi|334181699|gb|EGL84213.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 138/262 (52%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P S+ +P+MD+ + ++ R+++LN++D+ + W +F K+ + +
Sbjct: 24 IDVVIELLDARLPFSSQNPMMDELVKDKPRLVLLNKKDLADPSVTEKWLRFFEKKAFQAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G + + LA D+ K KG+ PR +RA IVG PNVGKSSLINRL KR
Sbjct: 84 AVDAQSGNGIKAIPSACQTLARDIMKKMTDKGMKPRPIRALIVGIPNVGKSSLINRLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G LE LD+PGI+ + D +KLA I +
Sbjct: 144 HVAKTGDRPGVTKAQQWIKTGHGLELLDTPGILWPKFDDPLVGLKLAASGAIRDEILPKE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTHQ 232
+VA + L R V L+NRY + G G A+ G D +
Sbjct: 204 EVALFAIDFLRR---VYPERLKNRYT--LQGLTGTNVEIMEAIGQKRGCLKAGASVDYGR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+ IL D R GK G IS E P
Sbjct: 259 ISDIILNDLRSGKLGPISFETP 280
>gi|169827105|ref|YP_001697263.1| hypothetical protein Bsph_1533 [Lysinibacillus sphaericus C3-41]
gi|168991593|gb|ACA39133.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 290
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 11/227 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+PLS+ +P++D+ + + R+LVLN+ DM + W YFA++G K +
Sbjct: 24 VDIIFELIDARLPLSSRNPMIDEVINQKPRLLVLNKADMADEQETRKWVEYFAQRGHKAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++++ A+ + + + ++KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPRAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDQEVGFKLALTGAIKDTITNME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFN 227
D+A G+ L Y M+ G F+ + + F+
Sbjct: 204 DLA-----------VYGLRFLSVHYPKRMEERYGFGFIHEDLVETFD 239
>gi|313896226|ref|ZP_07829779.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975025|gb|EFR40487.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 303
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 140/261 (53%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P++ + + + R++VLN+ D+ AW YFA Q +
Sbjct: 33 VDVVIELLDARIPMSSANPVLREIVAGKTRLIVLNKSDLADPTATRAWVQYFASQDIVAV 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT +L + + LA+ K G PRA R I+G PNVGKSSLINRL
Sbjct: 93 PVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPRAARCMILGIPNVGKSSLINRLSGG 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D AA++LA I + YDV
Sbjct: 153 ARTKVENRPGVTRAKQWIRIGAQLELLDMPGILWPKFEDARAALRLAFTGAISDTVYDVG 212
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
V L+++L A P L+ RY + + G ++++ L G D +A
Sbjct: 213 GVVLQLLRVLHADYPAT----LRARYGLAENLPTGVELLEEIGRRRGCLVRGGRIDYEKA 268
Query: 234 AFRILTDFRKGKFGWISLERP 254
+LTDFR G+ G ++L+ P
Sbjct: 269 EQIVLTDFRSGRLGRVTLDSP 289
>gi|334128047|ref|ZP_08501948.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
gi|333388369|gb|EGK59548.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
Length = 296
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 139/262 (53%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P++ + +G + R++VLN+ D+ A AW FA QG +
Sbjct: 34 VDVVIELLDARIPMSSANPVLREIVGGKPRVIVLNKADLADEAATRAWVNCFATQGITAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGRGVKELVQAIAKCAKQKTDKLVQHGAKARAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D+ AA+ LA I + YDVA
Sbjct: 154 SKTKVENRPGVTRAKQWIRIGAQLELLDMPGILWPKFEDRQAALHLAFTGAINDNVYDVA 213
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
V +L+ L R P + L RY+++ + G ++++ L G D +A
Sbjct: 214 SVVLLLLDTLRMRYP----SDLMERYRLEKELPSGMELLEEIGRKRGCLRAGGKVDYEKA 269
Query: 234 AFRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 270 EQIVLTDFRSGRLGRVTLDDFP 291
>gi|149183640|ref|ZP_01862057.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
gi|148848657|gb|EDL62890.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
Length = 287
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 130/210 (61%), Gaps = 5/210 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DARIP+S+ +P++D+ + + R+++LN+ DM + W YF+++G K +
Sbjct: 24 VDIIIELVDARIPISSRNPMIDEVVQQKPRLVLLNKADMADKVLTDQWINYFSERGIKAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + +K + S+ + RS+G+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AVNAQGGTGLGDIVKASKEILSEKFDRMRSRGMKPRAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEEVGYKLALTGAIKDTILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDM 209
D+A ++ L + P LQ RY ID+
Sbjct: 204 DIAVYGLRFLEKHYP----KRLQERYGIDV 229
>gi|166031982|ref|ZP_02234811.1| hypothetical protein DORFOR_01684 [Dorea formicigenerans ATCC
27755]
gi|166028435|gb|EDR47192.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
ATCC 27755]
Length = 284
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ AW YF K+G V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARLIILNKSDLAEERWNEAWTEYFKKKGFHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA+ I +
Sbjct: 144 AAAKTGNKPGVTKGKQWIRLNKQVELLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTE 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI----DMDGTCGKTFVQKLALHLFNG-DTHQAA 234
++AA L++ L A P V L+N+Y I D G+ + L N DT +AA
Sbjct: 204 ELAAELIRFLAANYPGV----LENKYTITAAPDPYVMLGRIAESRHCLVRGNELDTEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ DFR+GK G ++LE P
Sbjct: 260 MILMDDFREGKLGRLTLEYP 279
>gi|423395861|ref|ZP_17373062.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|423406737|ref|ZP_17383886.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
gi|401653603|gb|EJS71147.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|401660027|gb|EJS77510.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
Length = 296
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKEWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + I
Sbjct: 204 DVAVYALRFMEKHYPARLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELI 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|423082353|ref|ZP_17070945.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
gi|423087745|ref|ZP_17076131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357544059|gb|EHJ26065.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357548679|gb|EHJ30539.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
Length = 298
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 37 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYKKINIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G K+ K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 157 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 217 TLALRLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 270
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 271 RIATTVLNEFRDGKIGNITLEVP 293
>gi|255100275|ref|ZP_05329252.1| putative GTPase [Clostridium difficile QCD-63q42]
gi|255306215|ref|ZP_05350387.1| putative GTPase [Clostridium difficile ATCC 43255]
gi|423090845|ref|ZP_17079131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
gi|357555960|gb|EHJ37582.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
Length = 298
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 37 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYKKINIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G K+ K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 157 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 217 TLALRLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 270
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 271 RIATTVLNEFRDGKIGNITLEVP 293
>gi|325661110|ref|ZP_08149737.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325472617|gb|EGC75828.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 283
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P +D+ N+ R+++LN+ D+ +AWA YF ++G V+
Sbjct: 24 IDLVIELVDARIPVSSRNPDIDELGKNKARLILLNKSDLAEEKQNDAWAEYFKEKGFSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
++A ++ L + P V L+ +Y I++ + + + L G DT++AA
Sbjct: 204 ELAMEMITFLTEKYPGV----LEEKYSIEISEDSYECLRRIAESRHCLVKGNELDTNKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ DFR GK G I+LE P
Sbjct: 260 ILLIDDFRSGKLGRITLEFP 279
>gi|402304192|ref|ZP_10823268.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
gi|400375431|gb|EJP28332.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
Length = 304
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + + + R++VLN+ D+ AW YFA Q +
Sbjct: 34 VDVVVELLDARIPMSSANPVLREIVAGKTRLIVLNKSDLADPTATRAWVQYFASQDIVAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT +L + + LA+ K G PRA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPRAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D AA++LA I + Y
Sbjct: 154 ARTKVENRPGVTRAKQWIRIGAQLELLDMPGILWPKFEDAHAALRLAFTGAISDTVY--- 210
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
DV +++Q+L + L+ RY + + G ++++ L G D +A
Sbjct: 211 DVGGVVLQLLRVLHADNPATLRARYGLAENLPTGVELLEEIGRRRGCLVRGGRIDYEKAD 270
Query: 235 FRILTDFRKGKFGWISLERP 254
+LTDFR G+ G ++L+ P
Sbjct: 271 QIVLTDFRSGRLGRVTLDSP 290
>gi|229104400|ref|ZP_04235069.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
gi|228679098|gb|EEL33306.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
Length = 296
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKEWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY +D + + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLDEIPEDIVELFDAIGKYRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|452995936|emb|CCQ92337.1| ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 286
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP ++ +P+MD+ +G++ RI++LN+ D+ A W ++F ++G +
Sbjct: 24 IDIVFELLDARIPSASQNPMMDEIVGHKPRIILLNKYDLSDPAVTKEWVSFFERKGGHAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G + +LA++L V KR++KG+ RA+RA IVG PNVGKSSLINRL KR
Sbjct: 84 PIDSLSGRGLETIPKLAESLTQSVQDKRQAKGMKGRAIRAMIVGIPNVGKSSLINRLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ GK+L+ LD+PGI+ + ++ LA I + D+
Sbjct: 144 SVAQTGDRPGVTKSQQWIKTGKNLDLLDTPGILWPKFGEERVGYLLAATGAIRDEILDIY 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
DVA ++++ L RY ++ + ++++ L G D ++A
Sbjct: 204 DVALFTLKIMKERYE---KRLVERYGLEEGVSDPLQILEEIGRKRGILRRGGEVDMERSA 260
Query: 235 FRILTDFRKGKFGWISLERP 254
L + R GK G ISLE P
Sbjct: 261 DLFLKELRNGKLGPISLESP 280
>gi|126698855|ref|YP_001087752.1| GTPase, MG442 type [Clostridium difficile 630]
gi|115250292|emb|CAJ68114.1| putative GTPase, MG442 type [Clostridium difficile 630]
Length = 289
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 28 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYKKINIKAI 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G K+ K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 88 PVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 148 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 208 TLALRLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 261
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 262 RIATTVLNEFRDGKIGNITLEVP 284
>gi|410456957|ref|ZP_11310804.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
gi|409926931|gb|EKN64082.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
Length = 290
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 147/264 (55%), Gaps = 15/264 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP S+ +P++D+ + ++ R+++LN+ DM + W +YFA +G K +
Sbjct: 24 VDIIFELVDARIPYSSRNPMIDEIIQHKPRLVLLNKADMADPSATKEWISYFADKGIKAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + + + + + ++KG+ PRA+RA IVG PN GKS+LINRL K+
Sbjct: 84 AINSQAGEGMKNIVQASHEILKEKFDRLKAKGVNPRAIRAMIVGIPNAGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + DQ +KLAI I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVGKEMELLDTPGILWPKFEDQEVGMKLAITGAIKDTLLNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYK----------IDMDGTCGKTFVQKLALHLFNGDT 230
D+ ++ L + L+ RYK +DM G+ +A + N D
Sbjct: 204 DLTVYSLRFLEQAYP---ERLKERYKLEALPDDENVVDMFDHIGELRGCLMAGGIVNYD- 259
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+ + ++ + R KFG I+ ERP
Sbjct: 260 -KVSELVIREIRSEKFGRITFERP 282
>gi|229098307|ref|ZP_04229254.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|229117324|ref|ZP_04246702.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|407706297|ref|YP_006829882.1| chitin-binding protein [Bacillus thuringiensis MC28]
gi|423378323|ref|ZP_17355607.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|423441431|ref|ZP_17418337.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|423448343|ref|ZP_17425222.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|423464505|ref|ZP_17441273.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|423533847|ref|ZP_17510265.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|423540884|ref|ZP_17517275.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|423547122|ref|ZP_17523480.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|423623086|ref|ZP_17598864.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|228666224|gb|EEL21688.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|228685205|gb|EEL39136.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|401128937|gb|EJQ36620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|401172072|gb|EJQ79293.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|401178843|gb|EJQ86016.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|401259859|gb|EJR66033.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|401636589|gb|EJS54343.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|402418092|gb|EJV50392.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|402420772|gb|EJV53043.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|402464066|gb|EJV95766.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|407383982|gb|AFU14483.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
MC28]
Length = 296
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKEWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY +D + + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLDEIPEDIVELFDAIGKYRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|357057766|ref|ZP_09118624.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas infelix
ATCC 43532]
gi|355375014|gb|EHG22305.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas infelix
ATCC 43532]
Length = 300
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 141/262 (53%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + +G++ R++VLN+ D+ A AW YFA G +
Sbjct: 34 VDVVVELLDARIPMSSANPVLREIVGDKPRVIVLNKADLADEAATRAWVKYFAAGGISAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGRGVKELVQAIAKCAKPKTDKLVQHGAKARAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D+ AA+ LA I + YDVA
Sbjct: 154 AKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDRQAALHLAFTGAINDNVYDVA 213
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
V +L+ L + P L++RY+++ + G ++++ L G D +A
Sbjct: 214 SVVLLLLDTLRTKYPVY----LKDRYRLEGEVPSGVELLEEIGRKRGCLRAGGRVDDEKA 269
Query: 234 AFRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 270 QQIVLTDFRCGRLGCVTLDALP 291
>gi|291530691|emb|CBK96276.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum 70/3]
gi|291557800|emb|CBL34917.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum
V10Sc8a]
Length = 282
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 140/258 (54%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V E+ D+RIP S+ +P++ G++ RI++LN+ D W Y+ QG K +
Sbjct: 28 VDAVAEIVDSRIPESSRNPVISDITGSKPRIILLNKCDYADEKVTAEWQKYYTAQGYKAM 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + K L SD+ KR++KG++ +++R +VG PNVGKSS INR+ K
Sbjct: 88 ICDCRSGKGVKAFTPNVKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKA 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +WV K+LE LD+PGI+ + DQ AIKL I + DV
Sbjct: 148 GKTKVEDRPGVTRGAQWVSLDKELELLDTPGILWPKFDDQQVAIKLGYTGAIKDDVMDVC 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG--KTFVQKLALHLFNG--DTHQAAFR 236
++A L+ L + A RYK+D + + +K + + G D +AA
Sbjct: 208 ELADNLLGYLWENYKGNVIA---RYKLDENTEKPDLEMIARKRGMLISGGEPDIERAAAA 264
Query: 237 ILTDFRKGKFGWISLERP 254
+L +FR GK G ISLERP
Sbjct: 265 VLDEFRSGKLGRISLERP 282
>gi|423615901|ref|ZP_17591735.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
gi|401260438|gb|EJR66611.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
Length = 296
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKEWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLDDIPEDIVELFDAIGKYRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|414154250|ref|ZP_11410569.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454041|emb|CCO08473.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 286
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 146/265 (55%), Gaps = 17/265 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IE+ DARIP+S+ +PL++Q LG + R++VLN+ D+ A W + G KVI
Sbjct: 26 VDVAIELLDARIPVSSGNPLINQILGQKPRLVVLNKSDLADPALTKLWLKALERPGVKVI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ R A AL ++ K ++G PRA+R ++G PNVGKSS INRL+ R
Sbjct: 86 ALDTLKGEGLKEVPRAAAALVAEQMAKLAARGRRPRAIRCLVLGIPNVGKSSFINRLVGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W+R LE LD+PGI+ + D KLAI I E+ +D+
Sbjct: 146 KAAKTGDLPGVTKGQQWIRVQGSLELLDTPGILWPKFEDPQVGYKLAITGAIKEQVFDIY 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI--------DMDGTCGKTFVQKLALHLFNG--DT 230
+VA V++L + + L+ RY++ D+ G + L + G D
Sbjct: 206 EVA---VRLLGWLASHYPDRLKERYRLSELPQNIPDLLAAIGA----RRGLLVAGGTVDV 258
Query: 231 HQAAFRILTDFRKGKFGWISLERPP 255
H+AA +L +FR+G G +L+ PP
Sbjct: 259 HKAAQLLLKEFREGLLGRYTLDMPP 283
>gi|427414160|ref|ZP_18904350.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
gi|425714536|gb|EKU77539.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
Length = 306
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 148/259 (57%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I+VLN+ D+ + W YF KQG V+
Sbjct: 33 VDVVIELLDARIPRSSANPVISEVVGQKPHIVVLNKADLANPQATKEWVAYFEKQGLTVL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G +L + + LA + K ++KG+ R+VR I+G PNVGKS+LIN+L
Sbjct: 93 AIDSKTGKGNKQLVKAVERLAQPIIDKWKNKGIRSRSVRTIILGIPNVGKSTLINKLAGA 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PG TR +WV+ GKDLE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 153 AATRTADKPGHTRGQQWVKIGKDLELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD--GTCGKTF--VQKLALHLFNG---DTHQA 233
D+ +++ Q+L ++ L RYK+ + G + + + L +G D +A
Sbjct: 210 DLESVMKQLLNQVNEANPDLLAERYKLKPEELGDANQLLESIGRRRGCLVSGGIVDLEKA 269
Query: 234 AFRILTDFRKGKFGWISLE 252
+L D+R K G ++L+
Sbjct: 270 RRIVLADYRNQKLGNLTLD 288
>gi|323691867|ref|ZP_08106121.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
gi|323504074|gb|EGB19882.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
Length = 284
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL + +P +D+ N+ RI++LN+ D+ W +F ++G VI
Sbjct: 24 IDLVIELVDARVPLGSRNPDIDELAKNKGRIILLNKSDLADEKYNEKWTAWFQEKGFHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ L + + + R +G+L R VR +VG PNVGKS+ IN +
Sbjct: 84 KVNARSGMGLKQIQPLVQEACREKIERDRKRGILNRPVRTMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K LE LD+PGI+ R DQ +KLA I + D
Sbjct: 144 ACTKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM-DGTCGKTFVQKLALHLFNG---DTHQAAFR 236
++AA L++ L I G L RY I+ D V + L G DT +AA
Sbjct: 204 ELAAELLKFL--IKHYG-RNLNERYGIETKDPYEALREVAQARSCLLKGNELDTKKAANL 260
Query: 237 ILTDFRKGKFGWISLERP 254
+L DFR GK G I+LE P
Sbjct: 261 LLDDFRSGKLGRITLEFP 278
>gi|222097283|ref|YP_002531340.1| ribosomal biogenesis gtpase [Bacillus cereus Q1]
gi|221241341|gb|ACM14051.1| GTPase family protein [Bacillus cereus Q1]
Length = 296
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R GK G ++ E P
Sbjct: 260 SELILRELRGGKLGKMTFETP 280
>gi|331085162|ref|ZP_08334248.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330407945|gb|EGG87435.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 283
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P +D+ N+ R+++LN+ D+ +AWA YF ++G V+
Sbjct: 24 IDLVIELVDARIPVSSRNPDIDELGKNKARLILLNKSDLAEEKQNDAWAEYFKEKGFSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
++A ++ L + P V L+ +Y +++ + + + L G DT++AA
Sbjct: 204 ELAMEMITFLTEKYPGV----LEEKYSVEISEDSYECLRRIAESRHCLVKGNELDTNKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ DFR GK G I+LE P
Sbjct: 260 ILLIDDFRSGKLGRITLEFP 279
>gi|284047853|ref|YP_003398192.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
gi|283952074|gb|ADB46877.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
Length = 295
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 143/264 (54%), Gaps = 12/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P++ Q +G +++I+VLN+ DM AW +YF K +
Sbjct: 33 VDVVVELLDARIPRSSANPMLQQLIGAKQKIVVLNKTDMADPERTQAWLSYFKKNSFTAL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G L + K R KG+ R++R IVG PNVGKS+LINRLL +
Sbjct: 93 EVDCQKGKGVKALVSAIQKAGEPTLEKWRKKGVRNRSIRVMIVGIPNVGKSTLINRLLGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +WV GK LE LD+PG++ + + LA+ I E +D
Sbjct: 153 NKAAAQNKPGVTRGPQWVILGKGLELLDTPGVLWPKFDNPETGFCLAVTGAIREEVFDQE 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALH---LFNG---DTHQ 232
ILVQ L ++ ++A Y+I++ + T +T +K+A L G D ++
Sbjct: 213 TAVHILVQRLLKLYPQELSA---SYRIELAPEDTV-ETVEEKIARARGCLKAGGVLDMNK 268
Query: 233 AAFRILTDFRKGKFGWISLERPPR 256
IL DF+ GK G +LE PPR
Sbjct: 269 TIQMILRDFKTGKLGSFTLEAPPR 292
>gi|229192007|ref|ZP_04318977.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
gi|228591558|gb|EEK49407.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
Length = 296
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + I
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELI 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|423612055|ref|ZP_17587916.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
gi|401247062|gb|EJR53406.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
Length = 296
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + I
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELI 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGRMTFETP 280
>gi|392940892|ref|ZP_10306536.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
gi|392292642|gb|EIW01086.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
Length = 277
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 144/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + +KRI++LN+ D+ + W YF ++G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKIKKRIILLNKADLADDVITDLWIEYFKEKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ + + D+ K++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPR-LRGMIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRALHWIKTPY-FDLLDTPGILWPKFDDKKVGIMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVDEDFELLKEIGRKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGKISLERP 277
>gi|256750723|ref|ZP_05491608.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|256750306|gb|EEU63325.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
Length = 277
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 144/260 (55%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D + N+KR+++LN+ D+ + W +F +G + +
Sbjct: 23 VDVVYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADLADDVITDLWIEFFKGKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ K + D+ +++ KG++PR +R IVG PNVGKS+ IN+L+
Sbjct: 83 KVNSITGFGLKEINEATKRVCQDILERKKQKGMIPR-LRGIIVGVPNVGKSTFINKLIGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR L W++ + LD+PGI+ + D+ I LAI I + D+
Sbjct: 142 KRAKTGDKPGVTRTLHWIKTPY-FDLLDTPGILWPKFDDKKVGIMLAITGAIKDEILDIE 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG--DTHQAA 234
++A LV +L + L +RYKID D K +K + G DT + +
Sbjct: 201 EIALNLVAILKKYYP---NYLMSRYKIDKIVDEDFELLKEIGRKRGCLIAGGEVDTLKTS 257
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFRKGK G ISLERP
Sbjct: 258 HILLEDFRKGKLGRISLERP 277
>gi|42782930|ref|NP_980177.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 10987]
gi|402556041|ref|YP_006597312.1| GTPase YlqF [Bacillus cereus FRI-35]
gi|42738857|gb|AAS42785.1| GTPase family protein [Bacillus cereus ATCC 10987]
gi|401797251|gb|AFQ11110.1| GTPase YlqF [Bacillus cereus FRI-35]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----DRLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R GK G ++ E P
Sbjct: 260 SELILRELRGGKLGKMTFETP 280
>gi|312898596|ref|ZP_07757986.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
gi|310620515|gb|EFQ04085.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
Length = 318
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 150/261 (57%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IE+ DARIP+S+T+P++ Q LG + I+V+N+ D+ W Y+ +QG V+
Sbjct: 53 IDVAIELVDARIPMSSTNPMIGQLLGQKPSIVVMNKADLADTEILKLWTAYYKEQGRMVM 112
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +L + + LA VK R+KGL R+VR I+G PNVGKS+LINRL R
Sbjct: 113 ALNSKDGKGIKQLVQAVRKLAEPKLVKWRAKGLKSRSVRTIILGIPNVGKSTLINRLAGR 172
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PG T+ +WV +L+ LD+PG++ ++ +Q A +LA I + YD+
Sbjct: 173 NATKTADKPGETKGKQWVHLADNLDLLDTPGVLWPKLEEQKCARRLAATGAISDTVYDME 232
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
+V A L+ L+ + AL+ R+K+ ++D KT ++++ + + G D +
Sbjct: 233 EVVADLITTLSVRYS---EALKKRFKLSEIDEDPYKT-IERIGRNRGAVLPGNRIDMEKT 288
Query: 234 AFRILTDFRKGKFGWISLERP 254
I+ DFR+G G ISL+ P
Sbjct: 289 YKLIIKDFREGHIGPISLDMP 309
>gi|323484794|ref|ZP_08090151.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|355627810|ref|ZP_09049441.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
gi|323401900|gb|EGA94241.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|354820135|gb|EHF04561.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
Length = 284
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL + +P +D+ N+ RI++LN+ D+ W +F ++G VI
Sbjct: 24 IDLVIELVDARVPLGSRNPDIDELAKNKGRIILLNKSDLADERYNEKWTAWFQEKGFHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ L + + + R +G+L R VR +VG PNVGKS+ IN +
Sbjct: 84 KVNARSGMGLKQIQPLVQEACREKIERDRKRGILNRPVRTMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K LE LD+PGI+ R DQ +KLA I + D
Sbjct: 144 ACTKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM-DGTCGKTFVQKLALHLFNG---DTHQAAFR 236
++AA L++ L I G L RY I+ D V + L G DT +AA
Sbjct: 204 ELAAELLKFL--IKHYG-RNLNERYGIETEDPYEALREVAQARSCLLKGNELDTKKAANL 260
Query: 237 ILTDFRKGKFGWISLERP 254
+L DFR GK G I+LE P
Sbjct: 261 LLDDFRSGKLGRITLEFP 278
>gi|229174504|ref|ZP_04302036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
gi|228609064|gb|EEK66354.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGQMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|167750815|ref|ZP_02422942.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702]
gi|167656250|gb|EDS00380.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium siraeum
DSM 15702]
Length = 282
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V E+ D+RIP S+ +P++ G++ RI++LN+ D W Y+ QG K +
Sbjct: 28 VDAVAEIVDSRIPESSRNPVISDITGSKPRIILLNKCDYADEKVTAEWQKYYTAQGYKAM 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + K L SD+ KR++KG++ +++R +VG PNVGKSS INR+ K
Sbjct: 88 ICDCRSGKGVKAFTPNVKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKA 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +WV K+LE LD+PGI+ + DQ AIKL I + DV
Sbjct: 148 GKTKVEDRPGVTRGAQWVSLDKELELLDTPGILWPKFDDQQVAIKLGYTGAIKDDVMDVC 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG--KTFVQKLALHLFNG--DTHQAAFR 236
++A L+ L + RYK+D + + +K + + G D +AA
Sbjct: 208 ELADSLLGYLWENYKGNVI---TRYKLDENTEKPDLEMIARKRGMLISGGEPDIERAAAA 264
Query: 237 ILTDFRKGKFGWISLERP 254
+L +FR GK G ISLERP
Sbjct: 265 VLDEFRSGKLGRISLERP 282
>gi|423401320|ref|ZP_17378493.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|423457979|ref|ZP_17434776.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|423477976|ref|ZP_17454691.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
gi|401148363|gb|EJQ55856.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|401654310|gb|EJS71853.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|402428138|gb|EJV60235.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGQMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + I
Sbjct: 204 DVAVYALRFMEKHYPERLKDRYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELI 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|408789568|ref|ZP_11201223.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Lactobacillus
florum 2F]
gi|408521174|gb|EKK21160.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Lactobacillus
florum 2F]
Length = 289
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 143/261 (54%), Gaps = 14/261 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP+S+ +P + + N+ R+L+L + D+ W +F KQG I
Sbjct: 26 VDVVFEILDARIPISSINPEITRISRNKPRLLILTKADLADPQLTKQWLLWFQKQGQAAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + K+ + AK L ++ ++++KG P+ ++A VG PNVGKS+L+N+L+ R
Sbjct: 86 TIDAKTPGVQKKVEQAAKRLLANKLSQQQAKGFSPQKIKAICVGVPNVGKSTLLNQLINR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R P RPGVT+ +W+ LE LD+PGI+ + +DQ A KLA+ I ER+Y
Sbjct: 146 RSAPVGNRPGVTKGQQWLTGNGHLELLDTPGILWPKFADQRVAEKLALTGAIRERAYHSD 205
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDM------DGTCGKTFVQKLALHLFNGDTHQA 233
DVA +Q + P V L RY +D+ + T KL + D +A
Sbjct: 206 DVALFAIQFFKQTSPNV----LLQRYHLDVSELELANPELLLTITAKLGM---KDDYDRA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A RI+TD RKGK G +L+ P
Sbjct: 259 ADRIITDVRKGKLGPFTLDNP 279
>gi|160892724|ref|ZP_02073514.1| hypothetical protein CLOL250_00254 [Clostridium sp. L2-50]
gi|156865765|gb|EDO59196.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
L2-50]
Length = 285
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 139/259 (53%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P S+ +P +D N+ R+++LN+ D+ A W Y+ ++G V
Sbjct: 24 IDVVIELIDARVPYSSKNPDIDALAANKYRLILLNKTDLADAAVTAEWEAYYKEKGFFVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +S + K + + R +G++ R +RA IVG PNVGKS+ IN ++
Sbjct: 84 KINARSGDGMKNISNVVKEACKEKIERDRKRGIINRPLRAMIVGIPNVGKSTFINSYARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R GKD+E LD+PGI+ + D+ ++LA I + +
Sbjct: 144 ACTKVGNKPGVTKGKQWIRLGKDIELLDTPGILWPKFDDKEVGLRLAFIGSINDEILSIT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ---KLALHLFNG--DTHQAAF 235
D+A L++ L +L +RY I+ D Q K A G D +AA
Sbjct: 204 DLAYELIKFLQ---LNYCQSLADRYNINDDDDSVHILEQIAEKRACIKKGGELDIDKAAA 260
Query: 236 RILTDFRKGKFGWISLERP 254
+L D+R GK G ISLERP
Sbjct: 261 LLLDDYRSGKLGRISLERP 279
>gi|313885159|ref|ZP_07818911.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619850|gb|EFR31287.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
Length = 290
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 141/261 (54%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + ++KRI+VLN+ D+ AW + +QG K +
Sbjct: 25 IDVVIELVDARIPESSRNPILQDLIQDKKRIIVLNKADLADPKLSQAWVKAYLEQGFKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G L + K L + K KGL PR +R I+G PNVGKS+LINR + +
Sbjct: 85 SIDAQHNKGLKGLEKAIKELMAPEFEKLAQKGLKPRPIRLMILGIPNVGKSTLINRFVGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ GK E LD+PGI+ + D+ I LA+ I ++ +
Sbjct: 145 NQAITGNKPGVTKAQRWLKIGKSFELLDTPGILWPKFEDEQVGINLALTGAIKDQLLHMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-----FNGDTHQAAF 235
D+A + +LA + + +L N K+ D T V L L L F D +
Sbjct: 205 DLA---LTLLAILREHYLDSLCNYTKLSNDSLAKLTNVD-LLLTLSQNWGFKDDYDAGSE 260
Query: 236 RILTDFRKGKFGWISLERPPR 256
R++ DFRKGK G I+L+R P
Sbjct: 261 RLINDFRKGKVGRITLDRIPE 281
>gi|310658878|ref|YP_003936599.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
gi|308825656|emb|CBH21694.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
Length = 328
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 13/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR P ST++P +D + N +++VLN+ED+ W Y+ +G +
Sbjct: 67 VDVVLEIVDARAPYSTSNPDIDDMVKNLPKVVVLNKEDLADSNKTQQWIEYYKTKGHESA 126
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L + D+ K SKG RA+R +VG PNVGKSS+INR++ +
Sbjct: 127 MINSLTGKGLNELLASLNNKSKDLYKKLESKGRRKRALRVMVVGIPNVGKSSIINRIVGK 186
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +WV+ DLE LD+PG++ +I DQ+ A+KLA I ++ ++
Sbjct: 187 KSAQTGDRPGVTKGKQWVKLKGDLELLDTPGVLWPKIEDQSVAMKLAFLGSIKDQVMEIE 246
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKI-----DMDGTCGKTFVQKLALHLFNG---DTH 231
++A L++ L I P + R+++ DM+ F+ ++ G D
Sbjct: 247 EIAMELIKYLKEIKPQI----FSERFELDKDISDMEAIAIADFIAFKRGYILPGNQVDYF 302
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + +L +FR GK G I+LE P
Sbjct: 303 RLSSSLLMEFRAGKLGTITLETP 325
>gi|228986981|ref|ZP_04147107.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772759|gb|EEM21199.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|30021926|ref|NP_833557.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 14579]
gi|218236121|ref|YP_002368639.1| ribosomal biogenesis GTPase [Bacillus cereus B4264]
gi|228960054|ref|ZP_04121718.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047525|ref|ZP_04193115.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|229111309|ref|ZP_04240862.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|229129114|ref|ZP_04258087.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|229146409|ref|ZP_04274780.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|229152037|ref|ZP_04280232.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|296504333|ref|YP_003666033.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|423585753|ref|ZP_17561840.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|423628931|ref|ZP_17604680.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|423641081|ref|ZP_17616699.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|423649701|ref|ZP_17625271.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|423656697|ref|ZP_17631996.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
gi|81580508|sp|Q819W8.1|RBGA_BACCR RecName: Full=Ribosome biogenesis GTPase A
gi|29897482|gb|AAP10758.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218164078|gb|ACK64070.1| GTPase family protein [Bacillus cereus B4264]
gi|228631386|gb|EEK88020.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|228637042|gb|EEK93501.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|228654351|gb|EEL10216.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|228672085|gb|EEL27376.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|228723772|gb|EEL75127.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|228799570|gb|EEM46523.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325385|gb|ADH08313.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|401233099|gb|EJR39595.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|401268476|gb|EJR74524.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|401280142|gb|EJR86064.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|401282981|gb|EJR88878.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|401290438|gb|EJR96132.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|217961258|ref|YP_002339826.1| ribosomal biogenesis GTPase [Bacillus cereus AH187]
gi|229140481|ref|ZP_04269036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|229157414|ref|ZP_04285492.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|229197948|ref|ZP_04324663.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|375285761|ref|YP_005106200.1| GTPase family protein [Bacillus cereus NC7401]
gi|384181651|ref|YP_005567413.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|423353540|ref|ZP_17331167.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|423374365|ref|ZP_17351703.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|423567267|ref|ZP_17543514.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|423574556|ref|ZP_17550675.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|423604535|ref|ZP_17580428.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
gi|217065992|gb|ACJ80242.1| GTPase family protein [Bacillus cereus AH187]
gi|228585527|gb|EEK43630.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|228626141|gb|EEK82890.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|228643042|gb|EEK99318.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|324327735|gb|ADY22995.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354288|dbj|BAL19460.1| GTPase family protein [Bacillus cereus NC7401]
gi|401089353|gb|EJP97524.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|401094277|gb|EJQ02359.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|401212081|gb|EJR18827.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|401214355|gb|EJR21085.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|401245155|gb|EJR51513.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|225568159|ref|ZP_03777184.1| hypothetical protein CLOHYLEM_04233 [Clostridium hylemonae DSM
15053]
gi|225163112|gb|EEG75731.1| hypothetical protein CLOHYLEM_04233 [Clostridium hylemonae DSM
15053]
Length = 282
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP S+ +P +D+ N+ R+++LN+ D+ +AWA YF K+G V+
Sbjct: 24 IDLVIELVDARIPQSSRNPDIDELGKNKARLILLNKADLAEEKWNDAWAEYFRKKGFSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGMKSIHGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R + +E LD+PGI+ + DQ +KLA I +
Sbjct: 144 SCTKTGNKPGVTKGKQWIRLNRQVELLDTPGILWPKFEDQQVGLKLAFVGSIKDEVLQTE 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
++AA L++ ML P V L +Y ++ D T + + L G DT +AA
Sbjct: 204 ELAAELIRFMLDHYPGV----LGKKYAVEEDNDVYVTLSRIAESRHCLVRGNELDTEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+ DFR GK G ++LE P
Sbjct: 260 LLLTDDFRNGKLGRLTLEYP 279
>gi|423582048|ref|ZP_17558159.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
gi|401212927|gb|EJR19668.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGIKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|163941576|ref|YP_001646460.1| ribosomal biogenesis GTPase [Bacillus weihenstephanensis KBAB4]
gi|229168577|ref|ZP_04296300.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|423518528|ref|ZP_17495009.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|423592166|ref|ZP_17568197.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|423669412|ref|ZP_17644441.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|423674409|ref|ZP_17649348.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
gi|163863773|gb|ABY44832.1| GTP-binding protein HSR1-related [Bacillus weihenstephanensis
KBAB4]
gi|228614983|gb|EEK72085.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|401160736|gb|EJQ68111.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|401232299|gb|EJR38801.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|401298539|gb|EJS04139.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|401309960|gb|EJS15293.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G K I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFDERGQKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAIYALRFMEKHYP----ERLKERYNLNDIPEEIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL + R G+ G ++ E P
Sbjct: 260 SELILRELRGGRLGKMTFETP 280
>gi|206972755|ref|ZP_03233685.1| GTPase family protein [Bacillus cereus AH1134]
gi|218898991|ref|YP_002447402.1| ribosomal biogenesis GTPase [Bacillus cereus G9842]
gi|228909663|ref|ZP_04073486.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|228940926|ref|ZP_04103485.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228954114|ref|ZP_04116143.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228966783|ref|ZP_04127827.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228973855|ref|ZP_04134431.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980445|ref|ZP_04140755.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|229071336|ref|ZP_04204559.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|229081093|ref|ZP_04213603.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|229180114|ref|ZP_04307458.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|384187898|ref|YP_005573794.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402558836|ref|YP_006601560.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|410676212|ref|YP_006928583.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|423359126|ref|ZP_17336629.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|423385341|ref|ZP_17362597.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|423412357|ref|ZP_17389477.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|423425974|ref|ZP_17403005.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|423431858|ref|ZP_17408862.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|423437293|ref|ZP_17414274.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|423503485|ref|ZP_17480077.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|423528301|ref|ZP_17504746.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|423635391|ref|ZP_17611044.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|449090779|ref|YP_007423220.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200277|ref|YP_007480358.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|206732320|gb|EDZ49512.1| GTPase family protein [Bacillus cereus AH1134]
gi|218544561|gb|ACK96955.1| GTPase family protein [Bacillus cereus G9842]
gi|228603323|gb|EEK60800.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|228702137|gb|EEL54613.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|228711790|gb|EEL63742.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|228779265|gb|EEM27522.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|228785880|gb|EEM33883.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228792882|gb|EEM40440.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228805680|gb|EEM52270.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228818762|gb|EEM64828.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228849952|gb|EEM94783.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|326941607|gb|AEA17503.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401084998|gb|EJP93244.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|401104425|gb|EJQ12402.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|401110721|gb|EJQ18620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|401116614|gb|EJQ24452.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|401120448|gb|EJQ28244.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|401278142|gb|EJR84078.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|401635397|gb|EJS53152.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|401787488|gb|AFQ13527.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|402451964|gb|EJV83783.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|402458839|gb|EJV90579.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|409175341|gb|AFV19646.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|449024536|gb|AGE79699.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105670|gb|AGG02610.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|228902341|ref|ZP_04066498.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|423561756|ref|ZP_17538032.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|434376941|ref|YP_006611585.1| GTPase YlqF [Bacillus thuringiensis HD-789]
gi|228857310|gb|EEN01813.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|401202013|gb|EJR08878.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|401875498|gb|AFQ27665.1| GTPase YlqF [Bacillus thuringiensis HD-789]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKQYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|228922592|ref|ZP_04085892.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|365159385|ref|ZP_09355566.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
gi|228837021|gb|EEM82362.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363625383|gb|EHL76424.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|403234817|ref|ZP_10913403.1| GTPase YlqF [Bacillus sp. 10403023]
Length = 280
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 142/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++D+ + N+ R+L+LN+ D W +Y+ + G +
Sbjct: 24 IDIVFELVDARIPASSRNPMIDEIIKNKPRLLLLNKADKADPKVTKEWISYYKESGVHAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ AK + +D K +KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSQAGEGMKQIVNEAKVILTDKFDKMAAKGIRPRAIRALIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T+ W++ GK+LE LD+PGI+ + DQ +KLA I + ++
Sbjct: 144 NIAQTGDRPGITKAQSWIKVGKELELLDTPGILWPKFEDQEVGLKLATTGAIKDTILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDM---DGTCGKTFVQKLALHLFNG---DTHQA 233
D+A ++ L P L+ R+ +D D + K + +G D +
Sbjct: 204 DIAVYALRFLEENYP----DNLKERFDLDQIPDDIVILFDEIAKRRGTMMSGGLTDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ + R K G ++ E+P
Sbjct: 260 AELIIREIRTEKLGRLTFEKP 280
>gi|292670871|ref|ZP_06604297.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
ATCC 43541]
gi|292647492|gb|EFF65464.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
ATCC 43541]
Length = 299
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + + + R++VLN+ D+ AW YFA +G +
Sbjct: 33 VDVVVELLDARIPMSSANPVLREIVNGKPRLIVLNKADLADETATRAWVKYFAAEGLTAV 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 93 PVDAVKGRGVKELVQAIAKCAKPKTDKLVHHGAKARAARCMILGIPNVGKSSLINRLSGG 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + DQ AA+ LA I + YDVA
Sbjct: 153 SKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDQHAALHLAFTGAINDNVYDVA 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L T + L RY+++ + G ++++ L G D +A
Sbjct: 213 SVVLLLLDTLR---TAYPSDLMERYRLEGELPSGAALLEEIGRKRGCLRAGGKIDYEKAE 269
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 270 QIVLTDFRSGRLGRVTLDVLP 290
>gi|260682865|ref|YP_003214150.1| GTPase [Clostridium difficile CD196]
gi|260686463|ref|YP_003217596.1| GTPase [Clostridium difficile R20291]
gi|260209028|emb|CBA62129.1| putative GTPase [Clostridium difficile CD196]
gi|260212479|emb|CBE03390.1| putative GTPase [Clostridium difficile R20291]
Length = 301
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 141/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 40 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYKKINIKAI 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G + K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 100 PVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 160 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 219
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 220 TLALRLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 273
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 274 RIAATVLNEFRDGKIGNITLEVP 296
>gi|254974803|ref|ZP_05271275.1| putative GTPase [Clostridium difficile QCD-66c26]
gi|255092191|ref|ZP_05321669.1| putative GTPase [Clostridium difficile CIP 107932]
gi|255313930|ref|ZP_05355513.1| putative GTPase [Clostridium difficile QCD-76w55]
gi|255516609|ref|ZP_05384285.1| putative GTPase [Clostridium difficile QCD-97b34]
gi|255649709|ref|ZP_05396611.1| putative GTPase [Clostridium difficile QCD-37x79]
gi|306519822|ref|ZP_07406169.1| putative GTPase [Clostridium difficile QCD-32g58]
gi|384360454|ref|YP_006198306.1| GTPase [Clostridium difficile BI1]
Length = 298
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 141/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ +G++ R++VLN+ DM N W Y+ K K I
Sbjct: 37 IDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYKKINIKAI 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G + K + + + KG RA+R IVG PNVGKSSLIN+L R
Sbjct: 97 PVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +WVR +LE LD+PGI+ + DQ A+ LA I + D
Sbjct: 157 KSTQTGDKPGVTKGKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL--H---LFNG----DTH 231
+A L++ L +I L+ RYK+D G+T ++ + + H G D
Sbjct: 217 TLALRLIEKLMKIEP---EKLKARYKLD---CLGETPIETMDMIGHKRGFITGKKELDYT 270
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A +L +FR GK G I+LE P
Sbjct: 271 RIAATVLNEFRDGKIGNITLEVP 293
>gi|268611247|ref|ZP_06144974.1| GTP-binding protein YlqF [Ruminococcus flavefaciens FD-1]
Length = 293
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DAR PLS+ +P MD N+ R++VLN+ D+ W YF G++ I
Sbjct: 30 VDAVVEIVDARTPLSSRNPEMDSMTRNKPRLIVLNKCDLADKKATQKWINYFRNNGSEAI 89
Query: 61 FSNGQLGMGTMKLSRLAKA-LASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + G G L + + + ++ KR G+ AVR IVG PNVGKSSLINR+
Sbjct: 90 AVDCKSGKGLKNLLPVVRTKVLKELMEKRERSGMKGAAVRLMIVGIPNVGKSSLINRMAG 149
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVTR +WV+ + E LD PG++ + DQ+AA++LA G S D+
Sbjct: 150 GKRAKVEDRPGVTRTKQWVKLDNNTELLDMPGVLWPKFEDQSAAVRLAFT---GAISDDI 206
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDM-DGTCGKTFVQKL----ALHLFNGD--THQ 232
D+ + +++L + ++L RYKI D G ++K+ + + G+ T +
Sbjct: 207 LDIETLAMKLLVFLSENYPSSLTERYKIGYSDDDTGLILLEKVGKKRGMMISGGEINTER 266
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +L +FR GK G I+LE P
Sbjct: 267 AAITVLDEFRSGKLGHITLELP 288
>gi|422343784|ref|ZP_16424711.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
F0398]
gi|355378200|gb|EHG25391.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
F0398]
Length = 310
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + + + R++VLN+ D+ AW YFA +G +
Sbjct: 44 VDVVVELLDARIPMSSANPVLREIVNGKPRLIVLNKADLADETATRAWVKYFAAEGLTAV 103
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A K G RA R I+G PNVGKSSLINRL
Sbjct: 104 PVDAVKGRGVKELVQAIAKCAKPKTDKLVHHGAKARAARCMILGIPNVGKSSLINRLSGG 163
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPG+TR +W+R G LE LD PGI+ + DQ AA+ LA I + YDVA
Sbjct: 164 SKTKVENRPGITRAKQWIRLGAQLELLDMPGILWPKFEDQNAALHLAFTGAINDNVYDVA 223
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L T + L RY+++ + G ++++ L G D +A
Sbjct: 224 SVVLLLLDTLR---TAYPSDLMERYRLEGELPSGAALLEEIGRKRGCLRAGGKIDYEKAE 280
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR G+ G ++L+ P
Sbjct: 281 QIVLTDFRSGRLGRVTLDVLP 301
>gi|118479060|ref|YP_896211.1| ribosomal biogenesis GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418285|gb|ABK86704.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
str. Al Hakam]
Length = 314
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 42 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 101
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 102 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 161
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 162 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 221
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 222 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 277
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 278 SELVLRELRGGKLGKMTFETP 298
>gi|261419404|ref|YP_003253086.1| ribosomal biogenesis GTPase [Geobacillus sp. Y412MC61]
gi|297530621|ref|YP_003671896.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|319766219|ref|YP_004131720.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|448237360|ref|YP_007401418.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
gi|261375861|gb|ACX78604.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC61]
gi|297253873|gb|ADI27319.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|317111085|gb|ADU93577.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|445206202|gb|AGE21667.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
Length = 288
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 142/261 (54%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DAR+P+S+ +P++D+ LG + R+++LN+ DM A W YF QG +
Sbjct: 27 IDVAFELLDARVPMSSRNPMIDEILGQKPRLILLNKADMADEAVTEQWIRYFHDQGRLAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G +++ AK + D K R+KG+ PR VRA IVG PNVGKS+LINRL
Sbjct: 87 PIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAG 146
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 147 RHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNL 206
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQA 233
DVA ++ L+ T L RY +D D + + L +G D +
Sbjct: 207 QDVAVYALRFLS---THYPNRLAERYGLDDIPDDIVALFDAIGRRRGCLTSGGAVDYDKV 263
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L D R K G +S E P
Sbjct: 264 ADIVLYDIRTEKLGRLSFETP 284
>gi|418033249|ref|ZP_12671726.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351469397|gb|EHA29573.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 282
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F KQG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEKQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|229162774|ref|ZP_04290731.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
gi|228620656|gb|EEK77525.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
Length = 296
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA + + + P L+ RY + D+ + F V K L G D +
Sbjct: 204 DVAVYAFRFMEKHYP----ERLKERYNLNDIPEDIVELFDAVGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|56419739|ref|YP_147057.1| ribosomal biogenesis GTPase [Geobacillus kaustophilus HTA426]
gi|56379581|dbj|BAD75489.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 286
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 142/261 (54%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DAR+P+S+ +P++D+ LG + R+++LN+ DM A W YF QG +
Sbjct: 25 IDVAFELLDARVPMSSRNPMIDEILGQKPRLILLNKADMADEAVTEQWIRYFHDQGRLAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G +++ AK + D K R+KG+ PR VRA IVG PNVGKS+LINRL
Sbjct: 85 PIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAG 144
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 145 RHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNL 204
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQA 233
DVA ++ L+ T L RY +D D + + L +G D +
Sbjct: 205 QDVAVYALRFLS---THYPNRLAERYGLDDIPDDIVALFDTIGRRRGCLTSGGAVDYDKV 261
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L D R K G +S E P
Sbjct: 262 ADIVLYDIRTEKLGRLSFETP 282
>gi|167758981|ref|ZP_02431108.1| hypothetical protein CLOSCI_01327 [Clostridium scindens ATCC 35704]
gi|336422972|ref|ZP_08603111.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
gi|167663388|gb|EDS07518.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium scindens
ATCC 35704]
gi|336006818|gb|EGN36850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 282
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P +D+ N+ R+++LN+ D+ +AWA YF ++G V+
Sbjct: 24 IDLVIELVDARIPVSSRNPDIDELGKNKSRMILLNKADLAEDKWNDAWAEYFREKGFFVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KLNSKKGGGLKSIQGVIQEACKEKMERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKQVELLDTPGILWPKFEDQKVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNG---DTHQAA 234
++AA L++ L A P V L+ +Y ++ D + + L G DT +AA
Sbjct: 204 ELAAELIKFLNANYPGV----LEEKYSVEPSDDAYVMLAGIARSRNCLLKGSELDTEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR GK G ++LE P
Sbjct: 260 LLLLDDFRNGKLGRLTLEYP 279
>gi|52141650|ref|YP_085179.1| ribosomal biogenesis GTPase [Bacillus cereus E33L]
gi|218904967|ref|YP_002452801.1| ribosomal biogenesis GTPase [Bacillus cereus AH820]
gi|225865819|ref|YP_002751197.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228916475|ref|ZP_04080041.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928886|ref|ZP_04091918.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935152|ref|ZP_04097979.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947557|ref|ZP_04109847.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229092880|ref|ZP_04224014.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|229123352|ref|ZP_04252556.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|229186078|ref|ZP_04313247.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|254721976|ref|ZP_05183765.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A1055]
gi|301055328|ref|YP_003793539.1| GTP-binding protein HSR1-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267734|ref|YP_005120446.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|423550413|ref|ZP_17526740.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
gi|51975119|gb|AAU16669.1| conserved hypothetical protein; GTPase family [Bacillus cereus
E33L]
gi|218539759|gb|ACK92157.1| GTPase family protein [Bacillus cereus AH820]
gi|225788163|gb|ACO28380.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228597254|gb|EEK54905.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|228660128|gb|EEL15764.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|228690502|gb|EEL44285.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|228812077|gb|EEM58408.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824517|gb|EEM70322.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830693|gb|EEM76298.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843054|gb|EEM88136.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377497|gb|ADK06401.1| GTP-binding protein HSR1-related protein [Bacillus cereus biovar
anthracis str. CI]
gi|364513534|gb|AEW56933.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|401190029|gb|EJQ97079.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
Length = 296
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|319649583|ref|ZP_08003739.1| GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398745|gb|EFV79427.1| GTPase [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DARIP S+ +P++D+ + ++ R+++LN+ DM W +F +G + +
Sbjct: 24 VDIIFELVDARIPYSSRNPMIDEIIQHKPRLVLLNKADMADKEATKKWIKHFEDKGIRAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ ++++ + + ++KG+ PRA+RA IVG PN GKS+LINRL K+
Sbjct: 84 AINSQAGQGMKEIVSASQSILQEKFDRMKAKGVKPRAIRAMIVGIPNAGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK+LE LD+PGI+ + DQ +KLA+ I + ++
Sbjct: 144 NIARTGNTPGVTKAQQWIKVGKELELLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQ 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ L R P L RY++D + + F + +L L G D +
Sbjct: 204 DVAVYALRFLGLRYP----DRLHERYQLDEIPEDIVEVFDKIGRLRGCLMGGGEIDYDKV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
++ +FR K G I+LE P
Sbjct: 260 TELVIREFRSEKLGPITLELP 280
>gi|239826597|ref|YP_002949221.1| ribosomal biogenesis GTPase [Geobacillus sp. WCH70]
gi|338819267|sp|C5D8U8.1|RBGA_GEOSW RecName: Full=Ribosome biogenesis GTPase A
gi|239806890|gb|ACS23955.1| GTP-binding protein HSR1-related [Geobacillus sp. WCH70]
Length = 283
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 142/262 (54%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P++ + LGN+ RI++LN+ DM W YF +Q +
Sbjct: 26 IDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADMADETVTEQWIAYFERQQLHAL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ AK + D K +KG+ PR +RA IVG PNVGKS+LINRL
Sbjct: 86 AIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPMRALIVGIPNVGKSTLINRLAG 145
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ +KLA I + ++
Sbjct: 146 RNIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEEVGLKLATTGAIKDTILNL 205
Query: 180 ADVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQ 232
DVA + L + P L+ RY + D+ G F + K L +G D +
Sbjct: 206 QDVAVYALNFLKQHYP----ERLKERYSLDDIPGEIVALFDAIGKRRGCLVSGGAVDYDK 261
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+ +L D R K G +S E P
Sbjct: 262 VSEIVLHDIRTEKLGRLSFETP 283
>gi|311068126|ref|YP_003973049.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|419823894|ref|ZP_14347427.1| GTPase YlqF [Bacillus atrophaeus C89]
gi|310868643|gb|ADP32118.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|388471931|gb|EIM08721.1| GTPase YlqF [Bacillus atrophaeus C89]
Length = 281
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 141/268 (52%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ RI++LN+ D A W +F KQG +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKADKADAAVTKQWKEHFEKQGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ +K L + KR++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SIDSVNGQGLNQIVPSSKELLQEKIDKRKAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LAI I + ++
Sbjct: 144 NIAKTGDRPGITISQQWVKVGKELELLDTPGILWPKFEDELVGLRLAITGAIKDSIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPDRLKERYGLEEIPEDIAELFDAIGEKRGCLMSGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
+ + I+ D R KFG +S E+P
Sbjct: 253 LINYDKTTEVIIRDIRTEKFGRLSFEQP 280
>gi|312111696|ref|YP_003990012.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|336236071|ref|YP_004588687.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720614|ref|ZP_17694796.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216797|gb|ADP75401.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|335362926|gb|AEH48606.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365967|gb|EID43258.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
Length = 281
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 146/262 (55%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ LGN+ RI++LN+ DM A W YF +Q + +
Sbjct: 24 IDIVFELLDARIPMSSRNPMINEILGNKPRIVLLNKADMADEAATQQWIAYFQQQQLRAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ ++K + D K +KG+ PR +RA IVG PNVGKS+LINRL
Sbjct: 84 AIDAQTGTGIKQIVAVSKEMLKDKFAKMAAKGIKNPRPMRALIVGIPNVGKSTLINRLAG 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + ++ +KLA I + ++
Sbjct: 144 RNIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEEEEVGLKLATTGAIKDTILNL 203
Query: 180 ADVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQ 232
DVA + L + P L+ RY + D+ + F + + L +G D +
Sbjct: 204 QDVAVYALNFLKQHYP----ERLKERYSLDDIPEEIAELFAAIGRRRGCLVSGGAVDYDK 259
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A +L D R + G IS E P
Sbjct: 260 VAEIVLHDIRTERLGRISFETP 281
>gi|428279199|ref|YP_005560934.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|291484156|dbj|BAI85231.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
Length = 282
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F KQG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQRWKEHFEKQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|452991215|emb|CCQ97470.1| Ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 282
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V EV DARIP S+ +P +D LG + RI++LN+ D+ M W YF K+G +
Sbjct: 24 VDIVYEVIDARIPFSSQNPEIDGILGRKSRIIILNKSDLADMESNKKWQDYFGKKGISSV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ +L+ L + KG+ R +R IVG PNVGKS+LIN L KR
Sbjct: 84 IVDCINNRGLEEVIKLSYRLTGERRRHLAKKGIKNRPIRVMIVGVPNVGKSTLINSLSKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTRV +W+R DLE LD+PGI+ + D+ + LA I + D+
Sbjct: 144 KGTKVGNKPGVTRVNQWIRLKGDLELLDTPGILWPKFEDKEVGLNLAFTGAIKDELLDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
++A ++++ R+ + ++ RY I ++ + ++ + G D +A+
Sbjct: 204 NLA---IKLVERLNAMSKAFIEERYDILVENKAPHDIILEIGKKRGCIVKGGEIDFSKAS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FRKG G I+LE P
Sbjct: 261 NIILDEFRKGIIGRITLELP 280
>gi|332653030|ref|ZP_08418775.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
gi|332518176|gb|EGJ47779.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
Length = 292
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 144/265 (54%), Gaps = 12/265 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DARIP+S+ +P +D + R+++LNR D A AW +F K+G V+
Sbjct: 24 VDIVVEIIDARIPISSRNPDIDAICAGKPRLVILNRADQADPAQNKAWGEWFRKRGCSVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + G G + S + + + D + + +GL+ R VRA IVG PNVGKS+ IN++ KR
Sbjct: 84 ETDAKTGKGVGQFSAVVQNVLKDQIARWQERGLVGRPVRAMIVGVPNVGKSTFINKVAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A RPGVTR +WV + LE LD+PGI+ + D+ ++LA + + DV
Sbjct: 144 KTAKAGDRPGVTRGKQWVTVDRGLELLDTPGILWPKFEDEEIGLRLAFTGAVKDEIMDVE 203
Query: 181 DVAAILVQMLARI------PTVGITALQNRYKIDMDGTCG----KTFVQKLALHLFNG-- 228
+ L+ LA ++A+ R + + D G +T QK + + G
Sbjct: 204 TLGCHLMTFLATYYPDALAAGYKLSAVPQRDEEENDVAYGYRLLETCAQKRGMRISGGEF 263
Query: 229 DTHQAAFRILTDFRKGKFGWISLER 253
DT + A +L ++R GK G +LE+
Sbjct: 264 DTERMARVLLDEYRGGKLGRFTLEQ 288
>gi|167630258|ref|YP_001680757.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
gi|167592998|gb|ABZ84746.1| GTP-binding protein, putative [Heliobacterium modesticaldum Ice1]
Length = 283
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 140/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ +E+ DARIPLS+ +P +D+ LG + RI++LN+ D+ A + YF Q +
Sbjct: 25 VDLALELVDARIPLSSRNPDIDRILGEKPRIILLNKADLAEPAATRCFIDYFRLQSIPAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ L + + + R +G+ PRA RA +VG PNVGKSSLINRL R
Sbjct: 85 SIDAVSGEGVRAIAPLVEQTLKPLIQRWRQRGMRPRAFRAMVVGIPNVGKSSLINRLAGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A RPGVTR +WVR G+ LE LD+PGI+ + D KL+ + + V
Sbjct: 145 HRTVTADRPGVTRGPQWVRIGQKLELLDTPGILWPKFEDPLVGFKLSATGAVSDLVVQVQ 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+VA ++Q L+ V ++ RY M ++ +A L +G D +AA
Sbjct: 205 EVAQFILQFLS---DVAPQSVAERYGFQMGEIADVEWLDAVARRRGFLGSGGVLDREKAA 261
Query: 235 FRILTDFRKGKFGWISLERP 254
+L+DFR GK G +L++P
Sbjct: 262 IHVLSDFRSGKLGRHTLDKP 281
>gi|177656002|ref|ZP_02937129.1| GTPase family protein [Bacillus anthracis str. A0174]
gi|254735876|ref|ZP_05193582.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|172079901|gb|EDT65009.1| GTPase family protein [Bacillus anthracis str. A0174]
Length = 296
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADARLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PR +RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|49478407|ref|YP_037899.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329963|gb|AAT60609.1| conserved hypothetical protein, GTPase family [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 296
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 146/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PR++RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRSIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|332799158|ref|YP_004460657.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
gi|332696893|gb|AEE91350.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 147/263 (55%), Gaps = 22/263 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR PLST P ++ +GN+ I+++N+ D+ + W YF KQG K I
Sbjct: 24 VDVVLELTDARAPLSTHLPDINSLIGNKNSIMIMNKADLADKKITDMWLKYFKKQGIKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N ++K S L NVK+++ + R+ R I+G PNVGKSSLIN++ R
Sbjct: 84 AVN------SLKKSELKNLYNLLGNVKKKT---VLRSTRCMIIGIPNVGKSSLINQMAGR 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A PGVTR W++ +LE LD+PGI+ + D+ IKLAI I + D
Sbjct: 135 KSARTADIPGVTRNKMWLKVDDNLELLDTPGILWPKFEDKTTGIKLAILGSIKQELLDFE 194
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++ IL++ +L P AL++RY + D + ++K+A + L G D +++
Sbjct: 195 KLSLILIKYLLVNYP----QALKDRYGV--DSSTPAEILEKIAQNRGFLVEGGVFDINRS 248
Query: 234 AFRILTDFRKGKFGWISLERPPR 256
A ++ +FR+GK G ISLE+P
Sbjct: 249 AKTLINEFRQGKLGRISLEKPEE 271
>gi|229031468|ref|ZP_04187468.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
gi|228729757|gb|EEL80737.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
Length = 296
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 3/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++ I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKDQMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMAAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++ + + + N +I D + K L G D + + +
Sbjct: 204 DVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELV 263
Query: 238 LTDFRKGKFGWISLERP 254
L + R GK G ++ E P
Sbjct: 264 LRELRGGKLGKMTFETP 280
>gi|196247656|ref|ZP_03146358.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
gi|196212440|gb|EDY07197.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
Length = 288
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 4/258 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DAR+P+S+ +P++D LG + R+++LN+ DM A W YF QG I
Sbjct: 27 IDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADMADEAVTEQWIRYFRDQGRTAI 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ AK + D K R+KG+ PR VRA IVG PNVGKS+LINRL
Sbjct: 87 AIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAG 146
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ +LA+ I + ++
Sbjct: 147 RHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNL 206
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFR 236
DVA ++ L+ IT +I D + + L G D + A
Sbjct: 207 QDVAVYALRFLSSHYPERITERYGLDRIPDDIVALFDAIGRRRGCLTGGGGIDYDKVADI 266
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R K G +S E P
Sbjct: 267 VLYDIRTEKLGRLSFETP 284
>gi|138894725|ref|YP_001125178.1| ribosomal biogenesis GTPase [Geobacillus thermodenitrificans
NG80-2]
gi|134266238|gb|ABO66433.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
Length = 286
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 4/258 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DAR+P+S+ +P++D LG + R+++LN+ DM A W YF QG I
Sbjct: 25 IDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADMADEAVTEQWIRYFRDQGRTAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ AK + D K R+KG+ PR VRA IVG PNVGKS+LINRL
Sbjct: 85 AIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAG 144
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ +LA+ I + ++
Sbjct: 145 RHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNL 204
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFR 236
DVA ++ L+ IT +I D + + L G D + A
Sbjct: 205 QDVAVYALRFLSSHYPERITERYGLDRIPDDIVALFDAIGRRRGCLTGGGGIDYDKVADI 264
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R K G +S E P
Sbjct: 265 VLYDIRTEKLGRLSFETP 282
>gi|154686021|ref|YP_001421182.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens FZB42]
gi|384265188|ref|YP_005420895.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264731|ref|ZP_10042818.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387898184|ref|YP_006328480.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|154351872|gb|ABS73951.1| YlqF [Bacillus amyloliquefaciens FZB42]
gi|380498541|emb|CCG49579.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149227|gb|EIF13164.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387172294|gb|AFJ61755.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 282
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ RI++LN+ D A W +F +QG +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKADKADAAVTAQWKDHFQEQGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L D K ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LAI I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPDRLKERYGLQEIPEDIAALFDAIGEKRGCLMGGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D + I+ D R KFG +S E P
Sbjct: 253 MVDYDKTTEVIIRDIRTEKFGRLSFETP 280
>gi|89098663|ref|ZP_01171545.1| GTPase family protein [Bacillus sp. NRRL B-14911]
gi|89086625|gb|EAR65744.1| GTPase family protein [Bacillus sp. NRRL B-14911]
Length = 281
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 144/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P++D+ + ++ R+++LN+ DM AW YF+ +G K +
Sbjct: 15 VDIIFELVDARLPQSSRNPMIDEIIQHKPRLVLLNKADMADKEATKAWIRYFSDRGIKAL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +S A+ + + + R+KG+ PRA+R IVG PNVGKS+LINRL K+
Sbjct: 75 AINSQAGSGMKDISSAAQEILKEKFDRMRAKGVKPRAIRGMIVGIPNVGKSTLINRLAKK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + DQ +KLA+ I + ++
Sbjct: 135 NIAKTGNMPGVTKAQQWIKAGKEMELLDTPGILWPKFEDQEVGLKLALSGAIKDTILNLH 194
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQA 233
D+A ++ L + P L RY ++ + + +L L G D +
Sbjct: 195 DIAIYALKFLEKHYP----GRLLERYSLEEFPEEAVEAFDKIGRLRGCLMGGGEVDYDKV 250
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ + R K G +S E P
Sbjct: 251 AELIIREIRTEKLGPLSFEHP 271
>gi|443632726|ref|ZP_21116905.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347549|gb|ELS61607.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 282
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 144/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F K+G + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEKEGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFQDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|384175346|ref|YP_005556731.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594570|gb|AEP90757.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 282
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D W +F KQG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAVVTQQWKEHFEKQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|336436401|ref|ZP_08616113.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007266|gb|EGN37291.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 282
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ + WA YF ++G V+
Sbjct: 24 IDLVIELVDARVPVSSRNPDLDELGKNKARLILLNKSDLAEERMNDVWAAYFKEKGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KLNAKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAWIGSIKDEILNTE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--MDGTCGKTFVQKLALHLFNG---DTHQAA 234
++AA L L P V L+ +Y+I+ DG + + L G DT +AA
Sbjct: 204 ELAAELTGFLVNSYPDV----LKEKYEIEESADGFENLRGIAESRHCLVKGNELDTEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR G+ G I+LE P
Sbjct: 260 KLLLDDFRNGRLGRITLETP 279
>gi|375008175|ref|YP_004981808.1| ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287024|gb|AEV18708.1| Ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 288
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 140/261 (53%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DAR+P+S+ +P++D LG + R+++LN+ DM A W YF QG +
Sbjct: 27 IDVAFELLDARLPMSSRNPMIDDILGQKPRLILLNKADMADEAVTEQWIRYFHDQGRLAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G +++ AK + D K R+KG+ PR VRA IVG PNVGKS+LINRL
Sbjct: 87 PIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPVRALIVGIPNVGKSTLINRLAG 146
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + +PGVT+ +W++ GK++E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 147 RHIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNL 206
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKID--MDGTCG--KTFVQKLALHLFNG--DTHQA 233
DVA ++ L+ T L RY +D D T ++ G D +
Sbjct: 207 QDVAVYALRFLS---THYPNRLAERYGLDDIPDDIVALFDTIGRRRGCLTSGGAVDYDKV 263
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L D R K G +S E P
Sbjct: 264 ADIVLYDIRTEKLGRLSFETP 284
>gi|357014330|ref|ZP_09079329.1| RbgA [Paenibacillus elgii B69]
Length = 294
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 9/263 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ IE+ DAR+PLS+ +P++D+ L N+ R+++LN+ D+ W +FA+QG K I
Sbjct: 24 IDMAIELLDARVPLSSRNPMIDEILQNKPRLVLLNKHDLADPEVTRRWIEFFAEQGLKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ + +K L S+ + KG+ PRA+RA IVG PNVGKS+LINR+ R
Sbjct: 84 PIDSVGGNPVKEIMQRSKELLSEKIQAQLRKGMNPRAIRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ G ++E LD+PGI+ + DQ+ ++LA I E V
Sbjct: 144 KIAATGDKPGVTKGQQWIKVGTEMELLDTPGILWPKFEDQSVGLRLAATGAIKEEILHVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL------HLFNG---DTH 231
+VA ++ L + +I D V + L +G D
Sbjct: 204 EVALFAMRYLTEHYAQSVKERFGVNEIPQDPADTDAIVALMEAVGRKRGALMSGGRVDLE 263
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ IL + R GK G ISLE P
Sbjct: 264 KASLAILRELRAGKLGRISLEAP 286
>gi|296330820|ref|ZP_06873295.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674338|ref|YP_003866010.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|338819266|sp|E0TTS5.1|RBGA_BACPZ RecName: Full=Ribosome biogenesis GTPase A
gi|296151825|gb|EFG92699.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412582|gb|ADM37701.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 282
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYALDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|402834432|ref|ZP_10883034.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
gi|402278050|gb|EJU27116.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
Length = 276
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 138/262 (52%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP ++ +P++ + +G++ R++ LN+ D+ W YF Q +
Sbjct: 8 VDVVVELLDARIPAASANPMLREIVGDKPRVVALNKRDLADEKMTKCWLEYFRAQKLPAV 67
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L L + A + SKG+ R R I+G PNVGKSSLINRL
Sbjct: 68 ALDSVTGKGMRELLALIEKAAKHRTERLVSKGVAARKARVMILGIPNVGKSSLINRLAGA 127
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +W+R G D++ LD+PGI+ + D+A +KLA + + YD+
Sbjct: 128 AKAKTADKPGVTRAKQWIRIGADVDLLDTPGILWPKFEDRAVGLKLAFTGAVNDEIYDLE 187
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDGTCGKTFVQKLALHLFNG--DTHQA 233
+VA +L+ L R LQ R+K + + +K L G D +
Sbjct: 188 NVAHLLLAALRRDHP---ERLQERFKFKEALPETTEELMEAIGRKRGCLLKGGRIDFEKV 244
Query: 234 AFRILTDFRKGKFGWISLERPP 255
+LT+FR GKFG ISL+ PP
Sbjct: 245 QHILLTEFRMGKFGKISLDVPP 266
>gi|163814004|ref|ZP_02205397.1| hypothetical protein COPEUT_00156 [Coprococcus eutactus ATCC 27759]
gi|158450698|gb|EDP27693.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus eutactus
ATCC 27759]
Length = 279
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R+++LN+ D+ A W Y++++G V
Sbjct: 24 IDIVIELVDARIPLSSKNPDIDELAKNKYRLILLNKSDLADDAVTAKWEKYYSEKGFFVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ + + + + R +G++ R +RA IVG PNVGKS+ IN ++
Sbjct: 84 KINARDGAGMKSINGIVQEACREKIERDRKRGIINRPIRAMIVGIPNVGKSTFINSYARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R GK++E LD+PGI+ + D+A ++LA I + +V
Sbjct: 144 ACTKVGNKPGVTKGKQWIRLGKNIELLDTPGILWPKFDDEAVGLRLAYIGSINDEILNVT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ---KLALHLFNG--DTHQAAF 235
D+A L++ L L RY I+ G + Q K G D +A+
Sbjct: 204 DIAVELIKFLQ---ANYCQTLTQRYNIESTGDPVQVIAQIAEKRQCIKKGGELDYDKASA 260
Query: 236 RILTDFRKGKFGWISLERP 254
++ DFR GK G I+LE P
Sbjct: 261 LLMDDFRSGKLGRITLETP 279
>gi|394993944|ref|ZP_10386683.1| GTPase YlqF [Bacillus sp. 916]
gi|429505157|ref|YP_007186341.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452855551|ref|YP_007497234.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|393805268|gb|EJD66648.1| GTPase YlqF [Bacillus sp. 916]
gi|429486747|gb|AFZ90671.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452079811|emb|CCP21569.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 282
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ RI++LN+ D A W +F +QG +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKADKADAAVTAQWKDHFQEQGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L D K ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LAI I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPDRLKERYGLQEIPEDIAALFDAIGEKRGCLMGGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D + I+ D R KFG +S E P
Sbjct: 253 MVDYDKTTEVIIRDIRTEKFGRLSFETP 280
>gi|424761234|ref|ZP_18188816.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
gi|402402218|gb|EJV34939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
Length = 314
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 55 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 114
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 115 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 174
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 175 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 234
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR +T RY + + Q + + F D ++A+ I
Sbjct: 235 DLAIYGLEFFARFYPQRLT---ERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 291
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 292 ILEIRSGKLGTYTLDR 307
>gi|30263841|ref|NP_846218.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Ames]
gi|47529266|ref|YP_020615.1| ribosomal biogenesis GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186688|ref|YP_029940.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne]
gi|65321165|ref|ZP_00394124.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
gi|170689661|ref|ZP_02880841.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|170709354|ref|ZP_02899768.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|227813254|ref|YP_002813263.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CDC 684]
gi|229600440|ref|YP_002868075.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A0248]
gi|254683455|ref|ZP_05147315.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254751310|ref|ZP_05203347.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Vollum]
gi|254759310|ref|ZP_05211335.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Australia 94]
gi|386737660|ref|YP_006210841.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|421507377|ref|ZP_15954297.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|421639593|ref|ZP_16080184.1| GTPase YlqF [Bacillus anthracis str. BF1]
gi|30258485|gb|AAP27704.1| GTPase family protein [Bacillus anthracis str. Ames]
gi|47504414|gb|AAT33090.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180615|gb|AAT55991.1| GTPase family protein [Bacillus anthracis str. Sterne]
gi|170125728|gb|EDS94641.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|170666385|gb|EDT17168.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|227002777|gb|ACP12520.1| GTPase family protein [Bacillus anthracis str. CDC 684]
gi|229264848|gb|ACQ46485.1| GTPase family protein [Bacillus anthracis str. A0248]
gi|384387512|gb|AFH85173.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|401822511|gb|EJT21661.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|403393258|gb|EJY90503.1| GTPase YlqF [Bacillus anthracis str. BF1]
Length = 296
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PR +RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ + + P L+ RY + D+ + F + K L G D +
Sbjct: 204 DVAVYALRFMEKHYP----ERLKERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKT 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R GK G ++ E P
Sbjct: 260 SELVLRELRGGKLGKMTFETP 280
>gi|452914121|ref|ZP_21962748.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
gi|452116541|gb|EME06936.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
Length = 282
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLKEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|227518839|ref|ZP_03948888.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227553456|ref|ZP_03983505.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229545736|ref|ZP_04434461.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|229549925|ref|ZP_04438650.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|293382907|ref|ZP_06628825.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|293389604|ref|ZP_06634061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|307270932|ref|ZP_07552215.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|307274872|ref|ZP_07556035.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|307277979|ref|ZP_07559063.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|307291910|ref|ZP_07571779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|312899501|ref|ZP_07758831.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|312907623|ref|ZP_07766614.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|312910240|ref|ZP_07769087.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|312951584|ref|ZP_07770480.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|384513330|ref|YP_005708423.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|422685902|ref|ZP_16744115.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|422692935|ref|ZP_16750950.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|422695067|ref|ZP_16753055.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|422699129|ref|ZP_16757002.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|422701845|ref|ZP_16759685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|422704561|ref|ZP_16762371.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|422706577|ref|ZP_16764275.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|422708558|ref|ZP_16766086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|422714534|ref|ZP_16771260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|422715792|ref|ZP_16772508.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|422719008|ref|ZP_16775659.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|422722435|ref|ZP_16778985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|422727138|ref|ZP_16783581.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|422728820|ref|ZP_16785226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|422733485|ref|ZP_16789787.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|422734226|ref|ZP_16790520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|422739090|ref|ZP_16794273.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|422869271|ref|ZP_16915791.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|424673132|ref|ZP_18110075.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|424676678|ref|ZP_18113549.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|424681506|ref|ZP_18118293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|424683696|ref|ZP_18120446.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|424686400|ref|ZP_18123068.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|424690328|ref|ZP_18126863.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|424695421|ref|ZP_18131804.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|424696840|ref|ZP_18133181.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|424699774|ref|ZP_18135985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|424703213|ref|ZP_18139347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|424707290|ref|ZP_18143274.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|424717050|ref|ZP_18146348.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|424720628|ref|ZP_18149729.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|424724176|ref|ZP_18153125.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|424733767|ref|ZP_18162322.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|424743934|ref|ZP_18172239.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|424750558|ref|ZP_18178622.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|430360682|ref|ZP_19426403.1| GTP-binding protein [Enterococcus faecalis OG1X]
gi|227073710|gb|EEI11673.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227177413|gb|EEI58385.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229304938|gb|EEN70934.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|229309186|gb|EEN75173.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|291079572|gb|EFE16936.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|291081221|gb|EFE18184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|306496908|gb|EFM66456.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|306505376|gb|EFM74562.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|306508320|gb|EFM77427.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|306512430|gb|EFM81079.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|310626651|gb|EFQ09934.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|310630550|gb|EFQ13833.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|311289513|gb|EFQ68069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|311293371|gb|EFQ71927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|315027180|gb|EFT39112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|315029297|gb|EFT41229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|315034057|gb|EFT45989.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|315037066|gb|EFT48998.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|315145133|gb|EFT89149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|315147350|gb|EFT91366.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|315150450|gb|EFT94466.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|315152394|gb|EFT96410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|315155666|gb|EFT99682.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|315158163|gb|EFU02180.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|315160533|gb|EFU04550.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|315164102|gb|EFU08119.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|315168948|gb|EFU12965.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|315169818|gb|EFU13835.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|315172217|gb|EFU16234.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|315575778|gb|EFU87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|315580430|gb|EFU92621.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|327535219|gb|AEA94053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|329571608|gb|EGG53289.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|402351213|gb|EJU86105.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|402352942|gb|EJU87778.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|402356298|gb|EJU91032.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|402364455|gb|EJU98891.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|402364694|gb|EJU99129.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|402367254|gb|EJV01595.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|402368359|gb|EJV02675.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|402375703|gb|EJV09683.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|402377169|gb|EJV11080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|402384888|gb|EJV18429.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|402385218|gb|EJV18758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|402386398|gb|EJV19904.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|402391097|gb|EJV24413.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|402393099|gb|EJV26329.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|402395660|gb|EJV28747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|402399610|gb|EJV32476.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|402406536|gb|EJV39086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|429512797|gb|ELA02394.1| GTP-binding protein [Enterococcus faecalis OG1X]
Length = 292
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 33 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 93 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 153 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR +T RY + + Q + + F D ++A+ I
Sbjct: 213 DLAIYGLEFFARFYPQRLT---ERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 269
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 270 ILEIRSGKLGTYTLDR 285
>gi|29376208|ref|NP_815362.1| GTPase [Enterococcus faecalis V583]
gi|255972708|ref|ZP_05423294.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255975760|ref|ZP_05426346.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256619149|ref|ZP_05475995.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256853211|ref|ZP_05558581.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256959065|ref|ZP_05563236.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256961842|ref|ZP_05566013.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|257079096|ref|ZP_05573457.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|257082465|ref|ZP_05576826.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|257085097|ref|ZP_05579458.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|257086658|ref|ZP_05581019.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257416179|ref|ZP_05593173.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257419381|ref|ZP_05596375.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257422525|ref|ZP_05599515.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294781633|ref|ZP_06746969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|300861139|ref|ZP_07107226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|384518682|ref|YP_005705987.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397699964|ref|YP_006537752.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|421512269|ref|ZP_15959079.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|428767091|ref|YP_007153202.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|430370587|ref|ZP_19429112.1| GTP-binding protein [Enterococcus faecalis M7]
gi|29343671|gb|AAO81432.1| GTPase of unknown function [Enterococcus faecalis V583]
gi|255963726|gb|EET96202.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255968632|gb|EET99254.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256598676|gb|EEU17852.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256711670|gb|EEU26708.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256949561|gb|EEU66193.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256952338|gb|EEU68970.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|256987126|gb|EEU74428.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|256990495|gb|EEU77797.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|256993127|gb|EEU80429.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|256994688|gb|EEU81990.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257158007|gb|EEU87967.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257161209|gb|EEU91169.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257164349|gb|EEU94309.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294451329|gb|EFG19795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|295113050|emb|CBL31687.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
7L76]
gi|300850178|gb|EFK77928.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|323480815|gb|ADX80254.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397336603|gb|AFO44275.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|401674613|gb|EJS80961.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|427185264|emb|CCO72488.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|429515351|gb|ELA04867.1| GTP-binding protein [Enterococcus faecalis M7]
Length = 283
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 24 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 84 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR +T RY + + Q + + F D ++A+ I
Sbjct: 204 DLAIYGLEFFARFYPQRLT---ERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 260
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 261 ILEIRSGKLGTYTLDR 276
>gi|307289193|ref|ZP_07569149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
gi|306499902|gb|EFM69263.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
Length = 292
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 33 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 93 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 153 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR +T RY + + Q + + F D ++A+ I
Sbjct: 213 DLAIYGLEFFARFYPQRLT---ERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 269
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 270 ILEIRSGKLGTYTLDR 285
>gi|427405689|ref|ZP_18895894.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
gi|425708530|gb|EKU71569.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
Length = 302
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 138/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DARIP+S+ +P++ + + R R++VLN+ D+ AW YFA Q +
Sbjct: 33 VDMVVELLDARIPMSSANPVLREIVAGRPRLVVLNKSDLAEPTATRAWVQYFASQDIVAV 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + + LA K G PRA R I+G PNVGKSSLINRL
Sbjct: 93 PVDAVKGRGIKELVQEIQRLAVPRTEKLAKHGAKPRAARCMILGIPNVGKSSLINRLSGG 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + D AA++LA I + Y
Sbjct: 153 ARTKVENRPGVTRAKQWIRIGAQLELLDMPGILWPKFEDAQAALRLAFTGAISDTVY--- 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
DV +++Q+L + T AL RY++ G ++++ L G D +A
Sbjct: 210 DVGGVVLQLLRALRTDYPAALCQRYELSDAIPDGIELLEEIGRRRGCLVRGGRIDYEKAE 269
Query: 235 FRILTDFRKGKFGWISLERPP 255
ILTDFR G+ G ++L+ P
Sbjct: 270 QMILTDFRSGRLGRVTLDPLP 290
>gi|16078668|ref|NP_389487.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309480|ref|ZP_03591327.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313805|ref|ZP_03595610.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318729|ref|ZP_03600023.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323000|ref|ZP_03604294.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|350265918|ref|YP_004877225.1| hypothetical protein GYO_1956 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386758328|ref|YP_006231544.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402775850|ref|YP_006629794.1| ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|430758972|ref|YP_007209693.1| hypothetical protein A7A1_3480 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81555913|sp|O31743.1|RBGA_BACSU RecName: Full=Ribosome biogenesis GTPase A
gi|33358156|pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
gi|2633977|emb|CAB13478.1| ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|349598805|gb|AEP86593.1| YlqF [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|384931610|gb|AFI28288.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402481032|gb|AFQ57541.1| Ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|407959011|dbj|BAM52251.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|407964588|dbj|BAM57827.1| ribosomal biogenesis GTPase [Bacillus subtilis BEST7003]
gi|430023492|gb|AGA24098.1| Hypothetical protein YlqF [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 282
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|375362249|ref|YP_005130288.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731725|ref|ZP_16170848.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347024|ref|YP_007445655.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
gi|371568243|emb|CCF05093.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073938|gb|EKE46928.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850782|gb|AGF27774.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
Length = 282
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ RI++LN+ D A W +F +QG +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKADKADAAVTAQWKDHFQEQGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L D K ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LAI I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPDRLKERYGLQEIPEDIAALFDAIGEKRGCLMGGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D + I+ D R KFG +S E P
Sbjct: 253 MVDYDKTTEVIIRDIRTEKFGRLSFEAP 280
>gi|197303273|ref|ZP_03168314.1| hypothetical protein RUMLAC_01996 [Ruminococcus lactaris ATCC
29176]
gi|197297699|gb|EDY32258.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus lactaris
ATCC 29176]
Length = 282
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ + W YF ++G +
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKADLAEDRRNDEWLEYFKEKGYSAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSRKGGGIKSIQNVIQEACKEKMERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQA +KLA I +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQAVGLKLAFIGSIKDEILQTE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A+ LV + R P V L+ +Y I+ + ++K+A L G DT +A
Sbjct: 204 ELASELVDFINRSYPGV----LEEKYAIEHSDDKFEV-LEKIAQSRHCLVRGNEFDTEKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L DFR G+ G I+LE P
Sbjct: 259 AAILLDDFRNGRLGRITLEVP 279
>gi|404418476|ref|ZP_11000243.1| GTPase YlqF [Staphylococcus arlettae CVD059]
gi|403489069|gb|EJY94647.1| GTPase YlqF [Staphylococcus arlettae CVD059]
Length = 290
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +YF+ QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIQQKPRVIILNKKDMANLKELEKWQSYFSAQGNFPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ + A D K R KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKGLKQVEQAAIQATEDKFAKEREKGLKPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK L+ LD+PGI+ + DQ KL+I I + +
Sbjct: 144 AIAKTGNTPGVTKQQQWIKIGKSLQLLDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA ++ L + G L+ Y I++
Sbjct: 204 EVAIYGLEFLKQHDYEG---LKKHYNIEV 229
>gi|407474073|ref|YP_006788473.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
gi|407050581|gb|AFS78626.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
Length = 281
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 143/260 (55%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P++D+ + N+ R++++N+ D+ S W YF + V+
Sbjct: 24 VDIVIELLDARIPISSKNPMIDEIISNKPRLVIMNKSDLSSEKGNKLWKEYFESKNIPVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F G K++ + + D KR+ KG+ +VRA IVG PNVGKS+LIN L R
Sbjct: 84 FITATNNNGIDKVTNEVQKVLKDKMQKRKEKGIKSTSVRAMIVGIPNVGKSTLINSLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +W++ D+E LD+PGI+ + D+ A+ LA I + D
Sbjct: 144 KGAKTGNRPGITTSKQWIKLKGDIELLDTPGILWPKFEDKRVALNLAFTGAIKDEILDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+A LV+ L I T + ++ RY + ++ + ++++A + G D + +
Sbjct: 204 TLALKLVEKLCAIDT---SLIEGRYDVQVNDSTPLEVMEEIAEKRGCIIKGGEIDYTRVS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR+G G ++L+ P
Sbjct: 261 GILLDEFRRGIMGKVTLDFP 280
>gi|342215090|ref|ZP_08707755.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589739|gb|EGS33002.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
Length = 297
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 147/259 (56%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G++ +++LN+ D+ + W +F +G I
Sbjct: 30 VDVVIELLDARIPRSSANPVIRELIGDKPHVVILNKCDLANPKATKEWIEFFKNEGIHAI 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G +L + ++LA + + KG+ R VR I+G PNVGKS+LIN+L
Sbjct: 90 AIDSKNGKGNKQLVKTVESLAQPIIDRWLKKGIKGRTVRTMILGIPNVGKSTLINKLAGS 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PG TR +WV+ GK+LE LD+PG++ + DQ AA +LA+ G S DV
Sbjct: 150 AATRTANKPGHTRGQQWVKVGKNLELLDTPGVLWPKFEDQRAAARLAMT---GAISDDVY 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ +++ Q+LA + T L RYK+ + + T T ++ + L +G D +
Sbjct: 207 DLDSVIKQLLAYLEEHEPTLLHERYKLTEEERTSVDTMLEAIGRRRGCLVSGGVVDYDKV 266
Query: 234 AFRILTDFRKGKFGWISLE 252
ILTD+R K G+I+ +
Sbjct: 267 RRVILTDYRNNKLGYITFD 285
>gi|256965039|ref|ZP_05569210.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|257089970|ref|ZP_05584331.1| GTP-binding protein [Enterococcus faecalis CH188]
gi|256955535|gb|EEU72167.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|256998782|gb|EEU85302.1| GTP-binding protein [Enterococcus faecalis CH188]
Length = 283
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 24 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 84 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR L RY + + Q + + F D ++A+ I
Sbjct: 204 DLAIYGLEFFARFYP---QRLMERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 260
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 261 ILEIRSGKLGTYTLDR 276
>gi|449094297|ref|YP_007426788.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
gi|449028212|gb|AGE63451.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
Length = 282
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F KQG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEKQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ ++ + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASREILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPERLKERYGLEEIPEDIAELFDAIGEKRGCLMSGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
+ + I+ D R KFG +S E+P
Sbjct: 253 LINYDKTTEVIIRDIRTEKFGRLSFEQP 280
>gi|47570717|ref|ZP_00241305.1| GTPase of unknown function [Bacillus cereus G9241]
gi|47552615|gb|EAL11078.1| GTPase of unknown function [Bacillus cereus G9241]
Length = 225
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 114/183 (62%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM W YF ++G I
Sbjct: 24 IDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDHLTKQWIAYFKEKGHMAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ K L + K +KG+ PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 SINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W++ GK++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQ 203
Query: 181 DVA 183
DVA
Sbjct: 204 DVA 206
>gi|307273137|ref|ZP_07554383.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|312903394|ref|ZP_07762574.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|422689281|ref|ZP_16747393.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
gi|306510122|gb|EFM79146.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|310633270|gb|EFQ16553.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|315577620|gb|EFU89811.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
Length = 292
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 33 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 93 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 153 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A ++ AR L RY + + Q + + F D ++A+ I
Sbjct: 213 DLAIYGLEFFARFYP---QRLMERYGLTEEELFLPAPEQLMLISQKRGFRDDYNRASEMI 269
Query: 238 LTDFRKGKFGWISLER 253
+ + R GK G +L+R
Sbjct: 270 ILEIRSGKLGTYTLDR 285
>gi|398310701|ref|ZP_10514175.1| GTPase YlqF [Bacillus mojavensis RO-H-1]
Length = 282
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKDILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>gi|403383360|ref|ZP_10925417.1| hypothetical protein KJC30_01635 [Kurthia sp. JC30]
Length = 284
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++D + + R+L+LN+ DM A W YFA +G K +
Sbjct: 24 VDIVFELIDARLPMSSRNPMLDDIIHQKNRLLILNKADMADEAQTKKWINYFASKGHKAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G ++++ A+ + ++ + R KGL RA+RA IVG PNVGKS++INRL K+
Sbjct: 84 AVNSLDSKGLKRVTKAAEEVLAEKWERMRKKGLKTRAIRAMIVGIPNVGKSTMINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W++ GK+LE LD+PGI+ + DQ KLA+ I ++ ++
Sbjct: 144 NVARTGNMPGVTRSQQWIKVGKELELLDTPGILWPKFEDQNVGYKLAVTGAIKDQIMNMD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
D+A + L L RY+ID
Sbjct: 204 DLAIFGLNFL---EVYYPERLHERYQID 228
>gi|121533788|ref|ZP_01665615.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
gi|121307779|gb|EAX48694.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
Length = 287
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 135/262 (51%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P++ + +GN+ R++ LN+ D+ W + +QG +
Sbjct: 24 VDVVIELLDARIPLSSANPVIHELVGNKPRVIALNKADLAEPQWTERWIAEYRRQGLAAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
G G L + +KG+ R VRA I+G PNVGKSSLINRLL
Sbjct: 84 PLEAVSGKGVKTLIVQVETAVRPKLKALEAKGIQGRTVRAIILGIPNVGKSSLINRLLGA 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +W++ GK+LE LD+PG++ + DQ A KLAI I E YDV
Sbjct: 144 AVVRTGDRPGVTRGQQWIKIGKNLELLDTPGVLWPKFDDQEVAFKLAITGAIHEDVYDVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI------DMDGTCGKTFVQKLALHLFNGDTHQAA 234
VA L+ ML T L R+K+ D ++ L H+
Sbjct: 204 AVATKLLHMLRSCYT---ERLVERFKLSPPLPEDAAALLDLIGSKRGCLRAGGIVDHEKV 260
Query: 235 FR-ILTDFRKGKFGWISLERPP 255
R ILT+FR GK G +L+ PP
Sbjct: 261 RRIILTEFRTGKLGPFTLDYPP 282
>gi|373494759|ref|ZP_09585358.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
gi|371967803|gb|EHO85271.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
Length = 280
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 141/260 (54%), Gaps = 15/260 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEV DARIP+S+ +P++D+ ++RI++LN+ D+ + W G KV+
Sbjct: 27 VDIVIEVIDARIPVSSRNPVIDELTAGKQRIIILNKSDLADGNETKRWMEKLGTDGIKVM 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G +L L + D+N R K + +R IVG PNVGKSSLINRL +
Sbjct: 87 TLDSMHGVGIKELLNLMTKIQDDINKDRVRK----KNLRLMIVGVPNVGKSSLINRLTGK 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+ ++ LD+PGI+ + D++ IKLA C I + D+
Sbjct: 143 KSAKTGDKPGVTKGKQWLTLSNGMQLLDTPGILWPKFEDESVGIKLAFCGSIKDEILDLE 202
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLALH----LFNG--DTHQA 233
+A L+++L P + L NRYK+D G + +AL+ L G D +
Sbjct: 203 TLALRLIELLQDEYPKL----LANRYKLDEISDEGLVNMDNIALNRGFILSKGRIDYSRC 258
Query: 234 AFRILTDFRKGKFGWISLER 253
A +L +FR + G I+LER
Sbjct: 259 AKTVLDEFRSAQIGRITLER 278
>gi|238926778|ref|ZP_04658538.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|238885310|gb|EEQ48948.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
Length = 302
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 135/262 (51%), Gaps = 9/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + +G + R++VLN+ D+ AW Y+A +G +
Sbjct: 40 VDVVVELLDARIPMSSANPVLREMVGGKPRLIVLNKADLADENVTRAWVKYYAAEGLSAV 99
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT +L + A K G PRA R I+G PNVGKSSLINRL
Sbjct: 100 PVDAVKGKGTKELVQAIARCAKPKTDKLVQHGAKPRAARCMILGIPNVGKSSLINRLSGG 159
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + DQ AA+ LA I + YDV
Sbjct: 160 TKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDQQAALHLAFTGAINDNVYDVG 219
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L +L RY++D G + + L G D +A
Sbjct: 220 SVVLLLLNRLREDSP---QSLCTRYRLDEPLPEGANLLDAIGRKRGCLRAGGKIDYEKAE 276
Query: 235 FRILTDFRKGKFGWISLERPPR 256
ILTDFR G+ G ISL+ P
Sbjct: 277 QVILTDFRSGRLGRISLDAVPH 298
>gi|308173567|ref|YP_003920272.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|384159412|ref|YP_005541485.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|384164153|ref|YP_005545532.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|384168459|ref|YP_005549837.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
gi|307606431|emb|CBI42802.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|328553500|gb|AEB23992.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|328911708|gb|AEB63304.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|341827738|gb|AEK88989.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
Length = 282
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L ++ RI++LN+ D A W +F +QG +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEEILKDKPRIMLLNKADKADAAVTAQWKDHFQEQGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L D K ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LAI I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPDRLKERYGLQEIPEDIAALFDAIGEKRGCLMGGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D + I+ D R KFG +S E P
Sbjct: 253 LVDYDKTTEVIIRDIRTEKFGRLSFETP 280
>gi|296133540|ref|YP_003640787.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
gi|296032118|gb|ADG82886.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
Length = 286
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP S+ +P + + L + R++ LN+ D+ W F + G +
Sbjct: 28 VDIVIELVDARIPSSSRNPDLQEILQGKPRVVALNKADLADQNLTERWTQVFTRDGCNAV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G KL L K V K +KG PR +R I+G PNVGKSSLIN+L +
Sbjct: 88 AINSTTGQGVEKLVALTKKAGEPVMQKLAAKGRKPRPIRVMILGIPNVGKSSLINKLAGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G+D+E LD+PGI+ + D KLA+ I E +V
Sbjct: 148 GATRTGDRPGVTRGKQWIRVGRDMELLDTPGILWPKFDDPEVGFKLAVTGAIKE---EVI 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-------LHLFNG--DTH 231
+V +++++L + + L+ RYK+D + + V+ LA L + G D
Sbjct: 205 NVEQVVLKLLKYLKDMHPEKLKARYKLD---SLSEKPVEILADIGARRGLLIPGGQVDME 261
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+AA IL +FR GK G +L+ P
Sbjct: 262 KAARVILAEFRTGKLGRFTLDLP 284
>gi|452974492|gb|EME74312.1| GTPase YlqF [Bacillus sonorensis L12]
Length = 282
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A N W +F G +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADSAVTNEWKKHFEADGIPSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L + K ++KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIRALIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +WV+ GK+LE LD+PGI+ + D+ +KLA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWVKVGKELELLDTPGILWPKFEDELVGLKLAATGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +++ GK +A N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKKRYDLAEIPEEIVELFDEIGKKRGCLMAGGEINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGPLSFEKP 280
>gi|255657929|ref|ZP_05403338.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
gi|260850122|gb|EEX70129.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 138/264 (52%), Gaps = 12/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + + + R++ LN+ D+ A W YF QG +
Sbjct: 33 VDVVIELLDARIPASSANPMLAEIIKGKPRLIALNKSDLADAASTKRWLAYFRAQGIPAV 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L A+ LA + G PRA R I+G PNVGKSSLINRL
Sbjct: 93 AIDSVKGRGMKQLVAKAEELARPKTDRFVKAGGRPRAARCMILGIPNVGKSSLINRLAGA 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
AA +PGVTR +W++ G L+ LD+PGI+ + DQ +KLA I + YD
Sbjct: 153 VKAKAADKPGVTRAKQWIKIGAALDLLDTPGILWPKFEDQTVGLKLAFTGAINDEIYDRE 212
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK----IDMDGTCGKTFVQKLALHLFNG---DTHQ 232
V A+L+ ++ R P LQ R+K + DG + + L G D +
Sbjct: 213 QVTALLLSVMRRDYP----ERLQERFKFKGEMPEDGLALLEAIGRKRGCLVKGGVVDLEK 268
Query: 233 AAFRILTDFRKGKFGWISLERPPR 256
A +LT+FR GK G ++L+ P+
Sbjct: 269 AQNIVLTEFRSGKLGLVTLDEVPQ 292
>gi|321315371|ref|YP_004207658.1| GTPase YlqF [Bacillus subtilis BSn5]
gi|320021645|gb|ADV96631.1| GTPase YlqF [Bacillus subtilis BSn5]
Length = 282
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + G + + LF+
Sbjct: 204 DVAVF-----------GLRFLEEHYPERLKERYGLEEIPEDIAELFDAIGEKRGCLMSGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
+ + I+ D R KFG +S E+P
Sbjct: 253 LINYDKTTEVIIRDIRTEKFGRLSFEQP 280
>gi|295094902|emb|CBK83993.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus sp.
ART55/1]
Length = 282
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 137/262 (52%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ D+RIP S+ +P +D+ N+ R+++LN+ D+ A W Y+ + V
Sbjct: 24 IDIVIELVDSRIPFSSKNPDIDELAKNKYRLILLNKSDLADDAVTTKWENYYKNKDFAVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ + + + + R +G++ R +RA IVG PNVGKS+ IN ++
Sbjct: 84 KINARDGMGMKSINNIVQEACKEKIERDRKRGIINRPIRAMIVGIPNVGKSTFINSYARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R GK++E LD+PGI+ + D+A ++LA I + +
Sbjct: 144 ACTKVGNKPGVTKGKQWIRLGKNIELLDTPGILWPKFDDEAVGLRLAFIGSINDEILSIT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTHQ 232
D+A L++ L L RY I+ + G K K L D +
Sbjct: 204 DIAVELIKFLQ---ANYCNTLVQRYNIESVDDPVQMLTGIAEKRQCIKKGGEL---DYDK 257
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA ++ DFR GK G I+LE P
Sbjct: 258 AAALLIDDFRSGKLGRITLETP 279
>gi|365157121|ref|ZP_09353402.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
gi|363625855|gb|EHL76866.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
Length = 284
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 139/259 (53%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++D+ + + RI++LN+ D+ W YF + I
Sbjct: 24 IDIVFELVDARLPLSSRNPMIDEIIQQKPRIILLNKADLADSDWTKEWIAYFKSRQLPAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ K L + + R++G+ PRAVRA IVG PNVGKS+LINRL KR
Sbjct: 84 AINSQEGQGLSQIMNKTKELLKEKFERMRARGIKPRAVRAMIVGIPNVGKSTLINRLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ K+LE LD+PGI+ + D+ KLA+ I + ++
Sbjct: 144 NIAKTGNTPGVTKAQQWIKVEKELELLDTPGILWPKFEDEEVGYKLALTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAAF 235
DVAA ++ L +T RY+ID + F + KL L G D +
Sbjct: 204 DVAAYGLRFLKEHYPERLT---ERYQIDPHLEIIEMFDAIGKLRGCLLKGGEIDYDKTTD 260
Query: 236 RILTDFRKGKFGWISLERP 254
I+ D R K G ++ + P
Sbjct: 261 IIIRDIRSEKLGKLTFDFP 279
>gi|153813998|ref|ZP_01966666.1| hypothetical protein RUMTOR_00205 [Ruminococcus torques ATCC 27756]
gi|317502412|ref|ZP_07960577.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088005|ref|ZP_08336928.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336439693|ref|ZP_08619300.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848394|gb|EDK25312.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
ATCC 27756]
gi|316896222|gb|EFV18328.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409316|gb|EGG88765.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336015591|gb|EGN45405.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 280
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 139/259 (53%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ + W YF +G +
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKSDLAEERINDEWIDYFKDRGYSAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGMNQIRSAIQEACKEKTERDRKRGILNRPVRAMVVGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ KLA I +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQEVGKKLAFIGSIKDEILQTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNG---DTHQAAF 235
+++ L++ L G+ L+ +Y I+ D T + K + G DT +AA
Sbjct: 204 ELSTELIKFL-NAEYAGV--LEEKYSIEHLEDVYECLTEIAKSRHCIVRGSELDTEKAAA 260
Query: 236 RILTDFRKGKFGWISLERP 254
+L DFR GK G ISLERP
Sbjct: 261 ILLDDFRSGKLGRISLERP 279
>gi|56964050|ref|YP_175781.1| GTPase [Bacillus clausii KSM-K16]
gi|56910293|dbj|BAD64820.1| GTPase [Bacillus clausii KSM-K16]
Length = 288
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 141/262 (53%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P S+ +PL+D+ + R+++LN+ D+ A+ W +F + G +V+
Sbjct: 25 IDVVIELVDARLPQSSRNPLIDELAQQKPRLMLLNKADLADPAETERWRAFFKRTGAEVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ K LAS + K KG+ PR +RA I+G PNVGKS+LINRL+ +
Sbjct: 85 AINAQTGAGVKNIAPACKTLASALYQKWEQKGMKPRPLRAIILGIPNVGKSTLINRLVNK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W++ ++LE LD+PGI+ + DQ ++LA I + D
Sbjct: 145 RQAKVGDRPGVTKQQQWIKVKQELELLDTPGILWPKFDDQEVGLRLAATGAIKDELLDYG 204
Query: 181 DV-AAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTH 231
DV A L + A P + L+ RY I+ + A+ G D
Sbjct: 205 DVAAYALRYLAAEYPDL----LEARYGIERNSEEDDVVPLFEAIGKKRGCIVRGGLVDFD 260
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ A IL + R G G ++LE+
Sbjct: 261 KTAELILRELRSGTIGKVTLEK 282
>gi|336392851|ref|ZP_08574250.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 285
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 143/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+PL++ +P++DQ + + R+++LN+ D+ A AW YF + G I
Sbjct: 25 VDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKADLADPALNAAWINYFKQHGLPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A+ + +D +++++G+ + +RA +G PNVGKS+++NRL+KR
Sbjct: 85 SIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKPIRAICIGIPNVGKSTILNRLVKR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK LE LD+PGI+ + D KLA+ I + Y
Sbjct: 145 NVAITGNHPGVTKKQQWLKAGKSLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA + LA LQ RY++ D + T ++ A D +A+ R+
Sbjct: 205 DVA---LYALAFFKQYFPERLQKRYRLTEADFELTDPDLLLKITADLGLKDDYERASERL 261
Query: 238 LTDFRKGKFGWISLER 253
+ D RKGK G +L++
Sbjct: 262 ILDCRKGKLGRYTLDQ 277
>gi|302386483|ref|YP_003822305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
gi|302197111|gb|ADL04682.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
Length = 280
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 143/259 (55%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ + RI++LN+ D+ + W +YF QG V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGAGKARIVLLNKSDLADERCNSVWQSYFETQGCHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +++ + + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 84 KVNSRNGAGLKQINGVVQEACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W+R K LE LD+PGI+ R DQ I+LA+ + + +
Sbjct: 144 ACAKTGNRPGVTKGNQWIRLNKSLELLDTPGILWPRFEDQQVGIRLALIGSVNDEILNKD 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKID-MDGTCGKTFVQKLALHLFNG---DTHQAAF 235
++A L++ L + P V L +RY I+ ++ V ++ L G D +A+
Sbjct: 204 ELAMELIRFLTKKYPQV----LSDRYGIESLNELDALKQVARVRACLAKGGELDLMKASN 259
Query: 236 RILTDFRKGKFGWISLERP 254
++ DFR GK G I+LE P
Sbjct: 260 LLIDDFRSGKLGRITLEFP 278
>gi|325570948|ref|ZP_08146567.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
gi|325156274|gb|EGC68458.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
Length = 309
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++DQ L + R++++N+ D+ W YF QG +
Sbjct: 45 VDIVFELVDARLPISSRNPMLDQLLQQKPRLILINKADLADPVQTKKWEHYFQAQGYLAL 104
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G + AK + + + +++GL PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 105 AINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPRAIRAMVIGIPNVGKSTLMNRLVGK 164
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+RFG DLE LD+PGI+ + D KLA+ I ++ +
Sbjct: 165 KIAQTGNKPGVTKGQQWLRFGTDLELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLD 224
Query: 181 DVAAILVQMLARIPTVGITALQNRY--KIDMDGTCGKTFVQKLALHLFNGDTH-QAAFRI 237
D+A + AR I NRY K + + + K+ D + + + +
Sbjct: 225 DIALYGLDFFARYYPERIA---NRYQLKAEEEALLAPDLLMKITEKRGYKDNYDRGSELV 281
Query: 238 LTDFRKGKFGWISLER 253
+ D R+GK G +L+R
Sbjct: 282 VFDIRQGKLGRYTLDR 297
>gi|297584020|ref|YP_003699800.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
gi|297142477|gb|ADH99234.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
Length = 285
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 143/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEV DAR PL++ +PL+D+ ++ R+++LN+ D+ WA YF KQG V+
Sbjct: 24 IDVVIEVCDARAPLASRNPLVDEMTRSKPRLMLLNKSDLADPEMNRKWADYFEKQGDAVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G + LA + K K + PR +RA I+G PN GKS++INRL +
Sbjct: 84 IVDAQKGKGIKDIPGKVNELAKPLYEKWARKKVNPRPIRALIIGIPNAGKSTVINRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ +PGVT+ +W++ + L+ LD+PGI+ + D LA+ I E +D
Sbjct: 144 RITKIGDKPGVTKAQQWIKVDRQLDLLDTPGILWPKFEDPHVGQMLALTGAIKEEIFDYE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
+ A L++ L++ P + L++RY+I ++ G F + K L +G D +
Sbjct: 204 ESAVYLLRFLSQSYPEL----LKSRYQIEEVPEEVGDLFDLIGKRRGILISGGRIDYERV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ + DFR G FG I+LE P
Sbjct: 260 SELVFRDFRSGHFGRITLEFP 280
>gi|257867804|ref|ZP_05647457.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257874131|ref|ZP_05653784.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257876696|ref|ZP_05656349.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|420263140|ref|ZP_14765779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
gi|257801887|gb|EEV30790.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257808295|gb|EEV37117.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257810862|gb|EEV39682.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|394769774|gb|EJF49608.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
Length = 288
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++DQ L + R++++N+ D+ W YF QG +
Sbjct: 24 VDIVFELVDARLPISSRNPMLDQLLQQKPRLILINKADLADPVQTKKWEHYFQAQGYLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G + AK + + + +++GL PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPRAIRAMVIGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+RFG DLE LD+PGI+ + D KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRFGTDLELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRY--KIDMDGTCGKTFVQKLALHLFNGDTH-QAAFRI 237
D+A + AR I NRY K + + + K+ D + + + +
Sbjct: 204 DIALYGLDFFARYYPERIA---NRYQLKAEEEALLAPDLLMKITEKRGYKDNYDRGSELV 260
Query: 238 LTDFRKGKFGWISLER 253
+ D R+GK G +L+R
Sbjct: 261 VFDIRQGKLGRYTLDR 276
>gi|397905566|ref|ZP_10506420.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Caloramator australicus RC3]
gi|397161400|emb|CCJ33754.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Caloramator australicus RC3]
Length = 290
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P +D + N+ RI++LN+ ++ W Y+ G +
Sbjct: 24 IDVVLELLDARIPISSKNPDVDSIIKNKPRIILLNKSELADPLITKEWIAYYKNNGISAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G K+ L K + D + + KG++ R +RA ++G PNVGKS+ IN++ K+
Sbjct: 84 DIDCISGKNINKIYPLIKEILKDKIERTQQKGIIGRPIRALVLGIPNVGKSTFINKIAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W++ K+ E LD+PGI+ + D+ A+ LA I E ++
Sbjct: 144 SSAQTGDRPGVTKNKQWIKVNKEFELLDTPGILWPKFDDEKVALHLAYVKSIKE---EIL 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNG---DTHQAAF 235
DV + ++ L I + L+ RYK+++ D T + K + +G D ++ A
Sbjct: 201 DVVELSIKFLNEIKQIAPKVLEERYKVNVIDDVYAMLTEIGKKRGCVVSGGEVDLYRTAN 260
Query: 236 RILTDFRKGKFGWISLERP 254
IL DFR K G ISLE P
Sbjct: 261 IILEDFRDAKLGRISLELP 279
>gi|259046714|ref|ZP_05737115.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
gi|259036610|gb|EEW37865.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
Length = 286
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++++ G +K++++LN+ D+ + W YF QG KV+
Sbjct: 25 VDVVIEMVDARIPESSRNPIIEEIKGQKKQLILLNKVDLADPSQTKRWNDYFTSQGIKVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ K L + V K KG+ PR +R ++G PNVGKS+ INR++ +
Sbjct: 85 TTEAKDGKGIKQVKAAIKELMAPVFEKNLEKGIRPRPIRLMVLGIPNVGKSTFINRMINK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A RPGVT+ +W++ G D E LD+PGI+ + + KLA+ I + +
Sbjct: 145 NQAETANRPGVTKGQRWLKIGNDFELLDTPGILWPKFESEEVGNKLALTGAIKDALLHMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAF 235
D+A L Q P L+ Y++ +D + V L L F D +A+
Sbjct: 205 DIALFALSQFKLDYPEY----LKKAYRL-IDSDLELSNVDLLMLITKNLGFKEDYEKASE 259
Query: 236 RILTDFRKGKFGWISLERPP 255
RI+ D R GK G +L++ P
Sbjct: 260 RIVFDIRSGKLGRYTLDQAP 279
>gi|357038748|ref|ZP_09100545.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
gi|355359540|gb|EHG07302.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
Length = 282
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 141/262 (53%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P ++ L ++ R++VLN+ D+ W YF +G +
Sbjct: 24 VDVVIELLDARIPASSRNPDINAILKDKPRLVVLNKSDLADPEITAVWLDYFTSKGLPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G K+ L + LA K ++G L R R +VG PNVGKS LINRL +
Sbjct: 84 AVDAHHGAGVKKMVALTERLAQPAIKKYMARGRLARLARCMVVGVPNVGKSMLINRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +W++ G LE LD+PGI+ + D A KLA+ I E+ Y+
Sbjct: 144 KAARTGNRPGVTRGEQWIKLGGKLELLDTPGILWPKFEDPETAYKLAVTGAIKEQIYNPE 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLAL----HLFNG--DTHQ 232
++ LVQ +L P AL RYK+ D+ + ++K+ + +L G D ++
Sbjct: 204 EICTKLVQWLLDNAP----DALAKRYKLRDLPENVWEV-IEKIGVYRGFYLSGGRIDEYK 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A I+ +FR+G G SLE P
Sbjct: 259 TAVFIIKEFREGSLGKYSLELP 280
>gi|52080207|ref|YP_078998.1| ribosomal biogenesis GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646014|ref|ZP_08000244.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|404489095|ref|YP_006713201.1| GTPase YlqF [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682148|ref|ZP_17656987.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
gi|81609173|sp|Q65JP4.1|RBGA_BACLD RecName: Full=Ribosome biogenesis GTPase A
gi|52003418|gb|AAU23360.1| GTP-binding domain protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348086|gb|AAU40720.1| GTPase RbgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391764|gb|EFV72561.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|383438922|gb|EID46697.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
Length = 283
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 141/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D + AW +F K G +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADSSVTKAWKQHFEKDGIPTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K L + K ++KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIRALIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +WV+ GK+LE LD+PGI+ + D+ ++LA I + ++
Sbjct: 144 NIAKTGDRPGVTTAQQWVKVGKELELLDTPGILWPKFEDELVGLRLAATGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY ++ + GK +A N D
Sbjct: 204 DVAVYGLRFLEENYP----ERLKKRYDLEEIPEEIAALFDEIGKKRGCLMAGGEINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGPLSFEKP 280
>gi|407977608|ref|ZP_11158445.1| GTPase YlqF [Bacillus sp. HYC-10]
gi|407415861|gb|EKF37442.1| GTPase YlqF [Bacillus sp. HYC-10]
Length = 282
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D W +F KQG + +
Sbjct: 24 IDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADKADPRMTKEWQAHFEKQGVRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ ++K + + + ++KG+ PRA+RA I+G PNVGKS+LINRL KR
Sbjct: 84 AINSVDGQGLNQIITISKEILKEKFDRMKAKGVKPRAIRALIIGIPNVGKSTLINRLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRY--------KIDMDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +++ G ++ N D
Sbjct: 204 DVAVYALRFLEEHYP----ERLKKRYDLADIPEDTVELFDAIGTKRGCLMSGGFINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG ++ E+P
Sbjct: 260 TEI--IIRDIRTEKFGPLTFEKP 280
>gi|134299894|ref|YP_001113390.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
gi|134052594|gb|ABO50565.1| Ras superfamily GTP-binding protein YlqF [Desulfotomaculum reducens
MI-1]
Length = 284
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 141/261 (54%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIP+S+++P++DQ LG + R+++LN+ D+ + W + K I
Sbjct: 26 VDVAFELLDARIPVSSSNPMIDQILGQKPRVIILNKSDLADPSITKQWQRALDRPYIKAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ R+A L ++ K +KG PRA+R ++G PNVGKS+ INRL+ R
Sbjct: 86 AVDTIKGEGLKEVPRVASMLVAEQMAKLAAKGRRPRAIRCMVLGIPNVGKSTFINRLVGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W+R LE LD+PGI+ + D KLA+ I E+ +D+
Sbjct: 146 KATKTGDTPGVTKGQQWIRTQGSLELLDTPGILWPKFEDPEVGYKLAVTGAIKEQVFDIY 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+V+ L+Q LA L+ RY+++ + + + L +G D + A
Sbjct: 206 EVSLKLLQWLAE---YNPEKLKERYRMNELNPEATKLLWDIGVKRGLLVSGGLVDESKVA 262
Query: 235 FRILTDFRKGKFGWISLERPP 255
IL +FR+G G +L+ PP
Sbjct: 263 QLILKEFREGLLGRYTLDLPP 283
>gi|150390502|ref|YP_001320551.1| HSR1-like GTP-binding protein [Alkaliphilus metalliredigens QYMF]
gi|149950364|gb|ABR48892.1| GTP-binding protein, HSR1-related [Alkaliphilus metalliredigens
QYMF]
Length = 285
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 9/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP+S+ +P +++ +GN+ R+++LN+ D+ N W YF QG + I
Sbjct: 26 VDVVYELLDARIPISSRNPSINEIIGNKPRVIILNKFDLADQEVTNRWVKYFKAQGIEAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + + + + KG R +R +VG PNVGKSS+IN+L R
Sbjct: 86 PVNCLNSKGLKEAIEEGQKMFQEKKDLMIKKGRKERPIRIMMVGIPNVGKSSIINQLAGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+R ++E LD+PGI+ + DQ A+KLA I + DV
Sbjct: 146 KSARTGDKPGVTKAKQWIRLKGNMELLDTPGILWPKFEDQNVALKLAFTGAIKDEIMDVE 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
D+A LV+ L +T L NRYK+D + + + + + G D + +
Sbjct: 206 DLAFRLVEKLM---LENMTNLMNRYKLDSEPAGALEMMDAIGIKRGAILPGREIDYLRVS 262
Query: 235 FRILTDFRKGKFGWISLERPPR 256
IL +FR G G IS+E PP+
Sbjct: 263 NIILDEFRAGIIGRISMEVPPK 284
>gi|392957506|ref|ZP_10323029.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
gi|391876469|gb|EIT85066.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
Length = 283
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 136/258 (52%), Gaps = 4/258 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIPL++ +P++D+ + R+L+LN+ DM W YF +G V+
Sbjct: 24 IDVVFELVDARIPLASRNPMIDEITAGKPRLLLLNKADMADPEATKQWVHYFENKGLPVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
N + G G K+ AK L + K ++KG++ PRAVRA I+G PNVGKS+LINRL
Sbjct: 84 VLNAKTGQGINKIEAKAKELVKEKFDKMKAKGIVKPRAVRALILGIPNVGKSTLINRLAG 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ + +PGVT+ +W++ G LE LD+PGI+ + DQ +KLA+ I E D
Sbjct: 144 KNIAVTGDKPGVTKKQQWIKVGTSLELLDTPGILWPKFEDQEIGLKLAVTGAIKETLLDF 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFR 236
+V + L + + N I + + + L +G D +AA
Sbjct: 204 TEVVLYALGYLKVHYSERLCERYNLADIPEEPLALFDEIGRKRGCLMSGGYIDYEKAAEI 263
Query: 237 ILTDFRKGKFGWISLERP 254
IL D R K G +S E P
Sbjct: 264 ILRDLRAEKLGRLSYELP 281
>gi|291550684|emb|CBL26946.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
L2-14]
Length = 282
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 141/260 (54%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ + W YF KQG V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKADLAEDRRNDEWMEYFKKQGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGIKSIQSVIQEACKEKMERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILQTE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
++A+ LV+ L + P V L+ +Y I+ + + + L G D +AA
Sbjct: 204 ELASELVKFLNQSYPGV----LEEKYTIESSDDNYEVLRRIAESRHCLVRGSELDVEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR G+ G ++LE P
Sbjct: 260 AILLDDFRNGRLGRLTLELP 279
>gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405]
gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|385778807|ref|YP_005687972.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|419723176|ref|ZP_14250311.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
gi|419724920|ref|ZP_14251975.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|125713506|gb|ABN51998.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum ATCC 27405]
gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|380771540|gb|EIC05405.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|380780943|gb|EIC10606.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
Length = 291
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 144/261 (55%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P +D + N+ +I+VLN+ D+ N W+ ++ QG I
Sbjct: 24 VDVVVELLDARIPASSKNPEIDGIVKNKPKIVVLNKADLADEKISNEWSKWYNSQGYATI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + G G +L + + D + R +G + R +R IVG PNVGKSSLIN++ +
Sbjct: 84 FIDSIKGTGIKQLKDQMRDIMKDRIERDRQRGRIFRPIRTMIVGIPNVGKSSLINKIAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +W+ +++ +D+PGI+ + D+ I LA+ I + D
Sbjct: 144 KSAVTGDRPGVTRNKQWINVNNEIQLMDTPGILWPKFEDKTVGINLAVTGAIKDEIIDTV 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-MDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A+IL++ L++ I + RYK++ + G +++ + +G D +
Sbjct: 204 ELASILLEHLSKTYPENI---KKRYKLESLQDKKGYELLEEAGKKRGCIISGGEVDLTRI 260
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L +FR GK G I+LERP
Sbjct: 261 AAIVLDEFRGGKIGRITLERP 281
>gi|403667643|ref|ZP_10932943.1| hypothetical protein KJC8E_02657 [Kurthia sp. JC8E]
Length = 284
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++D+ + + R+L+LN+ DM W YF +G + I
Sbjct: 24 VDIVFELIDARLPMSSRNPMLDEIIHQKNRLLILNKADMADEVQTKKWIAYFESKGHRAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G ++++ A+ + ++ + RSKGL PRA+RA IVG PNVGKS++INRL K+
Sbjct: 84 AVNSLDSKGLKRVTKAAEEVLAEKWERMRSKGLKPRAIRAMIVGIPNVGKSTMINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W++ GK LE LD+PGI+ + D KLA+ I + ++
Sbjct: 144 NIARTGNMPGVTRSQQWIKVGKQLELLDTPGILWPKFEDPRVGYKLAVTGAIKDAIMNMD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
D+A +Q L L RY+I+
Sbjct: 204 DLAIFGLQFLEEYYP---KRLHERYQIE 228
>gi|381182604|ref|ZP_09891401.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
gi|380317493|gb|EIA20815.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
Length = 287
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 118/192 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIPLS+++P++++ + +KR+++LN+ D W +F ++G +
Sbjct: 24 VDVIFELVDARIPLSSSNPMLEEIIHQKKRVIILNKSDAADEKITAEWVAHFKEKGLLAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G + R A+ L ++ +++ +G+ PRA+RA I+G PNVGKS+LINRL+K+
Sbjct: 84 PVNAQQGKNLHAIERAAQELMAEKFARQKERGMRPRAIRAMILGIPNVGKSTLINRLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK LE LD+PGI+ + DQ KLA+ I + ++
Sbjct: 144 NIAKTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEVGFKLALTGAIKDDLLNME 203
Query: 181 DVAAILVQMLAR 192
++A + L +
Sbjct: 204 EIALYGLHFLEK 215
>gi|255994296|ref|ZP_05427431.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
gi|255993009|gb|EEU03098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
Length = 284
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+PLS+ +P++D L +RI++LN+ D+ + W +F QG
Sbjct: 25 IDVVIEILDARVPLSSKNPVLDSLLRKHRRIIILNKYDLAGDSGNEKWKGHFKTQGADAF 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L R + S+++ K + +R +VG PNVGKSS INR+ K+
Sbjct: 85 LVNSITGFGIKELERHIMKIKSELD----EKNSFNKPMRLMVVGIPNVGKSSFINRMTKK 140
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +PGVTR + +RF +++ +D+PGI+ D+ A++LA C I + D +
Sbjct: 141 RSTVTGDKPGVTRGKQIIRFPNNVQLMDTPGILWPNFEDELVALRLAFCGCIKDEILDTS 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA----LHLFNG--DTHQAA 234
+A L+ L + T G ++ RYK+ + + +A + NG D +
Sbjct: 201 TLAVRLIDYLIKDET-GAKGIEKRYKLPFVTDDAVSVMDDIARARGFLIRNGEIDYERTG 259
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FRKG G I+LE P
Sbjct: 260 RTILDEFRKGLLGRITLEYP 279
>gi|403378827|ref|ZP_10920884.1| protein RbgA [Paenibacillus sp. JC66]
Length = 286
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 144/267 (53%), Gaps = 17/267 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ IE+ DARIPL++ +P++D L + R+++LN+ D+ W ++F +QG + +
Sbjct: 24 IDMAIELMDARIPLASRNPMIDDILQRKPRLILLNKADLADAQVTARWVSFFQEQGIEAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ KAL +D + KG+ PR +RA IVG PNVGKS+LINRL R
Sbjct: 84 PVDSVSGTRVKEIVPACKALLADKIEAQIRKGMKPRPIRALIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+R G +LE LD+PGI+ + DQ I+LA I +
Sbjct: 144 KAAITGDRPGVTKGQQWIRIGGELELLDTPGILWPKFEDQQVGIRLAATGAIKDELLHQQ 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDM------DGTCGKTFVQKLALH---LFNG-- 228
D+A ++++ ML P LQ RY ++ D T ++++ L +G
Sbjct: 204 DIAFVIIRDMLGTYP----GQLQERYGLESLPTDPEDNEQVVTVMEQIGRKRGCLQSGGR 259
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ L D R GK G ISLE P
Sbjct: 260 VDLDKASTLFLNDLRSGKLGRISLEWP 286
>gi|397601583|gb|EJK57948.1| hypothetical protein THAOC_21972 [Thalassiosira oceanica]
Length = 446
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 144/320 (45%), Gaps = 77/320 (24%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT--- 57
+DVVIEVRD+R P +T HP + +W R R++VL R D ++ R W + + G
Sbjct: 38 VDVVIEVRDSRAPKATAHPSVGKWAAGRPRVVVLTRVDTVTTRSRETWRQAYERLGADRW 97
Query: 58 ----------------------------------------KVIFSNGQLGMGTMKLSRLA 77
+V+F + + G GT ++R
Sbjct: 98 QEKLAGDERNRNAQFETERRKYVDGEDGDSVKLRGADGVEEVLFVDAKRGQGTHAITRAV 157
Query: 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 137
VN +R+ +GL R++R GI+G+PNVGKS+LINRLL R+ A PG+TR L+W
Sbjct: 158 YRAGRHVNERRKRRGLNDRSLRVGIIGFPNVGKSALINRLLGRKRAKTANTPGITRSLQW 217
Query: 138 VRFGKD----------------LEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVAD 181
+R D E LDSPGIIP + DQ A+ LA C+ +G
Sbjct: 218 MRVAADKSTSASGSGSANAKKGFELLDSPGIIPSDMLDQNDALLLAACNSVG-------- 269
Query: 182 VAAILVQMLARIPTVGIT------ALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAF 235
V A + T G A +N ++ G+ + +A + GD AA
Sbjct: 270 VGAKIAARWGSESTDGSARSWLDFAAKNADRM----PSGEDMLFIVADNTCKGDPENAAR 325
Query: 236 RILTDFRKGKFGWISLERPP 255
+IL DFR G+ G +SL+ P
Sbjct: 326 KILQDFRNGRMGPVSLQLAP 345
>gi|323489565|ref|ZP_08094792.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
gi|323396696|gb|EGA89515.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
Length = 288
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+PLS+ +P++DQ + + R+++LN+ DM + W YF QGT+ +
Sbjct: 24 VDIIFELVDARLPLSSRNPMIDQVIQQKPRLIILNKMDMADEVETKKWIRYFEDQGTRAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ +K + + + +KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSLEGRGLQLVTKASKEILEEKWDRMIAKGIKPRAIRAMIVGIPNVGKSTLINRLSKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + D +KLA+ I + +
Sbjct: 144 SLAKTGNMPGVTKAQQWIKVGKEIELLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQ 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKID-MDGTCGKTF 217
++A ++ L R P ++ RY ID +D TF
Sbjct: 204 ELAIYALKFLEERYP----DRMKERYGIDHIDEEIVNTF 238
>gi|220931580|ref|YP_002508488.1| HSR1-like GTP-binding protein [Halothermothrix orenii H 168]
gi|219992890|gb|ACL69493.1| GTP-binding protein HSR1-related [Halothermothrix orenii H 168]
Length = 282
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DARIP S+ +P +D L N+KR++VLN+ D+ + W YF ++ V+
Sbjct: 23 VDIVVEVLDARIPASSKNPDIDSILDNKKRVIVLNKIDLAHPDLTSTWLDYF-RRSYPVM 81
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L RL + +N KG R VR ++G PNVGKS+ +N L
Sbjct: 82 GVNSITGEGIGELKRLLRNEGERINKVLEEKGRQQRPVRIMVIGIPNVGKSAFLNILAGS 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W++ GK ++ LD+PGI+ +I D+ KLAI I E +YD
Sbjct: 142 NRVKTGNRPGVTRGKQWLKLGKGVQLLDTPGILWPKIEDEETGHKLAITGAIDENNYDKE 201
Query: 181 DVAAILVQMLARI------PTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQ 232
A LV L I T I + + D+ GK + ++ G D H+
Sbjct: 202 TAAYKLVCYLMDIDSEILEKTYNIGIYEGLHPYDIVELIGK----QRGCYMSGGKIDRHK 257
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+ IL DFR+GK G I+LE+P
Sbjct: 258 TSEIILNDFRRGKMGRITLEKP 279
>gi|154503289|ref|ZP_02040349.1| hypothetical protein RUMGNA_01113 [Ruminococcus gnavus ATCC 29149]
gi|153795956|gb|EDN78376.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus gnavus
ATCC 29149]
Length = 288
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ +AWA YF K+G V+
Sbjct: 24 IDLVIELVDARLPVSSRNPDIDELGKNKARLILLNKADLAEEKWNDAWAEYFKKKGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI--DMDGTCGKTFVQKLALHLFNG---DTHQAA 234
++ L++ L + P V LQ +Y + D + K L G D +AA
Sbjct: 204 ELGGELIRFLVQSYPGV----LQEKYDVSESQDIYACLEEIAKNRHCLVRGSELDMEKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR G+ G I+LE P
Sbjct: 260 RLLLDDFRNGRIGRITLEFP 279
>gi|336430713|ref|ZP_08610652.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336016806|gb|EGN46582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 279
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 142/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DARIPLS+ +P +D+ N+ R++++N+ D+ A AW +F +QG K +
Sbjct: 24 IDLIIELVDARIPLSSRNPDIDELGRNKARLVLMNKSDLADPACNRAWTAWFQEQGIKSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 84 EINAQSGQGMKAIQGAVQEVCREKIERDRKRGILNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K LE LD+PGI+ + DQ+ +KLA IG + ++
Sbjct: 144 ACTKTGNKPGVTKGKQWIRLNKGLELLDTPGILWPKFEDQSVGMKLAF---IGSMNDEII 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF---VQKLALHLFNG--DTHQAAF 235
+ + V +++ + + L+ RY + + T + ++ + G D +AA
Sbjct: 201 IMDELAVDLISFLQEWYLPLLKERYGLTGEETPVQVLEAAAERRKCYKKGGEPDLSRAAQ 260
Query: 236 RILTDFRKGKFGWISLERP 254
+ DFR G+ G ISLERP
Sbjct: 261 LVTDDFRSGRLGRISLERP 279
>gi|438002276|ref|YP_007272019.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Tepidanaerobacter acetatoxydans Re1]
gi|432179070|emb|CCP26043.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Tepidanaerobacter acetatoxydans Re1]
Length = 269
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR PLST P ++ +GN+ I+++N+ D+ + W YF KQG K I
Sbjct: 9 VDVVLELTDARAPLSTHLPDINSLIGNKNSIMIMNKADLADKKITDMWLKYFKKQGIKAI 68
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N ++K S L K L + K + R+ R I+G PNVGKSSLIN++ R
Sbjct: 69 AVN------SLKKSELKKPLLA-WKCKEENGS---RSTRCMIIGIPNVGKSSLINQMAGR 118
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A PGVTR W++ +LE LD+PGI+ + D+ IKLAI I + D
Sbjct: 119 KSARTADIPGVTRNKMWLKVDDNLELLDTPGILWPKFEDKTTGIKLAILGSIKQELLDFE 178
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++ IL++ +L P AL++RY + D + ++K+A + L G D +++
Sbjct: 179 KLSLILIKYLLVNYP----QALKDRYGV--DSSTPAEILEKIAQNRGFLVEGGVFDINRS 232
Query: 234 AFRILTDFRKGKFGWISLERPPR 256
A ++ +FR+GK G ISLE+P
Sbjct: 233 AKTLINEFRQGKLGRISLEKPEE 255
>gi|414160551|ref|ZP_11416817.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878071|gb|EKS25960.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 289
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 122/213 (57%), Gaps = 3/213 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + N+ R+++LN++DM ++ + W YF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIQNKPRVVILNKKDMANLNETAKWEDYFRSKGYFPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L +
Sbjct: 84 SVDAKHGKGLKSVEQAAVQATKEKFERDKAKGLKPRAIRAMIVGIPNVGKSTLINKLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 144 AIAKTGNTPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTC 213
DVA ++ + ALQ Y ID+D
Sbjct: 204 DVAIFGLEFYK---AHALEALQKHYNIDLDAEA 233
>gi|442805506|ref|YP_007373655.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741356|gb|AGC69045.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 301
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D+ N+ R++ LN+ D+ W YF + G +
Sbjct: 24 IDVVIELLDARIPRSSQNPEIDKLTKNKPRVIALNKSDLADPRKTERWVEYFNQNGIDTV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G L K + K KG + R +R IVG PNVGKS+LIN++ +
Sbjct: 84 CINALTGEGIPALVVQLKKMMEPKLRKVAEKGRIQRPIRTMIVGIPNVGKSALINKIAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +WVR +++ LD+PGI+ + D + LA I + D+
Sbjct: 144 AAAATGDRPGVTRNKQWVRINPEIQLLDTPGILWPKFDDPKTGLYLAFTGAIRDEILDIT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-MDGTCGKTFVQKLALH---LFNG---DTHQA 233
+A+ L+++LA++ T L+NRYK D ++G G +++ L +G D ++
Sbjct: 204 TLASNLLELLAKMYP---TELKNRYKFDTLEGKAGHVLLEEAGRKRGCLVSGGEVDYYRI 260
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL +FR K G I+LE P
Sbjct: 261 SNIILDEFRGAKIGRITLETP 281
>gi|389815303|ref|ZP_10206649.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
gi|388466082|gb|EIM08391.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
Length = 289
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+PLS+ +P++DQ + + R+++LN+ DM + W YF QG++ +
Sbjct: 24 VDIIFELVDARLPLSSRNPMIDQVIQQKPRLIILNKMDMADEVETKKWIRYFEDQGSRAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ +K + D + +KG+ PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSLEGRGLQLVTKASKEILEDKWDRMIAKGIKPRAIRAMIVGIPNVGKSTLINRLSKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK++E LD+PGI+ + D +KLA+ I + +
Sbjct: 144 SLAKTGNMPGVTKAQQWIKVGKEIELLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQ 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKID-MDGTCGKTF 217
++A ++ L R P + RY ID +D TF
Sbjct: 204 ELAIYSLKFLEERYP----ERMMERYGIDHVDEEIVNTF 238
>gi|420145723|ref|ZP_14653178.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402623|gb|EJN55941.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 285
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 142/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+PL++ +P++DQ + + R+++LN+ D+ A AW YF + G I
Sbjct: 25 VDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKADLADPALNAAWINYFKQHGLPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A+ + +D +++++G+ + +RA +G PNVGKS+++NRL+KR
Sbjct: 85 SIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKPIRAICIGIPNVGKSTILNRLVKR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK LE LD+PGI+ + D KLA+ I + Y
Sbjct: 145 NVAITGNHPGVTKKQQWLKAGKSLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA + LA LQ RY++ D + T ++ D +A+ R+
Sbjct: 205 DVA---LYALAFFKQYFPERLQKRYRLTEADFELTDPDLLLKITDDLGLKDDYERASERL 261
Query: 238 LTDFRKGKFGWISLER 253
+ D RKGK G +L++
Sbjct: 262 ILDCRKGKLGRYTLDQ 277
>gi|325262273|ref|ZP_08129010.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
gi|324032105|gb|EGB93383.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
Length = 283
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P +D N+ R+++LN+ D+ +AWA YF +G V+
Sbjct: 24 IDLVIELVDARIPVSSRNPEIDDLGKNKARLILLNKSDLAEDKWNDAWAEYFKGKGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACTKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNSE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDG---TCGKTFVQKLALHLFNG---DTHQA 233
++A L+ L + P + L+ +Y+I+ C + + L G DT +A
Sbjct: 204 ELAMELIGFLKQSYPGI----LKGKYQIEESEDHFECLRNIAESRHC-LVKGSELDTEKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L DFR G+ G I+LE P
Sbjct: 259 ARLLLDDFRNGRIGKITLEFP 279
>gi|283768288|ref|ZP_06341200.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
gi|283104680|gb|EFC06052.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
Length = 286
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 133/258 (51%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE RDARIPL++ +PL+DQ +G + R+++L + D+ W YF ++ K I
Sbjct: 25 VDMVIECRDARIPLASKNPLIDQLIGQKPRLILLTKIDLADPIKIKEWIRYFDRENQKAI 84
Query: 61 FSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
N + G G K + L K+RS+G+ PR +RA + G PNVGKS+LINR+
Sbjct: 85 AVNMKKGQGFQKEIVSACLKLNQKKRDKQRSRGIEPRPIRAMVCGIPNVGKSTLINRISG 144
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ A RPGVTR L W+ ++L+ LD+PG++ + DQ LA+ I E D+
Sbjct: 145 KNRLEVANRPGVTRSLTWLHADRELDLLDTPGVLWPKFEDQRVGSLLAVLGSINE---DI 201
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMD---GTCGKTFVQKLALHLFNG--DTHQAA 234
D I + + I Y I + K QK L DT +AA
Sbjct: 202 LDQKFIAMDTIRSIQEGYPHFFSQVYGIQENLNPNQMLKAIAQKRGFKLEGDLWDTKRAA 261
Query: 235 FRILTDFRKGKFGWISLE 252
+ D RKGKFG ISLE
Sbjct: 262 QSFIHDLRKGKFGGISLE 279
>gi|331091008|ref|ZP_08339850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405230|gb|EGG84766.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 283
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 4/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP+S+ +P +D+ N+ R+++LN+ D+ +AWA YF +G V+
Sbjct: 24 IDLVIELVDARIPMSSRNPDIDELGKNKARLILLNKSDLAEDRQTDAWAEYFRGKGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ +KLA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQQVGLKLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
++A L++ L T G+ A + + D + K L G D + A +
Sbjct: 204 ELAGELIKFLNAHYT-GVLAEKYGIEEQEDSYACLMEIAKNRHCLLRGNELDMEKVAMIL 262
Query: 238 LTDFRKGKFGWISLERP 254
DFR G+ G I+LE P
Sbjct: 263 TDDFRNGRLGKITLEFP 279
>gi|410460657|ref|ZP_11314331.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
gi|409926711|gb|EKN63865.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
Length = 285
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++D+ + + R+++LN+ D+ + W YF +G K +
Sbjct: 24 IDVVIELVDARIPYSSRNPMIDEIISGKPRLVLLNKADLADPKKTDEWIIYFENKGYKCL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
N Q + KAL + K R+KG+ RA+RA IVG PNVGKS+LINRL
Sbjct: 84 AINAQTKNDMKNIISECKALTQEKFDKMRAKGIKNTRAIRALIVGIPNVGKSTLINRLAN 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ + RPGVT +W++ GK+ E LD+PGI+ + DQ +LA+ I E D
Sbjct: 144 KPIAKTGDRPGVTTGQQWIKVGKEFELLDTPGILWPKFEDQEVGYRLAVTGAIKENLLDF 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGT-CGKTFVQ--KLALHLFNG---DTHQA 233
DV ++ L + L+ RY+++ T + F Q K L G D +
Sbjct: 204 QDVVVYALKFLTKYYP---DNLKERYQLNEISTEMVELFDQIGKFRGCLMGGGLIDYDKT 260
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++ D R GK G ++ + P
Sbjct: 261 AEVVIRDLRSGKLGRLTFDHP 281
>gi|333394924|ref|ZP_08476743.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 285
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 142/256 (55%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+PL++ +P++DQ + + R+++LN+ D+ A AW YF + I
Sbjct: 25 VDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKADLADPALNAAWINYFKQHDLPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A+ + +D +++++G+ + +RA +G PNVGKS+++NRL+KR
Sbjct: 85 SIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKPIRAICIGIPNVGKSTILNRLVKR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK LE LD+PGI+ + D KLA+ I + Y
Sbjct: 145 NVAITGNHPGVTKKQQWLKAGKSLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA + LA LQ RY++ D + T ++ A D +A+ R+
Sbjct: 205 DVA---LYALAFFKQYFPERLQKRYRLTEADFELTDPDLLLKITADLGLKDDYERASERL 261
Query: 238 LTDFRKGKFGWISLER 253
+ D RKGK G +L++
Sbjct: 262 ILDCRKGKLGRYTLDQ 277
>gi|332686611|ref|YP_004456385.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
gi|332370620|dbj|BAK21576.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
Length = 284
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + +KR+++LN+ D+ W YF G +
Sbjct: 24 VDIVFELIDARLPLSSRNPMLDQIIQQKKRLILLNKSDLADPDQNKKWVNYFTNLGNTAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G K+ AK + + + KGL R ++A +G PNVGKS+L+NRL+ +
Sbjct: 84 LVNAKQDKGINKIVLAAKETLKEKQAREKEKGLKKRPIKAMCIGIPNVGKSTLMNRLIGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G DLE LD+PGI+ + D KLA+ I ++
Sbjct: 144 KVAQTGNKPGVTKGQQWLRVGNDLELLDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
D+A + L T +LQ R+ + D+ + + H F D + + I
Sbjct: 204 DLA---IYGLEFFTTFYPESLQERFHLSESDIQLPPAELLIMISEKHGFKTDYERTSNMI 260
Query: 238 LTDFRKGKFGWISLER 253
+ + R G+ G +L+R
Sbjct: 261 IQEIRSGRLGTYTLDR 276
>gi|379727377|ref|YP_005319562.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
gi|376318280|dbj|BAL62067.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
Length = 284
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + +KR+++LN+ D+ W YF G +
Sbjct: 24 VDIVFELIDARLPLSSRNPMLDQIIQQKKRLILLNKSDLADPDQNKKWVNYFTNLGNTAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G K+ AK + + + KGL R ++A +G PNVGKS+L+NRL+ +
Sbjct: 84 LVNAKQDKGINKIVLAAKETLKEKQAREKEKGLKKRPIKAMCIGIPNVGKSTLMNRLIGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G DLE LD+PGI+ + D KLA+ I ++
Sbjct: 144 KVAQTGNKPGVTKGQQWLRVGNDLELLDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
D+A + L T +LQ R+ + D+ + + H F D + + I
Sbjct: 204 DLA---IYGLEFFTTFYPESLQERFHLSESDIQLPPAELLIMISEKHGFKTDYERTSNMI 260
Query: 238 LTDFRKGKFGWISLER 253
+ + R G+ G +L+R
Sbjct: 261 IQEIRSGRLGTYTLDR 276
>gi|335049776|ref|ZP_08542762.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
gi|333762271|gb|EGL39775.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
Length = 287
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 146/262 (55%), Gaps = 15/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+T+P++ +GN+ ++VLN+ D+ A+ AW + ++G +V+
Sbjct: 24 IDVVVELVDARIPWSSTNPMIGTLIGNKPSVVVLNKADLADAAEVQAWIQQYEREGRQVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G KL + + LA+ R +GL R+VR I+G PNVGKS+LINRL R
Sbjct: 84 ALNSKEGKSGKKLVAVIRRLAAPKLAHWRQRGLKNRSVRTMILGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PG T+ +WV G+ L+ LD+PG++ ++ +Q +A +LA I S V
Sbjct: 144 NVAKTADKPGETKGKQWVHLGEYLDLLDTPGVLWPKLENQVSAYRLAATGAI---SDTVF 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA---------LHLFNGDTH 231
D +++Q+LA + LQ R+ ++ G T ++ LA L D
Sbjct: 201 DRQTVVLQLLAELRQWYPQELQRRFSLEQ---LGDTPLETLAAIGKKRGCLLRGGEPDWD 257
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ +L ++R+GK G +SL+
Sbjct: 258 KMYTLVLKEYREGKIGRLSLDH 279
>gi|225374457|ref|ZP_03751678.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
gi|225213695|gb|EEG96049.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
Length = 284
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R++++N+ D+ WA YF K G V+
Sbjct: 24 IDLVIELVDARIPLSSRNPDIDELGKNKARLIIMNKSDLSDENQNKEWAAYFKKMGCYVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 84 GLDARTKAGMKTVTNVVMEACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K+LE LD+PGI+ + DQ ++LA+ I + ++
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNLELLDTPGILWPKFEDQMVGLRLALIGAIKDEILNID 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTHQAAF 235
+++ L+++L R GI L +RY +D T K Q K D +AA
Sbjct: 204 ELSLELIKVLTR-DYAGI--LTDRYGVDETQTPVKILEQIAENRKCISKGNELDYSKAAA 260
Query: 236 RILTDFRKGKFGWISLERP 254
++ +FR GK G I+LE P
Sbjct: 261 LLIDEFRGGKLGKITLEWP 279
>gi|329121229|ref|ZP_08249856.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
gi|327470163|gb|EGF15626.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
Length = 286
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 138/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV +E+ DARIP+S+ +P+++ + N+ RI+VLN+ D+ + W YF K+ VI
Sbjct: 24 VDVAVELLDARIPMSSANPMVENLVQNKPRIIVLNKSDLADVKITEKWIEYFKKENIDVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G KL L + A V K + +GL R+VR I+G PNVGKS+LIN L
Sbjct: 84 PVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVRIMILGIPNVGKSTLINFLSGS 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A PG T+ +WVR L+ LD+PG++ + DQ AA+KLA I +D
Sbjct: 144 KATRTANTPGHTKGKQWVRLSSGLDLLDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSY 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQAA 234
+V L LA + + L+ +Y I+ D + K L G D+ +A
Sbjct: 204 EVVTTL---LAALKEISPQILKEKYDIEDVNQDTQILLELIGKRRGCLLPGGEIDSTRAE 260
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR GK G ++L+ PP
Sbjct: 261 ALVLTDFRSGKLGRVTLDMPP 281
>gi|337750071|ref|YP_004644233.1| protein RbgA [Paenibacillus mucilaginosus KNP414]
gi|336301260|gb|AEI44363.1| RbgA [Paenibacillus mucilaginosus KNP414]
Length = 294
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 143/266 (53%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ IE+ DARIPLS+ +P++D+ L N+ R+++LN+ D+ W YFA+QG +
Sbjct: 24 IDLAIELLDARIPLSSRNPMIDEILLNKPRLVLLNKSDLADPERTKEWVAYFAEQGLNAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ +K L + + KG+ PRA+RA IVG PNVGKS+LINR+ R
Sbjct: 84 PIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKGINPRAIRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ G ++E LD+PGI+ + DQ +LA I E
Sbjct: 144 KIAATGDKPGVTKGQQWIKVGTEMELLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM---DGTCGKTFVQKLAL------HLFNG--- 228
++A ++ L + G AL+ R+ +D D V+ + L +G
Sbjct: 204 EIALFAMRYLTQ--HYG-DALKERFGLDKLPEDPQDTDAIVEVMEAVGRKRGALVSGGRV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G I+LE P
Sbjct: 261 DLEKASLAILRELRAGKLGRITLETP 286
>gi|358064079|ref|ZP_09150668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
gi|356697712|gb|EHI59283.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
Length = 283
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IEV DAR+P S+ +P +D+ N+ RI++LN+ D+ + +AWA +F Q VI
Sbjct: 24 IDLIIEVVDARVPFSSRNPDIDELGQNKARIVLLNKSDLSNERWNDAWAEWFKSQDCHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +++ + + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 84 KVNSRSGAGLKQINSVVQEACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K LE LD+PGI+ R +Q + LA IG + ++
Sbjct: 144 ACTKTGNKPGVTKGNQWIRLNKSLELLDTPGILWPRFENQEVGLHLAF---IGSINDEIL 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-MDGTCGKTFVQKLALHLFNG---DTHQAAFR 236
+ + V++L + ++ RY+I+ D + ++ L G D +AA
Sbjct: 201 NKEEMAVELLKFMMENYRPVMEERYQIEGEDPYKALEQIARVRSCLAKGGELDVSKAANL 260
Query: 237 ILTDFRKGKFGWISLERPP 255
+ DFR GK G ++LE PP
Sbjct: 261 FVDDFRSGKLGRVTLEFPP 279
>gi|430870490|ref|ZP_19483258.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
gi|430558901|gb|ELA98293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
Length = 286
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ NRY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---NRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|160880533|ref|YP_001559501.1| GTP-binding protein HSR1-related [Clostridium phytofermentans ISDg]
gi|160429199|gb|ABX42762.1| GTP-binding protein HSR1-related [Clostridium phytofermentans ISDg]
Length = 292
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 2/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P +D N+ RI++LN+ D+ +AW +Y+ K+G V
Sbjct: 24 IDVVIELVDARIPYSSKNPDIDDLAKNKSRIILLNKYDLADQKMTDAWKSYYEKKGWFVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + K + + R +G+L R +RA IVG PNVGKS+ IN +
Sbjct: 84 LVNSRNGSGVKNVHEVIKQACQEKIERDRKRGILNRPIRAMIVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQ +++A I + +
Sbjct: 144 ACTKTGNKPGVTKGKQWIKLNKNVELLDTPGILWPKFEDQVVGMRIAFIGSINDDILNPR 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQAAFRIL 238
D+ L++ L R+ + ++D + +K A L G D +AA +L
Sbjct: 204 DLCYELIEYLHRVYPGVLGEKYGMEEVDSNIENLDLIAKKRACLLKGGELDLVKAANFVL 263
Query: 239 TDFRKGKFGWISLERP 254
DFR G+ I+LE P
Sbjct: 264 DDFRNGRIARITLEHP 279
>gi|313892603|ref|ZP_07826190.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
gi|313119000|gb|EFR42205.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
Length = 286
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 138/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV +E+ DARIP+S+ +P+++ + N+ RI+VLN+ D+ + W YF K+ VI
Sbjct: 24 VDVAVELLDARIPMSSANPMVENLVQNKPRIIVLNKSDLADVKITEKWIEYFKKENIDVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G KL L + A V K + +GL R+VR I+G PNVGKS+LIN L
Sbjct: 84 PVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVRIMILGIPNVGKSTLINFLSGS 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A PG T+ +WVR L+ LD+PG++ + DQ AA+KLA I +D
Sbjct: 144 KATRTANTPGHTKGKQWVRLSSGLDLLDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSY 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQAA 234
+V L LA + + L+ +Y I+ D + K L G D+ +A
Sbjct: 204 EVVTTL---LAALKEISPQILKEKYDIEDVNQDTQILLELIGKRRGCLLPGGEIDSTRAE 260
Query: 235 FRILTDFRKGKFGWISLERPP 255
+LTDFR GK G ++L+ PP
Sbjct: 261 ALVLTDFRSGKLGRVTLDVPP 281
>gi|366053163|ref|ZP_09450885.1| GTP-binding protein YlqF [Lactobacillus suebicus KCTC 3549]
Length = 289
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 134/259 (51%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P + + +G++ +L++ + D+ N W YF G VI
Sbjct: 25 VDIVFELVDARLPYSSLNPEIKKAMGDKPHVLIMTKLDLADNNITNDWINYFTDHGLPVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + SD K KGL RA+RA VG PNVGKS+L+N L+KR
Sbjct: 85 AVDSRDRKVASIVTKKAQEVLSDKIAKNEDKGLSKRAIRAMCVGVPNVGKSTLLNHLVKR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + Q +KLA+ I + +
Sbjct: 145 NVANTGNRPGVTTGQQWLRLSSNLELLDTPGVLWPKFQTQEIGVKLALSGTIKDSLFPKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-----FNGDTHQAAF 235
DVA + I V ++ RY + D + L + F D +A+
Sbjct: 205 DVALFAIH---HIRQVNSGVIRERYHLSEDQLSPDLSDADVLLAITTKIGFKDDYDRASE 261
Query: 236 RILTDFRKGKFGWISLERP 254
RI+ D RKGK G ISLE P
Sbjct: 262 RIIFDLRKGKLGRISLESP 280
>gi|224476369|ref|YP_002633975.1| ribosomal biogenesis GTPase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420976|emb|CAL27790.1| putative GTPase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 289
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ + ++D+ + N+ R+++LN++DM ++++ + W YF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNSMIDEVIQNKPRVVILNKKDMANLSEISKWKDYFRSKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L +
Sbjct: 84 AVDAKHGKGLKQVEQAAIEATKEKFERDKAKGLKPRAIRAMIVGIPNVGKSTLINKLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 144 AIAKTGNTPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV------QKLALHLFNGDTHQAA 234
DVA + L + ALQ + +D+D ++ AL N ++A
Sbjct: 204 DVA---IYGLDFFKEHDVEALQKNFNVDVDADAENMEWFDAIGRRRGALQRGNEVDYEAV 260
Query: 235 FR-ILTDFRKGKFGWISLE 252
I+ D R GK G S +
Sbjct: 261 IEMIINDIRNGKLGTHSFD 279
>gi|374708839|ref|ZP_09713273.1| GTPase YlqF [Sporolactobacillus inulinus CASD]
Length = 288
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 139/269 (51%), Gaps = 19/269 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ D+R+P+S+ +PL+D+ + R+L++N+ DM AW YF G KV
Sbjct: 24 IDVVIELVDSRVPMSSRNPLVDEIASGKPRLLLMNKIDMADRRATKAWQNYFEDHGLKVH 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + L + K KG P A RA I+G PNVGKS+LINRL +
Sbjct: 84 LVNSQTGQGVSMIPEAVRQLTAARRKKLEDKGFRPHADRALILGIPNVGKSTLINRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ RPGVT +W++ GK +E LD+PGI+ + D ++LA I E D
Sbjct: 144 RIAKIGDRPGVTTAQQWIKVGKTMELLDTPGILWPKFDDPQVGLRLAATGAIKEELLDFQ 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKI----DMDGTCGKTFVQKLALH-------LFNG 228
++A L++ ML A R+++ ++DG + + K+ L +G
Sbjct: 204 EIAFFLIKTMLVHYR----EAFAKRFQLADLPELDGVDDQDLIVKVFDQIGKKRGCLMSG 259
Query: 229 ---DTHQAAFRILTDFRKGKFGWISLERP 254
+ + + I+ DFR K G ++LE P
Sbjct: 260 GIINYDRVSELIIRDFRGQKIGPLTLEWP 288
>gi|379722919|ref|YP_005315050.1| protein RbgA [Paenibacillus mucilaginosus 3016]
gi|386725697|ref|YP_006192023.1| protein RbgA [Paenibacillus mucilaginosus K02]
gi|378571591|gb|AFC31901.1| RbgA [Paenibacillus mucilaginosus 3016]
gi|384092822|gb|AFH64258.1| protein RbgA [Paenibacillus mucilaginosus K02]
Length = 294
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 143/266 (53%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ IE+ DARIPLS+ +P++D+ L N+ R+++LN+ D+ W YFA+QG +
Sbjct: 24 IDLAIELLDARIPLSSRNPMIDEILLNKPRLVLLNKSDLADPERTKEWVAYFAEQGLNAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ +K L + + KG+ PRA+RA IVG PNVGKS+LINR+ R
Sbjct: 84 PIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKGINPRAIRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ G ++E LD+PGI+ + DQ +LA I E
Sbjct: 144 KIAATGDKPGVTKGQQWIKVGTEMELLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM---DGTCGKTFVQKLAL------HLFNG--- 228
++A ++ L + G AL+ R+ +D D V+ + L +G
Sbjct: 204 EIALFAMRYLTQ--HYG-DALKERFGLDKLPEDPQDTDAIVKVMEAVGRKRGALVSGGRV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G I+LE P
Sbjct: 261 DLEKASLAILRELRAGKLGRITLETP 286
>gi|266625486|ref|ZP_06118421.1| ribosome biogenesis GTP-binding protein YlqF, partial [Clostridium
hathewayi DSM 13479]
gi|288862612|gb|EFC94910.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
DSM 13479]
Length = 282
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 141/261 (54%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D + R+++LN+ D+ WA YF ++G V+
Sbjct: 9 IDLIIELVDARVPLSSRNPDIDDIGAGKARLILLNKSDLADERCNLKWAAYFQEKGYFVV 68
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ + + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 69 KVNSRSGAGLKAINGVVQEACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSFAGK 128
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K LE LD+PGI+ + DQ I+LA+ I + +
Sbjct: 129 ACAKTGNKPGVTKGNQWIRLNKSLELLDTPGILWPKFEDQTVGIRLALIGSINDEILNKD 188
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDM-DGTCGKTFVQKLALHLFNG---DTHQAAF 235
++A L++ L + P V L+++Y+ D D + K L G D +A+
Sbjct: 189 ELALELIRFLQKQYPNV----LEDKYQADASDAVELLNQIAKARACLSKGGELDLAKASR 244
Query: 236 RILTDFRKGKFGWISLERPPR 256
++ DFR GK G I+LE PP
Sbjct: 245 LLIDDFRNGKLGKITLELPPE 265
>gi|392960563|ref|ZP_10326031.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|421054680|ref|ZP_15517645.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|421061048|ref|ZP_15523432.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|421063740|ref|ZP_15525686.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
gi|421071543|ref|ZP_15532659.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392440361|gb|EIW18041.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|392446808|gb|EIW24079.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392452123|gb|EIW29076.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|392455140|gb|EIW31947.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|392462310|gb|EIW38405.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
Length = 286
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 136/261 (52%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P++ Q L + R++ LN+ D+ W F QG +V+
Sbjct: 27 VDVVIELLDARIPVSSANPVIHQILEGKPRVVALNKIDLAEPEWTKQWVDTFHAQGLQVV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT L + L S K +KG+ PRAVRA I+G PNVGKSSLINRLL
Sbjct: 87 TIDSMTGRGTKALVSQVEQLGSAKAAKLVAKGVNPRAVRAMILGIPNVGKSSLINRLLGT 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVTR +W+ GK+LE LD+PG++ + D KLA+ I + YDV
Sbjct: 147 KAVRTADKPGVTRGKQWITIGKNLELLDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVE 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG---DTHQA 233
+ L+ L + L RY + D T + L +G D +A
Sbjct: 207 TAMSKLLLFLRENYS---DRLIERYNLSSPLPEDSTELLGLIGARRGCLRSGGLIDYEKA 263
Query: 234 AFRILTDFRKGKFGWISLERP 254
IL +FR K G +L+RP
Sbjct: 264 RRIILNEFRGSKLGNFTLDRP 284
>gi|392989833|ref|YP_006488426.1| GTPase [Enterococcus hirae ATCC 9790]
gi|392337253|gb|AFM71535.1| GTPase [Enterococcus hirae ATCC 9790]
Length = 286
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 141/262 (53%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W TYF +QG + +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQTYFQQQGHQAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKALIPEAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGSELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR I RY++ + Q+LA L + D
Sbjct: 204 DLAIYGLDFFARYYPGRIA---ERYQLPEEAE------QQLAPELLMTITAKRGYKDDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSEVVVFDIRQGKLGRYTLDR 276
>gi|260583826|ref|ZP_05851574.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
gi|260158452|gb|EEW93520.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
Length = 285
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 140/261 (53%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++++ G +K++++LN+ D+ W Y+ ++G +V+
Sbjct: 25 VDVVIELVDARIPESSRNPIVNEIKGQKKQLMLLNKTDLADPIQTKKWMKYYQEEGIEVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ KAL ++ K +KG+ PR +R ++G PNVGKS+ INR++++
Sbjct: 85 TVEAKDGKGLNQVKAAIKALMAEEFEKLAAKGVRPRPIRLMVLGIPNVGKSTFINRMIQK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A RPGVT+ +W++ G D E LD+PGI+ + +Q KLA+ I + +
Sbjct: 145 NQAETANRPGVTKGQRWLKIGNDFELLDTPGILWPKFDNQEIGNKLAVTGAIKDSLLHMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM------DGTCGKTFVQKLALHLFNGDTHQAA 234
DVA + + T AL+ Y + D +KL F D +A+
Sbjct: 205 DVALFAINIFR---TYYTDALRKPYGLSATDLELSDVDLLLLITKKLG---FKDDYERAS 258
Query: 235 FRILTDFRKGKFGWISLERPP 255
RI+ D R GK G +L+ P
Sbjct: 259 ERIIFDIRAGKLGRYTLDTAP 279
>gi|421074171|ref|ZP_15535211.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
gi|392527677|gb|EIW50763.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
Length = 286
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 136/261 (52%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P++ Q L + R++ LN+ D+ W F QG +V+
Sbjct: 27 VDVVIELLDARIPVSSANPVIHQILEGKPRVVALNKIDLAEPEWTKQWVDTFHVQGLQVV 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT L + L S K +KG+ PRAVRA I+G PNVGKSSLINRLL
Sbjct: 87 TIDSMTGKGTKALVSQVEQLGSAKAAKLVAKGVNPRAVRAMILGIPNVGKSSLINRLLGT 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVTR +W+ GK+LE LD+PG++ + D KLA+ I + YDV
Sbjct: 147 KAVRTADKPGVTRGKQWITIGKNLELLDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVE 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM----DGTCGKTFVQKLALHLFNG---DTHQA 233
+ L+ L + L RY + D T + L +G D +A
Sbjct: 207 TAMSKLLLFLRENYS---DRLIERYNLSSPLPEDSTELLGLIGARRGCLRSGGLIDYEKA 263
Query: 234 AFRILTDFRKGKFGWISLERP 254
IL +FR K G +L+RP
Sbjct: 264 RRIILNEFRGSKLGNFTLDRP 284
>gi|357053018|ref|ZP_09114122.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
gi|355386443|gb|EHG33483.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
Length = 288
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 142/262 (54%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P +D + R+++LN+ D+ WA +F +G V+
Sbjct: 24 IDLVIELVDARVPLSSRNPDIDDLGAGKARMVLLNKSDLADEGQNARWAAWFEDKGIHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKR-RSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + GT+K + A ++R R +G+L R +R +VG PNVGKS+ IN
Sbjct: 84 KIDAR-NKGTLKQVQSVIQEACKEKIERDRRRGILNRPIRTMVVGIPNVGKSTFINSFAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R +PGVT+ +W+R K LE LD+PGI+ R DQ +KLA+ I ++ +
Sbjct: 143 RACAKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFEDQQVGLKLALIGSINDQILNK 202
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLA---LHLFNG---DTHQ 232
++A L++ L R P V L R+ ++ +G ++++A L G D +
Sbjct: 203 DELAWELIRFLKKRYPQV----LSERFGLETEGKEAAFILEEIARVRACLLKGGDLDVSR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +L DFR GK G I+LE P
Sbjct: 259 AAALLLDDFRAGKLGRITLEEP 280
>gi|295396863|ref|ZP_06806991.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
gi|294974889|gb|EFG50588.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
Length = 291
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 10/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+RDARIP ++ +P++D+ + N++ ++VLN++D+ W + + I
Sbjct: 25 VDIVLEIRDARIPTASMNPMLDEIIKNKRHMIVLNKQDLADPQQTKEWVKALSGENKLAI 84
Query: 61 FSNGQLGMGTMKLSRLA-KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + +G MK+ R A K D+ K R+KG+L +++R ++G PNVGKS+ IN+ K
Sbjct: 85 ALDSK-KLGDMKIFRQALKDFTQDIQDKWRNKGILHKSIRVMVIGIPNVGKSTFINQFTK 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
++ +PGVT+ +W++ KD E LD+PGI+ + DQ A KLA+ I + +
Sbjct: 144 QKKAQVGNKPGVTKGQQWIKIDKDFELLDTPGILWPKFEDQEVADKLALTGGIKDTHFYK 203
Query: 180 ADVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAF 235
DVA ++ L P A+ N Y I + +AL G D +A+
Sbjct: 204 DDVALFALEFFLHYYP----DAISNHYPIKAEDVHPPYPDLLMALTKRMGMLEDYDRASD 259
Query: 236 RILTDFRKGKFGWISLER 253
+I+ D+R GK G ++L+R
Sbjct: 260 KIIRDYRDGKLGRMTLDR 277
>gi|430821967|ref|ZP_19440548.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430864451|ref|ZP_19480373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|431743482|ref|ZP_19532361.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
gi|430443799|gb|ELA53761.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430553998|gb|ELA93672.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|430606914|gb|ELB44251.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
Length = 286
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAVYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|69246756|ref|ZP_00604104.1| GTP-binding protein [Enterococcus faecium DO]
gi|425057006|ref|ZP_18460442.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
gi|68195110|gb|EAN09570.1| GTP-binding protein [Enterococcus faecium DO]
gi|403041302|gb|EJY52327.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
Length = 293
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 31 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 90
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 91 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 150
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 151 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 210
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 211 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 261
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 262 RGSELVVHDIRQGKLGRYTLDR 283
>gi|416134962|ref|ZP_11598423.1| GTP-binding protein [Enterococcus faecium E4452]
gi|364092392|gb|EHM34773.1| GTP-binding protein [Enterococcus faecium E4452]
Length = 286
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSHNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|225028007|ref|ZP_03717199.1| hypothetical protein EUBHAL_02276 [Eubacterium hallii DSM 3353]
gi|224954721|gb|EEG35930.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium hallii
DSM 3353]
Length = 282
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P +D+ N+ R++VLN+ DM AW YF +G V
Sbjct: 24 IDIVVELVDARVPFSSKNPDIDELAKNKYRLIVLNKADMADAKTTAAWQNYFEAKGFFVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G ++ L + + + + +G+L R +RA +VG PNVGKS+ IN +
Sbjct: 84 KVNSQKGAGMKEVKSLIEKACQEKKARDKKRGILNRPLRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQA ++LA+ I E +
Sbjct: 144 ACAKTGNKPGVTKGKQWIKINKNVELLDTPGILWPKFEDQAVGLRLALIGSIKEEILNTT 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
++A + L + P V L RY +D + + ++ L G D +A
Sbjct: 204 EMAMEFIGFLKKSYPGV----LVERYSVDESKENLEILEEIARIRGCLMKGNQTDIDKAG 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L DFR + G +SLE P
Sbjct: 260 RLLLEDFRSLRLGKLSLEVP 279
>gi|257884858|ref|ZP_05664511.1| GTP-binding protein [Enterococcus faecium 1,231,501]
gi|257820696|gb|EEV47844.1| GTP-binding protein [Enterococcus faecium 1,231,501]
Length = 286
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVAAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|157692284|ref|YP_001486746.1| ribosomal biogenesis GTPase [Bacillus pumilus SAFR-032]
gi|338819265|sp|A8FD69.1|RBGA_BACP2 RecName: Full=Ribosome biogenesis GTPase A
gi|157681042|gb|ABV62186.1| GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 282
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 140/268 (52%), Gaps = 25/268 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D W +F +QG + +
Sbjct: 24 IDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADKADPRVTKEWQAHFEQQGVRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK++E LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKEMELLDTPGILWPKFEDEKVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
DVA G+ L+ Y + T + + LF+
Sbjct: 204 DVAV-----------YGLRFLEENYPERLKKRYDLTDIPEDTAELFDAIGTKRGCLMSGG 252
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
+ + I+ D R KFG ++ E+P
Sbjct: 253 FINYDKTTEIIIRDIRTEKFGPLTFEKP 280
>gi|225389109|ref|ZP_03758833.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
gi|225044827|gb|EEG55073.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
Length = 290
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 145/263 (55%), Gaps = 14/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P +D + RI++LN+ D+ A WA +F ++G V+
Sbjct: 15 IDLVIELVDARVPLSSRNPDIDDLGAGKARIVLLNKADLADEALNRRWAQWFTERGMHVV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKR-RSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + GT+K + A ++R R +G+L R +RA +VG PNVGKS+ IN
Sbjct: 75 KIDAR-NKGTLKQIQAVVQEACKEKIERDRKRGILNRPIRAMVVGIPNVGKSTFINSFAG 133
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ +PGVT+ +W+R K LE LD+PGI+ + DQ +KLA+ I + +
Sbjct: 134 KACAKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPKFEDQQVGLKLALIGSINDEILNR 193
Query: 180 ADVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFV-QKLALH---LFNG---DTH 231
++A LV +L R P V L RY+++ G C V +++A L G D
Sbjct: 194 DELALELVNVLNRRYPGV----LAERYQLENAGDCDTIQVLEQVARQRSCLAKGGELDLP 249
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+AA +L DFR G+ G I+LE P
Sbjct: 250 KAARLLLDDFRSGRLGRITLEEP 272
>gi|343520555|ref|ZP_08757524.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397513|gb|EGV10047.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 293
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ D+RIP+S+ +P++D L ++ RI++LN+ DM + W +Y+ K+G +
Sbjct: 24 VDIVGEIIDSRIPISSKNPVIDDVLKDKPRIMILNKSDMADENETKKWLSYYRKKGYGAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G K+ +AK + +D K K L + +R IVG PNVGKS+ IN + KR
Sbjct: 84 VVDALHSKGLDKIYSVAKEMLADKFKKLEEKNLSAKTIRMMIVGIPNVGKSTFINSISKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ ++W++ DLE LD+PG++ + D+ + LA I + D+
Sbjct: 144 KSAKIGDRPGVTKQVQWIKTKNDLELLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQK-------LALHLFNGDTHQA 233
++A + L + + L+NRY + D ++ L D +
Sbjct: 204 NLAFRFIDELNK---RDVNILKNRYNLSEDSYEDTLYLMDEIGRNRGAILKKNEIDYFKV 260
Query: 234 AFRILTDFRKGKFGWISLE 252
A +L DFRK K G I+LE
Sbjct: 261 ANLVLDDFRKVKLGRITLE 279
>gi|257878019|ref|ZP_05657672.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257881195|ref|ZP_05660848.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257889782|ref|ZP_05669435.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257892281|ref|ZP_05671934.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260559069|ref|ZP_05831255.1| GTP-binding protein [Enterococcus faecium C68]
gi|261207603|ref|ZP_05922288.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289565115|ref|ZP_06445568.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|293556763|ref|ZP_06675326.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|293563421|ref|ZP_06677870.1| GTP-binding protein [Enterococcus faecium E1162]
gi|294614823|ref|ZP_06694718.1| GTP-binding protein [Enterococcus faecium E1636]
gi|294617502|ref|ZP_06697133.1| GTP-binding protein [Enterococcus faecium E1679]
gi|294622302|ref|ZP_06701345.1| GTP-binding protein [Enterococcus faecium U0317]
gi|383328502|ref|YP_005354386.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|415896304|ref|ZP_11550792.1| GTP-binding protein [Enterococcus faecium E4453]
gi|427395155|ref|ZP_18888077.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430820383|ref|ZP_19439016.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430828355|ref|ZP_19446477.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430830304|ref|ZP_19448362.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430833511|ref|ZP_19451523.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430836213|ref|ZP_19454197.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430838884|ref|ZP_19456827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430844507|ref|ZP_19462405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430846488|ref|ZP_19464347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430850088|ref|ZP_19467854.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430854405|ref|ZP_19472118.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430858559|ref|ZP_19476186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430861967|ref|ZP_19479319.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430958963|ref|ZP_19486827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|431010066|ref|ZP_19489591.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|431194415|ref|ZP_19500268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|431228379|ref|ZP_19501520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|431259159|ref|ZP_19505336.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|431295455|ref|ZP_19507343.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|431368594|ref|ZP_19509408.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|431434730|ref|ZP_19513049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|431503033|ref|ZP_19515269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|431539213|ref|ZP_19517717.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|431626776|ref|ZP_19523015.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|431745763|ref|ZP_19534602.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|431748729|ref|ZP_19537484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|431754408|ref|ZP_19543069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|431758890|ref|ZP_19547510.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|431766316|ref|ZP_19554807.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|431766776|ref|ZP_19555237.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|431770395|ref|ZP_19558795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|431772916|ref|ZP_19561252.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|431776217|ref|ZP_19564484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|431778326|ref|ZP_19566537.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|431782317|ref|ZP_19570453.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
gi|431785297|ref|ZP_19573323.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|257812247|gb|EEV41005.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257816853|gb|EEV44181.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257826142|gb|EEV52768.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257828660|gb|EEV55267.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260074826|gb|EEW63142.1| GTP-binding protein [Enterococcus faecium C68]
gi|260077986|gb|EEW65692.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289163122|gb|EFD10969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|291592285|gb|EFF23899.1| GTP-binding protein [Enterococcus faecium E1636]
gi|291596242|gb|EFF27504.1| GTP-binding protein [Enterococcus faecium E1679]
gi|291598194|gb|EFF29292.1| GTP-binding protein [Enterococcus faecium U0317]
gi|291601095|gb|EFF31384.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|291604682|gb|EFF34167.1| GTP-binding protein [Enterococcus faecium E1162]
gi|364091113|gb|EHM33616.1| GTP-binding protein [Enterococcus faecium E4453]
gi|378938196|gb|AFC63268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|425724291|gb|EKU87175.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430439619|gb|ELA49952.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430482906|gb|ELA60005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430483650|gb|ELA60718.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430486252|gb|ELA63111.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430488787|gb|ELA65441.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430491285|gb|ELA67758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430497097|gb|ELA73156.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430536120|gb|ELA76497.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430538935|gb|ELA79204.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430545186|gb|ELA85172.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430548064|gb|ELA87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430549258|gb|ELA89090.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430556648|gb|ELA96145.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|430560561|gb|ELA99857.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|430572084|gb|ELB10954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|430574681|gb|ELB13444.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|430577254|gb|ELB15859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|430581545|gb|ELB19990.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|430584182|gb|ELB22532.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|430587374|gb|ELB25605.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|430587656|gb|ELB25877.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|430594476|gb|ELB32445.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|430603030|gb|ELB40573.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|430609969|gb|ELB47141.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|430613055|gb|ELB50078.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|430619002|gb|ELB55830.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|430626853|gb|ELB63403.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|430626899|gb|ELB63443.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|430632011|gb|ELB68302.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|430635322|gb|ELB71418.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|430637432|gb|ELB73448.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|430641551|gb|ELB77352.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|430643872|gb|ELB79575.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|430647784|gb|ELB83223.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|430647954|gb|ELB83389.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
Length = 286
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|258514488|ref|YP_003190710.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
gi|257778193|gb|ACV62087.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
Length = 283
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P+++ L + R++VLN+ D+ W A+ G V+
Sbjct: 24 VDVVVELLDARIPCSSRNPVINDLLSKKPRLIVLNKSDLADPNYTALWKRELAEPGAMVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ LA +V K ++KG RAVR +VG PNVGKS IN L+KR
Sbjct: 84 DVNSVKGSGIKAITPALNKLAEEVMNKLKNKGRRTRAVRCMVVGIPNVGKSFFINTLVKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVTR +W++ KDLE LD+PGI+ + DQ A KLA+ I D+
Sbjct: 144 KITKTGDKPGVTRGQQWIKVAKDLELLDTPGILWPKFDDQEVAYKLAVTGAIKSEVLDIK 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
+++ L L P V L RYK+ + + + L +G D H+A
Sbjct: 204 ELSFRLALWLRDNHPHV----LLERYKLSNLPNKAEELLSAIGRSRGFLVSGGIVDNHKA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L +FR G G +L+ P
Sbjct: 260 AVLLLKEFRDGLLGRFTLDLP 280
>gi|160947173|ref|ZP_02094340.1| hypothetical protein PEPMIC_01106 [Parvimonas micra ATCC 33270]
gi|158446307|gb|EDP23302.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas micra ATCC
33270]
Length = 293
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ D+RIP+S+ +P++D L ++ RI++LN+ DM + W +Y+ K+G +
Sbjct: 24 VDIVGEIIDSRIPISSKNPVIDDVLKDKPRIMILNKSDMADENETKKWLSYYRKKGYGAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G K+ +AK + +D K K L + +R IVG PNVGKS+ IN + KR
Sbjct: 84 VVDALHSKGLDKIYSVAKEMLADKFKKLEEKNLSAKTIRMMIVGIPNVGKSTFINSISKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ ++W++ DLE LD+PG++ + D+ + LA I + D+
Sbjct: 144 KSAKIGDRPGVTKQVQWIKTKNDLELLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQK-------LALHLFNGDTHQA 233
++A + L + + L+NRY + D ++ L D +
Sbjct: 204 NLAFRFIDELNK---RDVNILKNRYNLSEDSYEDTLYLMDEIGKNRGAILKKNEIDYFKV 260
Query: 234 AFRILTDFRKGKFGWISLE 252
A +L DFRK K G I+LE
Sbjct: 261 ANLVLDDFRKVKLGRITLE 279
>gi|293568166|ref|ZP_06679502.1| GTP-binding protein [Enterococcus faecium E1071]
gi|314938031|ref|ZP_07845341.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|314941983|ref|ZP_07848844.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|314948764|ref|ZP_07852136.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|314951782|ref|ZP_07854821.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|314991811|ref|ZP_07857269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|314995852|ref|ZP_07860939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|389868316|ref|YP_006375739.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|424779675|ref|ZP_18206586.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|424794597|ref|ZP_18220544.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|424825722|ref|ZP_18250685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|424855823|ref|ZP_18280121.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|424866148|ref|ZP_18289997.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|424938571|ref|ZP_18354355.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|424952498|ref|ZP_18367515.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|424956838|ref|ZP_18371598.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|424959384|ref|ZP_18373973.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|424963125|ref|ZP_18377390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|424967388|ref|ZP_18381091.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|424969857|ref|ZP_18383405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|424973476|ref|ZP_18386753.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|424976285|ref|ZP_18389388.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|424980599|ref|ZP_18393381.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|424983189|ref|ZP_18395789.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|424986601|ref|ZP_18399010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|424989599|ref|ZP_18401859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|424995261|ref|ZP_18407157.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|424997214|ref|ZP_18408979.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|425001557|ref|ZP_18413061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|425003209|ref|ZP_18414588.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|425009197|ref|ZP_18420229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|425010142|ref|ZP_18421112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|425013313|ref|ZP_18424049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|425017282|ref|ZP_18427795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|425019858|ref|ZP_18430195.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|425022883|ref|ZP_18433036.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|425031327|ref|ZP_18436464.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|425036885|ref|ZP_18441600.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|425039240|ref|ZP_18443797.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|425043851|ref|ZP_18448053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|425044394|ref|ZP_18448556.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|425049526|ref|ZP_18453373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|425051442|ref|ZP_18455108.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|425060028|ref|ZP_18463338.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|447912908|ref|YP_007394320.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
gi|291589156|gb|EFF20968.1| GTP-binding protein [Enterococcus faecium E1071]
gi|313589956|gb|EFR68801.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|313593622|gb|EFR72467.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|313596061|gb|EFR74906.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|313599235|gb|EFR78080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|313642606|gb|EFS07186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|313644830|gb|EFS09410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|388533565|gb|AFK58757.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|402925013|gb|EJX45189.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|402925238|gb|EJX45399.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|402926391|gb|EJX46431.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|402931138|gb|EJX50733.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|402936784|gb|EJX55935.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|402939052|gb|EJX58010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|402941118|gb|EJX59871.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|402944938|gb|EJX63318.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|402950239|gb|EJX68248.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|402950675|gb|EJX68658.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|402954529|gb|EJX72140.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|402958434|gb|EJX75747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|402963190|gb|EJX80076.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|402966045|gb|EJX82716.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|402970088|gb|EJX86454.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|402972187|gb|EJX88405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|402976063|gb|EJX91984.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|402977896|gb|EJX93669.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|402981481|gb|EJX97007.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|402986120|gb|EJY01267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|402986623|gb|EJY01738.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|402990422|gb|EJY05295.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|402992483|gb|EJY07184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|403000950|gb|EJY15033.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|403001315|gb|EJY15376.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|403004617|gb|EJY18406.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|403010679|gb|EJY24037.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|403011633|gb|EJY24927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|403013185|gb|EJY26312.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|403015972|gb|EJY28820.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|403016878|gb|EJY29667.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|403017894|gb|EJY30617.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|403027386|gb|EJY39279.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|403029919|gb|EJY41641.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|403037710|gb|EJY48974.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|403043020|gb|EJY53949.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|445188617|gb|AGE30259.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
Length = 307
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 45 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 104
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 105 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 164
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 165 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 224
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 225 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 275
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 276 RGSELVVHDIRQGKLGRYTLDR 297
>gi|160939136|ref|ZP_02086487.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
gi|158438099|gb|EDP15859.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
Length = 288
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P +D + R+++LN+ D+ WA +F +G V+
Sbjct: 24 IDLVIELVDARVPLSSRNPDIDDLGAGKARMVLLNKSDLADERQNARWAAWFEDKGIHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKR-RSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + GT+K + A ++R R +G+L R +R +VG PNVGKS+ IN
Sbjct: 84 KVDAR-NKGTLKQVQSVIQEACKEKIERDRRRGILNRPIRTMVVGIPNVGKSTFINSFAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ +PGVT+ +W+R K LE LD+PGI+ R DQ +KLA+ I ++ +
Sbjct: 143 KACAKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFEDQQVGLKLALIGSINDQILNK 202
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLA---LHLFNG---DTHQ 232
++A L++ L R P V L R+ ++ +G ++++A L G D +
Sbjct: 203 DELACELIRFLKKRYPQV----LAERFGLETEGKEAAVILEEIARVRACLLKGGDLDVSR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +L DFR GK G I+LE P
Sbjct: 259 AAGLLLDDFRAGKLGRITLEEP 280
>gi|376261100|ref|YP_005147820.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
gi|373945094|gb|AEY66015.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
Length = 292
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 138/263 (52%), Gaps = 12/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IE+ DARIP S+ +P ++ + N+ R++ N+ D+ W ++A QG I
Sbjct: 24 VDVIIELLDARIPFSSRNPEINSLINNKPRLVAFNKSDLADDRISRQWIKWYADQGIDCI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ A+ L S+ + ++KG L VR +VG PNVGKSS IN+++ +
Sbjct: 84 LINSINGKGLNEIKARARELMSEKIERNKAKGKLFTPVRTMVVGIPNVGKSSFINKIVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R ++E LD+PGI+ + DQ + LA I + D+
Sbjct: 144 ATAVTGDRPGVTRGKQWIRINSEMELLDTPGILWPKFEDQEVGMNLAFTGAIKD---DIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-------KTFVQKLALHLFNG--DTH 231
D + +++L R+ T L R+K+D + +T +K + G D
Sbjct: 201 DTGEVAMELLHRLSKTYNTELCTRFKLDPEAIKDMEPLELLETVGRKRGCIVSKGQIDYS 260
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + +L +FR GK G I+LE+P
Sbjct: 261 RISAIVLDEFRGGKIGRITLEKP 283
>gi|256762585|ref|ZP_05503165.1| GTP-binding protein, partial [Enterococcus faecalis T3]
gi|256683836|gb|EEU23531.1| GTP-binding protein [Enterococcus faecalis T3]
Length = 278
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 115/193 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P+MDQ + + R+++LN+ D+ W YF K+G + +
Sbjct: 39 VDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDLADNDQNKKWQHYFQKKGYQTL 98
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G K+ AK + + ++KGL PRA+RA +G PNVGKS+L+NRL+ +
Sbjct: 99 VINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRAMCIGIPNVGKSTLMNRLVGK 158
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 159 KIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLD 218
Query: 181 DVAAILVQMLARI 193
D+A ++ AR
Sbjct: 219 DLAIYGLEFFARF 231
>gi|345019909|ref|ZP_08783522.1| hypothetical protein OTW25_01110 [Ornithinibacillus scapharcae
TW25]
Length = 282
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 141/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DAR PLS+ +P++ Q L N+ ++++L + D+ + N W YF ++ +
Sbjct: 24 VDFVMELVDARAPLSSQNPMLQQVLQNKSKMILLMKRDLADVQVTNEWIKYFQERDIPAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N K+ +LAK L K KG+ PRA RA IVG PNVGKS+LINRL +
Sbjct: 84 AVNVNDKSDVNKVIQLAKELGQKKLDKLIQKGIQPRASRAMIVGIPNVGKSTLINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ W++ K+ E LD+PGI+ + DQ +LA I ++ +
Sbjct: 144 KIAKVGDRPGVTKQQLWIKVKKEFELLDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKL-----ALHL-FNGDTHQA 233
D+ +++ L PT+ L++RY+ID + +++ AL N + +
Sbjct: 204 DIVVFVIRYLQENYPTL----LEDRYQIDQNEEEMLIIFEQIGKFRGALESGGNVNFDKV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L D R G+ G I+LE+P
Sbjct: 260 SDIVLRDLRTGRLGKITLEKP 280
>gi|222151078|ref|YP_002560232.1| ribosomal biogenesis GTPase [Macrococcus caseolyticus JCSC5402]
gi|222120201|dbj|BAH17536.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 290
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + ++ R+++LN+ DM ++ + W +YF +QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKMDMANLNETKKWMSYFEEQGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++++ A+ + + + + KGL PRA+RA IVG PNVGKS+LINRL K+
Sbjct: 84 LIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK LE LD+PGI+ + DQ KL++ I + +
Sbjct: 144 SIAKTGNMPGVTKKQQWIKVGKTLELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNR 204
+VA GI+ LQ R
Sbjct: 204 EVA-----------IYGISFLQER 216
>gi|334135573|ref|ZP_08509057.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
gi|333606909|gb|EGL18239.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
Length = 290
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 142/267 (53%), Gaps = 17/267 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IE+ DARIP+S+ +P++D L + R+++LN+ D+ A W YF QG K +
Sbjct: 24 IDVAIELLDARIPMSSRNPMVDDILKGKPRLVLLNKADLADPAITAEWVKYFTDQGLKAL 83
Query: 61 FSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ G G + L R + +++ + + R KG+ PRA+R IVG PNVGKS+LIN+L
Sbjct: 84 PIDASSGTGVKEILPRCKELMSAKIETQLR-KGINPRAIRGLIVGIPNVGKSTLINQLAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R++ +PGVT+ +W++FG D++ LD+PGI+ + DQ +KLA I E +
Sbjct: 143 RKIANTGDKPGVTKGQQWIKFGTDMDLLDTPGILWPKFDDQNVGMKLAATGAIKEEILHL 202
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLAL------HLFNG-- 228
D+A ++ + L+ RY I+ D ++ + + +G
Sbjct: 203 DDIAFHTIRYMTEYYG---ERLKERYGIEELPADSENPNEVIEVMETIGRKRGAIISGGR 259
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D + + L + R GK G +SLE P
Sbjct: 260 VDLDKTSLLFLRELRSGKLGRVSLEVP 286
>gi|291563276|emb|CBL42092.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SS3/4]
Length = 287
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 141/262 (53%), Gaps = 9/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR PL++ +P +D + R+++LN+ D+ S AW TYF QG +V+
Sbjct: 24 VDLVIELVDARAPLASRNPDIDSLAAGKGRVILLNKADLASEKANAAWITYFESQGFQVM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +L+ L + + + R +G+L R VRA +VG PNVGKS+ IN +
Sbjct: 84 KIDARAKATLKQLNALIQEACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ + LA I + +
Sbjct: 144 AAAKTGNKPGVTKGNQWIRLNKQVELLDTPGILWPKFEDQRVGLLLAFLGSINDEILEKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
++A+ L L I T G+ L+ RY I+ DG + ++A L G D +AA
Sbjct: 204 ELASELADYLRNI-TPGL--LKERYGIEEDGKKPYELLDEIAAARACLTKGGVNDLTKAA 260
Query: 235 FRILTDFRKGKFGWISLERPPR 256
+L +FR GK G I+LE P +
Sbjct: 261 RLLLDEFRGGKLGRITLEMPEK 282
>gi|257898824|ref|ZP_05678477.1| GTP-binding protein [Enterococcus faecium Com15]
gi|257836736|gb|EEV61810.1| GTP-binding protein [Enterococcus faecium Com15]
Length = 286
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLPIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|290968506|ref|ZP_06560045.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
type_1 str. 28L]
gi|290781502|gb|EFD94091.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
type_1 str. 28L]
Length = 287
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 145/262 (55%), Gaps = 15/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+T+P++ +GN+ ++VLN+ D+ A+ AW + ++G +V+
Sbjct: 24 IDVVVELVDARIPWSSTNPMIGTLIGNKPSVVVLNKADLADAAEVRAWIQQYEREGRQVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G KL + + A+ R +GL R+VR I+G PNVGKS+LINRL R
Sbjct: 84 ALNSKEGKSGKKLVAVIRQSAAPKLAHWRQRGLKNRSVRTMILGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PG T+ +WV G+ L+ LD+PG++ ++ +Q +A +LA I S V
Sbjct: 144 NVAKTADKPGETKGKQWVHLGEYLDLLDTPGVLWPKLENQVSAYRLAATGAI---SDTVF 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA---------LHLFNGDTH 231
D +++Q+LA + LQ R+ ++ G T ++ LA L D
Sbjct: 201 DRQTVVLQLLAELRQWYPQELQRRFSLEQ---LGDTPLETLAAIGKKRGCLLRGGEPDWD 257
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ +L ++R+GK G +SL+
Sbjct: 258 KMYTLVLKEYREGKIGRLSLDH 279
>gi|167768003|ref|ZP_02440056.1| hypothetical protein CLOSS21_02546 [Clostridium sp. SS2/1]
gi|317498403|ref|ZP_07956698.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429761259|ref|ZP_19293689.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
gi|167710332|gb|EDS20911.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
SS2/1]
gi|291561005|emb|CBL39805.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SSC/2]
gi|316894297|gb|EFV16484.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429184283|gb|EKY25306.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
Length = 286
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 144/262 (54%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DARIPLS+ +P +DQ N+ R+++LN+ DM W YF ++G V
Sbjct: 24 IDIMIELVDARIPLSSRNPDIDQLAANKSRLILLNKTDMADERVTAQWEEYFKEKGFYVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+N + G G + + + R +G+ R +RA I G PNVGKS+ IN L+ +
Sbjct: 84 RTNARSGKGVKGTQAIVMDACKEKLERDRKRGIKNRPIRAMIAGIPNVGKSTFINSLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQ ++LA+ I + +
Sbjct: 144 ACTKTGNKPGVTKGKQWIKLNKNIELLDTPGILWPKFEDQQVGLRLALIGSIRDEILNQD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
++A L++ L + GI A +RY++D + K ++++AL+ G D +A+
Sbjct: 204 EMAIELIEYL-KNHYQGILA--DRYQVDENEDKVK-ILEQIALNRNCKMKGNELDYEKAS 259
Query: 235 FRILTDFRKGKFGWISLERPPR 256
+L +FR GK G ISLE P
Sbjct: 260 KIVLEEFRNGKLGKISLETPEE 281
>gi|323702666|ref|ZP_08114327.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333923310|ref|YP_004496890.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532329|gb|EGB22207.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333748871|gb|AEF93978.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 282
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 138/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D IE+ DARIP+S+ +P++DQ +GN+ R+++LN+ D+ W + KVI
Sbjct: 26 VDAAIELLDARIPVSSRNPMIDQIVGNKPRLVILNKSDLADPNLTKQWQKQLERPNVKVI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ R+A L +D K +KG PRA R ++G PNVGKSS INRL+ R
Sbjct: 86 AIDTIKGEGIKEVPRMASLLVADQMAKLAAKGRRPRATRCMVLGIPNVGKSSFINRLVGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ LE LD+PGI+ + D KLA+ I E+ ++
Sbjct: 146 KATKTGNLPGVTKGQQWIKVAGSLELLDTPGILWPKFEDPEVGFKLAVTGAIKEQVFNFY 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKL----ALHLFNG--DTHQAA 234
+VA L+Q L ++ RYK+ T +Q + L + G D +AA
Sbjct: 206 EVALKLLQWLTE---KNPDQIKVRYKLTDLAPDIPTLLQDIGARRGLLMAGGVVDELKAA 262
Query: 235 FRILTDFRKGKFGWISLERP 254
I+ +FR+G G +L+ P
Sbjct: 263 QLIIKEFREGLLGRYTLDLP 282
>gi|227551190|ref|ZP_03981239.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|293377188|ref|ZP_06623396.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|293570273|ref|ZP_06681342.1| GTP-binding protein [Enterococcus faecium E980]
gi|424765200|ref|ZP_18192603.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|425054012|ref|ZP_18457527.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430840980|ref|ZP_19458901.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|431034777|ref|ZP_19491654.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|431102201|ref|ZP_19496812.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|431738013|ref|ZP_19526963.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|431740438|ref|ZP_19529353.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|431751528|ref|ZP_19540216.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|431756373|ref|ZP_19545005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|431761625|ref|ZP_19550187.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
gi|227179658|gb|EEI60630.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|291609680|gb|EFF38941.1| GTP-binding protein [Enterococcus faecium E980]
gi|292644208|gb|EFF62310.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|402417222|gb|EJV49526.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|403036936|gb|EJY48269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430494711|gb|ELA70946.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|430563492|gb|ELB02701.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|430570429|gb|ELB09390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|430598049|gb|ELB35809.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|430603302|gb|ELB40832.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|430615309|gb|ELB52267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|430620227|gb|ELB57029.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|430624317|gb|ELB60967.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
Length = 293
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 31 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 90
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 91 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 150
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 151 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 210
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 211 DLAIYGLDFFARYYSGRIS---DRYGLPIEQE------EKLAPELLMDITAKRGYKEDYD 261
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 262 RGSELVVHDIRQGKLGRYTLDR 283
>gi|257887693|ref|ZP_05667346.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257896187|ref|ZP_05675840.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430852787|ref|ZP_19470518.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|431070188|ref|ZP_19494196.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|431582091|ref|ZP_19520040.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
gi|257823747|gb|EEV50679.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257832752|gb|EEV59173.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430541621|gb|ELA81766.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|430567698|gb|ELB06773.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|430593981|gb|ELB31951.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
Length = 286
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLPIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|389573273|ref|ZP_10163348.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
gi|388426970|gb|EIL84780.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
Length = 282
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D W +F QG + +
Sbjct: 24 IDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADKADPRMTKEWQAHFEAQGVRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + ++KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 AINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRY--------KIDMDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +++ G ++ N D
Sbjct: 204 DVAVYALRFLEEHYP----ERLKKRYDLAEIPEDTVELFDAIGTKRGCLMSGGFINYD-- 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ I+ D R KFG ++ E+P
Sbjct: 258 KTTEIIIRDIRTEKFGPLTFEKP 280
>gi|154497937|ref|ZP_02036315.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC
29799]
gi|150272927|gb|EDN00084.1| ribosome biogenesis GTP-binding protein YlqF [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 296
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 17/268 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V EV DARIP+S+ +P +D +G + R++VLNR D A W +F +G V+
Sbjct: 24 VDIVAEVIDARIPVSSRNPDIDTLVGEKPRLIVLNRADQADPAGNRLWGDWFRSRGWSVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + G G + S + K + D + ++KG + R +RA IVG PNVGKS+ IN++ +R
Sbjct: 84 ETDAKEGKGINQFSPVVKEVLKDKIQQWQAKGQVGRPIRAMIVGVPNVGKSTFINKVARR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A+ +PGVTR +WV L+ LD+PGI+ + D + LA + + D
Sbjct: 144 KSAKASDKPGVTRGKQWVAVDAGLDLLDTPGILWPKFEDPQTGLHLAFTGAVKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-------DMDGTC-GKTFVQKLALH---LFNG- 228
+A L++ LA AL RYKI + +G G +++ A L +G
Sbjct: 204 TLACHLLEELA---AAYPAALTERYKIAVPERSEEEEGLAYGYALLEQAARKRGFLISGG 260
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
DT + +L +FR GK G +LE+P
Sbjct: 261 EPDTERMGKVLLDEFRAGKLGRFTLEKP 288
>gi|332638612|ref|ZP_08417475.1| GTP-binding protein YlqF [Weissella cibaria KACC 11862]
Length = 290
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 140/258 (54%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +D+ LGN+ R+LV+ + D+ AW YF QG +V+
Sbjct: 26 VDIVFELVDARIPVSSRNPELDEVLGNKPRLLVMTKTDLADPERTKAWTKYFVDQGLEVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +D KG+ + +RA + G PNVGKS+L+N L+ +
Sbjct: 86 ALDTRGHKTPQIMTKAARKVLADKWAALEEKGVKDKPIRALVAGIPNVGKSTLLNHLVTK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + DQ LA+ I ++ +
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFEDQRVGEHLAMTGAIKDQLINQD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A ++ + T A+ RY + D T V+ L L F D +AA R
Sbjct: 206 DIALATLKFMR---TYNPDAIVARYHLADDAWETNTDVELLLLITQKLGFKDDYDRAAER 262
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R+GK G ++E P
Sbjct: 263 MLLDLRRGKLGTYTVEMP 280
>gi|225572003|ref|ZP_03780867.1| hypothetical protein RUMHYD_00297 [Blautia hydrogenotrophica DSM
10507]
gi|225040536|gb|EEG50782.1| ribosome biogenesis GTP-binding protein YlqF [Blautia
hydrogenotrophica DSM 10507]
Length = 280
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++E+ DARIPLS+ +P +D+ N+ R+++LN+ D+ + W YF QG V
Sbjct: 24 IDLIVELVDARIPLSSRNPDIDELGKNKSRLILLNKSDLADEKGNSQWEAYFKAQGFHVH 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ L + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 KINARSGAGVKAINGLIQVACKEKIERDRRRGIKNRPVRAMVVGIPNVGKSTFINTFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA+ I + ++
Sbjct: 144 ACTKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQEVGVRLAVIGSIKDDILNLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ--KLALHLFNG---DTHQAAF 235
+++ L+ L R G+ A RY+++ G+ + Q K L G D +AA
Sbjct: 204 ELSLSLIHYL-REAYPGVLA--ERYQLEEKGSDVEVLEQVAKNRNCLLRGQELDYSKAAG 260
Query: 236 RILTDFRKGKFGWISLERP 254
+L +FR GK G I+LE P
Sbjct: 261 ILLDEFRSGKIGRITLEMP 279
>gi|326204814|ref|ZP_08194668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
gi|325985026|gb|EGD45868.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
Length = 292
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IE+ DARIP S+ +P ++ + N+ R++ N+ D+ W ++A+QG I
Sbjct: 24 VDVIIELLDARIPFSSRNPEINSLINNKPRLIAFNKSDLADDRISRQWIKWYAEQGIDCI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ A+ L S+ + ++KG L VR +VG PNVGKSS IN+++ R
Sbjct: 84 LINSINGKGLNEIKARARELMSEKIERNKAKGKLFTPVRTMVVGIPNVGKSSFINKIVGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R ++E LD+PGI+ + DQ + LA I + D+
Sbjct: 144 ATAVTGDRPGVTRGKQWIRINSEIELLDTPGILWPKFEDQEVGMNLAFTGAIKD---DIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-------KTFVQKLALHLFNG--DTH 231
D + +++L R+ T L R+K++ + +T +K + G D
Sbjct: 201 DTGEVAMELLHRLSKTYNTELCTRFKLEPETIKDMKPLELLETVGRKRGCIVSKGEIDYS 260
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + +L +FR GK G ++LE+P
Sbjct: 261 RISAIVLDEFRGGKIGRVTLEKP 283
>gi|365840102|ref|ZP_09381314.1| ribosome biogenesis GTP-binding protein YlqF [Anaeroglobus
geminatus F0357]
gi|364562557|gb|EHM40395.1| ribosome biogenesis GTP-binding protein YlqF [Anaeroglobus
geminatus F0357]
Length = 280
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 142/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DARIP+S+T+P++ LG + ++VLN+ D+ A W Y+ +G VI
Sbjct: 15 IDAVIELVDARIPVSSTNPMIAALLGEKPSVIVLNKADLADPAALELWKAYYRNRGRHVI 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G +L + +A R++GL R VR I+G PNVGKS+LINRL R
Sbjct: 75 ALNSKDGRGIKQLIQAVHKMAEPKLAHWRARGLKNRPVRTIILGIPNVGKSTLINRLAGR 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A RPG T+ +WV L+ LD+PG++ ++ DQ +A +LA I + +D+
Sbjct: 135 NVAKTADRPGETKGKQWVHLSDSLDLLDTPGVLWPKLEDQRSAKRLAATGAISDAVFDMQ 194
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKID-MDGTCGKTFV---QKLALHLFNG--DTHQA 233
+V L+ L+ R P AL R+K+D +D T V + + G D +
Sbjct: 195 EVVTELISELSVRYP----EALARRFKLDRLDEDPALTVVRIGRNRGCVVAGGTVDMEKT 250
Query: 234 AFRILTDFRKGKFGWISLERP 254
I+ ++R+G+ G ISL+ P
Sbjct: 251 YKLIIKEYREGRIGAISLDWP 271
>gi|313892688|ref|ZP_07826271.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442779|gb|EFR61188.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
Length = 301
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDLADPKATKEWTEFFTKQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQRAAARLAMT---GAVSDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 205 DLEHVMKQLLNHLLTNTPNILVERYKLKEEEMTDVDTILESIGRRRGCLVSGGVVDFDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDK 284
>gi|304436822|ref|ZP_07396788.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370194|gb|EFM23853.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 296
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 134/261 (51%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + +G + R++VLN+ D+ AW Y+A + +
Sbjct: 34 VDVVVELLDARIPMSSANPVLREIVGGKPRLIVLNKADLADEYVTRAWVKYYAAEWLSAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G GT +L + A K G PRA R I+G PNVGKSSLINRL
Sbjct: 94 PVDAVKGKGTKELVQAIARCAKPKTDKLVQHGAKPRAARCMILGIPNVGKSSLINRLSGG 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R G LE LD PGI+ + DQ AA+ LA I + YDV
Sbjct: 154 TKTKVENRPGVTRAKQWIRLGAQLELLDMPGILWPKFEDQQAALHLAFTGAINDNVYDVG 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
V +L+ L +L RY++D G + + L G D +A
Sbjct: 214 SVVLLLLNRLREDTP---QSLCTRYRLDEPLPEGIELLDAIGRKRGCLRAGGKIDYEKAE 270
Query: 235 FRILTDFRKGKFGWISLERPP 255
IL+DFR G+ G ISL+ P
Sbjct: 271 QVILSDFRSGRLGRISLDAVP 291
>gi|251797463|ref|YP_003012194.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
gi|247545089|gb|ACT02108.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
Length = 296
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 143/266 (53%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ IE+ DARIPLS+ +P++D+ LG + R++VLN+ D+ W YF +G + +
Sbjct: 24 IDIAIELLDARIPLSSRNPMVDEILGGKPRLIVLNKLDLADPRVTEQWIDYFKYEGHETV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G + AK + + ++ +KG+ PRA+R IVG PNVGKS+LINRL R
Sbjct: 84 AVDSSTGTRVGDIPVKAKEILQEKIDRQLAKGMNPRAIRGLIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ D++ LD+PGI+ + D+ +LA+ I E+ +V
Sbjct: 144 NIAITGDKPGVTKGQQWIKTTFDMDLLDTPGILWPKFEDELVGYRLAMTGAIREQILNVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---------LFNG--- 228
D+A V+ LA ALQ R+K+D T + + + L +G
Sbjct: 204 DIAFFAVRELAE---RYWPALQERFKLDKAPTDPSESDEVVRIMEDIGRRRGCLVSGGHV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R G G I+LE P
Sbjct: 261 DLEKASGIILRELRSGNLGRITLEAP 286
>gi|255281040|ref|ZP_05345595.1| ribosome biogenesis GTP-binding protein YlqF [Bryantella
formatexigens DSM 14469]
gi|255268488|gb|EET61693.1| ribosome biogenesis GTP-binding protein YlqF [Marvinbryantia
formatexigens DSM 14469]
Length = 294
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 18/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IE+ DARIP S+ +P +D+ NR R+L+LN+ D+ A AW +F +G +
Sbjct: 24 IDVIIELVDARIPQSSRNPDIDELGKNRARVLLLNKADLADAAGCEAWIEHFRAKGYYAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G L R+ + + + R +G+L R VRA + G PNVGKS+ IN R
Sbjct: 84 ALDSRRKNGMNALGRVLQEACREKIERDRKRGILNRPVRAMVAGIPNVGKSTFINTYAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W+R K++E LD+PGI+ + DQ ++LA+ I + +
Sbjct: 144 ACAKTGNRPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLALIGSIRDEILNTE 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGT---------CGKTFVQKLALHLFNGDT 230
++A L+ L R P + L RY +GT G+ ++K + D
Sbjct: 204 ELALELITFLKTRYPGL----LAQRYACAEEGTPVAVLDEIAVGRGCIRKGS----EPDY 255
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+A+ +L DFR GK G I+LE P
Sbjct: 256 EKASALLLDDFRSGKLGRITLEFP 279
>gi|20807903|ref|NP_623074.1| GTPase [Thermoanaerobacter tengcongensis MB4]
gi|20516470|gb|AAM24678.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
Length = 277
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P D+ +K+I++LN+ED+ + W +F ++G + +
Sbjct: 23 VDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKEDLADERITDLWIKHFKEKGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L K + D+ + KGL PR +R I+G PNVGKS+ IN L+ R
Sbjct: 83 KVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPR-LRGMILGIPNVGKSTFINTLIGR 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ L W+R L+ LD+PG++ + D+ LAI I + ++
Sbjct: 142 KKAKTGDKPGVTKSLHWIRTPY-LDLLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEME 200
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
+VA LV +L R P L NRYK+D ++ + L +G D +A
Sbjct: 201 EVALFLVSILKNRYPDY----LINRYKLDKIWEEEIKIIEDIGKKRGCLVSGGEVDFVKA 256
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L DFRKG G ISLE P
Sbjct: 257 STVLLEDFRKGNLGRISLEEP 277
>gi|291534103|emb|CBL07216.1| Ras superfamily GTP-binding protein YlqF [Megamonas hypermegale
ART12/1]
Length = 269
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+RDARIP S+ +P++ +G + ++ LN+ D+ N W YF G V+
Sbjct: 37 VDVVIELRDARIPNSSANPILKDLIGKKPHLIALNKIDLADNNINNKWEEYFTSMGKSVV 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L +A LA K +KG+ PR R IVG PNVGKSSLINRL
Sbjct: 97 KINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNARVMIVGIPNVGKSSLINRLSGS 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +W++ +L+ LD+PGI+ + D + LA I + YD+
Sbjct: 157 ASLKTADKPGVTRAKQWIKIKNNLDLLDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIE 216
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
A IL L R+ ++ RYKID
Sbjct: 217 RAAEIL---LWRLKDDYAKNIKERYKID 241
>gi|304404227|ref|ZP_07385889.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
curdlanolyticus YK9]
gi|304347205|gb|EFM13037.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
curdlanolyticus YK9]
Length = 290
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 146/266 (54%), Gaps = 18/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ +E+ DARIPLS+ +P++D+ L N+ R++VL + D+ + AW F +G + I
Sbjct: 24 IDIAVELLDARIPLSSRNPMVDEILLNKPRMIVLGKSDLADPRETEAWIERFKYEGHECI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ LAK L + K+ SKG+ PRAVRA IVG PNVGKS+LINRL R
Sbjct: 84 AVDASTGTRVGEIPGLAKKLLHEKIAKQLSKGINPRAVRALIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + D +LA+ I E+ ++
Sbjct: 144 NIAITGDRPGVTKGQQWIKVGTEMELLDTPGILWPKFEDPIVGYRLAMTGAIREQILNIE 203
Query: 181 DVAAILV-QMLARIPTVGITALQNRYKIDM-------DGTCGKTFVQKLA------LHLF 226
D+A ++++R L +R+ ID+ D + ++ + +
Sbjct: 204 DIAFFATRELISRY----WDTLVDRFGIDVERPTDLEDSSEVVRIMEAIGRKRGCLISGG 259
Query: 227 NGDTHQAAFRILTDFRKGKFGWISLE 252
N D +++ IL + R GK G ++LE
Sbjct: 260 NVDLEKSSGIILREMRAGKLGRLTLE 285
>gi|253578397|ref|ZP_04855669.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850715|gb|EES78673.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 283
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 14/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ AW TYF +G V+
Sbjct: 26 IDLIIELVDARVPLSSRNPDIDELGKNKSRLILLNKSDLADERQNEAWKTYFQAKGFYVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ + + + + R +G+ R +RA +VG PNVGKS+ IN R
Sbjct: 86 KVDSRNGSGMKAINNVIQEACKEKIERDRRRGIKNRPIRAMVVGIPNVGKSTFINTFAGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ I+LA I + ++
Sbjct: 146 ACAKTGNKPGVTKGKQWIRLNKGVELLDTPGILWPKFEDQQVGIRLACVGSIKDDILNME 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTHQ 232
++A L+ L R GI A RY+I +GT + A+ G D +
Sbjct: 206 ELALWLIDYL-RENYKGILA--ERYQITEEGTSVEVLE---AIARARGCLKKQEELDYAK 259
Query: 233 AAFRILTDFRKGKFGWISLERPP 255
A+ + DFR GK G I+LE P
Sbjct: 260 ASLILFDDFRSGKMGRITLEWAP 282
>gi|417643565|ref|ZP_12293607.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri VCU121]
gi|445059836|ref|YP_007385240.1| GTPase YlqF [Staphylococcus warneri SG1]
gi|330685672|gb|EGG97313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU121]
gi|443425893|gb|AGC90796.1| GTPase YlqF [Staphylococcus warneri SG1]
Length = 291
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 122/214 (57%), Gaps = 3/214 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W YF ++G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDMTNLKELEKWEQYFEEKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKNLKDVEKAAIQATKEKFDREKAKGLRPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGTSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG 214
+VA +Q + G L+ Y ID+D G
Sbjct: 204 EVAIYGLQFMIEKDLEG---LKKHYNIDVDEEAG 234
>gi|238019254|ref|ZP_04599680.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
gi|237863953|gb|EEP65243.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
Length = 306
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 33 VDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDLADPKATKEWTEFFTKQGITVL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 93 AIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVRIIILGIPNVGKSTLINSLAGS 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 153 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQRAAARLAMT---GAVSDDVY 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 210 DLEHVMKQLLNHLLTNTPNILVERYKLKEEEMTDVDTILESIGRRRGCLVSGGVVDFDKA 269
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 270 RRIILQDYRNTKLGTITLDK 289
>gi|254479482|ref|ZP_05092807.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
gi|214034586|gb|EEB75335.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
Length = 277
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P D+ +K+I++LN+ED+ + W +F ++G + +
Sbjct: 23 VDVVYEIVDARIPRSSRNPDFDEITKGKKKIMLLNKEDLADERITDLWIKHFKERGIEAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L K + D+ + KGL PR +R I+G PNVGKS+ IN L+ R
Sbjct: 83 KVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPR-LRGMILGIPNVGKSTFINTLIGR 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ L W+R L+ LD+PG++ + D+ LAI I + ++
Sbjct: 142 KKAKTGDKPGVTKSLHWIRTPY-LDLLDTPGVLWPKFEDKTVGFMLAITGAIKDEILEME 200
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
+VA LV +L R P L NRYK+D ++ + L +G D +A
Sbjct: 201 EVALFLVSILKNRYPDY----LINRYKLDKIWEEEIKIIEDIGKKRGCLVSGGEVDFVKA 256
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L DFRKG G ISLE P
Sbjct: 257 STVLLEDFRKGNLGRISLEEP 277
>gi|338813257|ref|ZP_08625386.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
gi|337274616|gb|EGO63124.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
Length = 281
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 134/255 (52%), Gaps = 3/255 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G++ R++ N+ D+ W F +QG V
Sbjct: 24 IDVVIELLDARIPESSANPMIQEIVGDKPRVIAFNKADLADSRHTEQWMARFKEQGLPVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
G G +L + + A++ K +KG+ R VRA ++G PNVGKSSLINRLL
Sbjct: 84 AIEAVSGKGLKQLIQYVEQAAAEKLAKWEAKGIKSRPVRAMVLGIPNVGKSSLINRLLGT 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A RPGVTR +W++ G LE LD+PG++ ++ DQA A KLA+ + + YD
Sbjct: 144 ATVKTANRPGVTRGQQWIKIGNRLELLDTPGVLWPKMDDQAVAFKLAVTGAVKDDVYDYD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
V LV L + + + +I D + L +G D +A +
Sbjct: 204 TVLKQLVDFLRQEYPGRLIERFSLTEIPADNQALLGLIGAKRGCLKSGGLVDYEKAGKIL 263
Query: 238 LTDFRKGKFGWISLE 252
L +FR GK G I+L+
Sbjct: 264 LQEFRNGKLGKITLD 278
>gi|390629742|ref|ZP_10257734.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
gi|390484914|emb|CCF30082.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
Length = 292
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +D+ LG + R+LV+ + D+ AW YF QG +V+
Sbjct: 26 VDIVFELVDARIPVSSRNPELDEVLGQKPRLLVMTKTDLADPERTKAWKKYFEAQGMEVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +D KG+ + +RA + G PNVGKS+L+N L+ +
Sbjct: 86 ALDTRGHKTPQIMTKAARKVLADKWAALEEKGVKDKPIRALVAGIPNVGKSTLLNHLVTK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + DQ LA+ I ++ +
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFEDQRVGEHLAMTGAIKDQLINQD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A ++ + I A RY + D T V+ L L F D +A+ R
Sbjct: 206 DIALATLKFMREYNPTAIIA---RYHLPEDAWENNTDVELLLLITQKLGFKDDYDRASER 262
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R+GK G ++E P
Sbjct: 263 LLIDLRRGKLGEYTVEMP 280
>gi|257869679|ref|ZP_05649332.1| GTP-binding protein [Enterococcus gallinarum EG2]
gi|257803843|gb|EEV32665.1| GTP-binding protein [Enterococcus gallinarum EG2]
Length = 289
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 139/262 (53%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++DQ L + R++++N+ D+ W YF KQG +
Sbjct: 25 VDIVFELVDARLPISSRNPMLDQILQQKPRLILINKADLADPQQTKLWEGYFRKQGFLAM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G + AK + + + +++GL PR +RA ++G PNVGKS+L+NRL+ +
Sbjct: 85 AINAQDSQGIKMIVPKAKEVLQEKIARDKARGLKPRPIRAMVIGIPNVGKSTLMNRLVGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+RFG +LE LD+PGI+ + D KLA+ I ++ +
Sbjct: 145 KIAQTGNKPGVTKGQQWLRFGTELELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
D+A + AR I RY + + Q LA L T + ++
Sbjct: 205 DIALFGLDFFARYYEGRIA---QRYSLSAEEE------QCLAPELLMKITEKRGYKDNYD 255
Query: 237 -----ILTDFRKGKFGWISLER 253
++ D R+GK G +L+R
Sbjct: 256 RGSELVVFDIRQGKLGRYTLDR 277
>gi|402818516|ref|ZP_10868099.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
gi|402503982|gb|EJW14514.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
Length = 292
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IE+ DAR+P+S+ +P+++ LGN+ R++++N+ D+ W YF +G VI
Sbjct: 24 IDVAIELLDARLPMSSRNPMINDILGNKPRLIIMNKCDLADPDVTAKWMKYFRNEGHAVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ A+ L + K+ +KG+ PR VRA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDASTGSNVSQIPGEARKLLEEKFQKQIAKGMKPRPVRALIVGIPNVGKSTLINKLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+R G ++E LD+PGI+ + DQ +LA I E +V
Sbjct: 144 TVAATGDRPGVTKGQQWIRVGSEMELLDTPGILWPKFEDQEVGYRLATTGAIREEILNVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGT----------CGKTFVQKLALHLFNG-- 228
D+A ++ +A + L R+ I D + +K + G
Sbjct: 204 DIAFYALKYVA---SHYWGRLSERFGITGDAIDVEDSDEVVRVMEDIGRKRGCLMGGGRV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G ++ E P
Sbjct: 261 DLEKASGIILRELRSGKLGRLTFEEP 286
>gi|430825090|ref|ZP_19443300.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
gi|430446482|gb|ELA56154.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
Length = 286
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 141/262 (53%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 24 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L K + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 84 AITAQESKGIKGLVPATKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 144 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + AR + I+ +RY + ++ +KLA L + D
Sbjct: 204 DLAIYGLDFFARYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 254
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 255 RGSELVVHDIRQGKLGRYTLDR 276
>gi|406579906|ref|ZP_11055131.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|406582129|ref|ZP_11057260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|406584370|ref|ZP_11059402.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|406589226|ref|ZP_11063668.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410935906|ref|ZP_11367780.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
gi|404454845|gb|EKA01745.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|404458533|gb|EKA04954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|404464179|gb|EKA09736.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|404471195|gb|EKA15747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410735705|gb|EKQ77612.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
Length = 307
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + + R+++LN+ D+ W YF KQG +
Sbjct: 45 VDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKADLADPQQTKLWQEYFRKQGHLAL 104
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G L AK + + ++G+ PRA+RA ++G PNVGKS+L+NRL+ +
Sbjct: 105 AITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRAMVLGIPNVGKSTLMNRLVGK 164
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + D+ KLA+ I ++ +
Sbjct: 165 KIAQTGNKPGVTKGQQWLRLGNELELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLD 224
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---------FNGDTH 231
D+A + A+ + I+ +RY + ++ +KLA L + D
Sbjct: 225 DLAIYGLDFFAQYYSGRIS---DRYGLSIEQE------EKLAPELLMDITAKRGYKEDYD 275
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + ++ D R+GK G +L+R
Sbjct: 276 RGSELVVHDIRQGKLGRYTLDR 297
>gi|347532233|ref|YP_004838996.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
gi|345502381|gb|AEN97064.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
Length = 285
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 15/265 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R++++N+ D+ W+ YF K+G V+
Sbjct: 24 IDLVIELVDARIPLSSRNPDIDELGRNKARLILMNKSDLADEEAGKLWSAYFQKKGYYVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G +++ + + + R +G++ R VRA +VG PNVGKS+ IN +
Sbjct: 84 SLDSRNRNGMKQVTAVVMEACKEKIERDRKRGIMNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ +KLA+ I + ++
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLKLALIGAIKDEILNID 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRY---KIDMDGTCGKTFV-------QKLALHLFNGD 229
+++ L+++L A P ALQ RY ++D+D T + ++ D
Sbjct: 204 ELSLELIKVLTAYYP----GALQARYGTEELDIDETAAPAEILRGIAENRRCVAKGGEID 259
Query: 230 THQAAFRILTDFRKGKFGWISLERP 254
+AA ++ +FR GK G I+LERP
Sbjct: 260 YSKAATLLIDEFRSGKLGRITLERP 284
>gi|269798034|ref|YP_003311934.1| GTP-binding protein HSR1-like protein [Veillonella parvula DSM
2008]
gi|416999180|ref|ZP_11939849.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
gi|269094663|gb|ACZ24654.1| GTP-binding protein HSR1-related protein [Veillonella parvula DSM
2008]
gi|333977333|gb|EGL78192.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
Length = 301
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDLADPKATKEWTEFFTKQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNYLLTNAPNILVERYKLKEEEMTDVDTILESIGRRRGCLVSGGIVDFDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|242242527|ref|ZP_04796972.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|420174987|ref|ZP_14681433.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|420191708|ref|ZP_14697619.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
gi|242233954|gb|EES36266.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|394244520|gb|EJD89862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|394265859|gb|EJE10506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
Length = 287
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + I+AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDISALKKHYNID 228
>gi|357050878|ref|ZP_09112074.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
gi|355380503|gb|EHG27639.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
Length = 289
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P+S+ +P++DQ L + R++++N+ D+ W YF KQG +
Sbjct: 25 VDIVFELVDARLPVSSRNPMLDQILQQKPRLILINKADLADPQQTKLWEGYFRKQGFLAM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G + AK + + + +++GL PR +RA ++G PNVGKS+L+NRL+ +
Sbjct: 85 AINAQDSQGIKMIVPKAKEVLQEKIARDKARGLKPRPIRAMVIGIPNVGKSTLMNRLVGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+RFG +LE LD+PGI+ + D KLA+ I ++ +
Sbjct: 145 KIAQTGNKPGVTKGQQWLRFGTELELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
D+A + AR I + ++ + ++ + + + + ++ D
Sbjct: 205 DIALFGLDFFARYYEGRIAQRYSLSAVEEQCLAPELLMKITEKRGYKDNYDRGSELVVFD 264
Query: 241 FRKGKFGWISLER 253
R+GK G +L+R
Sbjct: 265 IRQGKLGRYTLDR 277
>gi|289550966|ref|YP_003471870.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|385784593|ref|YP_005760766.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|418414268|ref|ZP_12987483.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180498|gb|ADC87743.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|339894849|emb|CCB54146.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|410876875|gb|EKS24772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 294
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + + W YF +QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKEMSKWEHYFVEQGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A D K ++KGL PRA+RA IVG PNVGKS+LIN+L ++
Sbjct: 84 AVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRAIRAMIVGIPNVGKSTLINKLARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 NIAQTGNKPGVTKQQQWIKVGKVLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
DVA ++ L + I L+ Y I ++
Sbjct: 204 DVAIFVLNFLIQ---HDIETLRQHYHISVE 230
>gi|147678051|ref|YP_001212266.1| GTPase [Pelotomaculum thermopropionicum SI]
gi|146274148|dbj|BAF59897.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
Length = 284
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 11/262 (4%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
DVVIEV DARIP S+ +P + + G++ R++VLN+ D+ W YF K G +
Sbjct: 25 DVVIEVLDARIPASSRNPDIGKIAGSKPRLIVLNKSDLADPVLTGRWMDYFKKAGYEAAD 84
Query: 62 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 121
+ G G ++ L + LA+ + G PRA R ++G PNVGKS LIN+L+ RR
Sbjct: 85 VDSVSGRGVREIPGLVEQLAAPKIASLANAGRRPRAARCMVLGIPNVGKSFLINKLVGRR 144
Query: 122 MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVAD 181
+ PGVTR +WVR +LE +D+PGI+ R+ D A LA+ + E +++
Sbjct: 145 VVKTGSSPGVTRGKQWVRLTGNLELMDTPGILRPRLDDPVTAFHLAVTGAVKEEVFNLEK 204
Query: 182 VAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL---HLFNG---DTHQAA 234
VA L++ ++ P A++ RY+++ + + + + +G D +++
Sbjct: 205 VAGRLLKWLMENYP----DAIRERYRLEDLPEEPEEMLNAIGARRGYFMSGGAVDLIRSS 260
Query: 235 FRILTDFRKGKFGWISLERPPR 256
+L +FR+GK G +LE+PP+
Sbjct: 261 RAVLKEFREGKMGRFTLEKPPQ 282
>gi|153812957|ref|ZP_01965625.1| hypothetical protein RUMOBE_03364 [Ruminococcus obeum ATCC 29174]
gi|149830904|gb|EDM85994.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
ATCC 29174]
Length = 285
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 8/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +DQ N+ R+++LN+ D+ AW YF K+G V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDQLGQNKSRLILLNKADLADERQNEAWKEYFQKRGFHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + + + + R +G+ R +RA + G PNVGKS+ IN +
Sbjct: 84 KVDSRNGSGMKTIQNVIQEACKEKIERDRRRGIKNRPIRAMVAGIPNVGKSTFINTFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W+R K++E LD+PGI+ + DQ I+LA I + ++
Sbjct: 144 ACAKTGNRPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQQVGIRLACVGSIKDDILNME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTC----GKTFVQKLALHLFNG-DTHQAAF 235
++A L++ L R G+ L+ RY I +GT GK + L D +A+
Sbjct: 204 ELALWLIEHL-RTNYSGL--LEKRYGISEEGTAVEILGKIARARGCLKKGEELDYVKASG 260
Query: 236 RILTDFRKGKFGWISLE 252
+ DFR GK G ++LE
Sbjct: 261 LLFDDFRGGKIGRVTLE 277
>gi|239636277|ref|ZP_04677279.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
gi|239597632|gb|EEQ80127.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
Length = 291
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++D+ ++ + W +F ++G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDITNLKELEKWEQFFEEKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKNLKDVEKAAIQATKEKFEREKAKGLRPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SVAQTGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMD 210
+VA +Q M+ R + L+N Y ID+D
Sbjct: 204 EVAIYGLQFMIER----DLDGLKNHYNIDVD 230
>gi|339624739|ref|ZP_08660528.1| GTP-binding protein YlqF [Fructobacillus fructosus KCTC 3544]
Length = 281
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 139/259 (53%), Gaps = 12/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P +D+ + + R+LVL + D+ + +AW YF +QG V+
Sbjct: 26 VDIVFELVDARLPLSSRNPEVDKLIEKKPRLLVLTKADLADPKETSAWKAYFERQGLAVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ AK + + + +KG+ R +R + G PNVGKS+L+N L+++
Sbjct: 86 VLDTRGPKTAQVMTKAAKQVLKEQLAAQEAKGIKNRPIRVMLAGIPNVGKSTLLNHLVQK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ + W++ LE LDSPG++ + DQ +LA+ + + +
Sbjct: 146 NVAITANKPGVTKKVAWLKTATGLEILDSPGVLWPKFEDQKIGQRLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG------TCGKTFVQKLALHLFNGDTHQAA 234
D A + MLA A+ +RY ++ D T +KL F D +AA
Sbjct: 206 DAA---LSMLAYFRNYNQQAIIDRYHLNADAFDLSDVDLLLTITEKLG---FKDDYDKAA 259
Query: 235 FRILTDFRKGKFGWISLER 253
R+L D R GK G +L+R
Sbjct: 260 VRMLNDLRSGKLGRYTLDR 278
>gi|154483563|ref|ZP_02026011.1| hypothetical protein EUBVEN_01267 [Eubacterium ventriosum ATCC
27560]
gi|149735473|gb|EDM51359.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
ventriosum ATCC 27560]
Length = 291
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 8/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D N+ R+++LN+ D+ D N W YF +G +
Sbjct: 36 IDLVIELLDARIPLSSRNPDIDDLGKNKARLVLLNKSDLADETDNNKWIQYFKDKGIIAL 95
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G +++ + + + + +G++ R VRA +VG PNVGKS+ IN R
Sbjct: 96 KINSKNKQGIKEINNAVQIACKEKIERDKKRGIINRPVRAMVVGIPNVGKSTFINAYAGR 155
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K+LE LD+PGI+ + +Q + LA I + DV
Sbjct: 156 AAAKTGNKPGVTKGKQWIKLNKNLELLDTPGILWPKFDNQTIGMHLAFIGSINDNILDVT 215
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTHQAAF 235
++A LV++LA T + RYKI+ + Q L D + +
Sbjct: 216 ELAYQLVKLLA---TTYPKVVVERYKIEGHEDPLQVMYQVAEVRGCKLKGNQPDLEKTSK 272
Query: 236 RILTDFRKGKFGWISLER 253
I+ DFR GK G I+L++
Sbjct: 273 IIMDDFRAGKLGRITLDK 290
>gi|339634080|ref|YP_004725721.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
gi|338853876|gb|AEJ23042.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
Length = 292
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 142/258 (55%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P +D LG++ R+LV+ + D+ + W TYF +G V+
Sbjct: 26 VDIVFELVDARIPLSSRNPELDDVLGDKPRLLVMTKTDLADPSRTKEWITYFETRGLAVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++ KG+ +A+RA + G PNVGKS+L+N L+ +
Sbjct: 86 ALDSRDRKTPQTITKAARKVLAEKWDHLLEKGVKDKAIRALVAGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + DQ LA+ I ++ +V
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A +++ + IT RYK+ D +T V L L F D ++A R
Sbjct: 206 DIALEVLKFMREYNPQSIT---ERYKLPSDIWDEETDVNILLLITQKLGFKDDYNRAGER 262
Query: 237 ILTDFRKGKFGWISLERP 254
IL D R+GK G ++E P
Sbjct: 263 ILLDLRRGKLGKYTIEVP 280
>gi|23098994|ref|NP_692460.1| hypothetical protein OB1539 [Oceanobacillus iheyensis HTE831]
gi|22777222|dbj|BAC13495.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 285
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 141/260 (54%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR PLS+ +P++ Q L N+ +++VL ++D+ W F + GT+ I
Sbjct: 24 VDFVIELVDARAPLSSQNPMLKQVLNNKPKLIVLMKKDLADQEVTKRWVDKFNEDGTQAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N K+ + AK L D K + KG+ PR RA IVG PNVGKS+LINRL +
Sbjct: 84 DVNVNHKGDIQKVIQQAKLLGQDKMEKLKRKGIQPRPARAMIVGIPNVGKSTLINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPG+T+ W++ KD E LD+PGI+ + ++ +LA I ++ +
Sbjct: 144 KIAKTGDRPGITKQQLWIKVKKDFELLDTPGILWPKFEEEVVGYRLAAIGTIKDQLLPLP 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAA 234
DV A +++ M P L++RY+++ + F + ++ L +G + + A
Sbjct: 204 DVTAFIIRYMSEHYP----NQLKDRYQLEEIEDMVEVFESIGRIRGALESGGQVNYDKVA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ D R G+ G I+LE+P
Sbjct: 260 DIVIRDLRVGRLGTITLEQP 279
>gi|425736836|ref|ZP_18855112.1| GTPase YlqF [Staphylococcus massiliensis S46]
gi|425483308|gb|EKU50460.1| GTPase YlqF [Staphylococcus massiliensis S46]
Length = 288
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 3/214 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D ++ ++ R+++LN+ DM ++ + W T+F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDFIQHKPRVVILNKMDMSNLKEMEKWNTFFEDKGAFPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ + A + + + KGL PRA+RA IVG PNVGKS+LIN++ KR
Sbjct: 84 AVDAKHGKNLQKVEQAAIEATKEKFAREKEKGLRPRAIRAMIVGIPNVGKSTLINKMAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ G L+ LD+PGI+ + DQ KL+I I + +
Sbjct: 144 AIAKTGNTPGVTKQQQWIKVGNALQLLDTPGILWPKFEDQTIGKKLSITGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG 214
DVA + L L N + I++D G
Sbjct: 204 DVAIYGLNFLIEHDK---ETLLNHFNIEVDEDAG 234
>gi|416124355|ref|ZP_11595351.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418328014|ref|ZP_12939144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
gi|319401465|gb|EFV89675.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365232401|gb|EHM73399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 287
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKKHYNID 228
>gi|294791914|ref|ZP_06757062.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
gi|294457144|gb|EFG25506.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
Length = 301
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDLADPKATKEWTEFFTKQGIIVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQCAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNYLLTNTPNILVERYKLKEEEMTDVDTILESIGRRRGCLVSGGIVDFDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|418615525|ref|ZP_13178467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
gi|374816964|gb|EHR81155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
Length = 287
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKKHYNID 228
>gi|404329157|ref|ZP_10969605.1| hypothetical protein SvinD2_03639 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 290
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 18/269 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ D+RIP ++ +PL+D+ + + R+L+LN+ DM AW +F G V
Sbjct: 24 IDVVIELVDSRIPAASRNPLVDEIVSGKPRLLLLNKTDMADPEATAAWKAHFENNGLTVH 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G GT ++ L + + KG P RA I+G PNVGKS+LINRL +
Sbjct: 84 LVNSQNGQGTSAIAGSVHRLTAARRKRMEEKGFRPHPDRALILGIPNVGKSTLINRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ A RPGVT +W++ GK +E LD+PGI+ + D + LA I E D
Sbjct: 144 KIAKIADRPGVTTAQQWIKVGKTMELLDTPGILWPKFEDPKTGMLLAATGAIKEELLDFQ 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALHLFNG----------- 228
++A L++ + R + A RY + D+ G Q L + L
Sbjct: 204 EIAFFLIKTMLRRYREPLAA---RYHLSDLPELTGNHDDQDLMIRLLETIGKNRGCLMSG 260
Query: 229 ---DTHQAAFRILTDFRKGKFGWISLERP 254
D + A I+ D+R K G ++LE P
Sbjct: 261 GRVDFDRTAEIIVRDYRSRKLGHLTLELP 289
>gi|57866703|ref|YP_188393.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis RP62A]
gi|417647399|ref|ZP_12297239.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|418411664|ref|ZP_12984930.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
gi|418612108|ref|ZP_13175154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|418626838|ref|ZP_13189434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|420163419|ref|ZP_14670166.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|420167601|ref|ZP_14674253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|420185451|ref|ZP_14691543.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|420211865|ref|ZP_14717221.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|420234404|ref|ZP_14738967.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|57637361|gb|AAW54149.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
gi|329724320|gb|EGG60832.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|374819990|gb|EHR84104.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|374831382|gb|EHR95124.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|394235108|gb|EJD80682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|394237629|gb|EJD83115.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|394254437|gb|EJD99406.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|394280375|gb|EJE24656.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|394304207|gb|EJE47614.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|410891247|gb|EKS39044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
Length = 287
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKRHYNID 228
>gi|226325141|ref|ZP_03800659.1| hypothetical protein COPCOM_02933 [Coprococcus comes ATCC 27758]
gi|225206489|gb|EEG88843.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus comes
ATCC 27758]
Length = 285
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 12/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ W YF +G +
Sbjct: 24 IDLVIELVDARVPMSSRNPDIDELGKNKARLILLNKADLADEKQTEEWIGYFRGKGYSAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSRKGGGIKSIQGVIQEACKEKTERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + ++
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQQVGLRLAFIGSIKDEIMNLE 203
Query: 181 DVAAILVQ-MLARIPTV-----GITALQNRYKI-DMDGTCGKTFVQKLALHLFNGDTHQA 233
++AA L+ M P V I QN Y + + V+ L DT +A
Sbjct: 204 ELAAELISFMQDAYPGVLAEKYTINEKQNSYSVLEAIAESRHCLVRGNEL-----DTAKA 258
Query: 234 AFRILTDFRKGKFGWISLE 252
A +L DFR G+ G I+LE
Sbjct: 259 AGMLLDDFRNGRLGRITLE 277
>gi|238923884|ref|YP_002937400.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
gi|238875559|gb|ACR75266.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
Length = 281
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 24 IDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGFFVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 SLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA+ I + +V
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVD 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A LV+ L A P + L RY++ + + ++ +A++ L G D +A
Sbjct: 204 ELAVELVKFLKAEYPGL----LAQRYEVSEENDIIE-LIRAVAVNRKCLSKGGEPDYSKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ DFR GK G I+LERP
Sbjct: 259 AALIIDDFRSGKLGHITLERP 279
>gi|291527942|emb|CBK93528.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
M104/1]
Length = 281
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 24 IDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGFFVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 SLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA+ I + +V
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVD 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A LV+ L A P + L RY++ + + + +A++ L G D +A
Sbjct: 204 ELAVELVKFLKAEYPGL----LAQRYEVSEENDIIE-LISAVAVNRKCLSKGGEPDYSKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ DFR GK G I+LERP
Sbjct: 259 AALIIDDFRSGKLGHITLERP 279
>gi|291524516|emb|CBK90103.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
DSM 17629]
Length = 281
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 24 IDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGFFVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 SLDARSKSGMKNITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PGI+ + DQ ++LA+ I + +V
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVD 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A LV+ L A P + L RY++ + + + +A++ L G D +A
Sbjct: 204 ELAVELVKFLKAEYPGL----LAQRYEVSEENDIIE-LISAVAVNRKCLSKGGEPDYSKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ DFR GK G I+LERP
Sbjct: 259 AALIIDDFRSGKLGHITLERP 279
>gi|212639583|ref|YP_002316103.1| ribosomal biogenesis GTPase [Anoxybacillus flavithermus WK1]
gi|338819263|sp|B7GGD6.1|RBGA_ANOFW RecName: Full=Ribosome biogenesis GTPase A
gi|212561063|gb|ACJ34118.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 284
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +PL+D+ + N+ RI++LN+ DM W +FA Q I
Sbjct: 27 IDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKADMADPDVTKQWVDFFAAQQIDAI 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +AK K +KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 87 AIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRAMRALIVGIPNVGKSTLINRLAG 146
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ + PGVT+ +W++ GK+LE LD+PGI+ + D+ KLA I + ++
Sbjct: 147 KHIAKTGDTPGVTKAQQWIKVGKELELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNL 206
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ LA L+ RY + D+ + F + K L G D +
Sbjct: 207 QDVAVYALRFLAAYYP---DRLKERYALADIPEDIVQLFDDIGKKRGCLAAGGVVDYDKV 263
Query: 234 AFRILTDFRKGKFGWISLER 253
A +L D R K G +S +R
Sbjct: 264 AELVLRDIRTEKLGRLSFDR 283
>gi|220928166|ref|YP_002505075.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
gi|219998494|gb|ACL75095.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
Length = 292
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IE+ DARIP S+ +P ++ + N+ R++ N+ D+ W ++A QG I
Sbjct: 24 VDVIIELLDARIPFSSRNPEINSLIKNKPRLVAFNKSDLADERISRQWIKWYADQGIDCI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ A+ L + + R+KG L VR +VG PNVGKSS IN+++ +
Sbjct: 84 LINSINGKGLNEIKAKARELMFEKIERNRAKGKLFTPVRTMVVGIPNVGKSSFINKIVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+R ++E LD+PGI+ + DQ + LA I + D+
Sbjct: 144 ATAVTGDRPGVTRGKQWIRISSEMELLDTPGILWPKFEDQEVGMNLAFTGAIKD---DIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-------KTFVQKLALHLFNG--DTH 231
D + + +L R+ L R+K++ + G +T +K + G D
Sbjct: 201 DTGEVAMALLYRLSKTYNNELCTRFKLEPESINGMEPLELLETVGRKRGCIISKGEIDYS 260
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + +L +FR GK G I+LE+P
Sbjct: 261 RISAIVLDEFRGGKIGRITLEKP 283
>gi|225019935|ref|ZP_03709127.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
gi|224947299|gb|EEG28508.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
Length = 356
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 14/265 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P++D+ + + RI++LN+ D+ + W YF G +
Sbjct: 89 VDVVVEIIDARIPASSRNPVLDKLIQGKPRIVLLNKCDVADLNFTRRWVEYFQSVGIAAL 148
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G ++ L + + ++ KR SKG+ R VRA +VG PNVGKS+ IN++
Sbjct: 149 AIDCQTGKNLKQVQPLIRQVLVELIQKRASKGMSGRIVRAMVVGIPNVGKSTFINKMAGG 208
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +WV D++ LD PG++ + D + LA + + DV
Sbjct: 209 KRAKVEDRPGVTRGKQWVHIDNDIDLLDMPGVLCPKFEDPQVGVHLAWTGAVKD---DVV 265
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL------HLFNG---DTH 231
DV + + +L + L R+K + T G ++L L +G +T
Sbjct: 266 DVELLAMNLLEYLSENYPKLLTERFK--LGDTSGMEPFERLEEVGRKRGMLISGGEVNTE 323
Query: 232 QAAFRILTDFRKGKFGWISLERPPR 256
+AA +L ++R GK G ++LERPPR
Sbjct: 324 RAAIVVLDEYRGGKLGKLTLERPPR 348
>gi|218283551|ref|ZP_03489541.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
gi|218215819|gb|EEC89357.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
Length = 281
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 146/260 (56%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDAR+P ++ +P++DQ + N+ R+++L+++D W + KV+
Sbjct: 25 VDFVIEIRDARMPDASKNPMLDQLIQNKPRLILLSKKDKADKELTKQWVNALETENQKVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +L + + L ++ K++ +G+ PRA+RA + G PNVGKS+ IN KR
Sbjct: 85 ALDFIHENFSKQLIKASNELCINLIEKQKRRGMKPRALRAMVCGIPNVGKSTFINTFAKR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ G+ LE LD+PG++ + DQ +KLA+ I ++ ++
Sbjct: 145 KAAQTGDRPGVTKSLQWIKVGQTLELLDTPGVLWPKFEDQQVGLKLALLGSIKDQVVNMD 204
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL---HLFNG--DTHQAA 234
D+A + +++ P + + Y +++ T +T +Q +A+ +L G D ++
Sbjct: 205 DLALFACEYLMSEKPEI----FDSVYHVEIANTPYET-LQNIAIKRGYLLKGEIDENRLM 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+ D R+ K G I+ E+P
Sbjct: 260 LSFVKDIRENKCGLITWEKP 279
>gi|404370923|ref|ZP_10976238.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_2_43FAA]
gi|226912956|gb|EEH98157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_2_43FAA]
Length = 289
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D+ + R+++LN+ D+ W + + + KVI
Sbjct: 25 VDAVIEIRDARIPRSSANPDIDKLCEGKPRVILLNKSDLSESKVTKMWMNHLSSENVKVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ L + + + ++KGL+ +R +VG PNVGKS+ IN++ K
Sbjct: 85 EVNCLTGKGLNQIKPTLDLLLKEKHDRLKAKGLVKIQMRVMVVGIPNVGKSTFINKMAKN 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E LD+PG++ + D+ A+ LA I + D+
Sbjct: 145 NIAKTGDRPGVTKSKQWIKTKMDIEMLDTPGVLWPKFEDEKTALNLAFTGAIKDEIMDIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+++ LV+ R+ + L+ RYKI+ + +A L G D ++ A
Sbjct: 205 ELSFNLVK---RLQSFYGDKLKERYKIEEINEDPLETLNSIARKRGCLVKGGEIDYNRIA 261
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G ISLERP
Sbjct: 262 VILLDEFRGGKIGNISLERP 281
>gi|374296156|ref|YP_005046347.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
gi|359825650|gb|AEV68423.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
Length = 290
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 138/261 (52%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P D N+ +I+VLN+ D+ ++W+ ++ +G I
Sbjct: 24 VDVVIELLDARIPISSKNPDFDDIFKNKPKIIVLNKSDLADEKISSSWSKWYNSKGYANI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + G L + L D + + KG + R +R IVG PNVGKSSLIN++ R
Sbjct: 84 FIDSIKGKNINLLKNKMQDLMKDKIERDKLKGRISRPIRTMIVGIPNVGKSSLINKIAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+ ++ LD+PGI+ + + I LAI I + D
Sbjct: 144 ASAVTGDRPGVTRGKQWINVNDKIQLLDTPGILWPKFENPEVGINLAITGAIKDDVIDTV 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A+IL + LAR+ L RYK+ ++G G +Q + + +G D +
Sbjct: 204 ELASILFEKLARLYP---KNLMERYKLTSIEGKTGFELLQIAGKNRGCIISGGEIDMLRI 260
Query: 234 AFRILTDFRKGKFGWISLERP 254
A +L + R GK G I+LE+P
Sbjct: 261 ASIVLDELRGGKIGKITLEKP 281
>gi|90961694|ref|YP_535610.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227890782|ref|ZP_04008587.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|301300771|ref|ZP_07206955.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385840372|ref|YP_005863696.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|90820888|gb|ABD99527.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227867191|gb|EEJ74612.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|300214493|gb|ADJ78909.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|300851621|gb|EFK79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 285
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P + + L ++ I+VL + D+ A+ W Y+ G I
Sbjct: 25 VDIVLELVDARLPESSRNPQLAEVLQDKPSIIVLTKMDLADPAETKRWINYYESMGQPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + ++ + LA + R+ KG+ + +RA +G PNVGKS+L+N L+K+
Sbjct: 85 AVNSNSGNLKIIEKKIKEILADKLQ-SRKEKGIQNQKLRAMCIGIPNVGKSTLLNHLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ GKDL+ LD+PGI+ + D KLA+ I + Y
Sbjct: 144 NVAQTGNRPGVTKAQQWLKAGKDLQLLDTPGILWPKFEDPLVGKKLALTGAIKDTLYAKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA V+ AL RY++ +++ T +T + F D +A+ R+
Sbjct: 204 DVALYAVEHFIH---TNPDALAQRYRLTQSELEDTTVETLLAITRNMGFKEDYDRASERL 260
Query: 238 LTDFRKGKFGWISLERPP 255
+ + RKGK G +L++PP
Sbjct: 261 IFEIRKGKLGRYTLDKPP 278
>gi|418634023|ref|ZP_13196421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|420177366|ref|ZP_14683702.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|420179849|ref|ZP_14686125.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|420189835|ref|ZP_14695794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|420204167|ref|ZP_14709727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
gi|374838015|gb|EHS01572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|394247750|gb|EJD92992.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|394252327|gb|EJD97364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|394259950|gb|EJE04776.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|394274181|gb|EJE18606.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
Length = 287
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA I+G PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMILGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKKHYNID 228
>gi|377830814|ref|ZP_09813805.1| GTP-binding protein [Lactobacillus mucosae LM1]
gi|377555262|gb|EHT16950.1| GTP-binding protein [Lactobacillus mucosae LM1]
Length = 290
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P +D G++ R+L+L + D+ W YF G V+
Sbjct: 25 VDIVFELVDARVPYSSQNPEVDLAAGDKPRLLILTKTDLADPEVTKEWLQYFKDHGQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++ AK + ++ ++KG+ RA+RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRARSVAKTVTNAAKQVLAEKLANEQAKGMKKRAIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + + + LA+ I + +
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFATEKEGLMLALSGAIKDSLFAKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTHQ 232
DVA +Q L +T L+ RY + D+D + T +K+ F D +
Sbjct: 205 DVALFALQYLR---ANRLTELKQRYHLTDADVDESVTDPDLLLTVTKKMG---FRDDYDR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+ R++ D RKGK G ISLE+P
Sbjct: 259 GSERLIFDLRKGKLGTISLEKP 280
>gi|418637478|ref|ZP_13199798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
gi|374838986|gb|EHS02518.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
Length = 294
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + + W YF +QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKEMSKWEHYFVEQGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A D K ++KGL PRA+RA IVG PNVGKS+LIN+L ++
Sbjct: 84 AVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRAIRAMIVGIPNVGKSTLINKLARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 NIAQTGNKPGVTKQQQWIKVGKVLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
DVA + L + I L+ Y I ++
Sbjct: 204 DVAIFGLNFLIQ---HDIETLRQHYHISVE 230
>gi|333979537|ref|YP_004517482.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823018|gb|AEG15681.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 282
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +PL+ + +G + ++VLN+ED+ W +F +G +
Sbjct: 24 VDVVIELLDARIPASSRNPLIGKIVGGKPHLVVLNKEDLADPHLTRLWLDWFRGRGLPAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ L + L D ++G P R +VG PNVGKS IN L
Sbjct: 84 AVDSTRRKGVAEVPMLVRRLVEDKMASLAARGRRPPNPRCMVVGIPNVGKSFFINALAGS 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ RPGVTR +WVR +++E LD+PG++ + D +KLA I E +DV
Sbjct: 144 RVTRTGNRPGVTRGQQWVRLAREVELLDTPGVLWPKFDDPRVGLKLAATGAIKEEVFDVE 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKL-ALHLFNG-----DTHQA 233
+VAA L + +L P +L+ RY+++ G V+ + A G D+++A
Sbjct: 204 EVAAWLAEWLLQSFP----ASLKERYRLEELPAQGHRVVELIGARRGLVGPGGVVDSYRA 259
Query: 234 AFRILTDFRKGKFGWISLERPP 255
A +L +FR+G+ G +L+ PP
Sbjct: 260 AVHLLKEFREGRLGRFTLDVPP 281
>gi|242373536|ref|ZP_04819110.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242348899|gb|EES40501.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 309
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +YF QG +
Sbjct: 39 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDMTNLKELEKWESYFKDQGFYPV 98
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + + KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 99 AVDAKHGKNLKNVEAEAIKATKEKFDREKEKGLKPRAIRAMIVGIPNVGKSTLINKLANR 158
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 159 SIAQTGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLD 218
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA + + G L+ Y ID+D
Sbjct: 219 EVAIYGLNFMIEHDLEG---LKQHYNIDVD 245
>gi|418630372|ref|ZP_13192854.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
gi|374837913|gb|EHS01471.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
Length = 287
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA I+G PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMILGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKKHYNID 228
>gi|302670912|ref|YP_003830872.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
gi|302395385|gb|ADL34290.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
Length = 293
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 141/273 (51%), Gaps = 21/273 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DARIP S +P +D+ N+ R+++LN+ D+ W Y+ K G V+
Sbjct: 24 IDIIIELTDARIPASGRNPDIDELGKNKFRLIILNKADLADPQVTREWKEYYQKTGAFVM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G K+ L ++ + + +G++ R +RA + G PNVGKS+ IN+L +
Sbjct: 84 EMNSKTGNEAAKVKDLVTKACAEKIERDKKRGIVGRPIRAMVAGIPNVGKSTFINKLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+ GK+++ LD+PGI+ + D+ + LA+ + + + D
Sbjct: 144 ASAKTGNKPGVTKGKQWIALGKNMQLLDTPGILWPKFEDETVGLHLALIGSMNDENLDTT 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMD----------GTCGKTFVQKLALH--LFN 227
++A L+++L P A+ +Y I D T + +A++ F
Sbjct: 204 ELACELIKILKESYP----NAISEKYNISEDQIAELSNEQYATPSSAVLSAIAINRKCFK 259
Query: 228 G----DTHQAAFRILTDFRKGKFGWISLERPPR 256
D +AA +L DFR G+ G IS+ERP +
Sbjct: 260 QGAQPDMDRAAALLLDDFRNGRLGKISIERPEK 292
>gi|317473603|ref|ZP_07932892.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
gi|316898893|gb|EFV20918.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
Length = 284
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 131/259 (50%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP + +P +DQ N+ R+++LN+ D+ W YF +G V
Sbjct: 24 IDIVIELVDARIPFGSRNPDIDQLAQNKSRLILLNKTDLADSRKTELWEQYFKDRGFFVG 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + + + R +G+ R VRA I G PNVGKS+ IN L +
Sbjct: 84 KVNSQKGTGVKAVQGIVMEACREKIERDRKRGIKNRPVRAMIAGIPNVGKSTFINSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQ + LA+ I E +
Sbjct: 144 ACTKTGNKPGVTKGKQWIKLNKNIELLDTPGILWPKFEDQTVGLHLALIGSIKEEILNQE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG-----DTHQAAF 235
++A L+ L + GI A RY+++ D K Q A D +AA
Sbjct: 204 EMAMELIPFLVK-EYPGILAA--RYRVEEDKNTLKILEQIAANRNCKEKGNQLDYEKAAH 260
Query: 236 RILTDFRKGKFGWISLERP 254
+L ++R GK G I+LE P
Sbjct: 261 ILLEEYRNGKLGKITLEVP 279
>gi|315658467|ref|ZP_07911339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
gi|315496796|gb|EFU85119.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
Length = 295
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + + W YF +QG +
Sbjct: 25 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKEMSKWEHYFVEQGFYPV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A D K ++KGL PRA+RA IVG PNVGKS+LIN+L ++
Sbjct: 85 AVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRAIRAMIVGIPNVGKSTLINKLARK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 145 NIAQTGNKPGVTKQQQWIKVGKVLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
DVA + L + I L+ Y I ++
Sbjct: 205 DVAIFGLNFLIQ---HDIETLRQHYHISVE 231
>gi|340355018|ref|ZP_08677712.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
gi|339622815|gb|EGQ27328.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
Length = 284
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 116/192 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++D+ + + R+L+LN+ D+ W YF ++G + +
Sbjct: 24 VDIVFELIDARLPLSSRNPMIDEVIQQKPRLLILNKMDLADEVQTKRWIAYFEERGFRTV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +++ AK + + + +G+ P A+RA IVG PNVGKS+LINRL K+
Sbjct: 84 AINSFEGKGLQTVTKAAKEILQPKFDRMKQRGIRPGAIRAMIVGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+++GK+LE LD+PG++ + D KLA+ I + ++
Sbjct: 144 NIAKTGNKPGVTKAQQWIKYGKELELLDTPGVLWPKFEDPEVGFKLALTGAIKDSVLNME 203
Query: 181 DVAAILVQMLAR 192
++A ++ L+
Sbjct: 204 ELAVYGLRFLSE 215
>gi|294793774|ref|ZP_06758911.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
gi|294455344|gb|EFG23716.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
Length = 301
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKIDLADPKATKEWTEFFTKQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLLSTVERLSKPIIDRWVAKGIRSRSVRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNYLLTNTPNILVERYKLKEEEMTDVDTILESIGRRRGCLVSGGIVDFDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|167747196|ref|ZP_02419323.1| hypothetical protein ANACAC_01910 [Anaerostipes caccae DSM 14662]
gi|167654156|gb|EDR98285.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes caccae
DSM 14662]
Length = 291
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 131/259 (50%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP + +P +DQ N+ R+++LN+ D+ W YF +G V
Sbjct: 31 IDIVIELVDARIPFGSRNPDIDQLAQNKSRLILLNKTDLADSRKTELWEQYFKDRGFFVG 90
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G + + + + R +G+ R VRA I G PNVGKS+ IN L +
Sbjct: 91 KVNSQKGTGVKAVQGIVMEACREKIERDRKRGIKNRPVRAMIAGIPNVGKSTFINSLAGK 150
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQ + LA+ I E +
Sbjct: 151 ACTKTGNKPGVTKGKQWIKLNKNIELLDTPGILWPKFEDQTVGLHLALIGSIKEEILNQE 210
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG-----DTHQAAF 235
++A L+ L + GI A RY+++ D K Q A D +AA
Sbjct: 211 EMAMELIPFLVK-EYPGILAA--RYRVEEDKNTLKILEQIAANRNCKEKGNQLDYEKAAH 267
Query: 236 RILTDFRKGKFGWISLERP 254
+L ++R GK G I+LE P
Sbjct: 268 ILLEEYRNGKLGKITLEVP 286
>gi|377556018|ref|ZP_09785741.1| GTP-binding protein [Lactobacillus gastricus PS3]
gi|376168756|gb|EHS87484.1| GTP-binding protein [Lactobacillus gastricus PS3]
Length = 290
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 137/263 (52%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P +D G++ R+L++ + D+ W +F QG V+
Sbjct: 25 VDLVFELVDARVPYSSQNPEVDLAAGDKPRLLIMTKTDLADPEVTKEWLAFFKNQGQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + K++ AK + +D +KG+ RA++A VG PNVGKS+L+N L+ +
Sbjct: 85 ALDSREQQVAKKVTNAAKKVLADKMANEAAKGMQKRAIKAMCVGVPNVGKSTLLNHLVHK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A RPGVT +W+R +LE LD+PG++ + + LA+ I + Y
Sbjct: 145 NVAATANRPGVTTGQQWLRSSAELELLDTPGVLWPKFATTKQGTMLALSGAIKDSLYPKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK---------TFVQKLALHLFNGDTH 231
DVA + L + + L+ RY++ DG + T QKL + D
Sbjct: 205 DVAIFALDYLRQY---RMAELKKRYRL-TDGEVDEAVSTPELLLTITQKLGMR---DDYE 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ RI+ D RKGK G +LERP
Sbjct: 258 RASERIIFDMRKGKLGTFTLERP 280
>gi|420161425|ref|ZP_14668190.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|420161562|ref|ZP_14668326.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745100|gb|EJF33996.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745402|gb|EJF34286.1| GTP-binding protein [Weissella koreensis KCTC 3621]
Length = 292
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P +D LG++ R+LV+ + D+ + W TYF +G V+
Sbjct: 26 VDIVFELVDARIPLSSRNPELDDVLGDKPRLLVMTKTDLADPSRTKEWITYFETRGLAVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++ KG+ +A+RA + G PNVGKS+L+N L+ +
Sbjct: 86 ALDSRDRKTPQTITKAARKVLAEKWDHLLEKGVKDKAIRALVAGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + DQ LA+ I ++ +V
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-------DMDGTCGKTFVQKLALHLFNGDTHQA 233
D+A +++ + IT RYK+ + D QKL F D ++A
Sbjct: 206 DIALEVLKFMREYNPQSIT---ERYKLPSGIWDEETDVNILLLITQKLG---FKDDYNRA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
RIL D R+GK G ++E P
Sbjct: 260 GERILLDLRRGKLGKYTIEVP 280
>gi|282850262|ref|ZP_06259641.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
gi|282579755|gb|EFB85159.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
Length = 301
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F KQG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVIFELVGQKPHIVLLNKVDLADPKATKEWTEFFTKQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R+VR I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLLSTVEHLSKPIIDRWVAKGIRSRSVRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK+LE LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNLELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-----KTFVQKLALHLFNG--DTHQA 233
D+ ++ Q+L + T L +RYK+ D ++ ++ + G D +A
Sbjct: 205 DLEHVIKQLLNYLLTNTPNILVDRYKLKEDEMTDVDRILESIGRRRGCLVSGGIVDFDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|386040552|ref|YP_005959506.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
gi|343096590|emb|CCC84799.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
Length = 286
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 16/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG
Sbjct: 24 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHVAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ SKG+ PR +RA IVG PNVGKS+LINR+ R
Sbjct: 84 PVDATTGTGLKEIPVQAKLLLKEKIDRQISKGMNPRPIRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAATGDRPGVTKAQQWIKTG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG-- 228
D+A + L + A+ R+++ D + + +K + G
Sbjct: 203 DIAFFATKYLVQ---YYWDAMAERFELTERPEDTENPDDVVNVMEAIGRKRGCIVSGGRV 259
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G SLE P
Sbjct: 260 DLEKASKIILRELRAGKLGRFSLEAP 285
>gi|310641521|ref|YP_003946279.1| GTPase [Paenibacillus polymyxa SC2]
gi|309246471|gb|ADO56038.1| GTPase family protein [Paenibacillus polymyxa SC2]
Length = 289
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 16/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG
Sbjct: 27 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHVAF 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ SKG+ PR +RA IVG PNVGKS+LINR+ R
Sbjct: 87 PVDATTGTGLKEIPVQAKLLLKEKIDRQISKGMNPRPIRALIVGIPNVGKSTLINRMAGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 147 NIAATGDRPGVTKAQQWIKTG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG-- 228
D+A + L + A+ R+++ D + + +K + G
Sbjct: 206 DIAFFATKYLVQ---YYWDAMAERFELTERPEDTENPDDVVNVMEAIGRKRGCIVSGGRV 262
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G SLE P
Sbjct: 263 DLEKASKIILRELRAGKLGRFSLEAP 288
>gi|238916978|ref|YP_002930495.1| hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
gi|238872338|gb|ACR72048.1| Hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
Length = 303
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 23/274 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P +D+ N+ RI++LN+ D+ + W TYF +G +
Sbjct: 33 VDLVIEIVDARIPLSSRNPDIDKLAKNKARIVLLNKSDLADDTVTDEWITYFKDKGFYCL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N +L + ++ L S + R++G+ R+++A IVG PNVGKS+ IN R
Sbjct: 93 KLNSRLNVSNRAVNNLITVACSAKIERDRARGIKNRSIKAMIVGIPNVGKSTFINSFTGR 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+R +E LD+PGI+ +I D+ +LA+ I ++ ++
Sbjct: 153 KSAKTGNKPGVTKGKQWIRINGSVELLDTPGILWPKIEDRNVGERLAMIGSINDQILNIE 212
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD-----------------GTCGKTFVQKLAL 223
++A ++ L + L +RY I D C + +
Sbjct: 213 ELALETIKFLKKNYQ---PQLYSRYDITEDIFDNVDTETMMNPENAAALCIMEHIARKRG 269
Query: 224 HLFNG---DTHQAAFRILTDFRKGKFGWISLERP 254
+ G D + A IL DFR+GK G ISLERP
Sbjct: 270 CIKKGSDIDYEKCAACILDDFREGKIGTISLERP 303
>gi|418325821|ref|ZP_12937024.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
gi|365227567|gb|EHM68760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
Length = 287
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y I+
Sbjct: 204 EVAIYGLNFMIK---HDVSALKRHYNIN 228
>gi|433446047|ref|ZP_20410178.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
gi|432000792|gb|ELK21684.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
Length = 281
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +PL+D+ + N+ RI++LN+ DM W +FA Q I
Sbjct: 24 IDIVFELVDARIPISSRNPLIDEIVANKPRIILLNKADMADPDVTKQWIDFFAAQQIDAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +AK K +KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIDSQSGTGVKQMVAVAKEKLRPKFEKMIAKGIKRPRAMRALIVGIPNVGKSTLINRLAG 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ + PGVT+ +W++ GK+LE LD+PGI+ + D+ KLA I + ++
Sbjct: 144 KHIAKTGDTPGVTKAQQWIKVGKELELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNL 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG---DTHQA 233
DVA ++ L+ T L+ RY + D+ + F + K L G D +
Sbjct: 204 QDVAVYALRFLS---THYPDRLKERYALADIPEDIVQLFDDIGKKRGCLAAGGVVDYDKV 260
Query: 234 AFRILTDFRKGKFGWISLER 253
A +L D R K G +S +R
Sbjct: 261 AELVLRDIRTEKLGRLSFDR 280
>gi|375308199|ref|ZP_09773486.1| gtpase family protein [Paenibacillus sp. Aloe-11]
gi|375080530|gb|EHS58751.1| gtpase family protein [Paenibacillus sp. Aloe-11]
Length = 288
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 16/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG
Sbjct: 26 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHVAF 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ SKG+ PR +RA IVG PNVGKS+LINR+ R
Sbjct: 86 QVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPIRALIVGIPNVGKSTLINRMAGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 146 NIAATGDRPGVTKAQQWIKTG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG-- 228
D+A + + A+ R+++ D + + + +K + G
Sbjct: 205 DIAFFATKYFVQ---YYWDAMAERFELTERPEDTENPDDVVSVMEAIGRKRGCIVSGGRV 261
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G SLE P
Sbjct: 262 DLEKASKIILRELRAGKLGRFSLEAP 287
>gi|392971848|ref|ZP_10337240.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|403046828|ref|ZP_10902297.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
gi|392509561|emb|CCI60530.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|402763524|gb|EJX17617.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
Length = 286
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W YF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIQQKPRVVILNKKDMANLKELVKWENYFKGKGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + A ++ K + KGL PRA+RA IVG PNVGKS+LIN+L +
Sbjct: 84 AIDAKHGKGLKLVEQAAIKATTEKFEKEKQKGLKPRAIRAMIVGIPNVGKSTLINKLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK L+ LD+PGI+ + DQ KL+I I + +
Sbjct: 144 SVTKTGNTPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA ++ + G L+ YK+D+
Sbjct: 204 EVAIYGLEFMKAHDYEG---LKEHYKVDV 229
>gi|390454093|ref|ZP_10239621.1| GTPase [Paenibacillus peoriae KCTC 3763]
Length = 286
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 16/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG
Sbjct: 24 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHIAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ SKG+ PR +RA IVG PNVGKS+LINR+ R
Sbjct: 84 QVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPIRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAATGDRPGVTKAQQWIKTG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG-- 228
D+A + + A+ R+++ D + + + +K + G
Sbjct: 203 DIAFFATKYFVQ---YYWDAMAERFELTERPEDTENPDDVVSVMEAIGRKRGCIVSGGRV 259
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G SLE P
Sbjct: 260 DLEKASKIILRELRAGKLGRFSLEAP 285
>gi|27467839|ref|NP_764476.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis ATCC 12228]
gi|251810676|ref|ZP_04825149.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282876323|ref|ZP_06285190.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|293366791|ref|ZP_06613467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417656693|ref|ZP_12306376.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|417659010|ref|ZP_12308623.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|417909938|ref|ZP_12553671.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|417913333|ref|ZP_12557000.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|418605315|ref|ZP_13168640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|418607736|ref|ZP_13170959.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|418609824|ref|ZP_13172958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|418616549|ref|ZP_13179473.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|418622162|ref|ZP_13184918.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|418624370|ref|ZP_13187045.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|418628990|ref|ZP_13191506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|418664729|ref|ZP_13226195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|419768058|ref|ZP_14294195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770965|ref|ZP_14297027.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|420165219|ref|ZP_14671923.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|420169786|ref|ZP_14676364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|420172756|ref|ZP_14679254.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|420182914|ref|ZP_14689047.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|420187551|ref|ZP_14693571.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|420194018|ref|ZP_14699847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|420197136|ref|ZP_14702860.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|420202042|ref|ZP_14707637.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|420206436|ref|ZP_14711946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|420209477|ref|ZP_14714914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|420214276|ref|ZP_14719555.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|420216106|ref|ZP_14721328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|420220026|ref|ZP_14725016.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|420221964|ref|ZP_14726889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|420224827|ref|ZP_14729665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|420227035|ref|ZP_14731808.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|420229358|ref|ZP_14734064.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|420231716|ref|ZP_14736361.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|421607254|ref|ZP_16048500.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
gi|27315384|gb|AAO04518.1|AE016747_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805836|gb|EES58493.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295348|gb|EFA87875.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|291319092|gb|EFE59462.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736354|gb|EGG72626.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|329736649|gb|EGG72915.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|341652547|gb|EGS76335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|341655615|gb|EGS79339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|374402412|gb|EHQ73437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|374403853|gb|EHQ74848.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|374406160|gb|EHQ77063.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|374410175|gb|EHQ80936.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|374820627|gb|EHR84703.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|374827537|gb|EHR91399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|374827599|gb|EHR91460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|374834984|gb|EHR98615.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|383360979|gb|EID38362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362514|gb|EID39866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|394236386|gb|EJD81920.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|394241433|gb|EJD86847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|394243086|gb|EJD88460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|394249377|gb|EJD94590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|394255993|gb|EJE00929.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|394265943|gb|EJE10589.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|394266716|gb|EJE11341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|394270015|gb|EJE14538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|394278275|gb|EJE22592.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|394278924|gb|EJE23236.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|394283641|gb|EJE27806.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|394287033|gb|EJE31007.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|394289995|gb|EJE33865.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|394292556|gb|EJE36298.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|394294230|gb|EJE37916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|394297536|gb|EJE41133.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|394299124|gb|EJE42675.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|394302258|gb|EJE45706.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|406657046|gb|EKC83439.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
Length = 287
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W YF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWEIYFKNEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKRHYNID 228
>gi|420199029|ref|ZP_14704713.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
gi|394272715|gb|EJE17165.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
Length = 287
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W TYF + +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWETYFKDESFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SITETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKKHYNID 228
>gi|295110186|emb|CBL24139.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
A2-162]
Length = 284
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 8/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +DQ N+ R+++LN+ D+ AW +F +G V+
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDQLGQNKSRLILLNKADLADERQNEAWKEFFQSKGFHVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + + + + R +G+ R +RA + G PNVGKS+ IN +
Sbjct: 84 KVDSRNGAGMKTIQNVIQEACKEKIERDRRRGIKNRPIRAMVAGIPNVGKSTFINTFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W+R K++E LD+PGI+ + DQ I+LA I + ++
Sbjct: 144 ACAKTGNRPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQEVGIRLAFVGSIKDDILNME 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAAF 235
++A L+ L T L+ RY I +G + + K L G D +A+
Sbjct: 204 ELALKLIDYLKEHYT---GLLEKRYGISEEGNAVEILGEIAKARGCLKKGEELDYTKASG 260
Query: 236 RILTDFRKGKFGWISLE 252
+ DFR GK G I+LE
Sbjct: 261 LLFDDFRSGKIGRITLE 277
>gi|429765770|ref|ZP_19298050.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
gi|429185623|gb|EKY26597.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
Length = 317
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D+ + RI++LN+ D+ AW + + KV+
Sbjct: 25 VDAVIEIRDARIPRSSANPDIDKLCSGKPRIILLNKSDLTESKVTKAWIKELSNENVKVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ L + + + ++KGL+ +R +VG PN GKS+ IN++ K
Sbjct: 85 EVNCLRGQGLQQIKPALLELLKEKHERAKAKGLVKFMMRVMVVGVPNCGKSTFINKMAKN 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ R GVT+ +W++ D+E LD+PG++ + D+ A+ LA I + D+
Sbjct: 145 NIAKTGDRAGVTKSKQWIKTAFDMEMLDTPGVLWPKFEDETTALNLAFTGAIKDEIMDIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQAA 234
++A +LV+ R+ L+ RYKI+ D + + L +G D ++ A
Sbjct: 205 ELAYMLVK---RLQKYYPNELKARYKIEEVFEDPLETLDAIARKRGCLVSGGAIDYNRIA 261
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G ISLERP
Sbjct: 262 VMLLDEFRGGKIGNISLERP 281
>gi|303231444|ref|ZP_07318175.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
gi|302513881|gb|EFL55892.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
Length = 301
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F +QG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDLADPKATKEWTEFFTQQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R++R I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK++E LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNMELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + + T T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNHLLTNTPNILIERYKLKEEEMTDVDTILESIGRRRGCLVSGGVVDLDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|417910786|ref|ZP_12554502.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
gi|341654974|gb|EGS78710.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
Length = 287
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W YF +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDYVIKQKPRVVILNKKDMTNLKELEKWEIYFKNEGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID 208
+VA + + + ++AL+ Y ID
Sbjct: 204 EVAIYGLNFMIK---HDVSALKRHYNID 228
>gi|312143697|ref|YP_003995143.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
gi|311904348|gb|ADQ14789.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
Length = 285
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 12/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IEV DAR P ST +P + + ++KR+ VLN++D+ W YF +G V+
Sbjct: 23 VDLIIEVLDARAPYSTQNPDLQSLVKDQKRVAVLNKKDLADPELNQKWLNYF--KGEAVL 80
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L L L ++ K KG R +RA I+G PNVGKS+LIN L
Sbjct: 81 L-NSITGEGVGELKNLLNGLHYEITNKLSKKGRKARRIRAMIIGIPNVGKSALINLLAGS 139
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVTR +WV K + LD+PGI+ SD+ A KLA+ G S DV
Sbjct: 140 KAANIADKPGVTRGRQWVNVSKKVRLLDTPGILWPSFSDEDTAYKLALT---GAVSNDVF 196
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
D +++ I + L+ Y++D + +A L G D ++AA
Sbjct: 197 DFELAAYKLIKFIKNIKAEKLEEFYQLDYLADHSYDILADIARKRGCLMTGGKVDRNRAA 256
Query: 235 FRILTDFRKGKFGWISLERP 254
++ D+R GK G I+LE+P
Sbjct: 257 GIVINDYRDGKLGRITLEKP 276
>gi|342218751|ref|ZP_08711355.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
135-E]
gi|341588879|gb|EGS32251.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
135-E]
Length = 283
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 11/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+T+P++ +G + I+VLN+ D+ + W Y+ +G I
Sbjct: 24 IDVVIELVDARIPKSSTNPMIGNLIGQKPAIIVLNKADLADPEEVKQWLQYYRSEGRIAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L + ++LA RS+GL R+VR I+G PNVGKS+L+NRL R
Sbjct: 84 PLNSKESKSIKRLIQEIRSLAEPKLAHWRSRGLKNRSVRTMILGIPNVGKSTLMNRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PG T+ +WV G L+ LD+PG++ ++ DQ +A +LA I + +D+
Sbjct: 144 NAAKTADKPGETKGKQWVHLGDQLDLLDTPGVLWPKLEDQVSAYRLAATGAISDTVFDME 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-----LHLFNGDTHQAA 234
V L++ + P ALQ R+ + T + + + L N +
Sbjct: 204 TVVFSLIEEVRLHYP----QALQARFSLTDLSTSREDIISTIGRKRGCLKKGNELDWEKT 259
Query: 235 FR-ILTDFRKGKFGWISLERPPR 256
++ IL +FR+GK+G ISL+ R
Sbjct: 260 YKVILKEFREGKWGLISLDHIDR 282
>gi|341820879|emb|CCC57194.1| GTP-binding protein [Weissella thailandensis fsh4-2]
Length = 290
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 140/258 (54%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P +D+ LG + R+L++ + D+ + W YF QG V+
Sbjct: 26 VDIVFELVDARIPLSSRNPELDEVLGEKPRLLIMTKTDLADPERTSIWREYFESQGLTVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+++ +D KG+ +A+RA + G PNVGKS+L+N L+ +
Sbjct: 86 SLDTRGNKTPQMITKAARSVLADKWRNLEEKGVQDKAIRALVAGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + +DQ LA+ I ++ ++
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFTDQRVGQHLAMTGAIKDQLINLD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A ++ IT RY ++ K+ V L L F D +A+ R
Sbjct: 206 DIALTTLKFFRDYHPEAITT---RYHLNESIWDEKSDVDILLLITEKLGFKDDYDRASER 262
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R+GK G ++E P
Sbjct: 263 LLLDLRRGKLGRYTVELP 280
>gi|260887867|ref|ZP_05899130.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|330838732|ref|YP_004413312.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|260862373|gb|EEX76873.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|329746496|gb|AEB99852.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
Length = 302
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 136/262 (51%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP ++++P++ + +G++ R++ LN+ D+ W +F + +
Sbjct: 34 VDVVVELLDARIPAASSNPMLREIIGDKPRVVALNKRDLADENMTRRWLEHFRAKKIPAV 93
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L L + A + SKG+ R R I+G PNVGKSSLINRL
Sbjct: 94 ALDSVSGKGMKELLTLIEREAKYRTERLVSKGVAARKARVMILGIPNVGKSSLINRLAGA 153
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +W+R G D++ LD+PGI+ + D +KLA + + YD+
Sbjct: 154 AKAKTADKPGVTRAKQWIRIGADVDLLDTPGILWPKFEDPRVGLKLAFTGAVNDEIYDLE 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM---DGTCG--KTFVQKLALHLFNG--DTHQA 233
VA +L+ L R LQ R+K + T G +K L G D +
Sbjct: 214 SVAHLLLATLRRDHQ---ERLQERFKFKEALPETTEGLMDAIGRKRGCLLKGGRIDFEKV 270
Query: 234 AFRILTDFRKGKFGWISLERPP 255
+L +FR GKFG ISL+ PP
Sbjct: 271 QHILLAEFRMGKFGKISLDVPP 292
>gi|158320502|ref|YP_001513009.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
gi|158140701|gb|ABW19013.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
Length = 280
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +DQ +G++ ++++LN+ D+ W YF + VI
Sbjct: 24 VDIVYELLDARIPISSRNPDVDQIIGDKPKVIILNKIDLADPRATAKWVEYFKRNSITVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G +L+ ++ D KG PR R IVG PNVGKSSLIN+L R
Sbjct: 84 PINTITGEGIRQLAEESERAIKDKMDALIKKGRRPRPARIMIVGIPNVGKSSLINKLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+R ++E LD+PGI+ + D+ A+ LA I + D
Sbjct: 144 KSTQTGDRPGVTKSKQWIRLKGNMELLDTPGILWPKFEDEEVALNLAFSGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNGDT---HQAA 234
+A L+++L I RYK+ + T + +A + + GD + +
Sbjct: 204 TLAYKLLEILWGNHKEKIV---ERYKLQDEYTTIIEIMDNIARNRGCILKGDEIDYSRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FR G+ G ISLE P
Sbjct: 261 NIILDEFRSGRIGQISLEYP 280
>gi|379795610|ref|YP_005325608.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872600|emb|CCE58939.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 294
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLKEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + +SKGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAMKATAEKFEREKSKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + I L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDIERLKAHYKIEV 229
>gi|336113791|ref|YP_004568558.1| HSR1-like GTP-binding protein [Bacillus coagulans 2-6]
gi|335367221|gb|AEH53172.1| GTP-binding protein HSR1-related protein [Bacillus coagulans 2-6]
Length = 270
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 122/208 (58%), Gaps = 5/208 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+++P++D+ + + RI +LN+ DM A W + T V+
Sbjct: 15 VDIVFELLDARIPVSSSNPMLDELIQQKPRIKLLNKADMADPAATARWLEILSGGNTHVL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G K+ +LA+ + + R+KG+ PRA+RA IVG PNVGKS+LINRL +
Sbjct: 75 AIDAQSGKGLDKMVKLAEQILQPKWERLRAKGIRPRAIRAMIVGIPNVGKSTLINRLAGK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ W++ GK +E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 135 NIAKTGNTPGVTKAQAWIKVGKTMELLDTPGILWPKFEDKETGYKLALTGAIKDTILNLQ 194
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI 207
DV+ ++ L + P AL+ RYK+
Sbjct: 195 DVSVFGLRFLEKHYP----GALKARYKL 218
>gi|323141924|ref|ZP_08076784.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413591|gb|EFY04450.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
Length = 286
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 137/262 (52%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+T+P++ LG++ +++ LN+ DM A + W G V
Sbjct: 29 VDVVVEMLDARIPRSSTNPMLQDILGSKPKVIALNKIDMADKAQTDVWLEKIKHSGLPVC 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G +L + A V K KG+ R VR IVG PNVGKS+LINRL+ +
Sbjct: 89 KIDCAPGKGVKQLISAVQLAAKPVIDKWLKKGVRNRPVRVMIVGIPNVGKSTLINRLVGK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
AA +PGVTR +WV K LE LD+PG++ + D + LA+ I E +D
Sbjct: 149 NKVMAADKPGVTRGQQWVTIAKGLELLDTPGVLWPKFDDPSVGFALAVTGAIKEDVFDRE 208
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMD-GTCGKTFVQKLALH---LFNG---DTHQ 232
+L+ +L R P LQN+Y + ++ G + K+A+ L +G D +
Sbjct: 209 QAVELLLDLLIRKYP----QDLQNKYAVSLEQGDDVNAVMAKIAVARGCLKSGGQLDIDK 264
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+L DFR G+ G +++ P
Sbjct: 265 VVQLVLRDFRAGRLGRFTIDEP 286
>gi|326791385|ref|YP_004309206.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
gi|326542149|gb|ADZ84008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
Length = 284
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR P ST +P +D+ N+ RI++LN+ D+ + W +++ KV+
Sbjct: 24 VDIVIELLDARAPYSTKNPDIDKLAQNKMRIIILNKADLADESITKEWIKWYSAHNVKVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
G G +++++A+ L + + R++G + R +RA IVG PNVGKS+ IN L+ +
Sbjct: 84 PIIATTGKGIKEVTKIAEDLLKEKIERDRARGRIYRPIRAMIVGIPNVGKSTFINSLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +WV+ K E LD PGI+ + DQ A LA IG + ++
Sbjct: 144 GTAKTGDKPGVTRGKQWVKIKKGFELLDMPGILWPKFEDQMVARHLAY---IGSINDNIL 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ---KLALHLFNG--DTHQAAF 235
D + + +L T+ ++ RYK+++ + F K L + G D + A
Sbjct: 201 DNRQLAIHLLEEGSTLFKAQIEQRYKMNLPVEAYEAFKAIGLKRGLIIAGGELDELRTAQ 260
Query: 236 RILTDFRKGKFGWISLERP 254
I+ +FR GK+G +++E P
Sbjct: 261 TIIDEFRSGKWGRVTVEVP 279
>gi|375088583|ref|ZP_09734921.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
gi|374561548|gb|EHR32887.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
Length = 290
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIPLS+++P +D+ +G++ R+ +L + D+ + W TY+ + V+
Sbjct: 24 VDVVFELLDARIPLSSSNPSLDEIIGDKPRVKILMKSDLADAQITSQWLTYYKENNIAVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + A + ++ KR KGL PRA+RA VG PNVGKS+LINR +
Sbjct: 84 PYNAKRNQDVSPILAAADDVLTEYKQKRIDKGLRPRAIRAVSVGIPNVGKSTLINRFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+++ LE LD+PGI+ + DQ LA+ I + +
Sbjct: 144 NIAQTGNRPGVTKAQQWIKYKNKLELLDTPGILWPKFEDQRVGKCLAVTGAIKDTLLHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
DVA M+A L RY D + L L + D + A
Sbjct: 204 DVALF---MMAYFTEHYPGRLAKRYNFDKKLETEMPLPELLMLITKKRGYRDDYERGAEM 260
Query: 237 ILTDFRKGKFGWISLERP 254
++ + RKG G SLE P
Sbjct: 261 MIYEVRKGLLGPFSLETP 278
>gi|374323443|ref|YP_005076572.1| GTPase family protein [Paenibacillus terrae HPL-003]
gi|357202452|gb|AET60349.1| gtpase family protein [Paenibacillus terrae HPL-003]
Length = 286
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 138/263 (52%), Gaps = 10/263 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG
Sbjct: 24 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHIAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ SKG+ PR +RA IVG PNVGKS+LINR+ R
Sbjct: 84 QVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPMRALIVGIPNVGKSTLINRMAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 SIAATGDRPGVTKAQQWIKTG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 202
Query: 181 DVAAILVQMLARIPTVGITAL-------QNRYKIDMDGTCGKTFVQKLALHLFNG--DTH 231
D+A + L + + A ++ D + + +K + G D
Sbjct: 203 DIAFFATKYLVQYYWDELAARFELTERPEDTENADEIVSVMEAIGRKRGCIVSGGRVDLE 262
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+++ IL + R GK G SLE P
Sbjct: 263 KSSKIILRELRAGKLGRFSLEAP 285
>gi|253733519|ref|ZP_04867684.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|417898523|ref|ZP_12542443.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
gi|253728573|gb|EES97302.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|341848556|gb|EGS89719.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
Length = 294
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + I L+ YKID+
Sbjct: 204 EVAIYGLNFLIQ---HDIERLKAHYKIDV 229
>gi|385781471|ref|YP_005757642.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|418572280|ref|ZP_13136492.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
gi|364522460|gb|AEW65210.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371984764|gb|EHP01873.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
Length = 294
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + I L+ YKID+
Sbjct: 204 EVAIYGLNFLIQ---HDIERLKAHYKIDV 229
>gi|241896009|ref|ZP_04783305.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313]
gi|241870740|gb|EER74491.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313]
Length = 290
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P +D LG++ R+L++ + D+ + W +YF QG V+
Sbjct: 26 VDIVFELVDARIPLSSRNPELDDVLGDKPRLLIMTKTDLADPERTSIWRSYFESQGLTVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +D KG+ +A+RA + G PNVGKS+L+N L+ +
Sbjct: 86 SLDTRGHKTPQIITKAARVVLADKWQNLEEKGVQDKAIRALVAGIPNVGKSTLLNHLVTK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + DQ LA+ I ++ ++
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFVDQRVGQHLAMTGAIKDQLINLD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID-------MDGTCGKTFVQKLALHLFNGDTHQA 233
D+A ++ IT RY ++ D T +KL F D +A
Sbjct: 206 DIALAALKFFRDYNAEAITT---RYHLNSSIWEEKSDVDILLTITEKLG---FKDDYDRA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ R+L D R+GK G +LE P
Sbjct: 260 SERLLIDLRRGKLGRYTLELP 280
>gi|374308409|ref|YP_005054840.1| ribosome biogenesis GTP-binding protein YlqF [Filifactor alocis
ATCC 35896]
gi|291166734|gb|EFE28780.1| ribosome biogenesis GTP-binding protein YlqF [Filifactor alocis
ATCC 35896]
Length = 288
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 136/253 (53%), Gaps = 12/253 (4%)
Query: 10 ARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 69
+RIP S+ +P +++ G++ +++LN+ED+ + W Y+ KQ VI NG G G
Sbjct: 36 SRIPKSSKNPDIEKIAGSKPIVILLNKEDLSDERETKKWIDYYKKQNHSVISYNGTTGDG 95
Query: 70 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 129
T +L + K + + +++GL RA+R I G PN GKS+LINRL KR+ R
Sbjct: 96 TKELLQEIKESFAPKLERLQNRGLKDRAIRIMIAGVPNSGKSTLINRLSKRKSTQTGDRA 155
Query: 130 GVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVA-AILVQ 188
GVT+ +WV+ +LE LD+PGI+ + DQ A+ LA I + D+ ++A A+L +
Sbjct: 156 GVTKGKQWVKLKGNLEMLDTPGILWPKFEDQRVALMLAFTGAIRDEVLDLEEIAFALLNE 215
Query: 189 MLARIPTVGITALQNRYKIDMDGTCGK-TFVQKLA------LHLFNGDTHQAAFRILTDF 241
+ R L+ RY I +D T + K+A L D + A IL DF
Sbjct: 216 LRGRYG----NCLEERYGITIDDTLETLEIMDKIAQKRGFVLRGQEIDYLRTAQAILNDF 271
Query: 242 RKGKFGWISLERP 254
R+GK G I+LE P
Sbjct: 272 REGKLGRITLETP 284
>gi|424780492|ref|ZP_18207365.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
gi|422842894|gb|EKU27341.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
Length = 285
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 7/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEV DAR+P S+ +P++D+ + + R+++LN+ D+ + W +F QG +
Sbjct: 25 VDIVIEVVDARLPKSSQNPMLDKIIQQKPRLVLLNKADLADPEETKKWQAHFEAQGMACL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N Q G G +++ + + +D +RR KG+ +A+RA I+G PNVGKS+++NRL+++
Sbjct: 85 AINAQEGKGIKQITPTCEKVLADKIQRRREKGMKDKAIRAMIIGIPNVGKSTVLNRLIRK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ K LE LD+PGI+ + ++ KLA+ I +
Sbjct: 145 NVAKTGNKPGVTKAQQWLKIDKKLELLDTPGILWPKFEEEETGYKLALTGAIKDDLLHFD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A ++ R AL RY + + + L L F D + + +
Sbjct: 205 DIALFGLEFFDRHYH---EALWKRYAFIPEEDRTLPYPELLMLMTEKRGFRDDYERMSKQ 261
Query: 237 ILTDFRKGKFGWISLE 252
+ D R K G +L+
Sbjct: 262 FIQDVRTNKLGRYTLD 277
>gi|401680005|ref|ZP_10811929.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
gi|400219132|gb|EJO50003.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
Length = 301
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F +QG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDLADPKATKEWTEFFTQQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R++R I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK++E LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNMELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-KTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNHLLTNTPNILIERYKLKEEEMADVDTILESIGRRRGCLVSGGVVDLDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|433449601|ref|ZP_20412465.1| GTP-binding protein YlqF [Weissella ceti NC36]
gi|429539115|gb|ELA07153.1| GTP-binding protein YlqF [Weissella ceti NC36]
Length = 292
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 142/258 (55%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P +D+ LG++ R++++ + D+ N W YF +QG V+
Sbjct: 26 VDIVFELVDARIPVSSRNPELDKVLGDKPRLMIMTKTDLADPERTNEWLRYFRQQGMNVV 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +D KG+ +++RA + G PNVGKS+L+N L+ +
Sbjct: 86 ALDTRNHKTPQMITKAARNVLADKWAALAEKGVKDKSIRALVAGIPNVGKSTLLNHLVTK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ L+W++ +LE LD+PG++ + D+ LA+ I ++ ++
Sbjct: 146 NVAITGDRPGVTKKLQWLKTPTNLELLDTPGVLWPKFEDKRVGQHLAMTGAIKDQLVNLD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A + ++ + A+ RY + D + V L L F D ++AA R
Sbjct: 206 DIALVTLKFMRE---YNPQAIVERYHLPEDAFETMSDVDVLLLITKKLGFKDDYNRAAER 262
Query: 237 ILTDFRKGKFGWISLERP 254
+L D R+GK G ++E P
Sbjct: 263 MLIDLRRGKLGPYTVEVP 280
>gi|303228991|ref|ZP_07315801.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
gi|302516405|gb|EFL58337.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
Length = 301
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F +QG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDLADPKATKEWTEFFTQQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R++R I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK++E LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNMELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-KTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNHLLTNTPNILIERYKLKEEEMADVDTILESIGRRRGCLVSGGVVDLDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|188588618|ref|YP_001920596.1| ribosomal biogenesis GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251780773|ref|ZP_04823693.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188498899|gb|ACD52035.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|243085088|gb|EES50978.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 285
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D L + RI++LN+ D+ W + K +V+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIDSLLQGKPRIILLNKSDLTEGKVTKDWIKHLTKDEVRVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + +L + + + R+KG++ R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E LD+PG++ R D+ A+ LA I + D+
Sbjct: 144 SIAKTGDRPGVTKSKQWIKTSIGIELLDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+++ LV+ L T L+ RYKID + +A L +G + ++ A
Sbjct: 204 ELSYKLVERLQSFYTAN---LKERYKIDEVSEDPLETLNAIARKRGTLVSGGEINYNRIA 260
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR G+ G ISLERP
Sbjct: 261 VILLDEFRAGRIGKISLERP 280
>gi|187934506|ref|YP_001885449.1| ribosomal biogenesis GTPase [Clostridium botulinum B str. Eklund
17B]
gi|187722659|gb|ACD23880.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
Length = 285
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D L + RI++LN+ D+ W + K KV+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIDSLLQGKPRIILLNKSDLTEGKVTKEWIKHLTKDDVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + +L + + + R+KG++ R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ +E LD+PG++ R D+ A+ LA I + D+
Sbjct: 144 SIAKTGDKPGVTKSKQWIKTSIGIELLDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNG---DTHQAA 234
+++ LV+ R+ + L+ RYKID D + K L +G + ++ A
Sbjct: 204 ELSYKLVE---RLQSFYKDNLKERYKIDEVSEDPLETLNAIAKKRGTLVSGGEINYNRIA 260
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR G+ G ISLERP
Sbjct: 261 VILLDEFRAGRIGKISLERP 280
>gi|384045195|ref|YP_005493212.1| GTPase family protein [Bacillus megaterium WSH-002]
gi|345442886|gb|AEN87903.1| GTPase family protein [Bacillus megaterium WSH-002]
Length = 288
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D W Y+ +QG +
Sbjct: 24 IDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDKADPRVTQQWLDYYKEQGIYAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +K L + + R+KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAIRAMIVGIPNVGKSTLINRLAS 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+++ RPGVT+ +W++ G +LE LD+PGI+ + D+ KLA I + ++
Sbjct: 144 KKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFEDETVGYKLATTGAIKDTILNM 203
Query: 180 ADVAAILVQMLA 191
DVA ++ L+
Sbjct: 204 QDVAVYALRFLS 215
>gi|28210940|ref|NP_781884.1| ribosomal biogenesis GTPase [Clostridium tetani E88]
gi|28203379|gb|AAO35821.1| GTP-binding protein [Clostridium tetani E88]
Length = 298
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 135/262 (51%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN+ D+ N W + + TKVI
Sbjct: 41 VDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSDLGEEKVTNEWIKALSGENTKVI 100
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G K+ L + K ++KGL R +VG PNVGKS+ INR+ K
Sbjct: 101 AINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKS 160
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PGI+ + D+ + LA I + ++
Sbjct: 161 SIAKTGDRPGVTKSRQWIKTKIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKD---EIM 217
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNG--DTHQ 232
D+ + + ++ R+ L+ RYK+D +D + +K L G D ++
Sbjct: 218 DIETLALNLIERLSEDYGENLKERYKLDKLEEIPLDNM--ENIAKKRGAILGRGEIDYNR 275
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A IL +FR GK G ISLE+P
Sbjct: 276 VAIMILDEFRGGKLGRISLEKP 297
>gi|358067000|ref|ZP_09153486.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
gi|356694849|gb|EHI56504.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
Length = 295
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 143/268 (53%), Gaps = 18/268 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+RDARIPL++++P + + R++VLN+ D+ + AWA YF KQG I
Sbjct: 24 VDIIIEMRDARIPLASSNPDIAVLGQGKARVIVLNKSDLSNEQINKAWAQYFRKQGCSCI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F++ + KL+ L + + + +G+ R VRA ++G PNVGKS+LIN + +
Sbjct: 84 FADSRQKGVVRKLTELLEEASKAKRERDLKRGISNRPVRAIVLGIPNVGKSTLINSIAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K +E LD+PG++ +I ++ A+KLA IG + V
Sbjct: 144 GSAKTGNKPGVTKGNQWIRLNKQVELLDTPGMLMPKIENEETAVKLAF---IGTVNDLVF 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDGTCGKTFVQKLALHLF--------- 226
D + +++L + I AL RY I D+D KT K +
Sbjct: 201 DSNELALELLEYLILNHIDALYERYGIGGLPEDVDSKDYKTGAHKYLADIARVRGCLKKG 260
Query: 227 -NGDTHQAAFRILTDFRKGKFGWISLER 253
D +A+ I++DFR G+ G ISLE
Sbjct: 261 GEYDYEKASNLIISDFRSGRLGRISLEE 288
>gi|429759493|ref|ZP_19291991.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
gi|429179454|gb|EKY20701.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
Length = 301
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 143/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP S+ +P++ + +G + I++LN+ D+ W +F +QG V+
Sbjct: 28 VDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDLADPKATKEWTEFFTQQGITVL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G KL + L+ + + +KG+ R++R I+G PNVGKS+LIN L
Sbjct: 88 AIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIRTIILGIPNVGKSTLINSLAGS 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A + G TR +WV+ GK++E LD+PG++ ++ DQ AA +LA+ G S DV
Sbjct: 148 AATRTANKAGHTRGQQWVKIGKNMELLDTPGVLWPKLEDQRAAARLAMT---GAISDDVY 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCG-KTFVQKLALH---LFNG---DTHQA 233
D+ ++ Q+L + T L RYK+ + T ++ + L +G D +A
Sbjct: 205 DLEHVIKQLLNHLLTNTPNILIERYKLKEEEMADVDTILESIGRRRGCLVSGGVVDLDKA 264
Query: 234 AFRILTDFRKGKFGWISLER 253
IL D+R K G I+L++
Sbjct: 265 RRIILQDYRNTKLGTITLDQ 284
>gi|28971414|emb|CAD70603.1| hypothetical protein [Bacillus megaterium]
Length = 361
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 122/210 (58%), Gaps = 6/210 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D W Y+ +QG +
Sbjct: 24 IDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDKADPRVTQQWLDYYKEQGIYAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +K L + + R+KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAIRAMIVGIPNVGKSTLINRLAS 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+++ RPGVT+ +W++ G +LE LD+PGI+ + D+ KLA I + ++
Sbjct: 144 KKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFEDETVGYKLATTGAIKDTILNM 203
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKID 208
DVA ++ L + P L+ RY ++
Sbjct: 204 QDVAVYALRFLTSHYP----EQLKQRYNLN 229
>gi|308068633|ref|YP_003870238.1| GTPase [Paenibacillus polymyxa E681]
gi|305857912|gb|ADM69700.1| Predicted GTPase [Paenibacillus polymyxa E681]
Length = 299
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 138/266 (51%), Gaps = 16/266 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P++D L + R+++LN+ D+ W YF +QG +
Sbjct: 37 IDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKADLADPVVSQQWIAYFKEQGHVAL 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ AK L + ++ KG+ PR +R IVG PNVGKS+LINR+ R
Sbjct: 97 PVDATTGTGLKEIPIQAKLLLKEKIDRQIRKGMNPRPMRGLIVGIPNVGKSTLINRMAGR 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 157 NIAATGDRPGVTKAQQWIKIG-EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVE 215
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI----------DMDGTCGKTFVQKLALHLFNG-- 228
D+A + L + AL R+++ D + +K + G
Sbjct: 216 DIAFFATKYLVQYYW---DALAERFELIERPEDTENPDEIVNVMEAIGRKRGCIVSGGRV 272
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ IL + R GK G SLE P
Sbjct: 273 DLEKASKIILRELRAGKLGRFSLEAP 298
>gi|385812304|ref|YP_005848695.1| GTP-binding protein [Lactobacillus fermentum CECT 5716]
gi|299783201|gb|ADJ41199.1| GTP-binding protein [Lactobacillus fermentum CECT 5716]
Length = 290
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P ST +P +D+ G++ R+L++ + D+ W YF + G V+
Sbjct: 25 VDIVFELVDARVPYSTQNPEIDRMAGDKPRLLIMTKTDLADPTTTAHWIDYFEQNGQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + D R+KG+ RA+RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKRAIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R DLE LD+PG++ + + Q A LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSADLELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID----MDGTCGKTFVQKLALHL-FNGDTHQAAF 235
DVA + L T L RY++ DG + ++ + D +A+
Sbjct: 205 DVAIFALDYLRAHRT---QELMTRYRLSPASLEDGVTTPDLLLEITKKMGMKDDYDRASE 261
Query: 236 RILTDFRKGKFGWISLERP 254
R++ + R+GK G +LE P
Sbjct: 262 RLIFEMRRGKLGTFTLEDP 280
>gi|317495782|ref|ZP_07954145.1| ribosome biogenesis GTP-binding protein YlqF [Gemella morbillorum
M424]
gi|316913959|gb|EFV35442.1| ribosome biogenesis GTP-binding protein YlqF [Gemella morbillorum
M424]
Length = 292
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 151/259 (58%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR PLS+ + +D+ + ++K+I++ N+ D+ + W YF K+G V+
Sbjct: 24 VDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKIDLCDRTETAKWKNYFEKKGYTVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++ + K+ AK ++ ++ +KG+ PRA+R+ ++G PNVGKS+ IN+L+K+
Sbjct: 84 YTDAKNSNNLNKVIDKAKEELAEKIARQVAKGIKPRAIRSMVIGVPNVGKSTFINKLIKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ +W++ KD+E LD+PGI+ + +Q KL++ I + +
Sbjct: 144 NVANTANKPGVTKKQQWLKLNKDIELLDTPGILMPKFDNQEIGKKLSLIGSIKDDITPLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV-QKLALHLFN---GD-THQAAF 235
DV+ L+++L + + + N YKID+ F+ +K+A F GD + +
Sbjct: 204 DVSLYLIELLKQ---SYLENMNNLYKIDVTADGENVFIMEKIADKRFKKIGGDYDYDSTI 260
Query: 236 RIL-TDFRKGKFGWISLER 253
++L DFR KFG I+L+
Sbjct: 261 KLLIQDFRTQKFGLITLDN 279
>gi|229918611|ref|YP_002887257.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
gi|229470040|gb|ACQ71812.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
Length = 286
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 142/261 (54%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P S+ +P++D+ + R++VLN+ DM +AW ++ +V+
Sbjct: 24 IDVVIELVDARVPQSSRNPMVDEITAGKPRLIVLNKADMADPVVTDAWLRALKREEVEVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G +L A+ L + + + R KG P +RA I+G PNVGKS+LINRL R
Sbjct: 84 AVDAKHSKGLKQLITGAQKLMKEKHDRMREKGRNPGPIRALIIGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA I + ++
Sbjct: 144 NIAITGDRPGVTKRQQWIKMKGGEMELLDTPGILWPKFEDQLVGYRLAATGAIKDEILNL 203
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH--LFNG---DTHQA 233
D+A V+ L AR P L+ R+K++ G ++ + L +G D +A
Sbjct: 204 DDIALYTVRELHARYP----EQLKERFKLETLPEDGVELLELIGKKRGLISGGYVDFEKA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L + R K G ISLE P
Sbjct: 260 SELLLNELRHEKIGRISLETP 280
>gi|70726671|ref|YP_253585.1| ribosomal biogenesis GTPase [Staphylococcus haemolyticus JCSC1435]
gi|68447395|dbj|BAE04979.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 294
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W ++F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDMSNLNEMQKWESFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A A + + ++KGL PRA+RA IVG PNVGKS+LIN+L ++
Sbjct: 84 SVDAKHGKNLKGVETAAIAATKEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLARK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G+ L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 NIAQTGNKPGVTKQQQWIKVGQSLQLLDTPGILWPKFEDEIVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA +Q L G + YKID+
Sbjct: 204 EVAIYGLQFLINHDLEG---FKQHYKIDV 229
>gi|295706299|ref|YP_003599374.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
gi|338819264|sp|D5DJL5.1|RBGA_BACMD RecName: Full=Ribosome biogenesis GTPase A
gi|294803958|gb|ADF41024.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
Length = 288
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 122/210 (58%), Gaps = 6/210 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D W Y+ +QG +
Sbjct: 24 IDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDKADPRVTQQWLDYYKEQGIYAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +K L + + R+KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAIRAMIVGIPNVGKSTLINRLAS 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+++ RPGVT+ +W++ G +LE LD+PGI+ + D+ KLA I + ++
Sbjct: 144 KKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFEDETVGYKLATTGAIKDTILNM 203
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKID 208
DVA ++ L + P L+ RY ++
Sbjct: 204 QDVAVYALRFLTSHYP----EQLKQRYNLN 229
>gi|294500953|ref|YP_003564653.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
gi|294350890|gb|ADE71219.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
Length = 288
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D W Y+ +QG +
Sbjct: 24 IDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDKADPRVTQQWLDYYKEQGIYAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ Q G G ++ +K L + + R+KG+ PRA+RA IVG PNVGKS+LINRL
Sbjct: 84 AIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAIRAMIVGIPNVGKSTLINRLAS 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+++ RPGVT+ +W++ G +LE LD+PGI+ + D+ KLA I + ++
Sbjct: 144 KKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFEDEKVGYKLATTGAIKDTILNM 203
Query: 180 ADVAAILVQMLA 191
DVA ++ L+
Sbjct: 204 QDVAVYALRFLS 215
>gi|418324108|ref|ZP_12935359.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
gi|365227605|gb|EHM68797.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
Length = 289
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + ++ R+++LN++DM ++ + + W +F QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVVQHKPRVVILNKKDMANLNELDKWQEHFKAQGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ + A + + + KGL PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 AVDAKHGRSLKKVEQAATEATKEKFEREKEKGLKPRAIRAMIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ GK L+ LD+PGI+ + D+ KL+I I + +
Sbjct: 144 SIAKTGNTPGVTKQQQWIKVGKALQLLDTPGILWPKFEDETVGKKLSITGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA + L G L N Y +++D
Sbjct: 204 EVAIFGLNFLIEHDYEG---LCNHYNVEVD 230
>gi|329767414|ref|ZP_08258939.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
M341]
gi|328836103|gb|EGF85794.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
M341]
Length = 292
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 151/259 (58%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR PLS+ + +D+ + ++K+I++ N+ D+ A+ W YF +G V+
Sbjct: 24 VDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKIDLCDRAETAKWKNYFENKGYTVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++ + K+ AK ++ ++ +KG+ PRA+R+ ++G PNVGKS+ IN+L+K+
Sbjct: 84 YTDAKNSNNLNKVIDKAKEELAEKIARQVAKGIKPRAIRSMVIGVPNVGKSTFINKLIKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ +W++ KD+E LD+PGI+ + +Q KL++ I + +
Sbjct: 144 NIANTANKPGVTKKQQWLKLNKDIELLDTPGILMPKFDNQEIGKKLSLIGSIKDDITPLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV-QKLALHLFN---GD-THQAAF 235
DV+ L+++L + L N YKI+++ F+ +K+A F GD + +
Sbjct: 204 DVSLYLIELLKE---NYLENLNNLYKINVNSDDENVFIMEKVAEKRFKKIGGDYDYDSTI 260
Query: 236 RIL-TDFRKGKFGWISLER 253
++L DFR KFG I+L+
Sbjct: 261 KLLIQDFRTQKFGLITLDN 279
>gi|347750516|ref|YP_004858081.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
gi|347583034|gb|AEO99300.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
Length = 279
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 121/209 (57%), Gaps = 5/209 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P++D+ + + RI +LN+ DM A W + T V+
Sbjct: 25 VDIVFELLDARIPVSSANPMLDELIQQKPRIKLLNKADMADPAATARWLEKLSGGNTHVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G K+ +LA+ + + R+KG+ PRA+RA IVG PNVGKS+LINRL +
Sbjct: 85 AIDAQSGKGLDKMVKLAEQILEPKWERMRAKGIRPRAIRAMIVGIPNVGKSTLINRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ W++ GK +E LD+PGI+ + D+ KLA+ I + ++
Sbjct: 145 NIAKTGNTPGVTKAQAWIKVGKTMELLDTPGILWPKFEDKETGYKLALTGAIKDTILNLQ 204
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID 208
DV+ ++ L + P L+ RYK++
Sbjct: 205 DVSVFGLRFLEKHYPGT----LKARYKLE 229
>gi|258645843|ref|ZP_05733312.1| ribosome biogenesis GTP-binding protein YlqF [Dialister invisus DSM
15470]
gi|260403215|gb|EEW96762.1| ribosome biogenesis GTP-binding protein YlqF [Dialister invisus DSM
15470]
Length = 285
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 9/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIPLS+ +P++++ L + RI++LN+ D+ AW +Y+ ++G +
Sbjct: 24 VDVAAELLDARIPLSSANPMVEELLSGKPRIVILNKADLADPGMTKAWESYYKRKGVAAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G K RL K A + K + +GL R+VR I+G PNVGKS+LIN +
Sbjct: 84 SMSCGNGKDKKKFLRLIKEAAGPMLEKWKLRGLKTRSVRIMILGIPNVGKSTLINFISGT 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A PG TR +WVR + L+ LD+PG++ + DQ AA++LA I +D
Sbjct: 144 AAARTANTPGHTRGKQWVRLSQGLDLLDTPGVLWPKFEDQVAALRLAATGAIAGDVFDAD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV----QKLALHLFNG--DTHQAA 234
V L+++LAR AL+ +Y I+ + + ++ L G D +A
Sbjct: 204 TVVPELMRVLAR---TAPDALREKYGIEDAAADPQILLAQAGKRRGCILPGGAIDYARAQ 260
Query: 235 FRILTDFRKGKFGWISLERPP 255
IL DFR GK G I+L+ P
Sbjct: 261 TMILNDFRSGKLGRITLDAVP 281
>gi|295696076|ref|YP_003589314.1| ribosome biogenesis GTP-binding protein YlqF [Kyrpidia tusciae DSM
2912]
gi|295411678|gb|ADG06170.1| ribosome biogenesis GTP-binding protein YlqF [Kyrpidia tusciae DSM
2912]
Length = 290
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP ++ +P++ + +G++ R++V+ R+D+ W +FA+QG + +
Sbjct: 24 VDVVLELVDARIPSASRNPVLGELIGDKPRLIVMTRDDLADPDVSRRWIGFFARQGGRAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + LA+ + + +G+ R VR I+G PNVGKSSLINRL R
Sbjct: 84 AVDARSGRGLRGIGGAVRELAAPSVERWKKRGVRNRGVRVLILGIPNVGKSSLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
PGVTR +W+R + E LD+PGI+ + D + LA I E +
Sbjct: 144 SAAKTGDLPGVTRAQQWIRTSEGFELLDTPGILWPKFEDPETGLLLAATGAIKEEILPLE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ---KLALHLFNG--DTHQAAF 235
DVA L + R+ AL RY D+ G Q L + G + AA
Sbjct: 204 DVAVFLFK---RLQLTYPRALAGRYG-DLTGEPEDWLEQVGKGRGLLMAGGRVNVAAAAE 259
Query: 236 RILTDFRKGKFGWISLERPP 255
+ +FR G+ G ISLE+PP
Sbjct: 260 LVCREFRTGRLGRISLEKPP 279
>gi|417788285|ref|ZP_12435968.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|417810322|ref|ZP_12457001.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|418961322|ref|ZP_13513209.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
gi|334308462|gb|EGL99448.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|335349118|gb|EGM50618.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|380344989|gb|EIA33335.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
Length = 285
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 7/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P + + L ++ I+VL + D+ A+ W Y+ G I
Sbjct: 25 VDIVLELVDARLPESSRNPQLAEVLQDKPSIIVLTKMDLADPAETKKWINYYESMGQPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + ++ + LA + R+ KG+ + +RA +G PNVGKS+L+N L+K+
Sbjct: 85 AVNSNSGNLKIIEKKIKEILADKLQ-SRKEKGIQNQKLRAMCIGIPNVGKSTLLNHLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ GKDL+ LD+PGI+ + D KLA+ I + Y
Sbjct: 144 NVAQTGNRPGVTKAQQWLKAGKDLQLLDTPGILWPKFEDPLVGKKLALTGAIKDTLYAKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA V+ AL RY++ +++ T +T + F D +A+ R+
Sbjct: 204 DVALYAVEHFIH---TNPDALAQRYRLTQSEIEDTTVETLLAITRNMGFKEDYDRASERL 260
Query: 238 LTDFRKGKFGWISLERPP 255
+ + RKGK G +L++ P
Sbjct: 261 IFEIRKGKLGRYTLDKTP 278
>gi|291535187|emb|CBL08299.1| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis M50/1]
Length = 287
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPL++ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 24 IDLVIELVDARIPLASRNPDIDELGKNKARLILMNKSDLSDTGRNREWSDFFREKGYYVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 CLDARSKAGMKDVTNVVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ + LA+ I + ++
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQRVGLYLALIGAIKDEILNID 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTHQAA 234
+++ L++ +L+ PTV L+ RY ++ D Q K D +AA
Sbjct: 204 ELSLELIKILLSDYPTV----LKERYGVEEDAEPPVILGQIAENRKCISKGGELDYSKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ +FR GK G I+LERP
Sbjct: 260 ALLIDEFRSGKLGQITLERP 279
>gi|386319473|ref|YP_006015636.1| GTP-binding protein [Staphylococcus pseudintermedius ED99]
gi|323464644|gb|ADX76797.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
ED99]
Length = 290
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++ N++DM ++ + W +F ++G +
Sbjct: 24 VDVVFELVDARIPFSSRNPMIDEVIQQKPRVVIFNKKDMTNLKEMEKWYAFFREKGAYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + A + + + KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKGLKNVEEAAIEATREKFEREKVKGLKPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA ++ L AL +KID+
Sbjct: 204 EVAIYGLEFLIE---HDYEALLAHFKIDV 229
>gi|433655064|ref|YP_007298772.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293253|gb|AGB19075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 278
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +PL+D+ + N+KRI++LN+ D+ A W YF K G +
Sbjct: 23 VDIVYELIDARIPKSSRNPLIDELVKNKKRIILLNKADLSDSAVNKMWNEYFKKLGIASL 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N ++ L S++ ++R KG+ + +RA IVG PNVGKS+LIN L K
Sbjct: 83 NINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKAK-LRAMIVGIPNVGKSTLINSLSKT 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+R + LD+PGI+ + D+ I LA+ I + +
Sbjct: 142 KSAKTGNKPGVTKAKQWIRTPY-FDLLDTPGILWPKFEDEHVGIMLALTAAIKDELLNHE 200
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK---IDMDGTCGKTFVQKLALHLFNG---DTHQA 233
++A L+++L + P + L RYK ID+D + K+ L +G DT +
Sbjct: 201 ELAFSLLKILKQEYPEL----LMQRYKIQYIDIDLYDLLREIGKMRGCLSSGGHIDTERT 256
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ I+ DFR GK G ISLERP
Sbjct: 257 SKIIVEDFRTGKLGKISLERP 277
>gi|291539717|emb|CBL12828.1| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis XB6B4]
Length = 278
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPL++ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 15 IDLVIELVDARIPLASRNPDIDELGKNKARLILMNKSDLSDAGRNREWSDFFREKGYYVV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 75 CLDARSKAGMKDVTNVVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ + LA+ I + ++
Sbjct: 135 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQRVGLYLALIGAIKDEILNID 194
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTHQAA 234
+++ L++ +L+ PTV L+ RY ++ D Q K D +AA
Sbjct: 195 ELSLELIKILLSDYPTV----LKERYGVEEDAEPPVILGQIAENRKCISKGGELDYSKAA 250
Query: 235 FRILTDFRKGKFGWISLERP 254
++ +FR GK G I+LERP
Sbjct: 251 ALLIDEFRSGKLGQITLERP 270
>gi|417901371|ref|ZP_12545247.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|418599669|ref|ZP_13163149.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
gi|341845210|gb|EGS86412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|374396327|gb|EHQ67568.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
Length = 294
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + I L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---HDIERLKAHYKIEV 229
>gi|335357305|ref|ZP_08549175.1| GTP-binding protein [Lactobacillus animalis KCTC 3501]
Length = 284
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR+P S+ +P + L ++ I+VL + D+ + W Y+ K G +
Sbjct: 25 VDVVLELVDARLPESSRNPQLKDLLQDKPSIIVLTKMDLADPKETRKWIEYYEKMGQPAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + ++ + LA + ++++G+L + ++ +G PNVGKS+L+N L+K+
Sbjct: 85 AINSVQGSLKVIDKKIKEVLAEKL-ANKKARGILSQRIKVMCIGIPNVGKSTLLNHLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ GKDL+ LD+PGI+ + D KLA+ I + Y
Sbjct: 144 NVAQVGNRPGVTKSQQWLKAGKDLQLLDTPGILWPKFEDPIVGKKLALTGAIKDTLYAED 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKT--FVQKLALHL-FNGDTHQAAFR 236
DVA ++ A+ P AL RYKID + T +Q+L L F D +A+ R
Sbjct: 204 DVALYEIEEFSAKNP----QALIERYKIDEELLELPTVEVLQELTRKLGFKDDYARASER 259
Query: 237 ILTDFRKGKFGWISLERPPR 256
++ D RKGK G +L+ P+
Sbjct: 260 LIFDCRKGKLGRYTLDDVPK 279
>gi|257414218|ref|ZP_04745629.2| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis L1-82]
gi|257200806|gb|EEU99090.1| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis L1-82]
Length = 291
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPL++ +P +D+ N+ R++++N+ D+ W+ +F ++G V+
Sbjct: 28 IDLVIELVDARIPLASRNPDIDELGKNKARLILMNKSDLSDAGRNREWSDFFREKGYYVV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 88 CLDARSKAGMKDVTNVVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ + LA+ I + ++
Sbjct: 148 ACVKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQRVGLYLALIGAIKDEILNID 207
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTHQAA 234
+++ L++ +L+ PTV L+ RY ++ D Q K D +AA
Sbjct: 208 ELSLELIKILLSDYPTV----LKERYGVEEDAEPPVILGQIAENRKCISKGGELDYSKAA 263
Query: 235 FRILTDFRKGKFGWISLERP 254
++ +FR GK G I+LERP
Sbjct: 264 ALLIDEFRSGKLGQITLERP 283
>gi|150016065|ref|YP_001308319.1| ribosomal biogenesis GTPase [Clostridium beijerinckii NCIMB 8052]
gi|149902530|gb|ABR33363.1| GTP-binding protein, HSR1-related [Clostridium beijerinckii NCIMB
8052]
Length = 287
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +++ L + RI++LN+ D+ W Y K KV+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDLTDGKVTKEWINYLTKDDVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + AL + + + ++KG++ +R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKNIKPTLLALLKEKHDRLKAKGMVNITMRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G +E LD+PG++ R D A+ LA I + D+
Sbjct: 144 NIAKTGDRPGVTKSKQWIKTGIGIEMLDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNG--DT 230
++A LV+ ++ + L+ RYK +D GK K + G D
Sbjct: 204 ELALKLVE---KLQSNYEEKLKERYKLKEVFENPLDTLDAIGK----KRGTLISGGQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A +L +FR GK G I+LERP
Sbjct: 257 NRIAVILLDEFRGGKMGNITLERP 280
>gi|358060975|ref|ZP_09147663.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
gi|357256550|gb|EHJ06910.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
Length = 294
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 121/213 (56%), Gaps = 3/213 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W +F ++G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMSNLKEMEKWKDFFVEKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ A + + ++KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKNLKQVEAAAIKATKEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 TIAQTGNKPGVTKQQQWIKVGKLLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTC 213
+VA + L + LQ YKID++
Sbjct: 204 EVAIYGLNFLI---AHDLERLQQHYKIDVNADA 233
>gi|385799834|ref|YP_005836238.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
gi|309389198|gb|ADO77078.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
Length = 290
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 135/261 (51%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV- 59
+D+VIEV DARIP+S+ +P + + + + ++ VLN++D+ W YF+++ ++
Sbjct: 23 VDIVIEVADARIPVSSQNPDLKKLISKQTKVTVLNKKDLADPNYNQKWLQYFSEKNSEAA 82
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ N G G L + + K KG PR +RA I+G PNVGKS+LIN L
Sbjct: 83 VLINSLTGEGVSDLKSVLNNTYDQIAAKLAKKGRNPRRLRAMIIGIPNVGKSALINLLAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
++ +PGVTR +WV G+ + LD+PGI+ + SD+ A KLA+ I YD
Sbjct: 143 SKITTIGDKPGVTRGRQWVNVGQKIRLLDTPGILWPKFSDEDKAYKLALTGAISNDIYDA 202
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
A L++ + I + L + Y +D + +A L G D ++A
Sbjct: 203 ELAAYKLIKFIIEINS---QLLLDTYNLDFLEAHPYDILADIARKRGCLMTGGKVDRNRA 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ DF+ K G I+LE+P
Sbjct: 260 AKIIINDFQAAKLGKITLEKP 280
>gi|295115828|emb|CBL36675.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SM4/1]
Length = 292
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 137/262 (52%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL + +P +D+ + R+++LN+ D+ W ++F ++G VI
Sbjct: 24 IDLVIELVDARMPLGSRNPDIDELAKGKGRMVLLNKADLADERMNEQWTSWFKERGFHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ + + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 KINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R + LE LD+PGI+ + DQ + LA I + D
Sbjct: 144 ACAKTGNKPGVTKGNQWIRLNRTLELLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF-----VQKLALHLFNG---DTHQ 232
++AA L L T L+ RY++ + G + + + ++ L G D +
Sbjct: 204 ELAAELADFLM---THYREMLEARYQL-VPGEKYEPYQVLEQIARVRSCLLKGNELDLKK 259
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA L DFR GK G I+LE P
Sbjct: 260 AANLFLDDFRSGKLGRITLEFP 281
>gi|227499924|ref|ZP_03930017.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
gi|227218033|gb|EEI83306.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
Length = 280
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 141/259 (54%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ D+RIP+S+ +P++D+ + ++ RI+++N+ D+ W F ++G I
Sbjct: 26 VDVVLEIIDSRIPISSRNPMIDEIIADKPRIIIMNKSDLSDPEVNKKWIAKFKEEGIPAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ + AK L D K K + +R IVG PN GKS+ IN+L K+
Sbjct: 86 LMNSKENVPVDRIYKEAKILLKDKFKKNEEKNIDNPLIRMMIVGVPNSGKSTFINKLSKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T+ +W++ G +++ LD+PGI+ + ++ + L+ + I + ++
Sbjct: 146 KGAKVGNRPGITQSKQWIKAGSNIQLLDTPGILWPKF-EEKIGLHLSFTNAIRDEVLNIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF---VQKLALHLFNG--DTHQAAF 235
D+ ++ L + + AL +RY I+++ + + +K + G D + A
Sbjct: 205 DLT---LKFLEEMKEIKPEALVDRYGIELEVPALEIYEAIAKKRGAIIAGGDFDYTRTAN 261
Query: 236 RILTDFRKGKFGWISLERP 254
IL DFR GK G ISLERP
Sbjct: 262 IILNDFRSGKLGKISLERP 280
>gi|319788757|ref|YP_004090072.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
gi|315450624|gb|ADU24186.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
Length = 298
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 24/273 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DARIP S+ +P + + GN+ R+++LN+ D + W Y+ +QG +
Sbjct: 28 VDAVVEITDARIPYSSRNPEIKKICGNKPRMVLLNKADSADADVTSMWIEYYKQQGVPAL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + G K + K L S+ K ++G+ R +R IVG PNVGKSS INRL
Sbjct: 88 ATDCRSGRNVNKFYPMLKELLSEQIEKWDTRGMTGRPIRMMIVGIPNVGKSSFINRLAGA 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+M RPGVTR +WV E LD PG++ + D+ +LA + + D
Sbjct: 148 KMAKVEDRPGVTRGKQWVALEDGFELLDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTE 207
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI----------DMDGTCGKTF-----VQKLALH 224
+A L++ LA P + L +RY I DM G C K + V K
Sbjct: 208 YLACRLLEYLAEDYPDL----LTDRYGISLEDLPEPMDDMQG-CVKGYELLERVGKKRGF 262
Query: 225 LFNG---DTHQAAFRILTDFRKGKFGWISLERP 254
L +G +T +AA +L +FR GK G +SLE+P
Sbjct: 263 LISGGEINTERAANTVLDEFRGGKLGRLSLEKP 295
>gi|450044537|ref|ZP_21837905.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|450086473|ref|ZP_21853668.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|450131251|ref|ZP_21869361.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|450175972|ref|ZP_21885493.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
gi|449153988|gb|EMB57611.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|449201504|gb|EMC02495.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|449219431|gb|EMC19398.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|449245886|gb|EMC44207.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
Length = 283
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +GN+ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGNKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|354584941|ref|ZP_09003832.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
gi|353191058|gb|EHB56567.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
Length = 288
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 16/267 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+PLS+ +P++D+ L + R++++N+ D+ W YF +QG
Sbjct: 24 IDAVIELIDARLPLSSRNPMVDEILQGKPRLMLMNKADLADPEVTRQWIAYFKEQGQPAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ K L + K+ +KG+ PRA+R IVG PNVGKS+LINRL R
Sbjct: 84 PVDASTGTGVKEIPGQIKLLLKEKIDKQIAKGMNPRAMRVLIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAETGDRPGVTKGQQWIKVTGGEMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNV 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI----------DMDGTCGKTFVQKLALHLFNG- 228
D+A ++ ++ A+ R+ + D + + +K + G
Sbjct: 204 EDIAFFAIKYFSK---YYWDAMSERFDLKERPSDFENPDEIVSVMEAIGRKRGCIVSGGR 260
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ L + R GK G S+E P
Sbjct: 261 VDLEKASSIFLRELRAGKLGRYSMESP 287
>gi|304316920|ref|YP_003852065.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778422|gb|ADL68981.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 278
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +PL+D+ + N+KR+++LN+ D+ A W YF K G +
Sbjct: 23 VDIVYELIDARIPKSSRNPLIDELVKNKKRLILLNKADLSDSAVNKMWNEYFKKLGIASL 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N ++ L S++ ++R KG+ + +RA IVG PNVGKS+LIN L K
Sbjct: 83 NINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKAK-LRAMIVGIPNVGKSTLINSLSKT 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W+R + LD+PGI+ + D+ I LA+ I + +
Sbjct: 142 KSAKTGNKPGVTKAKQWIRTPY-FDLLDTPGILWPKFEDEHVGIMLALTAAIKDELLNHE 200
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK---IDMDGTCGKTFVQKLALHLFNG---DTHQA 233
++A L+++L + P + L RYK ID+D + K+ L +G DT +
Sbjct: 201 ELAFSLLKILKQEYPEL----LMQRYKIQNIDIDLYDLLREIGKMRGCLSSGGHIDTERT 256
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ I+ DFR GK G ISLERP
Sbjct: 257 SKIIVEDFRTGKLGKISLERP 277
>gi|319892259|ref|YP_004149134.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
gi|317161955|gb|ADV05498.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
Length = 290
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++ N++DM ++ + W +F ++G +
Sbjct: 24 VDVVFELVDARIPFSSRNPMIDEVIQQKPRVVIFNKKDMTNLKEMEKWYAFFREKGAYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + A + + + KGL PRA+RA IVG PNVGKS+LIN+L R
Sbjct: 84 AVDAKHGKGLKNVEAAAIEATREKFEREKVKGLKPRAIRAMIVGIPNVGKSTLINKLANR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA ++ L AL +KID+
Sbjct: 204 EVAIYGLEFLIE---HDYEALLAHFKIDV 229
>gi|227515158|ref|ZP_03945207.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
gi|227086490|gb|EEI21802.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
Length = 291
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P ST +P +++ G++ R+L++ + D+ W YF + G V+
Sbjct: 26 VDIVFELVDARVPYSTQNPEINRMAGDKPRLLIMTKTDLADPTTTAHWIDYFEQNGQPVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + D R+KG+ RA+RA VG PNVGKS+L+N L+K+
Sbjct: 86 ALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKRAIRAMCVGVPNVGKSTLLNHLVKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R DLE LD+PG++ + + Q A LA+ I + Y
Sbjct: 146 NVAATGNRPGVTTGQQWLRSSADLELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID----MDGTCGKTFVQKLALHL-FNGDTHQAAF 235
DVA + L T L RY++ DG + ++ + D +A+
Sbjct: 206 DVAIFALDYLRAHRT---QELMTRYRLSPASLEDGVTTPDLLLEITKKMGMKDDYDRASE 262
Query: 236 RILTDFRKGKFGWISLERP 254
R++ + R+GK G +LE P
Sbjct: 263 RLIFEMRRGKLGTFTLEDP 281
>gi|304440379|ref|ZP_07400268.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371131|gb|EFM24748.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 281
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 11/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIEV DARIP S+ +PL ++ + + R+++LN+ED+ S ++ AW K + I
Sbjct: 28 VDFVIEVVDARIPRSSRNPLFNEII-KKPRLIILNKEDLASPSENRAWVEAIDKTNDRAI 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + + + +K L D +++ KG+ A+RA IVG PN GKS+ IN + KR
Sbjct: 87 LYNSNSGNPNV-IVKESKILMKDFIERQKEKGISTGALRAMIVGIPNSGKSTFINNVSKR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W+R DL LD+PG++ ++ D+ A + LA I + D+
Sbjct: 146 RATKVGNRPGVTKTNQWIRINDDLHLLDTPGVLWHKL-DKEAQLHLAWTGAIKDEIMDIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG---TCGKTFVQKLALHLFNG--DTHQAAF 235
+A ++ ++ T L+NRYKI+ ++ +K L D ++ +
Sbjct: 205 TLAFEFIKYTLKLDK---TILENRYKIEATDDPLEVMESIARKRGAILRGAEVDYNKVSS 261
Query: 236 RILTDFRKGKFGWISLER 253
IL +FRKG G I+LE+
Sbjct: 262 IILDEFRKGILGRITLEK 279
>gi|184155372|ref|YP_001843712.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|260662115|ref|ZP_05863011.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
fermentum 28-3-CHN]
gi|183226716|dbj|BAG27232.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|260553498|gb|EEX26390.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
fermentum 28-3-CHN]
Length = 290
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P ST +P +++ G++ R+L++ + D+ W YF + G V+
Sbjct: 25 VDIVFELVDARVPYSTQNPEINRMAGDKPRLLIMTKTDLADPTTTAHWIDYFEQNGQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + D R+KG+ RA+RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKRAIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R DLE LD+PG++ + + Q A LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSADLELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID----MDGTCGKTFVQKLALHL-FNGDTHQAAF 235
DVA + L T L RY++ DG + ++ + D +A+
Sbjct: 205 DVAIFALDYLRAHRT---QELMTRYRLSPASLEDGVTTPDLLLEITKKMGMKDDYDRASE 261
Query: 236 RILTDFRKGKFGWISLERP 254
R++ + R+GK G +LE P
Sbjct: 262 RLIFEMRRGKLGTFTLEDP 280
>gi|282916493|ref|ZP_06324255.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
gi|282319933|gb|EFB50281.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
Length = 294
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAVYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|392531088|ref|ZP_10278225.1| ribosomal biogenesis GTPase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083721|ref|YP_006992429.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
gi|412997305|emb|CCO11114.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
Length = 289
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 140/258 (54%), Gaps = 6/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIPLS+ +P++D+ +G + R+++LN+ D+ AW YF +QG +
Sbjct: 24 VDIVFELVDARIPLSSRNPILDELIGEKPRVIILNKSDLADERQTKAWVNYFKEQGISAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G G + AK L + + RSKG+ PRA+RA +G PNVGKS+LINR +KR
Sbjct: 84 PIVAQEGKGMQNVMSEAKLLLKEKFDRMRSKGINPRAIRAMSIGIPNVGKSTLINRFIKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK+LE LD+PGI+ + D KLA+ I + +
Sbjct: 144 NIAKTGNKPGVTKGQQWLKLGKELELLDTPGILWPKFEDPEIGKKLALTGAIKDTLLQMD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D+A + ++ T L RY + + + + + F D +A+ I
Sbjct: 204 DIALFGLDVMR---TYYPNQLAKRYSLTKEELVLELPELLILISEKRGFREDYSRASEMI 260
Query: 238 LTDFRKGKFGWISLERPP 255
+ + R G+ G +L++ P
Sbjct: 261 VFEIRSGRLGRYTLDQAP 278
>gi|241890099|ref|ZP_04777397.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
ATCC 10379]
gi|241863721|gb|EER68105.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
ATCC 10379]
Length = 292
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 151/259 (58%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR PLS+ + +D+ + ++K+I++ N+ D+ A+ W +YF +G V+
Sbjct: 24 VDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKIDLCDRAETAKWKSYFENKGYTVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++ + K+ AK ++ ++ +KG+ PRA+R+ ++G PNVGKS+ IN+L+K+
Sbjct: 84 YTDAKNSNNLNKVIDKAKEELAEKIARQVAKGIKPRAIRSMVIGVPNVGKSTFINKLIKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ +W++ KD+E LD+PGI+ + +Q KL++ I + +
Sbjct: 144 NVANTANKPGVTKKQQWLKLNKDIELLDTPGILMPKFDNQEIGKKLSLIGSIKDDITPLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV-QKLALHLFN---GD-THQAAF 235
DV+ L+++L + L N YKI++ F+ +K+A F GD + +
Sbjct: 204 DVSLYLIELLKY---NYLENLNNLYKINVTSEDENVFIMEKVAEKRFKKIGGDYDYDSTI 260
Query: 236 RIL-TDFRKGKFGWISLER 253
++L DFR KFG I+L+
Sbjct: 261 KLLIQDFRTQKFGLITLDN 279
>gi|229552203|ref|ZP_04440928.1| GTP-binding protein, partial [Lactobacillus rhamnosus LMS2-1]
gi|229314425|gb|EEN80398.1| GTP-binding protein [Lactobacillus rhamnosus LMS2-1]
Length = 270
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ RI++LN++D+ N W Y+ QG I
Sbjct: 9 VDLILEVVDARTPESSRNPMLDELVGDKPRIIILNKQDLADPVLTNEWVRYYQTQGFAAI 68
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 69 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 128
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 129 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 187
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ + V+ F + ++ A
Sbjct: 188 DVVGLYGLTYFMAHYP----EALKKAYHLTDTDLQAAPHEVLVKLTKTQGFGEEFNRMAE 243
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 244 RLIFDARQGKLGRFTLEKP 262
>gi|366165753|ref|ZP_09465508.1| GTP-binding protein YlqF [Acetivibrio cellulolyticus CD2]
Length = 321
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 137/263 (52%), Gaps = 14/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIP+S+ +P D N+ +I+VLN+ D+ N+W+ ++ +G I
Sbjct: 55 VDVVIELLDARIPISSKNPDFDDIFKNKPKIIVLNKSDLADEKVCNSWSKWYNSKGYANI 114
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + G +L + L D + + KG + R ++ IVG PNVGKSSLIN++ +
Sbjct: 115 FIDSIKGKNINQLKGQMQNLMKDKIERDKLKGRISRPIKTMIVGIPNVGKSSLINKIAGK 174
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W+ ++ LD+PGI+ + D + LAI I + D
Sbjct: 175 ASAVTGDRPGVTRGKQWINVNDQIQLLDTPGILWPKFEDIEVGLNLAITGAIKDDILDTV 234
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH------LFNG---DTH 231
++A+ L + L R+ L RYK + GKT ++ L + + +G D
Sbjct: 235 ELASTLFEKLVRLYP---KNLMERYK--LTSIEGKTGLELLEIAGKNRGCIISGGEIDMS 289
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + +L + R GK G I+LE+P
Sbjct: 290 RISAIVLDELRGGKIGKITLEKP 312
>gi|314933424|ref|ZP_07840789.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
gi|313653574|gb|EFS17331.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
Length = 288
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +F +QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDMTNLKELEKWEGFFKEQGFFPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + + KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA + L + I L+ Y ID+D
Sbjct: 204 EVA---IYGLNFMIEHDIDGLKQHYNIDVD 230
>gi|116333442|ref|YP_794969.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098789|gb|ABJ63938.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus brevis ATCC
367]
Length = 286
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 139/259 (53%), Gaps = 6/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP ++ +P + + N+ +++L ++D+ AW Y+ +Q I
Sbjct: 25 VDIVFELVDARIPAASRNPEVTRIAKNKPHLIILTKKDLADPQQTAAWLAYYREQHQPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + +++++A ++ +D ++KGL R +RA VG PNVGKS+L+N L++R
Sbjct: 85 AIDSRANVTPKQITKIAASILADKLAAEKAKGLKERPMRAMTVGVPNVGKSTLLNHLVQR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W+R K LE LD+PGI+ + DQ A KLA+ I E+ Y
Sbjct: 145 KAAQVGDTPGVTKGQQWLRSSKHLELLDTPGILWPKFKDQETAQKLALTGAIKEKLYAKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA + + AL +RY + D++ + ++ D +A+ R+
Sbjct: 205 DVALFALNFFRQ---YHADALIDRYHLVTSDLELSDVDLLLKITEKVGMRDDYERASERL 261
Query: 238 LTDFRKGKFGWISLERPPR 256
+ D R+ K G +L+R PR
Sbjct: 262 ILDARRKKLGGFTLDRAPR 280
>gi|282918942|ref|ZP_06326677.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
gi|282316752|gb|EFB47126.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
Length = 294
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|168188038|ref|ZP_02622673.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
gi|169294120|gb|EDS76253.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
Length = 280
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+RDARI S+ +P +D N+ RI++LN+ D+ W + KV+
Sbjct: 24 VDVVIEIRDARIVKSSANPDIDSICNNKPRIILLNKSDLSEEKITRKWIDKLSNDSVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL+ RA +VG PNVGKSS IN++ K
Sbjct: 84 SVNCVTGKGLNNIKPTINELLKEKHDRLKAKGLVNITTRAMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W++ +E LD+PG++ + D++ + LA I + ++
Sbjct: 144 NTAKVGDRPGVTKNKQWIKTKMGIELLDTPGVLWPKFEDESVGLDLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---------MDGTCGKTFVQKLALHLFNGDTH 231
D+ + +++ ++ L RYK+D MD K + + N D +
Sbjct: 201 DIETLAFKLIGKLQEEYPEKLMERYKLDSLSQDTLENMDNIGRK---RGAVISGGNIDYN 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + IL +FR GK G ISLERP
Sbjct: 258 RVSVMILDEFRGGKLGAISLERP 280
>gi|82750846|ref|YP_416587.1| ribosomal biogenesis GTPase [Staphylococcus aureus RF122]
gi|82656377|emb|CAI80796.1| probable GTP-binding protein [Staphylococcus aureus RF122]
Length = 294
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|182416692|ref|ZP_02948093.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237667586|ref|ZP_04527570.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182379454|gb|EDT76947.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237655934|gb|EEP53490.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 293
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D+ L + RI++LN+ D+ W Y KV+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIDKLLEGKPRIILLNKSDLTDSKVTKEWIDYLTNDNVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KG+ R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGEGLKAIKPALLNLLKEKHDRLKAKGMAKIITRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E LD+PG++ + D A+ LA I + D+
Sbjct: 144 NIAKTGDRPGVTKSKQWIKTAIGIELLDTPGVLWPKFEDDTTALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK-----TFVQKLALHLFNG---DTHQ 232
++A LV+ L + T L+ RYK + C + K L +G D ++
Sbjct: 204 ELALKLVERLQKNYE---TKLKERYK--LSEICENPLDTLDLIGKKRGALISGGQIDYNR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A +L +FR GK G ISLERP
Sbjct: 259 IAVILLDEFRGGKIGNISLERP 280
>gi|337282013|ref|YP_004621484.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
gi|335369606|gb|AEH55556.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
Length = 286
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 28 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQDYFESQGIKTL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 88 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 148 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 207
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L PTV LQ R+K +D++ + ++ F D + +
Sbjct: 208 EVTIFGLNYFKEHYPTV----LQERFKQMDLEQEAPEIIMEMTQKLGFREDYDRFYQLFV 263
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 264 KDVRDGKLGRYTLDR 278
>gi|350270322|ref|YP_004881630.1| putative GTP-binding protein [Oscillibacter valericigenes Sjm18-20]
gi|348595164|dbj|BAK99124.1| putative GTP-binding protein [Oscillibacter valericigenes Sjm18-20]
Length = 293
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 134/262 (51%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V E+ DARIP+S+ +P +D+ + R++VLNR D WA +F ++G V+
Sbjct: 30 VDAVCELLDARIPVSSRNPDVDELTAGKPRLVVLNRADQADPNLTKRWAAFFREKGYAVL 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + L +D KG R +R I+G PNVGKS+ INR+ KR
Sbjct: 90 ECSAKDGSGVDRFPAAVRTLLADKLRAFAEKGQGGRTMRVMILGIPNVGKSTFINRVAKR 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +WV + L+ LD+PGI+ + DQ+ + LA + + D+
Sbjct: 150 KTARTEDRPGVTRAKQWVPVDQGLDLLDTPGILWPKFEDQSVGLNLAFTGAVRDEVIDLE 209
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMD-GTCGKTFV----QKLALHLFNG--DTHQ 232
+A L+ LAR P AL RYK + G G + QK + G DT +
Sbjct: 210 GLACNLMVYLARQYP----AALAERYKFQPEPGDSGYDLLRKAGQKRGFVMRGGEIDTER 265
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A +L +FR GK G +LE P
Sbjct: 266 MAKILLDEFRGGKLGRFTLETP 287
>gi|258539617|ref|YP_003174116.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|385835265|ref|YP_005873039.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
gi|257151293|emb|CAR90265.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|355394756|gb|AER64186.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
Length = 285
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ RI++LN++D+ N W Y+ QG I
Sbjct: 24 VDLILEVVDARTPESSRNPMLDELVGDKPRIIILNKQDLADPVLTNEWVRYYQTQGFAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 84 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 144 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 202
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ + V+ F + ++ A
Sbjct: 203 DVVGLYGLTYFMAHYP----EALKKAYHLTDTDLQAAPHEVLVKLTKTQGFGEEFNRMAE 258
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 259 RLIFDARQGKLGRFTLEKP 277
>gi|49483406|ref|YP_040630.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425297|ref|ZP_05601722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427957|ref|ZP_05604355.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430590|ref|ZP_05606972.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433351|ref|ZP_05609709.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436193|ref|ZP_05612240.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282903798|ref|ZP_06311686.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|282905561|ref|ZP_06313416.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908536|ref|ZP_06316366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910815|ref|ZP_06318618.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914020|ref|ZP_06321807.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282924065|ref|ZP_06331741.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|283770306|ref|ZP_06343198.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283957986|ref|ZP_06375437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501051|ref|ZP_06666902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510013|ref|ZP_06668721.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|293526600|ref|ZP_06671285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|295427730|ref|ZP_06820362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591312|ref|ZP_06949950.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|379020952|ref|YP_005297614.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|384547487|ref|YP_005736740.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|384867874|ref|YP_005748070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830778|ref|YP_006237432.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387780352|ref|YP_005755150.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415683834|ref|ZP_11449036.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|416839290|ref|ZP_11902684.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|416847454|ref|ZP_11907176.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|417653182|ref|ZP_12302916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|417797222|ref|ZP_12444420.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|417797958|ref|ZP_12445144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|417887003|ref|ZP_12531142.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|417903355|ref|ZP_12547202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|418283063|ref|ZP_12895820.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|418312742|ref|ZP_12924251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|418561434|ref|ZP_13125925.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|418566592|ref|ZP_13130965.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|418582077|ref|ZP_13146155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597655|ref|ZP_13161177.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|418603088|ref|ZP_13166479.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|418655687|ref|ZP_13217531.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|418891876|ref|ZP_13445991.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897780|ref|ZP_13451850.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900650|ref|ZP_13454707.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908954|ref|ZP_13462957.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917038|ref|ZP_13470997.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922825|ref|ZP_13476742.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418950552|ref|ZP_13502716.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|418982156|ref|ZP_13529864.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985824|ref|ZP_13533510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241535|emb|CAG40221.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271754|gb|EEV03892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274798|gb|EEV06285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278718|gb|EEV09337.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281444|gb|EEV11581.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284475|gb|EEV14595.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282314037|gb|EFB44429.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|282322088|gb|EFB52412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282325420|gb|EFB55729.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327598|gb|EFB57881.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330853|gb|EFB60367.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595416|gb|EFC00380.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|283460453|gb|EFC07543.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283790135|gb|EFC28952.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920672|gb|EFD97735.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|291096056|gb|EFE26317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466957|gb|EFF09475.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|295128088|gb|EFG57722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576198|gb|EFH94914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|298694536|gb|ADI97758.1| probable GTP-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|312438379|gb|ADQ77450.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194132|gb|EFU24525.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|323441021|gb|EGA98728.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|323442338|gb|EGA99968.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|329733564|gb|EGG69892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|334267270|gb|EGL85734.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|334277080|gb|EGL95319.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|341849976|gb|EGS91109.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|341858425|gb|EGS99215.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|344177454|emb|CCC87922.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830261|gb|AEV78239.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|365168660|gb|EHM59998.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|365238387|gb|EHM79224.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|371969862|gb|EHO87300.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|371977645|gb|EHO94909.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|374393717|gb|EHQ65021.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|374393817|gb|EHQ65120.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|375035925|gb|EHS29019.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|375376724|gb|EHS80243.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|377703118|gb|EHT27434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704437|gb|EHT28746.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705642|gb|EHT29946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710487|gb|EHT34725.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731208|gb|EHT55265.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736148|gb|EHT60178.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750212|gb|EHT74150.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377753992|gb|EHT77902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760815|gb|EHT84691.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|385196170|emb|CCG15791.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 294
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|417896133|ref|ZP_12540100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
gi|341841034|gb|EGS82506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
Length = 294
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|228475017|ref|ZP_04059745.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|418620398|ref|ZP_13183202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
gi|228271002|gb|EEK12390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|374822528|gb|EHR86548.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
Length = 294
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMSNLNEMQKWEHFFTDKGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + K ++KGL PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 AVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 NIAQTGNKPGVTKQQQWIKVGKALQLLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA +Q L + G L+N Y ID++
Sbjct: 204 EVAIYGLQFLIKHDVEG---LKNHYNIDVE 230
>gi|366085997|ref|ZP_09452482.1| GTP-binding protein [Lactobacillus zeae KCTC 3804]
Length = 286
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G + R+++LN++D+ A W Y+ QG I
Sbjct: 25 VDLILEVVDARTPESSRNPMLDEIIGEKPRMMILNKQDLADPALTREWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL+ R
Sbjct: 85 ATDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVHR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ V+ F + ++ A
Sbjct: 204 DVVGLYGLTYFMAHYP----DALKKAYHLTDADLQAAPHDLLVKLTRTQGFGEEFNRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|253731862|ref|ZP_04866027.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724272|gb|EES93001.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 294
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|258423916|ref|ZP_05686801.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|417891835|ref|ZP_12535892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|418308711|ref|ZP_12920317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|418559226|ref|ZP_13123772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|418889035|ref|ZP_13443171.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418993863|ref|ZP_13541499.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|257845945|gb|EEV69974.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|341851121|gb|EGS92050.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|365237737|gb|EHM78580.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|371975517|gb|EHO92811.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|377745913|gb|EHT69888.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754545|gb|EHT78454.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 294
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|314936594|ref|ZP_07843941.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
gi|313655213|gb|EFS18958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
Length = 294
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D + + R+++LN++DM ++ + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMSNLNEMQKWEYFFTDKGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + K ++KGL PRA+RA IVG PNVGKS+LIN+L K+
Sbjct: 84 AVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 NIAQTGNKPGVTKQQQWIKVGKALQLLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA +Q L + G L+N Y ID++
Sbjct: 204 EVAIYGLQFLIKHDVEG---LKNHYNIDVE 230
>gi|387879575|ref|YP_006309878.1| GTP-binding protein [Streptococcus parasanguinis FW213]
gi|386793028|gb|AFJ26063.1| GTP-binding protein [Streptococcus parasanguinis FW213]
Length = 291
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 33 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQDYFESQGIKTL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 93 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 153 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 212
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L PTV LQ R+K +D++ + ++ F D + +
Sbjct: 213 EVTIFGLNYFKEHYPTV----LQERFKQMDLEQEAPEIIMEMTQKLGFREDYDRFYQLFV 268
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 269 KDVRDGKLGRYTLDR 283
>gi|384550000|ref|YP_005739252.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302332849|gb|ADL23042.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 294
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKSTAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L+ YKI++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKAHYKIEV 229
>gi|450164201|ref|ZP_21881202.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
gi|449242281|gb|EMC40879.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
Length = 283
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 138/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ +AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEVAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|418646168|ref|ZP_13208283.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
gi|375021634|gb|EHS15130.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
Length = 294
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNTLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKSHYNIEV 229
>gi|261408013|ref|YP_003244254.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
gi|261284476|gb|ACX66447.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
Length = 288
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 16/267 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+PLS+ +P++D+ L + R++++N+ D+ W YF + G
Sbjct: 24 IDAVIELIDARLPLSSRNPMIDEILQGKPRLVIMNKADLADPEVTRQWQAYFKEAGLTAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G + K L + K+ +KG+ PRA+R IVG PNVGKS+LINRL R
Sbjct: 84 PVDASTGTGVKDIPNQIKLLLKEKIDKQIAKGMNPRAMRVLIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAETGDRPGVTKGQQWIKVAGGEMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNV 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG- 228
D+A ++ A + R+ + D+D + +K + G
Sbjct: 204 EDIAFFAIKYFA---NYYWETMSERFDLKERPTDLDNPDEIVAVMEAIGRKRGCIVSGGR 260
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ L + R GK G S+E P
Sbjct: 261 VDLEKASSLFLRELRAGKLGRYSMESP 287
>gi|336432668|ref|ZP_08612499.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336017950|gb|EGN47703.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 264
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 119/208 (57%), Gaps = 5/208 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+P+S+ +P +D+ N+ R+++LN+ D+ +AWA YF K+G V+
Sbjct: 24 IDLVIELVDARLPVSSRNPDIDELGKNKARLILLNKADLAEEKWNDAWAEYFKKKGYSVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + + R +G+L R VRA +VG PNVGKS+ IN L +
Sbjct: 84 KVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAMVVGIPNVGKSTFINALAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ ++LA I + +
Sbjct: 144 ACAKTGNKPGVTKGKQWIRLNKNVELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKI 207
++ L++ L + P V LQ +Y +
Sbjct: 204 ELGGELIRFLVQSYPGV----LQEKYDV 227
>gi|406669367|ref|ZP_11076644.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
gi|405583402|gb|EKB57343.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
Length = 290
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 136/259 (52%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DARIP S+ +P++D+ +G+++R++ LN+ D+ W F QG I
Sbjct: 24 VDIVVELIDARIPQSSRNPVIDEIIGSKRRVIALNKADLADPVATREWVQTFQSQGHAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G +L L + + V ++ +KG+L + +R I+G PNVGKS+LINR + +
Sbjct: 84 AIDAQHQKGIRQLKELIRKEMAPVFEEQAAKGILSKNIRLMILGIPNVGKSTLINRFVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ +D E LD+PGI+ + DQ +KLAI I + +
Sbjct: 144 NQAITGNKPGVTKAQRWLKIDRDFELLDTPGILWPKFEDQTIGMKLAITGAIKDDLLHMD 203
Query: 181 D-VAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAF 235
D +L +L R P + RY+I T + L L F D +
Sbjct: 204 DLALWLLEYLLERQP----ERIFERYRIKAAEIEQMTHPEVLLLMTERMNFGDDYDAFSE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D+RKG G +L+ P
Sbjct: 260 RMIHDYRKGILGQYTLDEP 278
>gi|359411414|ref|ZP_09203879.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
gi|357170298|gb|EHI98472.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
Length = 287
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P + + L + RI++LN+ D+ W Y ++ KV+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIKKLLEGKPRIILLNKSDLTDNRVTKEWINYLTEEEVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + +L + + + ++KG++ +R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKNIKPMLLSLLKEKHDRLKAKGMVNITMRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G +E LD+PG++ R D A+ LA I + D+
Sbjct: 144 NIAKTGDKPGVTKSKQWIKTGMGIELLDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNG--DT 230
++A LV+ R+ L+ RYK +D GK K + G D
Sbjct: 204 ELALKLVE---RLQGSYEDKLKERYKLAEVFENPLDTLDAIGK----KRGTLISGGQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A +L +FR GK G I+LERP
Sbjct: 257 NRLAVILLDEFRGGKMGAITLERP 280
>gi|116494883|ref|YP_806617.1| GTPase [Lactobacillus casei ATCC 334]
gi|116105033|gb|ABJ70175.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus casei ATCC
334]
Length = 286
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + QA ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQAIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|329924289|ref|ZP_08279444.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
gi|328940771|gb|EGG37086.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
Length = 288
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 16/267 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+PLS+ +P++D+ L + R++++N+ D+ W YF + G
Sbjct: 24 IDAVIELIDARLPLSSRNPMIDEILQGKPRLVIMNKADLADPEVTRQWQAYFKEGGLTAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G + K L + K+ +KG+ PRA+R IVG PNVGKS+LINRL R
Sbjct: 84 PVDASTGTGVKDIPNQIKLLLKEKIDKQIAKGMNPRAMRVLIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAETGDRPGVTKGQQWIKVAGGEMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNV 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG- 228
D+A ++ A + R+ + D+D + +K + G
Sbjct: 204 EDIAFFAIKYFA---NYYWETMSERFDLKERPTDLDNPDEIVAVMEAIGRKRGCIVSGGR 260
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ L + R GK G S+E P
Sbjct: 261 VDLEKASSLFLRELRAGKLGRYSMESP 287
>gi|73662832|ref|YP_301613.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495347|dbj|BAE18668.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 286
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +YF ++G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIQQKPRVVILNKKDMANLKELEKWESYFKEKGFYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ + A + K + KGL PRA+RA IVG PNVGKS+LIN+L +
Sbjct: 84 AIDAKHGKGLKQVEQTAIKATKEKFEKEKQKGLTPRAIRAMIVGIPNVGKSTLINKLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ G+ L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 144 SIAKTGNTPGVTKQQQWIKVGQSLQLLDTPGILWPKFEDQLVGKKLSVTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + L YKID+
Sbjct: 204 EVA---IYALDFMKAHDYDGLIQHYKIDV 229
>gi|118443037|ref|YP_878280.1| ribosomal biogenesis GTPase [Clostridium novyi NT]
gi|118133493|gb|ABK60537.1| GTP-binding protein, putative [Clostridium novyi NT]
Length = 280
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 133/263 (50%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+RDARI S+ +P +D N+ RI++LN+ D+ W + KV+
Sbjct: 24 VDVVIEIRDARIVKSSANPDIDSICNNKSRIILLNKSDLAEEKITRQWIEKLSNDSVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + +SKG++ RA +VG PNVGKSS IN++ K
Sbjct: 84 SVNCVTGKGLNNIKPTINELLKEKHDRLKSKGMVNITTRAMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVT+ +W++ +E LD+PG++ + D++ + LA I + ++
Sbjct: 144 NTAKVGDRPGVTKNKQWIKTKMGIELLDTPGVLWPKFEDESVGLDLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNGDTH 231
D+ + +++ ++ L RYK+ +MD K + + N D +
Sbjct: 201 DIETLAFKLIGKLQEEYPEKLMERYKLNSLSEDTLENMDSIGRK---RGAVISGGNIDYN 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + IL +FR GK G ISLERP
Sbjct: 258 RVSVMILDEFRGGKLGPISLERP 280
>gi|21282855|ref|NP_645943.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486082|ref|YP_043303.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208111|ref|ZP_06924542.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912192|ref|ZP_07129635.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|418317166|ref|ZP_12928590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|418321912|ref|ZP_12933251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875179|ref|ZP_13429439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934145|ref|ZP_13487968.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988064|ref|ZP_13535737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741760|ref|ZP_21723717.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|448743315|ref|ZP_21725224.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
gi|21204294|dbj|BAB94991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244525|emb|CAG42954.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887354|gb|EFH26256.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886438|gb|EFK81640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|365224527|gb|EHM65792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|365239538|gb|EHM80340.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|377719852|gb|EHT44022.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770239|gb|EHT94001.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770888|gb|EHT94647.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547398|gb|ELY15667.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|445563244|gb|ELY19406.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
Length = 294
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 204 EVAIYGLNFLIQ---HDLARLKSHYNIEV 229
>gi|239623746|ref|ZP_04666777.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521777|gb|EEQ61643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 287
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P +D + R+++LN+ D+ WA +F + +
Sbjct: 24 IDLVIELVDARVPLSSRNPDIDDLAKGKARMVLLNKSDLADERVNAQWAAWFEAKNIHAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKR-RSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + GT+K + A ++R R +G++ R +R +VG PNVGKS+ IN
Sbjct: 84 KVDSR-NKGTLKQVQSVVQEACKEKIERDRKRGIMNRPIRTMVVGIPNVGKSTFINSFAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ +PGVT+ +W+R K LE LD+PGI+ R DQ+ +KLA+ I ++ +
Sbjct: 143 KACAKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFEDQSVGLKLALIGSINDQILNK 202
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQ 232
D+A +++L R P + + R+ ++ + ++ +A L G D +
Sbjct: 203 DDLACQCIRILKERYPGM----VSQRFGLETEDKEPAAILEDVARQRSCLMKGGELDIAR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +L DFR GK G ++LERP
Sbjct: 259 AAAMVLDDFRAGKLGRVTLERP 280
>gi|427392628|ref|ZP_18886633.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
gi|425731138|gb|EKU93959.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
Length = 281
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+++P++DQ + ++ R+ +L + D+ N W Y+ QG +
Sbjct: 25 VDIVLELLDARLPESSSNPMLDQIIQDKPRLKILMKADLADQKRTNQWLNYYQDQGKPAM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ K + SD +R++KGL RAV+A VG PNVGKS+LINR +
Sbjct: 85 ALNVKHKQDMKDVTDQIKVVLSDWQKQRQAKGLNQRAVKAVSVGIPNVGKSTLINRFAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+++ LE LD+PGI+ + DQ KLA+ I ++ +
Sbjct: 145 NIAQTGNRPGVTQAQQWIKYKGVLELLDTPGILWPKFEDQEVGKKLALTGAIKDKLLYMD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI----DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+A + A P ++RY++ + D + + F D +AA
Sbjct: 205 DIALYAIDFFKAHYP----GRFEDRYQLAQGAEKDLSSVDLLLAITGKRGFGDDYDRAAT 260
Query: 236 RILTDFRKGKFGWISLER 253
I+ + RKG G SL++
Sbjct: 261 MIVNEIRKGLLGPFSLDQ 278
>gi|417907113|ref|ZP_12550889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
gi|341596744|gb|EGS39335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
Length = 288
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +F +QG +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDMTNLKELEKWEGFFKEQGFFPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + A + + + KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 AVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+VA + + G L+ Y ID+D
Sbjct: 204 EVAIYGLNFMIEHDLEG---LRQHYNIDVD 230
>gi|330719082|ref|ZP_08313682.1| GTP-binding protein YlqF [Leuconostoc fallax KCTC 3537]
Length = 283
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 8/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P +D+ +G + R+L++ + D+ W +F QG V+
Sbjct: 26 VDIVFELVDARIPESSRNPEVDKLIGKKPRLLIMTKADLADPEQTRLWKKHFEMQGYTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + KG++ + +RA I G PNVGKS+L+N L+K+
Sbjct: 86 VLDTRDPKTPQLVTKAAREALKAKKTAQLEKGIVDQPIRALIAGIPNVGKSTLLNHLIKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQA ++L++ + +
Sbjct: 146 NVAPTADRPGVTKKIAWLKTSTKLELLDSPGVLWPKFEDQAIGLRLSLTGAVKSTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D A L++ I A RY + D ++ V L L F D +A+ R
Sbjct: 206 DAALFLLKFYRDYYPERIIA---RYHLP-DNAFDQSDVDVLLLITQKLGFKDDYDRASER 261
Query: 237 ILTDFRKGKFGWISLE 252
IL D RKGK G +L+
Sbjct: 262 ILNDLRKGKLGTFTLD 277
>gi|57651812|ref|YP_186118.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
COL]
gi|87162211|ref|YP_493833.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194951|ref|YP_499751.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151221365|ref|YP_001332187.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509409|ref|YP_001575068.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142033|ref|ZP_03566526.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452542|ref|ZP_05700548.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|262048141|ref|ZP_06021028.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262051870|ref|ZP_06024086.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|269202859|ref|YP_003282128.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|282920027|ref|ZP_06327756.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|284024236|ref|ZP_06378634.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
132]
gi|294848238|ref|ZP_06788985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|296274800|ref|ZP_06857307.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MR1]
gi|304381193|ref|ZP_07363846.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014434|ref|YP_005290670.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|384869777|ref|YP_005752491.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131]
gi|386728926|ref|YP_006195309.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387142852|ref|YP_005731245.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|387602518|ref|YP_005734039.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|404478583|ref|YP_006710013.1| GTPase protein [Staphylococcus aureus 08BA02176]
gi|415686433|ref|ZP_11450522.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417648959|ref|ZP_12298771.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|418281427|ref|ZP_12894238.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|418286379|ref|ZP_12899025.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|418309862|ref|ZP_12921413.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|418317684|ref|ZP_12929100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|418570773|ref|ZP_13135034.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|418579074|ref|ZP_13143169.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418649313|ref|ZP_13211341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|418658317|ref|ZP_13220049.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873497|ref|ZP_13427792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|418886504|ref|ZP_13440652.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418903452|ref|ZP_13457493.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906178|ref|ZP_13460205.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911850|ref|ZP_13465833.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925476|ref|ZP_13479378.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928500|ref|ZP_13482386.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418948218|ref|ZP_13500538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955486|ref|ZP_13507426.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|418980052|ref|ZP_13527840.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|419774366|ref|ZP_14300336.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|421150193|ref|ZP_15609849.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742360|ref|ZP_16796366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745526|ref|ZP_16799465.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785073|ref|ZP_18211876.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|440706067|ref|ZP_20886816.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|440734689|ref|ZP_20914301.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443639731|ref|ZP_21123732.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
gi|57285998|gb|AAW38092.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
COL]
gi|87128185|gb|ABD22699.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202509|gb|ABD30319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374165|dbj|BAF67425.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368218|gb|ABX29189.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859760|gb|EEV82602.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|259160271|gb|EEW45299.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|259163707|gb|EEW48262.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262075149|gb|ACY11122.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|269940735|emb|CBI49116.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|282594743|gb|EFB99727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|283470456|emb|CAQ49667.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|294825038|gb|EFG41460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|304340176|gb|EFM06117.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198483|gb|EFU28812.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140941|gb|EFW32788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144344|gb|EFW36110.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313912|gb|AEB88325.1| Possible GTP-binding protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329728952|gb|EGG65366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|365165249|gb|EHM57077.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|365167087|gb|EHM58563.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|365237985|gb|EHM78824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|365244952|gb|EHM85604.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|371982953|gb|EHP00101.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|374363131|gb|AEZ37236.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|375029686|gb|EHS23011.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|375038869|gb|EHS31824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366034|gb|EHS70046.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370969|gb|EHS74761.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|375373165|gb|EHS76862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697101|gb|EHT21456.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725228|gb|EHT49343.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725457|gb|EHT49570.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377738412|gb|EHT62421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742467|gb|EHT66452.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744545|gb|EHT68522.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765478|gb|EHT89328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|379992215|gb|EIA13672.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|383971892|gb|EID87954.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230219|gb|AFH69466.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|394329583|gb|EJE55685.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|404440072|gb|AFR73265.1| putative GTPase protein [Staphylococcus aureus 08BA02176]
gi|421956483|gb|EKU08812.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|436431717|gb|ELP29070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507598|gb|ELP43278.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|443406382|gb|ELS64962.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
Length = 294
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKSHYNIEV 229
>gi|374603429|ref|ZP_09676409.1| GTPase [Paenibacillus dendritiformis C454]
gi|374391025|gb|EHQ62367.1| GTPase [Paenibacillus dendritiformis C454]
Length = 296
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 136/266 (51%), Gaps = 15/266 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV IE+ DAR+P+S+ +P++ L ++ R+++LN+ D+ W F +G +
Sbjct: 24 IDVAIELLDARLPMSSRNPMIGDILQHKPRLILLNKSDLADPEMNARWLQAFRGEGHAAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G ++ A+ L + ++ +KG+ PR VRA IVG PNVGKS+LIN+L R
Sbjct: 84 AIDASTGTNVAQIPGEARKLLEEKIQRQLAKGMKPRPVRALIVGIPNVGKSTLINKLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA I + +V
Sbjct: 144 SVAATGDRPGVTKGQQWIKVGSEMELLDTPGILWPKFEDQEVGYRLAATGAIKDEILNVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG------------ 228
D+A ++ LA L RY + + G+ + + + G
Sbjct: 204 DIAFYTIKQLADQYR---ERLNERYGLAIPPEGGQEQDEIVEIMEAIGRKRGCLMAGGRV 260
Query: 229 DTHQAAFRILTDFRKGKFGWISLERP 254
+ +A+ IL D R GK G I+LE P
Sbjct: 261 NLEKASSVILRDLRGGKLGRITLEEP 286
>gi|418568992|ref|ZP_13133332.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
gi|371978177|gb|EHO95427.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
Length = 294
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGENLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKSHYNIEV 229
>gi|328957388|ref|YP_004374774.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
gi|328673712|gb|AEB29758.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
Length = 287
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 142/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++D+ +G + RI++LN+ D+ + W YF QG +
Sbjct: 24 VDIVFELVDARLPLSSRNPILDEIIGEKPRIIILNKSDLADPLETKKWVAYFNDQGIAAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G G +L AK L +R +KG+ PRA+RA +G PNVGKS+LINR +K+
Sbjct: 84 PIVAQEGHGMKQLMAKAKELLQPKFDRRAAKGIKPRAIRAMSIGIPNVGKSTLINRFVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK+LE LD+PGI+ + D KLA+ I + +
Sbjct: 144 NIAQTGNKPGVTKAQQWLKLGKELELLDTPGILWPKFEDPEIGKKLALTGAIKDTILQLD 203
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
++A L +M R P + L RY++ ++D + + + D +AA
Sbjct: 204 EIAMYGLEEMKIRNPEM----LAKRYRLTEEELDLESPELLMLISERKGYKEDYTRAAEL 259
Query: 237 ILTDFRKGKFGWISLERPP 255
I+ + R GK G +L+ P
Sbjct: 260 IVFEIRSGKIGKYTLDIAP 278
>gi|421860563|ref|ZP_16292669.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410829749|dbj|GAC43106.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 296
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 143/267 (53%), Gaps = 17/267 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA-WATYFAKQGTKV 59
+DV IE+ DAR+P+S+ +P++ L N+ R+++LN+ D+ D NA W F +G
Sbjct: 24 IDVAIELLDARLPMSSRNPMIGDILQNKPRLILLNKADLAD-PDMNAQWLQAFRGEGHAA 82
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + G ++ A+ L + ++ +KG+ PR VRA IVG PNVGKS+LIN+L
Sbjct: 83 LAIDASTGTNVAQIPGEARKLLEEKIQRQLAKGMKPRPVRALIVGIPNVGKSTLINKLAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + RPG+T+ +W++ G ++E LD+PGI+ + DQ +LA I + +V
Sbjct: 143 RSVAATGDRPGITKGQQWIKVGFEMELLDTPGILWPKFEDQEVGYRLAATGAIKDEILNV 202
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFV--------QKLALHLFNG- 228
++A +++ LA L RY +++ + G+ + +K + G
Sbjct: 203 EEIAFYVIKQLADPYR---DRLNERYGLEIPPQSSLGQDDIVEIMEAIGRKRGCLMAGGC 259
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
+ +A+ IL D R GK G ISLE P
Sbjct: 260 VNLEKASSLILRDLRGGKLGRISLEEP 286
>gi|384861837|ref|YP_005744557.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|302751066|gb|ADL65243.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
Length = 285
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 15 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 75 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 135 SIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 195 EVAIYGLNFLIQ---NDLARLKSHYNIEV 220
>gi|410727082|ref|ZP_11365305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
gi|410599417|gb|EKQ53970.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
Length = 287
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +++ L + RI++LN+ D+ W Y + KV+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDLTDSKVTKEWINYLTEDDVKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KG++ +R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKNIKPTLLTLLKEKHDRLKAKGMVNITMRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G +E LD+PG++ + D A+ LA I + D+
Sbjct: 144 NIAKTGDRPGVTKSKQWIKTGIGIEMLDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNG--DT 230
++A LV+ R+ L+ RYK +D GK K + G D
Sbjct: 204 ELALKLVE---RLQNSYEEKLKERYKLTEVFENPLDTLDAIGK----KRGTLISGGQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A +L +FR GK G I+LERP
Sbjct: 257 NRIAVILLDEFRGGKMGNITLERP 280
>gi|339450881|ref|ZP_08654251.1| GTP-binding protein YlqF [Leuconostoc lactis KCTC 3528]
Length = 281
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 12/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D+ +G++ R+L++ + D+ AW +F QG V+
Sbjct: 26 VDVVFELVDARIPESSRNPEVDKLIGSKPRLLIMTKADLADPEQTRAWKQHFEAQGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKKAAQLARGIQDQPIRALIAGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQTVGLKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFV---QKLALHLFNGDTHQAA 234
D L+ I + RY +D D + + QKL F D +A+
Sbjct: 206 DAVLFLLDFFRNYRPEAIIS---RYHLDANVFDEASVQILLDITQKLG---FKDDYEKAS 259
Query: 235 FRILTDFRKGKFGWISLE 252
R+L D RKGK G +L+
Sbjct: 260 ERVLNDLRKGKLGPFTLD 277
>gi|334340375|ref|YP_004545355.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
gi|334091729|gb|AEG60069.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
Length = 283
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV +E+ DARIPLS+ +P++ Q LGN+ R+++LN+ D+ AW + KVI
Sbjct: 26 VDVAVELLDARIPLSSENPMIGQILGNKPRVIILNKSDLADPGLTKAWQKKLERDQVKVI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ + A L ++ K +KG RA R ++G PNVGKSS INRL+ R
Sbjct: 86 AVDTLKGEGLKEVPKAANLLVAEQMAKLAAKGRRARAARCMVLGIPNVGKSSFINRLVGR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R PGVT+ +W+R LE LD+PGI+ + D KLA+ + E+ +DV
Sbjct: 146 RATKTGDLPGVTKGQQWIRLEGSLELLDTPGILWPKFEDPQVGFKLAVTGAVKEQVFDVY 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDGTCGKTFVQKLALHLFNG--DTHQA 233
+VA L+Q L ++ RY++ D G ++ + + G D +A
Sbjct: 206 EVALKLLQWLVE---TNPEKIKERYRLTDLNPDRVGLLSDIGARR-GMLVSGGAVDELKA 261
Query: 234 AFRILTDFRKGKFGWISLERP 254
A IL +FR+G G +L+ P
Sbjct: 262 AHLILKEFREGTLGRYTLDLP 282
>gi|333897176|ref|YP_004471050.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112441|gb|AEF17378.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 278
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +PL+D + N+KRI++LN+ D+ + W YF +G I
Sbjct: 23 VDIVYELLDARIPRSSRNPLIDDLVKNKKRIILLNKSDLADLEVNKMWNDYFNLKGHVSI 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + L SD+ K+R KG+ + +RA IVG PNVGKS+LIN L K
Sbjct: 83 NINSLDSKCIQSIYELTLKECSDIIDKKRQKGIKAK-LRAMIVGIPNVGKSTLINSLTKT 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + LD+PGI+ + D+ + LA+ I + +
Sbjct: 142 KNAKTGNKPGVTKSKQWIKTPY-FDLLDTPGILWPKFEDEHVGMMLALTSAIKDELLNHE 200
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKI-DMDGTCGKTFV---QKLALHLFNG--DTHQA 233
++A +L+ +L P + L RYK+ D+ K + F G DT +A
Sbjct: 201 ELAYLLLDILKINYPEL----LIKRYKLEDISKDVYKLLTDIGKARGCLSFGGIVDTERA 256
Query: 234 AFRILTDFRKGKFGWISLERP 254
A I+ DFR GK G ISLERP
Sbjct: 257 AKIIIDDFRTGKIGKISLERP 277
>gi|315640708|ref|ZP_07895810.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
gi|315483463|gb|EFU73957.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
Length = 298
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 139/259 (53%), Gaps = 12/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+PLS+ +P++DQ + ++ R+++LN+ D+ + W YF G + +
Sbjct: 32 VDLVFELVDARLPLSSRNPMLDQIVQHKPRVVLLNKADLADESQTRKWQAYFESLGYETL 91
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + T + AK + + +G+ RA+RA ++G PNVGKS+++NRL+ +
Sbjct: 92 ACNAKETNTTKAVLAKAKRTLKEKRARDLERGIQARAIRAMVLGIPNVGKSTIMNRLVGK 151
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W+R G +LE LD+PGI+ + DQ KLA+ I ++ +
Sbjct: 152 KIAQTGNKPGVTKGQQWLRVGNELELLDTPGILWPKFEDQEIGKKLALTGAIKDQLLHLD 211
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGT------CGKTFVQKLALHLFNGDTHQAA 234
D+A ++ T + RY + ++ + +K+ L D +A+
Sbjct: 212 DIALYGLEFFT---TYYPGRISQRYGLKIEDEQLPVPDLLMSVTKKMGLR---EDYERAS 265
Query: 235 FRILTDFRKGKFGWISLER 253
R L + R+GK G +L+R
Sbjct: 266 ERFLLEVRQGKLGRFTLDR 284
>gi|390934868|ref|YP_006392373.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570369|gb|AFK86774.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 278
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 19/264 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +PL+D + N+KRI++LN+ D+ + W YF +G +
Sbjct: 23 VDVVYELLDARIPKSSRNPLIDDLVKNKKRIILLNKSDLADLEVNKMWNDYFNLKGHVSL 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + L SD+ K+R KG+ + +RA IVG PNVGKS+LIN L K
Sbjct: 83 NINSLDSRCIQSIYELTLKECSDIIDKKRQKGIKAK-LRAMIVGIPNVGKSTLINSLTKT 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + LD+PGI+ + D+ I LA+ I + +
Sbjct: 142 KNAKTGNKPGVTKSKQWIKTPY-FDLLDTPGILWPKFEDEHVGIMLALTSAIKDELLNHE 200
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGK------TFVQKLALHLFNG---DT 230
++A L+ +L P + L RYK++ GK T + K L +G DT
Sbjct: 201 ELAYSLLDILKINYPEL----LMKRYKLE---DIGKDVFKLLTDIGKSRGCLSSGGIVDT 253
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA I+ DFR GK G ISLERP
Sbjct: 254 ERAAKIIIDDFRAGKIGKISLERP 277
>gi|302389635|ref|YP_003825456.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
gi|302200263|gb|ADL07833.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
Length = 279
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 20/260 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR P ST P + +G++K ++++N+ D+ W ++FA G +
Sbjct: 24 VDVVLEIVDARAPKSTHIPDIHDLIGSKKLLIIMNKADLADEKTTERWVSFFADNGMDSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +G KL+ AK L+ G + R +R +VG PNVGKSS IN++ R
Sbjct: 84 SVDSRRRVGFKKLNEFAKELS----------GKIKRPLRGIVVGVPNVGKSSFINQIAGR 133
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PG+TR W++ G E LD+PGI+ +I ++A +KLA I E +V
Sbjct: 134 KGAKTGNKPGITRGKMWLKAGDKFELLDTPGILWPKIEEEAVGLKLAFLGCIKEELLNVE 193
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLF-----NGDTHQAA 234
+++ L+ L R P L NRY ++ Q F DT +AA
Sbjct: 194 EISLKLIGFLMRRFPET----LVNRYGVNSSENPPVILEQIAKNRGFMAAGGKADTFRAA 249
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +F++GK G ISLE P
Sbjct: 250 KTLLKEFQEGKLGRISLEEP 269
>gi|421768951|ref|ZP_16205660.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|421771214|ref|ZP_16207874.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
gi|411185347|gb|EKS52475.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|411185800|gb|EKS52926.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
Length = 285
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ RI++LN++D+ N W Y+ QG I
Sbjct: 24 VDLILEVVDARTPESSRNPMLDELVGDKPRIIILNKQDLADPVLTNEWVRYYQTQGFAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 84 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 144 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 202
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ V+ F + ++ A
Sbjct: 203 DVVGLYGLTYFMAHYP----EALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAE 258
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 259 RLIFDARQGKLGRFTLEKP 277
>gi|291522200|emb|CBK80493.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus catus
GD/7]
Length = 285
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 10/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL++ +P +D + R+++LN+ DM W +YF +G V+
Sbjct: 24 IDIVIELVDARLPLASKNPDIDDLAKGKARLILLNKSDMADPKYTKLWESYFKAKGFFVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G ++ + + + R +G+ R +RA IVG PNVGKS+ IN +
Sbjct: 84 QINARTGAGMKAVTGVVNEACKEKIERDRRRGIKNRPIRAMIVGIPNVGKSTFINSYAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ K++E LD+PGI+ + DQA KLAI I + ++
Sbjct: 144 ACTKTGNKPGVTKGKQWIKLNKNVELLDTPGILWPKFEDQAVGQKLAISGSIKDDILNIT 203
Query: 181 DVAAILVQMLAR------IPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAA 234
++A L +++ GI + K+ D K + K + +AA
Sbjct: 204 ELAMKLADYMSKNYPGTMASRYGIEESDDSVKVLADIAIAKCCLMKGG----EPNIDKAA 259
Query: 235 FRILTDFRKGKFGWISLERPPR 256
++ DFR + G ++LE+PP+
Sbjct: 260 SMLIDDFRSLRLGKVTLEQPPQ 281
>gi|449958420|ref|ZP_21809743.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|450140205|ref|ZP_21872835.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
gi|449170022|gb|EMB72763.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|449232095|gb|EMC31231.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
Length = 283
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|449875654|ref|ZP_21782326.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
gi|449930305|ref|ZP_21802010.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449980074|ref|ZP_21816995.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449999609|ref|ZP_21824578.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|450005823|ref|ZP_21826894.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|450063408|ref|ZP_21844874.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|450127425|ref|ZP_21868583.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|450158654|ref|ZP_21878970.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449163670|gb|EMB66766.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449177481|gb|EMB79782.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449186740|gb|EMB88556.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|449188279|gb|EMB90002.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|449204705|gb|EMC05491.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|449230813|gb|EMC30059.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|449242152|gb|EMC40755.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449253617|gb|EMC51563.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
Length = 283
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|262039470|ref|ZP_06012774.1| ribosome biogenesis GTP-binding protein YlqF [Leptotrichia
goodfellowii F0264]
gi|261746537|gb|EEY34072.1| ribosome biogenesis GTP-binding protein YlqF [Leptotrichia
goodfellowii F0264]
Length = 292
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 16/270 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DARIPLS+ +P + + ++++I+VLN+ D++ D W YF K
Sbjct: 24 IDVVIEILDARIPLSSKNPDISKLAKSKQKIVVLNKVDLVDTKDLKKWEEYFLKNEISDY 83
Query: 61 FSNGQLGMGTM--KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
F + GT +L ++ + SD K + KGL VRA IVG PNVGKS IN+ +
Sbjct: 84 FVALSVEKGTNFNELRKITDKIYSDKLEKMKKKGLRKTEVRAMIVGIPNVGKSKFINKFV 143
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ PG TR +W++ +E LD+PG++ + D+ A LAI I +
Sbjct: 144 NKNKAKVGNTPGFTRGKQWIKINDKIELLDTPGVLWPKFEDENIAYNLAITGSIKDNVLP 203
Query: 179 VADVA-------AILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA--LHLFNGD 229
+ +V IL ++ + + N+ +I T ++ L L +F +
Sbjct: 204 IEEVVMKFFDKLKILNKIENLVEVYNLEEYTNKEEI--KDTENHKILEMLEKRLGIFKNE 261
Query: 230 THQ---AAFRILTDFRKGKFGWISLERPPR 256
H A R+L D+R GK G LE P
Sbjct: 262 EHNYETVARRVLKDYRNGKTGKFFLELPEE 291
>gi|449927031|ref|ZP_21801063.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|450050424|ref|ZP_21840267.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
gi|449160029|gb|EMB63317.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|449202643|gb|EMC03545.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
Length = 283
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|355677530|ref|ZP_09060433.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
gi|354813095|gb|EHE97708.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
Length = 282
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 142/262 (54%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PLS+ +P +D + R+++LN+ D+ WA +F +G V+
Sbjct: 24 IDLVIELVDARVPLSSRNPDIDSLAAGKARMVLLNKSDLADERLNAQWAAWFEAKGIHVV 83
Query: 61 FSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + GT+K + + + D + R +G+L R +R +VG PNVGKS+ IN
Sbjct: 84 KIDAR-NKGTLKQVQGVVQQACRDKIERDRKRGILNRPIRTMVVGIPNVGKSTFINSFAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ +PGVT+ +W+R K LE LD+PGI+ R DQ+ +KLA+ I ++ +
Sbjct: 143 KACAKTGNKPGVTKGNQWIRLNKTLELLDTPGILWPRFDDQSVGLKLALIGSINDQILNK 202
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQ 232
++A +++L + P L NR+ ++ + ++ +A L G D +
Sbjct: 203 DELAGQCIRILKEQYPGT----LLNRFDLETEDKEPAAILEDIARARSCLMKGGELDVAR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A+ +L DFR GK G ++LE+P
Sbjct: 259 ASALLLDDFRAGKLGRVTLEQP 280
>gi|433462620|ref|ZP_20420197.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
gi|432188568|gb|ELK45749.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
Length = 280
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR P S+ +P++ + L + +++VL ++D+ W YF +
Sbjct: 24 VDFVIELVDARAPFSSQNPMLHEILQEKPKMIVLMKKDLADPQKTAEWIEYFEASSIPAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + AK L + K ++KG+ PRA RA I+G PNVGKS+LINRL +
Sbjct: 84 AIEANKKQDVQRVVQKAKELGREKLEKLKAKGVRPRASRAMILGIPNVGKSTLINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+M +PGVT +W++ K+ E LD+PGI+ + ++ +LA I ++
Sbjct: 144 KMAKTGDKPGVTTKQQWIKVKKEFELLDTPGILWPKFEEEEVGYRLAAIGTIKDQILPKE 203
Query: 181 DVAA-ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ---KLALHLFNG--DTHQAA 234
DVAA +L M P + L+ R+ D + F Q K G + + +
Sbjct: 204 DVAAYVLDYMRDHYPAL----LEERFGFDRYDDIMEAFEQIGRKRGCLESGGVVNFEKVS 259
Query: 235 FRILTDFRKGKFGWISLERP 254
IL D R GKFG ISLE P
Sbjct: 260 DVILQDLRSGKFGLISLESP 279
>gi|163791098|ref|ZP_02185518.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
gi|159873654|gb|EDP67738.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
Length = 284
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 141/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DAR+PLS+ +P++D+ +G + RI++LN+ D+ W YF +QG +
Sbjct: 24 VDVIFELVDARLPLSSRNPILDEIIGEKPRIIILNKSDLADPVQTKKWVEYFNEQGIAAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
Q G G ++ AK + +R +KG+ PRA+RA +G PNVGKS+LINR +K+
Sbjct: 84 PIVAQEGKGMKQVMEKAKEILKPKFDRRAAKGIKPRAIRAMSIGIPNVGKSTLINRFIKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ GK+LE LD+PGI+ + D A KLA+ I + +
Sbjct: 144 NVAKTGNKPGVTKAQQWLKLGKELELLDTPGILWPKFEDPAIGQKLALTGAIKDTILQLD 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
D+A ++ M P ++ RY++ +M + + F D +AA
Sbjct: 204 DIAMYGIEFMRENYP----ESISKRYRLSEEEMTLAIPEMLMLISERRGFRDDYSRAAEM 259
Query: 237 ILTDFRKGKFGWISLERPP 255
++ + R GK G +L+ P
Sbjct: 260 VIFEIRSGKVGRFTLDIAP 278
>gi|295091814|emb|CBK77921.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium cf.
saccharolyticum K10]
Length = 292
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL + +P +D+ + R+++LN+ D+ W ++F ++G VI
Sbjct: 24 IDLVIELVDARMPLGSRNPDIDELAKGKGRMVLLNKADLADERMNEQWTSWFKERGFHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ + + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 KINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R + LE LD+PGI+ + DQ + LA I + D
Sbjct: 144 ACAKTGNKPGVTKGNQWIRLNRTLELLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF-----VQKLALHLFNG---DTHQ 232
++AA L L L+ RY++ + G + + + ++ L G D +
Sbjct: 204 ELAAELADFLM---IHYREMLEARYQL-VPGEKYEPYQVLEQIARVRSCLLKGNELDLKK 259
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA L DFR GK G I+LE P
Sbjct: 260 AANLFLDDFRSGKLGRITLEFP 281
>gi|449881531|ref|ZP_21784505.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
gi|449251169|gb|EMC49193.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
Length = 283
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFKKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|239631518|ref|ZP_04674549.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980689|ref|ZP_12621369.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
gi|239525983|gb|EEQ64984.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525012|gb|EKP99919.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
Length = 286
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDIVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|302874783|ref|YP_003843416.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
gi|307690601|ref|ZP_07633047.1| ribosomal biogenesis GTPase [Clostridium cellulovorans 743B]
gi|302577640|gb|ADL51652.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
Length = 285
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 15/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+RDARI S+ +P +D+ + RI++LN+ D+ W + + TK++
Sbjct: 26 VDVVIEIRDARIIKSSANPDIDEITKGKPRIILLNKSDLSDERCTKEWIDNLSNEETKIL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL+ +A +VG PNVGKS+ INR+
Sbjct: 86 TVNCLNGQGIRNIKPAIDQLLKEKHDRMKAKGLINIKTKAMVVGIPNVGKSTFINRMAGS 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W+R +E LD+PG++ + D + LA I + DV
Sbjct: 146 SIAKTGDRPGVTKSKQWIRTKIGIELLDTPGVLWPKFEDNRVGLNLAFTGAIKDEIMDVE 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---------MDGTCGKTFVQKLALHLFNGDTH 231
++A L++ L + +L RYK+D MD K + + L N D +
Sbjct: 206 ELALKLIEDLM---VIAPKSLMERYKLDSIAETAIDNMDNIARK---RGMILSGNNIDYN 259
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ A +L +FR GK G ISLER
Sbjct: 260 RVAIMLLDEFRGGKLGKISLER 281
>gi|449909707|ref|ZP_21794330.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
gi|449971257|ref|ZP_21814298.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|450029521|ref|ZP_21832725.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|450035162|ref|ZP_21834851.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|450056943|ref|ZP_21842300.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|450067235|ref|ZP_21846489.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|450070397|ref|ZP_21847531.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|450093717|ref|ZP_21856703.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|450110770|ref|ZP_21862320.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|450148705|ref|ZP_21875763.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|450182873|ref|ZP_21888494.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449172252|gb|EMB74883.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|449194447|gb|EMB95803.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|449195801|gb|EMB97109.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|449206006|gb|EMC06727.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|449208171|gb|EMC08788.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|449213883|gb|EMC14206.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|449216983|gb|EMC17061.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|449224544|gb|EMC24176.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|449235498|gb|EMC34455.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|449244107|gb|EMC42495.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449261123|gb|EMC58608.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
Length = 283
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 4/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
++ + R L RYK ID++ + + F D + +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQRLGFRDDYDRFYQVFIK 261
Query: 240 DFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 262 DVRDGRLGCYTLDR 275
>gi|322389595|ref|ZP_08063144.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
gi|321143721|gb|EFX39150.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
Length = 286
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 28 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQDYFESQGIKTL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 88 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 148 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 207
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V + + P V LQ R+K +D++ + ++ F D + +
Sbjct: 208 EVTIFGLNYFKKHYPAV----LQERFKQMDLEQEAPEIIMEMTQKLGFREDYDRFYSLFV 263
Query: 239 TDFRKGKFGWISLER 253
D R G+ G SL+R
Sbjct: 264 KDVRDGRLGRYSLDR 278
>gi|283798047|ref|ZP_06347200.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
M62/1]
gi|291074351|gb|EFE11715.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
M62/1]
Length = 292
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR+PL + +P +D+ + R+++LN+ D+ W ++F ++G VI
Sbjct: 24 IDLVIELVDARMPLGSRNPDIDELARGKGRMVLLNKADLADERMNEQWTSWFKERGFHVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + GMG ++ + + + + R +G+ R VRA +VG PNVGKS+ IN +
Sbjct: 84 KINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPVRAMVVGIPNVGKSTFINSFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R + LE LD+PGI+ + DQ + LA I + D
Sbjct: 144 ACAKTGNKPGVTKGNQWIRLNRTLELLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKT 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF-----VQKLALHLFNG---DTHQ 232
++AA L L L+ RY++ + G + + + ++ L G D +
Sbjct: 204 ELAAELADFLM---IHYREMLEARYQL-VPGEKYEPYQVLEQIARVRSCLLKGNELDLKK 259
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA L DFR GK G I+LE P
Sbjct: 260 AANLFLDDFRSGKLGRITLEFP 281
>gi|420156939|ref|ZP_14663779.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
gi|394756949|gb|EJF40008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
Length = 289
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 135/263 (51%), Gaps = 14/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ E+ DAR+P+S+ +P++D + N+ R++++N+ D+ A W ++ QG +
Sbjct: 28 VDIAAEMIDARVPVSSRNPVLDSLIQNKPRVILMNKSDLADSAQTERWIRFYQSQGISAV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G L + + SD R+KG++ R VR +VG PNVGKSS IN+L
Sbjct: 88 ALDSRSGKNLKAFFPLVRDVLSDRIAAWRAKGMVGRPVRVMVVGVPNVGKSSFINKLSHG 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W G E LD+PG++ + D +LA + + D
Sbjct: 148 GKANVEDRPGVTRNNQWFTLGGGFELLDTPGVLWPKFEDPLVGERLAFTGAVKDDVVDTE 207
Query: 181 DVAAILVQMLARIPTVGITA-LQNRYK---IDMDGTCGKTFVQKLALH---LFNG---DT 230
+AA L+++L V A L+ RYK +D G G + +A L +G DT
Sbjct: 208 HLAARLLEVLC----VSYPAPLKERYKLQDVDFTGMKGHEVLALIAKKRGMLISGGEVDT 263
Query: 231 HQAAFRILTDFRKGKFGWISLER 253
+AA +L +FR K G ++LE+
Sbjct: 264 ERAAITVLDEFRGAKLGRVTLEQ 286
>gi|449964553|ref|ZP_21811368.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
gi|449172398|gb|EMB75026.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
Length = 283
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAIGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|24379433|ref|NP_721388.1| GTPase YlqF [Streptococcus mutans UA159]
gi|397649667|ref|YP_006490194.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449865443|ref|ZP_21779001.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
gi|449869774|ref|ZP_21780268.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449889171|ref|ZP_21787514.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449892459|ref|ZP_21788463.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449914950|ref|ZP_21795950.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449936859|ref|ZP_21804235.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449941225|ref|ZP_21805455.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449985491|ref|ZP_21819700.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449989503|ref|ZP_21821083.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|450041972|ref|ZP_21837577.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|450077403|ref|ZP_21850403.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|450080998|ref|ZP_21851443.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|450115830|ref|ZP_21864142.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|450121367|ref|ZP_21866266.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|450154162|ref|ZP_21877579.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|24377367|gb|AAN58694.1|AE014939_1 putative GTP-binding protein [Streptococcus mutans UA159]
gi|392603236|gb|AFM81400.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449152269|gb|EMB55980.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449157338|gb|EMB60782.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449157671|gb|EMB61107.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449165184|gb|EMB68207.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449179091|gb|EMB81319.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449182465|gb|EMB84489.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|449197292|gb|EMB98480.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|449211208|gb|EMC11622.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|449215759|gb|EMC15938.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|449227644|gb|EMC27056.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|449229232|gb|EMC28556.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|449238008|gb|EMC36795.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|449250396|gb|EMC48458.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449256080|gb|EMC53914.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449264294|gb|EMC61640.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
Length = 283
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|417917088|ref|ZP_12560650.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
gi|342830737|gb|EGU65062.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
Length = 283
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 137/255 (53%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKGDLADPVATKEWQDYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L P V LQ R+K +D++ + ++ F D + +
Sbjct: 205 EVTIFGLNYFKEHYPAV----LQERFKQMDLEQEAPEIIMEMTQKLGFREDYDRFYQLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 261 KDVRDGKLGRYTLDR 275
>gi|227824784|ref|ZP_03989616.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352683803|ref|YP_004895787.1| hypothetical protein Acin_0404 [Acidaminococcus intestini RyC-MR95]
gi|226905283|gb|EEH91201.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278457|gb|AEQ21647.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 290
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP ++ +PL+ +G++ +I+ LN+ DM AW TYF + G K +
Sbjct: 33 VDVVVELLDARIPRASANPLLKGLIGSKVKIVALNKTDMADPLATKAWLTYFKEAGLKAL 92
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q G G L + V K KG+ +R IVG PNVGKS+LINR+L +
Sbjct: 93 EVDCQKGRGVKALLTAMREAGQPVIDKWLKKGVRNHPIRIMIVGIPNVGKSTLINRILGK 152
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A RPGVTR +WV GK+LE LD+PG++ + LA+ I E +D
Sbjct: 153 NKAAAQNRPGVTRNTQWVEIGKNLELLDTPGVLWPKFEKVETGFHLAVTGAIKEDVFDRE 212
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKL-----ALHLFNGDTH 231
A+I L+++ R P L Y I +MD ++ + K+ AL G+ +
Sbjct: 213 MAASILLLRLKKRYP----QELGASYGIAVEEMD--TAESLLDKIGRARGALK-SGGEVN 265
Query: 232 QAAF--RILTDFRKGKFGWISLERP 254
++ L DF+ GK G ++LE P
Sbjct: 266 RSKVVDLFLRDFKFGKLGPMTLEEP 290
>gi|419799417|ref|ZP_14324765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
gi|385698101|gb|EIG28487.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
Length = 283
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 137/255 (53%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQDYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L PTV LQ R K +D++ + ++ F D + +
Sbjct: 205 EVTIFGLNYFKEHYPTV----LQERLKQMDLEQEAPEIIMEMTQKLGFREDYDRFYQLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 261 KDVRDGKLGRYTLDR 275
>gi|449898038|ref|ZP_21790366.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
gi|449260334|gb|EMC57836.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
Length = 283
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|290580556|ref|YP_003484948.1| GTP-binding protein [Streptococcus mutans NN2025]
gi|254997455|dbj|BAH88056.1| putative GTP-binding protein [Streptococcus mutans NN2025]
Length = 273
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 4/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 15 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 75 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 135 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
++ + R L RYK ID++ + + F D + +
Sbjct: 195 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQRLGFRDDYDRFYQVFIK 251
Query: 240 DFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 252 DVRDGRLGCYTLDR 265
>gi|293115307|ref|ZP_05790830.2| ribosome biogenesis GTP-binding protein YlqF [Butyrivibrio
crossotus DSM 2876]
gi|292810323|gb|EFF69528.1| ribosome biogenesis GTP-binding protein YlqF [Butyrivibrio
crossotus DSM 2876]
Length = 294
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 10/259 (3%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
D+VIE+ DARIP+S+ +P +D N+ R++++N+ D+ W +F KQG KVI
Sbjct: 35 DIVIELIDARIPMSSRNPDIDDLAKNKYRLILINKSDLADERVTVKWVEFFEKQGIKVIK 94
Query: 62 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 121
+ + G ++ + + + R +G++ R VRA IVG PNVGKS+ IN +
Sbjct: 95 LDSRQRSGMKSVNNAILEVCKEKIERDRKRGIINRPVRAMIVGIPNVGKSTFINSFAGKA 154
Query: 122 MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVAD 181
+PGVT+ +W+R K +E LD+PGI+ + ++ A LA I ++ ++ +
Sbjct: 155 CAKTGNKPGVTKGKQWIRLNKTVELLDTPGILWPKFDNEKIANDLAFIGSINDQILNLTE 214
Query: 182 VAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAAF 235
++ ++ + GI +RY I+ + G T + +A+ L G D +AA
Sbjct: 215 LSLKFIESVKN-DYAGI--FTSRYDIE-EKDDGVTMLGDIAIARGCLKKGGEPDYDKAAA 270
Query: 236 RILTDFRKGKFGWISLERP 254
I DFR GK G IS+E+P
Sbjct: 271 LIFDDFRSGKLGKISIEKP 289
>gi|414155585|ref|ZP_11411896.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
gi|410872810|gb|EKS20749.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
Length = 283
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 136/255 (53%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGEKPKLMILNKVDLADPVATKEWQDYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L P V LQ R+K +D++ + ++ F D + +
Sbjct: 205 EVTIFGLNYFKEHYPAV----LQERFKQMDLEQEAPEIIMEMTQKMGFREDYDRFYQLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 261 KDVRDGKLGRYTLDR 275
>gi|423078053|ref|ZP_17066740.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 21052]
gi|357552433|gb|EHJ34206.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 21052]
Length = 276
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ R+++LN++D+ N W Y+ QG I
Sbjct: 15 VDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAI 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 75 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 135 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 193
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ V+ F + ++ A
Sbjct: 194 DVVGLYGLAYFMAHYP----EALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAE 249
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 250 RLIFDARQGKLGRFTLEKP 268
>gi|451818144|ref|YP_007454345.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784123|gb|AGF55091.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 288
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +++ L + RI++LN+ D+ W Y +V+
Sbjct: 24 VDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDLTDSNVTKEWIDYLTNDIVRVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + L + + + R+KG++ +R +VG PNVGKS+ IN++ +
Sbjct: 84 EVNCLKGDGLKNIKPMLLNLLKEKHDRLRAKGMVNIMMRVMVVGIPNVGKSTFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G +E LD+PG++ + D A+ LA I + D+
Sbjct: 144 NIAKTGDRPGVTKSKQWIKTGAGIELLDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYK--------IDMDGTCGKTFVQKLALHLFNG--DT 230
++A LV R+ L+ RYK +D GK K + G D
Sbjct: 204 ELALKLVD---RLQESYEAKLKERYKLTEVFENPLDTLDAIGK----KRGTLISGGQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A +L +FR GK G ISLERP
Sbjct: 257 NRLAVILLDEFRAGKMGKISLERP 280
>gi|417983479|ref|ZP_12624116.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|417986759|ref|ZP_12627324.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|417992910|ref|ZP_12633262.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|417996266|ref|ZP_12636547.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|417999094|ref|ZP_12639307.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|418002043|ref|ZP_12642170.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|418015272|ref|ZP_12654847.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
gi|410524493|gb|EKP99401.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|410528226|gb|EKQ03085.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|410532701|gb|EKQ07403.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|410535577|gb|EKQ10194.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|410540034|gb|EKQ14556.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|410545194|gb|EKQ19499.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|410551748|gb|EKQ25791.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
Length = 286
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTEDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|418070623|ref|ZP_12707898.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
gi|357540043|gb|EHJ24060.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
Length = 285
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ R+++LN++D+ N W Y+ QG I
Sbjct: 24 VDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 84 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 144 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 202
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ V+ F + ++ A
Sbjct: 203 DVVGLYGLAYFMAHYP----EALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAE 258
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 259 RLIFDARQGKLGRFTLEKP 277
>gi|227432241|ref|ZP_03914237.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352014|gb|EEJ42244.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 284
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 129/252 (51%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ D+RIP S+ +P +D+ +GN+ R+L++ + D+ AW +F QG V+
Sbjct: 26 VDVVFELVDSRIPKSSRNPEVDKLIGNKPRLLIMTKADLADPDQTRAWKKHFEAQGYTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +KG+ + +RA I G PNVGKS+L+NRL+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKKAAQLAKGIQDQPIRAMISGVPNVGKSTLLNRLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKIVWLKTPTKLELLDSPGVLWPKFEDQNIGMKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
D A L+ I + + D + + F D +A+ RIL D
Sbjct: 206 DAALFLINCFREYRPEAIIDRYHLHDNIFDQENVDVLLSITSKLGFKDDYDKASERILND 265
Query: 241 FRKGKFGWISLE 252
RK K G +L+
Sbjct: 266 LRKNKLGAFTLD 277
>gi|191638394|ref|YP_001987560.1| GTP-binding protein [Lactobacillus casei BL23]
gi|385820096|ref|YP_005856483.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|385823296|ref|YP_005859638.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|409997259|ref|YP_006751660.1| ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|418007989|ref|ZP_12647860.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
gi|190712696|emb|CAQ66702.1| GTP-binding protein [Lactobacillus casei BL23]
gi|327382423|gb|AEA53899.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|327385623|gb|AEA57097.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|406358271|emb|CCK22541.1| Ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|410547748|gb|EKQ21974.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
Length = 286
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|418005098|ref|ZP_12645097.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW1]
gi|410547876|gb|EKQ22100.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW1]
Length = 286
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+++V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VNLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + QA ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQAIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|227535119|ref|ZP_03965168.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187260|gb|EEI67327.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 286
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLLAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|306820819|ref|ZP_07454443.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310424|ref|ZP_10829390.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
gi|304551137|gb|EFM39104.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368876|gb|EJP21883.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
Length = 286
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 7/257 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR P+ST +P +D + N+K+I+V ++D+ + Y+ VI
Sbjct: 30 VDLVIEILDARAPISTKNPDIDNMISNKKKIIVFTKKDLTPEDSLKKFIDYYKNNNDYVI 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N GT L +L + + K ++KG++ + +R IVG PNVGKS+LIN+++ +
Sbjct: 90 AINATDKAGTSSLIKLLDNIREENYNKNKNKGIINKNLRIMIVGIPNVGKSTLINQIIGK 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PG+T+ +W++ ++E LD+PGI+ +I D + KL+ I + ++
Sbjct: 150 KSAKTGDTPGITKAQQWLKIKGNIELLDTPGILWPKIEDVSVGNKLSFLGSIKDSVLEIE 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL---HLFNG--DTHQAAF 235
D+ +Q L + L + + ID++ T + K+A + N D ++ +
Sbjct: 210 DIYYEFIQYLLK--NKKQMRLFSEFDIDINETDFEKISDKIATKRGYKKNKEIDYYRLSN 267
Query: 236 RILTDFRKGKFGWISLE 252
+L DFR GK+G I L+
Sbjct: 268 AVLNDFRGGKYGKIQLD 284
>gi|326693009|ref|ZP_08230014.1| GTP-binding protein YlqF [Leuconostoc argentinum KCTC 3773]
gi|339449857|ref|ZP_08653227.1| GTP-binding protein YlqF [Leuconostoc lactis KCTC 3528]
Length = 281
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 12/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D+ +G++ R+L++ + D+ AW +F QG V+
Sbjct: 26 VDVVFELVDARIPESSRNPEVDKLIGSKPRLLIMTKADLADPDQTRAWKQHFEVQGHAVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVKAKKAAQLARGIQDQPIRALIAGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQTVGLKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFV---QKLALHLFNGDTHQAA 234
D L+ I + RY +D D + + QKL F D +A+
Sbjct: 206 DAVLFLLDFFRNYRPEAIIS---RYHLDANVFDEASVQILLDITQKLG---FKDDYEKAS 259
Query: 235 FRILTDFRKGKFGWISLE 252
R+L D RKGK G +L+
Sbjct: 260 ERVLNDLRKGKLGPFTLD 277
>gi|153954033|ref|YP_001394798.1| ribosomal biogenesis GTPase [Clostridium kluyveri DSM 555]
gi|219854647|ref|YP_002471769.1| hypothetical protein CKR_1304 [Clostridium kluyveri NBRC 12016]
gi|146346914|gb|EDK33450.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
gi|219568371|dbj|BAH06355.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 280
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 140/261 (53%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+RDARI ++ +P ++ G++ RI++LN+ D+ + W +Y + +V+
Sbjct: 24 VDVVVEIRDARIIKASKNPDIESICGSKPRIILLNKSDLSEESITKQWISYLLEDNVRVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + L + + + + KG+ RA +VG PNVGKSS IN++ K
Sbjct: 84 AVNCNTGQGLKSIRPMLNELLEEKHNRMKKKGVAKIVDRAMVVGIPNVGKSSFINKMAKS 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PGI+ ++ + + LA I + D+
Sbjct: 144 SIAKIGDRPGVTKSKQWIKTKLGIELMDTPGILWPKLESEETQLNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A +L+++L R P I NRYK+D + +A + +G + ++
Sbjct: 204 NLALMLLKVLCRDYPDRVI----NRYKLDELSEEPLENMNNIAKKRGAILSGKEINYNRV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L +FR GK G ISLERP
Sbjct: 260 SIMLLDEFRGGKLGPISLERP 280
>gi|417002721|ref|ZP_11942025.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479009|gb|EGC82110.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 139/258 (53%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DARIP S+ +P++D+ + ++ R++++N+ D+ ++ W F QG I
Sbjct: 26 VDIVLEIIDARIPNSSRNPMLDEIIADKPRMIIMNKSDLSDPSENKKWIDKFKSQGIPAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ + AK L S+ K K + +R IVG PN GKS+ IN++ K+
Sbjct: 86 AMNSKENVNVDRIYKEAKNLLSEKFKKNEEKNIENPLIRMMIVGVPNSGKSTFINKVSKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T+ +W++ G +++ LD+PG++ + D+ + L+ + I + ++
Sbjct: 146 KGAKVGNRPGITQSKQWIKTGSNIQLLDTPGVLWPKF-DEEVGLHLSFTNAIKDEVLNIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG---TCGKTFVQKLALHLFNGDTH--QAAF 235
D+ ++ L + AL+ RY I+ + T + ++ + GD + A
Sbjct: 205 DLT---LKFLEEMKETKPEALKERYGINPEDPALTIYEAIAKRRGAIISGGDYDYTRTAN 261
Query: 236 RILTDFRKGKFGWISLER 253
IL DFR GK G I+LE+
Sbjct: 262 IILNDFRSGKLGKITLEK 279
>gi|365924909|ref|ZP_09447672.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266411|ref|ZP_14768882.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425487|gb|EJE98450.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 286
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P + Q L N+ ILVL ++D+ W Y+ Q I
Sbjct: 25 VDIVLELVDARLPESSRNPQLAQILQNKPSILVLTKKDLADSQTTAGWVRYYESQKQPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G + ++ + LA + ++ + KG+L + ++ +G PNVGKS+L+N L+K+
Sbjct: 85 AVNSTTGSLKIIEEKIKQVLADKIALQAQ-KGILHKRIKVMCIGIPNVGKSTLLNHLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ GKD+ LD+PGI+ + D KLA+ I E Y
Sbjct: 144 NVAQVGNRPGVTKSQQWLKAGKDMLLLDTPGILWPKFEDPMIGKKLALTGAIKETLYAKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNGDTHQAAFR 236
D+A L++ + L+ YK+ D + V L L F D +A+ R
Sbjct: 204 DIALYLLEHFCQFAPAN---LKEYYKL-TDSDLSLSTVDLLLLITKKIGFKDDYDRASER 259
Query: 237 ILTDFRKGKFGWISLERPPR 256
++ + RKGK G +L+ P
Sbjct: 260 MILECRKGKLGRYTLDTVPE 279
>gi|340749990|ref|ZP_08686837.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
mortiferum ATCC 9817]
gi|229419633|gb|EEO34680.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
mortiferum ATCC 9817]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 139/264 (52%), Gaps = 14/264 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+D+V+EV DARIPLS+ +P + + N+KR++VLN+ D++ + W YF + +
Sbjct: 27 IDIVLEVVDARIPLSSKNPDITVFAKNKKRVIVLNKSDLVDKKELAYWKKYFKENNFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G L + ++++ K +KGL R +VG PNVGKS LINR++
Sbjct: 87 VLEISAETGFNIKGLYSIIDKVSAEKKEKMMAKGLRKVNTRLMVVGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WVR + LE LD PGI+ + + LAI I +
Sbjct: 147 GKNSAGVGNKPGFTKGKQWVRIKEGLELLDMPGILWPKFESEEVGQNLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLAL--HLFNG----D 229
+ ++A IL+ + R + L+ RYK+ D G+ ++K+AL +FN +
Sbjct: 207 IEEIAGILISKMIRYEMWDV--LKERYKLLDEDKSEIMGE-ILEKIALRCKMFNKGESLN 263
Query: 230 THQAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R + G L+R
Sbjct: 264 VQQAAYTVLRDYRGCRIGKFGLDR 287
>gi|450011007|ref|ZP_21828933.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|450023399|ref|ZP_21830596.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
gi|449189790|gb|EMB91418.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|449193495|gb|EMB94877.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
Length = 283
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLIKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|301066444|ref|YP_003788467.1| GTPase [Lactobacillus casei str. Zhang]
gi|300438851|gb|ADK18617.1| Predicted GTPase [Lactobacillus casei str. Zhang]
Length = 286
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTRSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|291542666|emb|CBL15776.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus bromii
L2-63]
Length = 290
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 135/260 (51%), Gaps = 6/260 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V E+ DARIP+S+ +P + + + N+ R+++LN+ DM + W YF KQ I
Sbjct: 28 VDAVAEIIDARIPVSSRNPDLAKLVQNKPRVILLNKCDMANQTATKMWIDYFKKQNLVAI 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G K + + S + + KG++ +R IVG PNVGKSS IN+++K+
Sbjct: 88 PVDCKSGRGLDKFAPAVNTVMSHKIARLKEKGMVNPTIRIMIVGIPNVGKSSFINKMVKK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W K+LE LD+PG++ + D+ LA + ++ D+
Sbjct: 148 NRAKVEDRPGVTRGNQWYTIAKNLEMLDTPGVLWPKFDDKTVGEHLAFTGAVKDQILDIE 207
Query: 181 DVAAILVQMLARI-PTVGIT--ALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAA 234
+A L+ + + P IT L+N ++D + K L +G DT +AA
Sbjct: 208 LLAVRLLDFIKELKPADFITRFKLENEDVENIDSYELLKMIGKKRGMLVSGGEIDTERAA 267
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR K G I++E P
Sbjct: 268 IMLLDEFRSAKLGRITVEMP 287
>gi|403386846|ref|ZP_10928903.1| GTPase YlqF [Clostridium sp. JC122]
Length = 282
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 19/267 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARI S+ +P ++ N+ RI++LN+ D+ W + + TKV+
Sbjct: 24 VDAVIEIRDARIVKSSANPDIEDICQNKPRIILLNKSDLSEEKVTKQWVKELSNEHTKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G+G + + + + R+KG++ R +VG PNVGKS+ IN+L K
Sbjct: 84 SVNCLKGLGLKNIKPALDEMLKEKHDNLRNKGVVNIVTRVMVVGIPNVGKSTFINKLAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR +W++ +E +D+PG++ + D+ + LA I + D+
Sbjct: 144 NIAKTGDKPGVTRNKQWIKTKIGIELMDTPGVLWPKFEDETVGLDLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLA-----------RIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGD 229
++A L++ L ++P + +AL+N MD K + + N D
Sbjct: 204 ELALKLIETLQVSYPERLKERYKLPELSESALEN-----MDNIGRK---RGAVIARGNID 255
Query: 230 THQAAFRILTDFRKGKFGWISLERPPR 256
++ A +L +FR GK G ISLE+P +
Sbjct: 256 YNRVAVMLLDEFRGGKLGNISLEKPEK 282
>gi|418576371|ref|ZP_13140517.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325433|gb|EHY92565.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 277
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 112/183 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + W +YF ++G +
Sbjct: 15 VDVVFELVDARIPYSSRNPMIDEVIQQKPRVVILNKKDMANLKELEKWESYFKEKGFYPV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G ++ + A + K + KGL PRA+RA IVG PNVGKS+LIN+L +
Sbjct: 75 AIDAKHGKGLKQVEQTAIKATKEKFEKEKQKGLKPRAIRAMIVGIPNVGKSTLINKLANK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVT+ +W++ G+ L+ LD+PGI+ + DQ KL++ I + +
Sbjct: 135 SIAKTGNTPGVTKQQQWIKVGQSLQLLDTPGILWPKFEDQLVGKKLSVTGAIKDSIVHLD 194
Query: 181 DVA 183
+VA
Sbjct: 195 EVA 197
>gi|116617875|ref|YP_818246.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381336352|ref|YP_005174127.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116096722|gb|ABJ61873.1| Ras superfamily GTP-binding protein YlqF [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|356644318|gb|AET30161.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 284
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ D+RIP S+ +P +D+ +GN+ R+L++ + D+ AW +F QG V+
Sbjct: 26 VDVVFELVDSRIPESSRNPEVDKLIGNKPRLLIMTKADLADPDQTRAWKKHFEAQGYTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + +KG+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKKAAQLAKGIQDQPIRAMISGVPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKIAWLKTPTKLELLDSPGVLWPKFEDQNIGMKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---MDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
D A L+ I RY ++ D + + F D +A+ RI
Sbjct: 206 DAALFLINFFREYRPEAII---ERYHLNDNIFDQENVDVLLSITSKLGFKDDYDKASERI 262
Query: 238 LTDFRKGKFGWISLE 252
L D RK K G +L+
Sbjct: 263 LNDLRKNKLGAFTLD 277
>gi|199599537|ref|ZP_03212925.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|258508403|ref|YP_003171154.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|385828073|ref|YP_005865845.1| putative GTPase [Lactobacillus rhamnosus GG]
gi|199589578|gb|EDY97696.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|257148330|emb|CAR87303.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|259649718|dbj|BAI41880.1| putative GTPase [Lactobacillus rhamnosus GG]
Length = 285
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++EV DAR P S+ +P++D+ +G++ R+++LN++D+ N W Y+ QG I
Sbjct: 24 VDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ + A L ++ +++++G+ ++A +G PNVGKS+++NRL+++
Sbjct: 84 AIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 144 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 202
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
DV + L +A P AL+ Y + D+ V+ F + ++ A
Sbjct: 203 DVVGLYGLNYFMAHYP----AALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAE 258
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 259 RLIFDARQGKLGRFTLEKP 277
>gi|430750335|ref|YP_007213243.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
gi|430734300|gb|AGA58245.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
Length = 292
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 141/268 (52%), Gaps = 17/268 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+P S+ +P++D+ L + R+++LN+ D+ + W F + G +
Sbjct: 24 IDAVIELLDARVPHSSRNPMIDEILRGKPRLVLLNKADLADQRATDRWIAAFREDGLDSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAVRAGIVGYPNVGKSSLINRLLK 119
+ G G ++S K L + + ++G++ PRAVR IVG PNVGKS+LINRL
Sbjct: 84 AVDAAGGQGIKEISARVKKLVAPQWERMAARGVVKPRAVRVLIVGIPNVGKSTLINRLAG 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R + RPGVT+ +W++ G ++E LD+PGI+ + DQ ++LA+ I E ++
Sbjct: 144 RSVAATGDRPGVTKGQQWIKVGGEMELLDTPGILWPKFDDQTVGMRLAVIGSIREEILNL 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKID----MDGTCGKTFVQKLAL------HLFNG- 228
++A V+ LA A R+ ++ D + V L L +G
Sbjct: 204 EEIAFFAVKTLA---GKYWDAFVERFGLEGGPPEDPDDPRQIVDVLERIGRKRGCLVSGG 260
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ +L D R GK G I+LE P
Sbjct: 261 RVDLEKASGVLLRDLRSGKLGRITLEEP 288
>gi|449921541|ref|ZP_21798976.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
gi|449156980|gb|EMB60434.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
Length = 283
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK---TFVQKLALHLFNGDTHQAAFRI 237
++ + R + L++ ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYPERL--LEHYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQVF 259
Query: 238 LTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 260 IKDVRDGRLGCYTLDR 275
>gi|402839395|ref|ZP_10887885.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
gi|402270297|gb|EJU19564.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
Length = 285
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+++V+E+ DAR P+S+ +P +D + + +++VL ++D+ D + +Y+ ++G K +
Sbjct: 28 VNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDLADEEDMGKFISYYKEKGIKSV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G L + + + + K +++G++ + +R IVG PNVGKS+LIN+++ +
Sbjct: 88 AINSTKKTGISPLINILEQIKEENYQKNKARGIIKKPLRIMIVGIPNVGKSTLINQIIGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PG+T+ +W++ D+E LD+PGI+ +I D+ A KLA I ++ ++
Sbjct: 148 KSAKTGNTPGITKSQQWLKIKGDIELLDTPGILWPKIEDKITAQKLAFLGSIRDQVIEIE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGT----CGKTFVQKLALHLFNG--DTHQAA 234
D+ ++ L I L ++I+ D T + +K + L N D + A
Sbjct: 208 DIYYEFIKFL--IENKKQKNLFEEFEINFDETDFEKISEIIAKKRGVLLKNNEVDYFRLA 265
Query: 235 FRILTDFRKGKFGWISLER 253
+L +FR GK+G I L+
Sbjct: 266 NIVLNEFRNGKYGKIQLDE 284
>gi|299144233|ref|ZP_07037313.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518718|gb|EFI42457.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 279
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 16/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D IE+ D+RIP+S+ +PL+++ L N+K +LVLN+ D+ + WA + K I
Sbjct: 24 VDFYIEIIDSRIPISSRNPLLNKVLSNKKGLLVLNKSDLSEESQNRKWAEKLSTDNKKAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ +A+++ K + KG+ +RA IVG PN GKS+ IN + KR
Sbjct: 84 LYSAAKPNVNKIINESMNLMAAEIE-KSKEKGINMGPLRAMIVGIPNSGKSTFINGISKR 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ + LD+PG++ + DQ A+ LA I + ++
Sbjct: 143 KSAKTGNRPGVTKTNQWIKLNPKIHLLDTPGVLWPKFEDQNIALNLAFTGAIKD---EIM 199
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKL-ALHLFNG--------DTH 231
D + ++++ R+ + + L++RYK+ T KT V+ + A+ + G D
Sbjct: 200 DTETLCLKLIERLLGLDSSILEDRYKVT---TAEKTPVEIMEAIGMIRGAKLRGNEIDYT 256
Query: 232 QAAFRILTDFRKGKFGWISLER 253
+ + IL +FRKG G I+LER
Sbjct: 257 KVSNLILDEFRKGVLGRITLER 278
>gi|374997103|ref|YP_004972602.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
gi|357215469|gb|AET70087.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
Length = 277
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P++ + LGN+ R+L+LN+ D+ + + + W T+ K+ + V
Sbjct: 24 VDVVLELADARIPASSRNPMLHKLLGNKTRLLLLNKADLAAPNETSKWLTHL-KESSPVF 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ GMG ++ + + K+ +KG+ P+ ++A IVG PN+GKSSLIN+L
Sbjct: 83 AVSATKGMGIKQIVPELEQMVRAKQAKQAAKGIRPQLIKAMIVGIPNIGKSSLINQLTGG 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A +PGVTR +WVR + +E LD+PG++ + D KLA + + +D+
Sbjct: 143 AQVKVANKPGVTRGNQWVRIHERVELLDTPGMLWPKFDDLDVGRKLAALGAVKDDVFDLE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQAAFRIL 238
++AA +++ L + +RYK + ++ +K + G DT +AA L
Sbjct: 203 ELAAWVLEWL----NLNSPNSLSRYKAEDSEVTLESLGRKRGCLIHGGRVDTLKAARIFL 258
Query: 239 TDFRKGKFGWISLE 252
+ R G+ G ++++
Sbjct: 259 KELRTGQLGPVTMD 272
>gi|363892710|ref|ZP_09319870.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
gi|361963144|gb|EHL16230.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
Length = 285
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 139/259 (53%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+++V+E+ DAR P+S+ +P +D + + +++VL ++D+ D + +Y+ ++G K +
Sbjct: 28 VNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDLADEEDMGKFISYYKEKGIKSV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G L + + + + K ++KG++ + +R IVG PNVGKS+LIN+++ +
Sbjct: 88 AINSTKKTGISPLINILEQIKEENYQKNKAKGIIKKPLRIMIVGIPNVGKSTLINQIIGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PG+T+ +W++ D+E LD+PGI+ +I D+ A KLA I ++ ++
Sbjct: 148 KSAKTGNTPGITKSQQWLKIKGDIELLDTPGILWPKIEDKITAQKLAFLGSIRDQVIEIE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGT----CGKTFVQKLALHLFNG--DTHQAA 234
D+ ++ L I L ++I+ D T + +K + L N D A
Sbjct: 208 DIYYEFIKFL--IENKKQKNLFEEFEINFDETDFEKISEIIAKKRGVLLKNNEVDYFILA 265
Query: 235 FRILTDFRKGKFGWISLER 253
+L +FR GK+G I L+
Sbjct: 266 NIVLNEFRNGKYGKIQLDE 284
>gi|15924233|ref|NP_371767.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926826|ref|NP_374359.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
N315]
gi|148267734|ref|YP_001246677.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH9]
gi|150393792|ref|YP_001316467.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH1]
gi|156979564|ref|YP_001441823.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315601|ref|ZP_04838814.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006030|ref|ZP_05144631.2| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795701|ref|ZP_05644680.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|258415925|ref|ZP_05682195.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|258421687|ref|ZP_05684611.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|258434843|ref|ZP_05688917.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|258444581|ref|ZP_05692910.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|258447586|ref|ZP_05695730.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|258449428|ref|ZP_05697531.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|258454807|ref|ZP_05702771.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282892731|ref|ZP_06300966.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|282927585|ref|ZP_06335201.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|295406178|ref|ZP_06815985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297244406|ref|ZP_06928289.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|384864470|ref|YP_005749829.1| hypothetical protein ECTR2_1099 [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150386|ref|YP_005741950.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|415691093|ref|ZP_11453332.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650895|ref|ZP_12300658.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|417802680|ref|ZP_12449737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|417892142|ref|ZP_12536196.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|418424383|ref|ZP_12997505.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427378|ref|ZP_13000390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430219|ref|ZP_13003135.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433184|ref|ZP_13005961.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436855|ref|ZP_13008657.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439727|ref|ZP_13011434.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442779|ref|ZP_13014381.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445838|ref|ZP_13017314.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448782|ref|ZP_13020174.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451606|ref|ZP_13022940.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454662|ref|ZP_13025924.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457538|ref|ZP_13028741.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418638136|ref|ZP_13200439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654623|ref|ZP_13216519.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|418661562|ref|ZP_13223147.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878092|ref|ZP_13432327.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880920|ref|ZP_13435139.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883849|ref|ZP_13438044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418894942|ref|ZP_13449037.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914341|ref|ZP_13468313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920320|ref|ZP_13474253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931313|ref|ZP_13485154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418991105|ref|ZP_13538766.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419785002|ref|ZP_14310760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768073|ref|ZP_18195366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|443636965|ref|ZP_21121058.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
gi|13701043|dbj|BAB42338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247013|dbj|BAB57405.1| similar to GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|147740803|gb|ABQ49101.1| Ras superfamily GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus JH9]
gi|149946244|gb|ABR52180.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
aureus JH1]
gi|156721699|dbj|BAF78116.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789673|gb|EEV28013.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|257839261|gb|EEV63735.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|257842373|gb|EEV66798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|257849204|gb|EEV73186.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|257850074|gb|EEV74027.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|257853777|gb|EEV76736.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|257857416|gb|EEV80314.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|257863190|gb|EEV85954.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282590588|gb|EFB95665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|282764728|gb|EFC04853.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|285816925|gb|ADC37412.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|294968766|gb|EFG44788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297178436|gb|EFH37682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|312829637|emb|CBX34479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131037|gb|EFT87021.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727079|gb|EGG63535.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|334274316|gb|EGL92638.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|341858109|gb|EGS98910.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|375014448|gb|EHS08129.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023360|gb|EHS16823.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038744|gb|EHS31705.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694214|gb|EHT18579.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694748|gb|EHT19112.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714595|gb|EHT38794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714936|gb|EHT39134.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723227|gb|EHT47352.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377731813|gb|EHT55866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757843|gb|EHT81731.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765679|gb|EHT89528.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383363603|gb|EID40935.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718614|gb|EIK06572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718965|gb|EIK06921.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720290|gb|EIK08202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725624|gb|EIK13228.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727959|gb|EIK15459.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730689|gb|EIK18050.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735766|gb|EIK22876.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737444|gb|EIK24510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|387737998|gb|EIK25052.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744487|gb|EIK31251.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745777|gb|EIK32527.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747270|gb|EIK33979.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348710|gb|EJU83689.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|408423435|emb|CCJ10846.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408425425|emb|CCJ12812.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408427413|emb|CCJ14776.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408429400|emb|CCJ26565.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408431388|emb|CCJ18703.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408433382|emb|CCJ20667.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408435373|emb|CCJ22633.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408437358|emb|CCJ24601.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443406942|gb|ELS65512.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
Length = 294
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++D+ + + R+++LN++DM ++ + + W +F +G +
Sbjct: 24 VDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ A ++ + ++KGL PRA+RA IVG PNVGKS+LIN+L KR
Sbjct: 84 SVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ L+ LD+PGI+ + D+ KL++ I + +
Sbjct: 144 SIAQTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM 209
+VA + L + + L++ Y I++
Sbjct: 204 EVAIYGLNFLIQ---NDLARLKSHYNIEV 229
>gi|407718252|ref|YP_006795657.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
gi|407242008|gb|AFT81658.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
Length = 284
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 12/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D+ +G++ R+L++ + D+ W YF +G V+
Sbjct: 26 VDVVFELVDARIPSSSRNPEVDKLIGSKPRLLIMTKADLADPDQTRLWKAYFESEGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ S + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPKTPQLVTKAARRAVSSKKEAQLARGIHDQPIRAMISGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ+ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQSIGMKLALTGAVKDAIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-----DMDGT-CGKTFVQKLALHLFNGDTHQAA 234
D A L+ A A+ +RY + D D +KL F D +A+
Sbjct: 206 DAALFLI---AFFRNYRPKAIIDRYHLTTEIFDEDNVQILLAITEKLG---FKDDYDKAS 259
Query: 235 FRILTDFRKGKFGWISLE 252
RIL D RKGK G +L+
Sbjct: 260 ERILIDLRKGKLGSFTLD 277
>gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
gi|156867399|gb|EDO60771.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium leptum
DSM 753]
Length = 289
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 6/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V E+ DARIP+S+ +P + + + N+ RI+++N+ DM + W + + K+G I
Sbjct: 28 VDAVAEIIDARIPVSSRNPELHKIIENKPRIILMNKCDMADPSQTARWVSCYQKEGVLAI 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G G + + L D ++ KG++ R +R IVG PNVGKSS INR+ K+
Sbjct: 88 PVDCKSGRGLNQFIPKVRELLKDRIIQWEQKGMVNRTIRVMIVGIPNVGKSSFINRMAKQ 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPGVTR +W GK + LD+PG++ + D KLA + ++ D
Sbjct: 148 NRAKVEDRPGVTRGNQWFTIGKAFDLLDTPGVLWPKFDDPNVGEKLAFTGAVKDQIVDTE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+A+ L+++L + + A K D+ G ++ + L +G DT +A+
Sbjct: 208 QLASRLLEVLRDEYSAMLAARYKLEKYDLRPLQGYELLELIGRKRGMLASGGEIDTERAS 267
Query: 235 FRILTDFRKGKFGWISLER 253
+L +FR K G I+LE+
Sbjct: 268 IMVLDEFRSAKLGKITLEQ 286
>gi|403069205|ref|ZP_10910537.1| hypothetical protein ONdio_06380 [Oceanobacillus sp. Ndiop]
Length = 283
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 137/264 (51%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DAR PLS+ +P++ Q L ++ +++VL ++D+ + W +F ++ I
Sbjct: 24 VDFVMELVDARAPLSSQNPMLQQVLQHKSKMIVLMKKDLADPRETEKWINHFREKEVPAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ ++AK L K KG+ PR RA IVG PNVGKS+LINRL +
Sbjct: 84 AVDVNNKADINRVIQMAKELGQVKMEKLLKKGIKPRPSRAMIVGIPNVGKSTLINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPG+T+ W++ KD E LD+PGI+ + DQ +LA I ++ +
Sbjct: 144 KIAKTGDRPGITKQQLWIKVKKDFELLDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQ 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKID--MD------GTCGKTFVQKLALHL-FNGDT 230
D+ A ++ M P L+ RY ID MD GK Q+ AL N +
Sbjct: 204 DITAFVIDYMREYYP----EQLEERYTIDRTMDDMLEIFNAIGK---QRGALESGGNVNF 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+ + ++ D R G+ G I+LE P
Sbjct: 257 DKVSDVVIQDLRTGRLGHITLETP 280
>gi|300854481|ref|YP_003779465.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434596|gb|ADK14363.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 284
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARI S+ +P +D G++ RI++LN+ D+ + W Y + + K +
Sbjct: 24 VDAVIEIRDARIIRSSKNPEVDDICGSKPRIILLNKNDLSEDSVTKKWIKYLSNKNIKAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L L + + + +KG+L R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSNTGQGIKSIKPLLDELLKEKHDRMNNKGILGITDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVTR +W++ +E +D+PGI+ ++ Q + LA I + D+
Sbjct: 144 SIAKTGDKPGVTRSKQWIKTKLGIELMDTPGILWPKLESQETQLHLAFTGAIKDEIMDIE 203
Query: 181 DVA-AILVQMLARIPTVGITALQNRYK---IDMDGTCGKTFVQKLALHLFNG---DTHQA 233
++A ++L + R P L +RYK + D + + + +G D ++
Sbjct: 204 ELALSLLKDLCERYP----KRLMDRYKLSELSEDPLVNMDNIARKRGAIVSGGKIDYNRV 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL +FR GK G ISLE P
Sbjct: 260 SVIILDEFRGGKLGPISLEDP 280
>gi|260588680|ref|ZP_05854593.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|331081971|ref|ZP_08331099.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260541155|gb|EEX21724.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|330405566|gb|EGG85096.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 281
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 144/260 (55%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IEV DARIP S+ +P +D+ N+ R+++LN+ D+ + WA YF +G V+
Sbjct: 24 IDLIIEVVDARIPFSSRNPDIDELGKNKARLILLNKSDLADERENEKWAEYFKSKGYYVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + + + + R +G++ R +RA +VG PNVGKS+ IN +
Sbjct: 84 KLNAKSGAGIKGVLPVVMESCKEKLERDRKRGIINRPIRAMVVGIPNVGKSTFINAFAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W+R K++E LD+PGI+ + DQ+ KLA+ I + ++
Sbjct: 144 ACTKTGNKPGVTKGKQWIRINKNVELLDTPGILWPKFEDQSVGAKLAMVGSIKDEILNLE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
+++ L++ L G+ L RY I+ + + ++++A + + G D +AA
Sbjct: 204 ELSLELLKYLHE-SYEGV--LTKRYDIE-ESENALSMLEQVAENRKCIQKGNELDYLKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G I+LE+P
Sbjct: 260 NILLEEFRNGKIGKITLEKP 279
>gi|329768913|ref|ZP_08260340.1| ribosome biogenesis GTP-binding protein YlqF [Gemella sanguinis
M325]
gi|328836630|gb|EGF86288.1| ribosome biogenesis GTP-binding protein YlqF [Gemella sanguinis
M325]
Length = 292
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 149/259 (57%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR PLS+ + +D+ + ++K+I++ N+ D+ + W YF +G V+
Sbjct: 24 VDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKIDLCDRKETVKWKNYFENKGYVVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+++ + K+ AK ++ ++ +KG+ PRA+R+ ++G PNVGKS+ IN+L+K+
Sbjct: 84 YTDAKNSNNLNKVIDKAKEELAEKIARQVAKGIKPRAIRSMVIGVPNVGKSTFINKLIKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ +W++ KD+E LD+PGI+ + +Q KL++ I + +
Sbjct: 144 NVANTANKPGVTKKQQWLKLNKDIELLDTPGILMPKFDNQEIGKKLSLIGSIKDDITPLD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK-TFVQKLALHLFN---GD-THQAAF 235
DV+ L+++L + L N YK+++ T ++K+A F GD + +
Sbjct: 204 DVSLYLIELLK---NNYLENLNNHYKLNVKAEDENLTIMEKIAEKRFKKIGGDYDYDSTI 260
Query: 236 RIL-TDFRKGKFGWISLER 253
++L DFR KFG I+L+
Sbjct: 261 KLLIQDFRTQKFGLITLDN 279
>gi|421879212|ref|ZP_16310684.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
gi|390446880|emb|CCF26804.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
Length = 279
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIP S+ +P +D+ +G + R+L++ + D+ W F G V+
Sbjct: 26 VDVAFELVDARIPESSRNPEVDKLIGGKPRLLIMTKADLADPEQTRQWKAKFESDGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLNTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQA +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ I A RY ++ + LA+ F D +A+ R+
Sbjct: 206 DAALFLISFFRDYRPEAIVA---RYHLEENAFEQDNVQILLAITNKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLER 253
L D RKGK G +L+
Sbjct: 263 LNDLRKGKLGAFTLDE 278
>gi|315648160|ref|ZP_07901261.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
gi|315276806|gb|EFU40149.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
Length = 288
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 16/267 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+PLS+ +P++D+ L + R++++N+ D+ W YF +
Sbjct: 24 IDAVIELIDARLPLSSRNPMIDEILQGKPRLIIMNKADLADPEVTRQWQAYFKENSLTAF 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G + K L + K+ +KG+ PRA+R IVG PNVGKS+LINRL R
Sbjct: 84 PVDASTGTGIKDIPNQIKLLLKEKIDKQIAKGMNPRAMRVLIVGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ G ++E LD+PGI+ + DQ +LA+ I E +V
Sbjct: 144 NIAETGDRPGVTKGQQWIKVAGGEMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNV 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-----DMDG-----TCGKTFVQKLALHLFNG- 228
D+A ++ + + R+ + D+D + +K + G
Sbjct: 204 EDIAYFAIKYFS---NYYWETMSERFDLKERPTDLDNPDEIVAVMEAVGRKRGCIVSGGR 260
Query: 229 -DTHQAAFRILTDFRKGKFGWISLERP 254
D +A+ L + R GK G S+E P
Sbjct: 261 VDLEKASSIFLRELRAGKLGRYSMESP 287
>gi|363895220|ref|ZP_09322240.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
gi|361959977|gb|EHL13238.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
Length = 285
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+++V+E+ DAR P+S+ +P +D + + +++VL ++D+ + + +Y+ ++G K +
Sbjct: 28 VNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDLADEENIGKFISYYKEKGIKSV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G +L + + + + K ++KG++ + +R IVG PNVGKS+LIN+++ +
Sbjct: 88 AVNATKKSGISQLINILEQIKEENYQKNKAKGIIKKPLRIMIVGIPNVGKSTLINQIIGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PG+T+ +W++ D+E LD+PGI+ +I D+ A KLA I ++ ++
Sbjct: 148 KSAKTGNMPGITKSQQWLKIKGDIELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVIEIE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQAA 234
D+ ++ L I L +KI+ D T + + +A L D + A
Sbjct: 208 DIYYEFIKFL--IENKKQKNLFEEFKINFDETDFEKISEIIAKKRGVLLKSDEIDYFRLA 265
Query: 235 FRILTDFRKGKFGWISLER 253
+L +FR GK+G I L+
Sbjct: 266 NIVLNEFRNGKYGKIQLDE 284
>gi|375091720|ref|ZP_09738008.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
gi|374562607|gb|EHR33934.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
Length = 283
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 10/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ D+RIP+S+ +P++D+ LG+ RI++LN+ DM + + W YF ++ VI
Sbjct: 24 VDIVAEIVDSRIPISSRNPVIDKILGDFPRIIILNKVDMANPKETRKWIKYFNEKNISVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N T L ++A+ + KR+ K + ++ +VG PNVGKS+ IN + +R
Sbjct: 84 EFNSTKDKKTNDLYKIARKTLEPLFAKRKEKQIKDETIKMMVVGIPNVGKSTFINNVSQR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR+ +W+R +L LD+PG++ ++ LA I + ++
Sbjct: 144 KGTKVGNRPGVTRMNQWIRTSSNLLLLDTPGVLWPKLDLPDGGKNLAFTGAIKDEILEIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL------FNGDTHQAA 234
D+ +++ ++ + L NRY I+ D T + + +AL D + A
Sbjct: 204 DLC---FELIKKLQSTYYEDLINRYGIENDLTTIE-IMDSIALKFGAIKRNKEIDYFKVA 259
Query: 235 FRILTDFRKGKFGWISLE 252
IL DFRK + G I+LE
Sbjct: 260 NIILDDFRKVRIGRITLE 277
>gi|259503397|ref|ZP_05746299.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus antri
DSM 16041]
gi|259168642|gb|EEW53137.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus antri
DSM 16041]
Length = 290
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 137/263 (52%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P + G + R+L++ + D+ W +FA QG V+
Sbjct: 25 VDIVFELVDARVPYSSQNPEVALAAGEKPRLLIMTKTDLADPDRLAEWQRFFADQGQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + ++ +K + D V+ +KGL R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRRHNVSKLVTAKSKEILHDQLVQEAAKGLKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + + LA+ I + Y
Sbjct: 145 NVAQTGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFASPKRGVMLALSGAIKDSLYPKD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTH 231
DVA L + A P + L+ RY++ D+D T KL F D
Sbjct: 205 DVALFALAYLRAHQPDL----LKKRYRLTDQDLDPAVSDPDLLLTITNKLG---FRDDYD 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ R++ D RKGK G I++E P
Sbjct: 258 RASERLIFDLRKGKLGPITMEVP 280
>gi|417920255|ref|ZP_12563767.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|342829906|gb|EGU64247.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 283
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQEYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEDVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V ++ + P LQ RYK ++++ + ++ F D + +
Sbjct: 205 EVTIFGLEYFKSHYP----KELQERYKQMNLEQEAPEIIMEMTQRLGFRDDYDRFYSLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDVRDGRLGRYTLDR 275
>gi|301062355|ref|ZP_07203018.1| ribosome biogenesis GTP-binding protein YlqF [delta proteobacterium
NaphS2]
gi|300443559|gb|EFK07661.1| ribosome biogenesis GTP-binding protein YlqF [delta proteobacterium
NaphS2]
Length = 283
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 18/263 (6%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
DV+ E+ DARIPLS+ P +D+ + + R++VLN+ D+ W YF ++G
Sbjct: 25 DVIFEILDARIPLSSRDPRIDRVIHQKSRVVVLNKCDLSDENGDRVWIEYFKRKGFTAFR 84
Query: 62 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLP----RAVRAGIVGYPNVGKSSLINRL 117
N G G +L+ A+ + + K RSK +P RAV A +VG PNVGKS++IN +
Sbjct: 85 VNATRGEGIKRLAGAARGMV--LAGKSRSK--VPKDQKRAVSAMVVGIPNVGKSTIINAV 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+R A +PGVT+V + V LE LD+PGI+ R D+ A +KLA+ +G
Sbjct: 141 AGKRKTRIANKPGVTKVKQRVTTPLGLELLDTPGILWPR-DDEKALLKLAM---VGAVKD 196
Query: 178 DVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL-----HLFNGDTHQ 232
+V D+ ++ + +L R+ + L++ Y +++ G ++++AL G H
Sbjct: 197 EVLDLESLSMSLLERLKVLTSEKLRDVYGVEVAGKESYEILEEIALKRGCIQKNRGVDHM 256
Query: 233 AAFR-ILTDFRKGKFGWISLERP 254
R +L DFRKGK G I+LE P
Sbjct: 257 RVSRMVLGDFRKGKLGRITLEMP 279
>gi|319947077|ref|ZP_08021311.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|319747125|gb|EFV99384.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 290
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 32 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQEYFESQGIKTL 91
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 92 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 151
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 152 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEDVALKLALTGAIKDQLLPMD 211
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V ++ + P LQ RYK ++++ + ++ F D + +
Sbjct: 212 EVTIFGLEYFKSHYP----KELQERYKQMNLEQEAPEIIMEMTQRLGFRDDYDRFYSLFV 267
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 268 KDVRDGRLGRYTLDR 282
>gi|354807458|ref|ZP_09040925.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
gi|354514040|gb|EHE86020.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
Length = 282
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 2/256 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++E+ DAR+P S+ +P++ + N+ +L++N+ DM W F K+G I
Sbjct: 24 VDLILEIVDARVPESSINPMIAELGQNKPTLLIMNKADMADAKRTQQWIETFKKRGITAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ ++A+ + +D K+R+KG+L +RA VG PNVGKS+++NRL+++
Sbjct: 84 ALDAQHKSKLPQIEKVAQEILADKLAKKRAKGILNPVIRAMCVGVPNVGKSTILNRLVQK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G+ LE LD+PG++ + D A KLA+ I + Y
Sbjct: 144 NIAVTGNRPGVTKNQQWLKAGQSLELLDTPGVLWPKFEDPAVGNKLALTGAISDAIYHPD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAAFRILT 239
DV + + + +++ + L L F D + + +T
Sbjct: 204 DVVVYALDYFKDFYPQQLVKEYHVTPAELE-MPAPDLIMALTKRLGFKEDYDRFCMKFIT 262
Query: 240 DFRKGKFGWISLERPP 255
D RKGK G +L+ P
Sbjct: 263 DARKGKLGRFTLDIVP 278
>gi|256847170|ref|ZP_05552616.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
gi|256715834|gb|EEU30809.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
Length = 290
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 140/263 (53%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P + + G++ R+L+L + D+ W +FA V+
Sbjct: 25 VDIVFELVDARIPYSSQNPEVARAAGDKPRLLILTKTDLADPQVTQEWLNFFAHHDQPVL 84
Query: 61 FSNGQLGMGTMKL-SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + G K+ ++ A+++ D ++KG+ RA+RA VG PNVGKS+L+N L+K
Sbjct: 85 ALDSR-GRNVAKVVTQKAQSILVDKLAAEQAKGMKKRAIRAMCVGVPNVGKSTLLNHLVK 143
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ + RPGVT +W+R LE LD+PG++ + + + LA+ I + +
Sbjct: 144 KNVAATGNRPGVTTGQQWLRSSAQLELLDTPGVLWPKFATERQGTLLALTGAIKDSLFAK 203
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTH 231
DVA + L + + L +RY++ D+D T T QK+ F D
Sbjct: 204 DDVALFALHYLRKH---RLAELMSRYRLSKADVDETVSDPDLLLTITQKMG---FRDDYD 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ R++ + RKGK G ISLE P
Sbjct: 258 RASERLIFELRKGKLGKISLETP 280
>gi|387786219|ref|YP_006251315.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449976138|ref|ZP_21816116.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|450098219|ref|ZP_21857901.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|450171566|ref|ZP_21884063.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
gi|379132620|dbj|BAL69372.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449175866|gb|EMB78242.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|449221787|gb|EMC21544.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|449243888|gb|EMC42289.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
Length = 283
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 136/257 (52%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
++ + R L RYK I ++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYP---ERLLERYKGIGLEEEAPEIIMSMTQKLG---FRDDYDRFYQV 258
Query: 237 ILTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 259 FIKDVRDGRLGCYTLDR 275
>gi|422338234|ref|ZP_16419194.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355372872|gb|EHG20211.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 289
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 142/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA+ L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVASSLLRKM--LEQGRWESLKERYKLLEEDRDDNVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 ILQAAYTLLRDYRVAKLGKFGLDE 288
>gi|254302953|ref|ZP_04970311.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323145|gb|EDK88395.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 289
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 142/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA+ L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVASSLLRKM--LEQGRWESLKERYKLLEEDRDDNILENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 ILQAAYTLLRDYRVAKLGKFGLDE 288
>gi|223986425|ref|ZP_03636430.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
12042]
gi|223961621|gb|EEF66128.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
12042]
Length = 281
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RD RIPLS+ +P++D+ + + R++VL+++D W T VI
Sbjct: 24 VDLVIELRDCRIPLSSKNPMLDEIIQTKPRLIVLSKKDKGEAEITQQWIEKLKDDTTLVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ KL++ K + + + +G+ PRA+RA +VG PNVGKS++INRL +
Sbjct: 84 AADLLHDSFVPKLTQACKEVMKEKIERMIRRGIRPRAIRAMVVGVPNVGKSTMINRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ A RPGVTR L+WV+ KD+E LD+PG++ + D LA+ I + ++
Sbjct: 144 KIAQTADRPGVTRSLQWVKLNKDVELLDTPGVLWPKFEDPTVGFHLALTGAIRD---EIL 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL---HLF---NGDTHQAA 234
++V L + L+ RY ++ + ++A+ HL D +
Sbjct: 201 PKEEVVVYALKWLSANEPQRLKERYALENLAADPYALLTQIAVARKHLNKQGEADLTRTI 260
Query: 235 FRILTDFRKGKFGWISLERP 254
++ + R K G IS ERP
Sbjct: 261 DMVINEIRNDKLGPISWERP 280
>gi|291546335|emb|CBL19443.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus sp.
SR1/5]
Length = 285
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 137/260 (52%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR+PLS+ +P +D+ N+ R+++LN+ D+ AW YF ++G +
Sbjct: 24 IDLIIELVDARVPLSSRNPDIDELGKNKARMILLNKADLADERQNRAWMEYFKEKGIYAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKR-RSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + G+MK A A +R R +G+ R VRA + G PNVGKS+ IN
Sbjct: 84 SIDSR-NKGSMKAVSAAITEACKEKTERDRRRGIKNRPVRAMVAGIPNVGKSTFINTFAG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ +PGVT+ +W+R K +E LD+PGI+ + DQ ++LA IG D+
Sbjct: 143 KACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKFEDQEVGMRLAY---IGSIKDDI 199
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK--TFVQKLALHLFNG---DTHQAA 234
++ + + ++ + A++ RY ++ + T V K L G D +A+
Sbjct: 200 LNIEELALGLIGYLQEFYPAAIRERYNVEEELKPLDILTAVAKARGCLKKGEELDYEKAS 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G ++LE P
Sbjct: 260 RLLLEEFRSGKLGKVTLEFP 279
>gi|419841874|ref|ZP_14365236.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|386903911|gb|EIJ68712.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 296
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 140/258 (54%), Gaps = 14/258 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + + N+KRI+VLN+ D++ ++ + W YF +Q
Sbjct: 27 IDVVLEIVDARIPLSSKNPDIPIFAKNKKRIVVLNKSDLVEKSELSRWKEYFLQQEKADA 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G +L ++ + K +KGL +R ++G PNVGKS LINR++
Sbjct: 87 VVEISAETGYNVKQLYAYIDKVSKEKKEKLYAKGLKKVNIRIMVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WV+ LE LD+PGI+ + ++ LA+ I +
Sbjct: 147 GKNSAGVGNKPGFTKGKQWVKLKDGLELLDTPGILWPKFENREVGFHLAMTGAIKDEILP 206
Query: 179 VADVAAILVQMLARIPTVG-ITALQNRYKIDMDG--TCGKTFVQKLALH--LFNG----D 229
+ +VA L+++ ++G + L+ RYK+ + + ++K+AL + N +
Sbjct: 207 LEEVACTF---LSKMVSLGKWSVLRERYKLQEEDYHEISEYILEKIALRMAMLNKGGELN 263
Query: 230 THQAAFRILTDFRKGKFG 247
QAA+ +L D+R GK G
Sbjct: 264 VKQAAYTLLRDYRSGKLG 281
>gi|325680801|ref|ZP_08160339.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
gi|324107581|gb|EGC01859.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
Length = 297
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 22/272 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+E+ DARIP S+ +P + + G++ R+++LN+ D + W Y+ KQG +
Sbjct: 28 VDAVVEITDARIPYSSRNPEIKKICGSKPRMVLLNKADSADPDITSMWIEYYKKQGVPAL 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + G K + K L S+ K ++G+ R +R IVG PNVGKSS INRL
Sbjct: 88 ATDCRSGRNVSKFYPMLKELLSEQIEKWDTRGMTGRPIRMMIVGIPNVGKSSFINRLAGA 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVTR +WV + E LD PG++ + D+ +LA + + D
Sbjct: 148 KLAKVEDRPGVTRGKQWVALDEGFELLDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTE 207
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGT---------CGKTF-----VQKLALHL 225
+A L++ L P + L +RY I +D C K + V + L
Sbjct: 208 YLACRLLEYLNDDYPEL----LTDRYGISLDDLPEPMDEMQGCVKGYELLERVGRKRGFL 263
Query: 226 FNG---DTHQAAFRILTDFRKGKFGWISLERP 254
+G +T +AA +L +FR GK G +SLE+P
Sbjct: 264 ISGGEINTERAANTVLDEFRGGKLGRLSLEKP 295
>gi|419707040|ref|ZP_14234546.1| GTP-binding protein [Streptococcus salivarius PS4]
gi|383283280|gb|EIC81238.1| GTP-binding protein [Streptococcus salivarius PS4]
Length = 284
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W TYF KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKSDLADNNRTKEWRTYFEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L S+ + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMSEKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTQKLGFREDYDRFYSLFVK 261
Query: 240 DFRKGKFGWISLE 252
D R GK G +L+
Sbjct: 262 DVRDGKLGHYTLD 274
>gi|399155736|ref|ZP_10755803.1| GTPase YlqF [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 306
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 140/263 (53%), Gaps = 13/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+RDARIP+S+ + ++ L +KRIL+ N+ ++ W YF K T +
Sbjct: 44 VDVVLEMRDARIPVSSANHDFEKLLQQKKRILLFNKTNLADEDTTRKWKAYFKKMDTPSL 103
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + ++ L++ L + R +G+ P +++ I G PNVGKSSLINRL +R
Sbjct: 104 FVDALNKQNLQEILPLSRKLMQEKWSNFRKRGIRPPSLKLLITGIPNVGKSSLINRLSRR 163
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P PGVT+ W++ GKD+E LD+PGI+ +I ++ A ++L I I + +
Sbjct: 164 KAAETGPTPGVTKHQDWIKLGKDVELLDTPGILWPKIENREAGLRLTITGAIKDSIVGTS 223
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDG--TCGKTFVQKLALH---LFNG---DTH 231
++ L+ +L + P LQN Y++ + ++K+A L G D
Sbjct: 224 LLSDYLLGILMLKAPE---QLLQN-YQLTEENLELLPADLLEKIAEKRGCLKGGGAIDHP 279
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A +L DFR GK G +S + P
Sbjct: 280 RAESLVLRDFRAGKLGRLSFDLP 302
>gi|237742200|ref|ZP_04572681.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256845473|ref|ZP_05550931.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294785221|ref|ZP_06750509.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
gi|229429848|gb|EEO40060.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256719032|gb|EEU32587.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294486935|gb|EFG34297.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
Length = 292
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLLKKM--LEQGRWESLKERYKLLEEDRDDNVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 ILQAAYTLLRDYRVAKLGKFGLDE 288
>gi|331701418|ref|YP_004398377.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
gi|329128761|gb|AEB73314.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
Length = 290
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 132/257 (51%), Gaps = 6/257 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EV DARIPL++ +P + + ++ + ++ + D+ NAW YFA+ I
Sbjct: 26 VDVVFEVIDARIPLTSQNPEIRRISADKPHLYIMTKRDLADPQLTNAWLQYFAEHNQPAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + + + D + + KG+ R +RA VG PNVGKS+++NRL+ R
Sbjct: 86 AIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPIRAISVGVPNVGKSTVLNRLVNR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W++ LE LD+PGI+ + S Q A KLA+ I E Y
Sbjct: 146 RAAQVGNRPGVTKGQQWLKSTDKLELLDTPGILWPKFSSQEVADKLALTGAIKESVYASD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
D+A ++ + ++ G L++RY + D L + G D + + RI
Sbjct: 206 DIALFGLKQIRQLHPEG---LKDRYHLTDDDLDLSDVDLLLQITKKVGMRDDYERGSNRI 262
Query: 238 LTDFRKGKFGWISLERP 254
+ DFR GK G +L+ P
Sbjct: 263 IQDFRAGKIGRFTLDDP 279
>gi|313901086|ref|ZP_07834574.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
gi|312954044|gb|EFR35724.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
Length = 288
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 142/264 (53%), Gaps = 19/264 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ N+ R++VL+++D A W + + T+V+
Sbjct: 29 VDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDKADAAATKLWCSALQNETTRVV 88
Query: 61 ---FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ G ++ SRL A +KRR G+ PRA+RA +VG PNVGKS+ INR+
Sbjct: 89 ALDILKENIIPGIVEESRLLMQ-AKIERMKRR--GIRPRAIRAMVVGVPNVGKSTFINRI 145
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
K+++ RPGVTR L+W + ++LE LD+PG++ + D+ + LAI I +
Sbjct: 146 SKKKVAVTGDRPGVTRALQWSKVNQNLELLDTPGVLWPKFEDETVGVLLAITGAIRDEIL 205
Query: 178 DVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLA-----LHLFNGDT 230
+ ++AA ++ L ALQ RY+I C ++ +++A + D
Sbjct: 206 PLEEIAAWAMRYLI---ANKKEALQQRYEI---AVCEDPYIMLERIAEKRGFMRKGEMDE 259
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+ L + R K G I+ E P
Sbjct: 260 KRTIEAFLRELRDDKLGRITWEMP 283
>gi|421499461|ref|ZP_15946503.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402269611|gb|EJU18937.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 296
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 140/258 (54%), Gaps = 14/258 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIP+S+ +P + + N+KRI+VLN+ D++ ++ + W YF +Q
Sbjct: 27 IDVVLEIVDARIPISSKNPDIPMFAKNKKRIVVLNKSDLVEKSELSRWKEYFLQQEKADA 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G +L ++ + K +KGL +R ++G PNVGKS LINR++
Sbjct: 87 VVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKKVNIRIMVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WV+ LE LD+PGI+ + ++ LA+ I +
Sbjct: 147 GKNSAGVGNKPGFTKGKQWVKLKDGLELLDTPGILWPKFENREVGFHLAMTGAIKDEILP 206
Query: 179 VADVAAILVQMLARIPTVG-ITALQNRYKIDMDG--TCGKTFVQKLALH--LFNG----D 229
+ +VA L+++ ++G + L+ RYK+ + + ++K+AL + N +
Sbjct: 207 LEEVACTF---LSKMVSLGKWSVLRERYKLQEEDYHEISEYILEKIALRMAMLNKGGELN 263
Query: 230 THQAAFRILTDFRKGKFG 247
QAA+ +L D+R GK G
Sbjct: 264 VKQAAYTLLRDYRSGKLG 281
>gi|417989648|ref|ZP_12630150.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
gi|410537741|gb|EKQ12311.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
Length = 286
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 140/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ +P++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDIVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++ + ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARCIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|340755132|ref|ZP_08691834.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
gi|313686144|gb|EFS22979.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
Length = 298
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 140/258 (54%), Gaps = 14/258 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIP+S+ +P + + N+KRI+VLN+ D++ ++ + W YF +Q
Sbjct: 29 IDVVLEIVDARIPISSKNPDIPMFAKNKKRIVVLNKSDLVEKSELSRWKEYFLQQEKADA 88
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G +L ++ + K +KGL +R ++G PNVGKS LINR++
Sbjct: 89 VVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKKVNIRIMVLGIPNVGKSRLINRIV 148
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WV+ LE LD+PGI+ + ++ LA+ I +
Sbjct: 149 GKNSAGVGNKPGFTKGKQWVKLKDGLELLDTPGILWPKFENREVGFHLAMTGAIKDEILP 208
Query: 179 VADVAAILVQMLARIPTVG-ITALQNRYKIDMDG--TCGKTFVQKLALH--LFNG----D 229
+ +VA L+++ ++G + L+ RYK+ + + ++K+AL + N +
Sbjct: 209 LEEVACTF---LSKMVSLGKWSVLRERYKLQEEDYHEISEYILEKIALRMAMLNKGGELN 265
Query: 230 THQAAFRILTDFRKGKFG 247
QAA+ +L D+R GK G
Sbjct: 266 VKQAAYTLLRDYRSGKLG 283
>gi|340752547|ref|ZP_08689346.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
gi|340567306|gb|EEO37392.2| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
Length = 292
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 143/265 (53%), Gaps = 15/265 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++ + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLLEKKELEVWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + + LAI I +
Sbjct: 147 GKNSAGVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGVNLAISGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVG-ITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDT 230
+ D+A L++ ++ T G T+L++RYK+ D D + + K+AL + G+
Sbjct: 207 IEDIACSLIR---KMLTQGRWTSLKDRYKLLEEDRDDEIMENILSKIALRMAMLNKGGEL 263
Query: 231 H--QAAFRILTDFRKGKFGWISLER 253
+ QAA+ +L D+R K G L+
Sbjct: 264 NVLQAAYTLLRDYRAAKLGKFGLDE 288
>gi|365904024|ref|ZP_09441783.1| GTP-binding protein, GTPase [Lactobacillus versmoldensis KCTC 3814]
Length = 284
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 137/255 (53%), Gaps = 1/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P+++Q + +K I++LN+ D+ + W + ++GT I
Sbjct: 24 VDIVLEIVDARLPYSSRNPVLEQIINQKKHIIILNKADLADPKLTSDWILSYQQEGTAAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + KL+ L ++ SD K G+ +RA +G PNVGKS+++N+++ +
Sbjct: 84 EVDAKHDTKLTKLNNLIRSELSDKIAKYERNGVKNFQIRAMCIGIPNVGKSTILNKMVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ W++ ++ LD+PGI+ +ISD +KLA+ I ++ Y
Sbjct: 144 KVAVTGNKPGVTKNQNWLKTDYGIDLLDTPGILWPKISDPKVGMKLALSGAIKDKIYPPD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAAFRILT 239
DVA + L + ++ N + D+ + +L L + D +AA R++
Sbjct: 204 DVAIYALDFLQANYLDRVMSVYNLQRSDVYNHTTAQLLMRLTEKLGYKEDYDRAARRVIM 263
Query: 240 DFRKGKFGWISLERP 254
D R KFG ++ + P
Sbjct: 264 DVRNLKFGRVTFDVP 278
>gi|310779497|ref|YP_003967830.1| ribosome biogenesis GTP-binding protein YlqF [Ilyobacter polytropus
DSM 2926]
gi|309748820|gb|ADO83482.1| ribosome biogenesis GTP-binding protein YlqF [Ilyobacter polytropus
DSM 2926]
Length = 297
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 16/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+D+V+E+ DARIPLS+ +P + ++ N+KRI++LN+ D+++ D W YF K +
Sbjct: 27 IDIVLEIVDARIPLSSKNPDIVKFAKNKKRIIILNKADLVNKEDLKVWKDYFIKNNFAEE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
VI + + G KL + + L+ + K KGL R + G PNVGKS LINR++
Sbjct: 87 VIELSAETGFNVKKLFAIIEKLSKEKKEKMMKKGLRTVNTRLMVAGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
++ +PG TR +WVR + LE LD+PGI+ + + LAI I +
Sbjct: 147 GKKSTGVGNKPGFTRGKQWVRIKEGLELLDTPGILWPKFENDEVGYSLAIAGAIKDEVIP 206
Query: 179 VADVAAILVQMLARIPTVGI-TALQNRYKI---DMDGTCGKTFVQKLALH---LFNGDTH 231
V +VA L++ ++ ++G+ L+ +YK+ D DG + ++K+ L GD
Sbjct: 207 VEEVAYKLIE---KMLSLGMKNTLKEKYKLHEEDFDGVP-QEVLEKIGYRMNMLVKGDKV 262
Query: 232 ---QAAFRILTDFRKGKFGWISLE 252
QAA IL D+R K G L+
Sbjct: 263 NLIQAALTILRDYRNSKLGKFVLD 286
>gi|294782578|ref|ZP_06747904.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
gi|294481219|gb|EFG28994.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
Length = 292
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++ + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLLEKKELEVWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + + LAI I +
Sbjct: 147 GKNSAGVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGVNLAISGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + T+L++RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLIRKMLKQGR--WTSLKDRYKLLEEDRDDEIMENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRAAKLGKFGLDE 288
>gi|237744258|ref|ZP_04574739.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|421527044|ref|ZP_15973649.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
gi|229431487|gb|EEO41699.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|402256773|gb|EJU07250.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
Length = 289
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLLRKM--LEQGRWESLKERYKLLEEDRDDKVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRVAKLGKFGLDE 288
>gi|449950694|ref|ZP_21808347.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
gi|449167009|gb|EMB69917.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
Length = 283
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +F KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDLADSTCTAEWCNFFEKQGIKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + K++ AK L +D VK R +G+ +R IVG PNVGKS+L+NRL +
Sbjct: 85 AVSSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + ++A +KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGK---TFVQKLALHLFNGDTHQAAFRI 237
++ + R + L++ ID++ + + QKL F D +
Sbjct: 205 EITIFGLDFFKRYYPERL--LEHYKGIDLEEEAPEIIMSMTQKLG---FRDDYDRFYQVF 259
Query: 238 LTDFRKGKFGWISLER 253
+ D R G+ G +L+R
Sbjct: 260 IKDVRDGRLGCYTLDR 275
>gi|406026980|ref|YP_006725812.1| GTP-binding protein [Lactobacillus buchneri CD034]
gi|405125469|gb|AFS00230.1| GTP-binding protein [Lactobacillus buchneri CD034]
Length = 290
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 6/257 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV EV DARIPL++ +P + + ++ + ++ + D+ NAW YFA+ I
Sbjct: 26 VDVVFEVIDARIPLTSQNPEIRRISADKPHLYIMTKRDLADPQLTNAWLQYFAEHNQPAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + + + D + + KG+ R +RA VG PNVGKS+++NRL+ R
Sbjct: 86 AIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPIRAISVGVPNVGKSTVLNRLVNR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPG+T+ +W++ LE LD+PGI+ + S Q A KLA+ I E Y
Sbjct: 146 RAAQVGNRPGLTKGQQWLKSNDKLELLDTPGILWPKFSSQEVADKLALTGAIKESVYASD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
D+A ++ + ++ G L++RY + D L + G D + + RI
Sbjct: 206 DIALFGLKQIRQLHPEG---LKDRYHLTDDDLDLSDVDLLLQITKKVGMRDDYERGSNRI 262
Query: 238 LTDFRKGKFGWISLERP 254
+ DFR GK G +L+ P
Sbjct: 263 IQDFRAGKIGRFTLDDP 279
>gi|363888720|ref|ZP_09316098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
gi|361967341|gb|EHL20163.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
Length = 285
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+++V+E+ DAR P+S+ +P +D + + +++VL ++D+ + + +Y+ ++G K +
Sbjct: 28 VNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDLADEENIGKFISYYKEKGIKSV 87
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G +L + + + + K ++KG++ + +R IVG PNVGKS+LIN+++ +
Sbjct: 88 AVNATKKSGISQLINILEQIKEENYQKNKAKGIIKKPLRIMIVGIPNVGKSTLINQIIGK 147
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PG+T+ +W++ D+E LD+PGI+ +I D+ A KLA I ++ ++
Sbjct: 148 KSAKTGNMPGITKSQQWLKIKGDIELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVIEIE 207
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQAA 234
D+ ++ L I L ++I+ D T + + +A L D + A
Sbjct: 208 DIYYEFIKFL--IENKKQKNLFEEFEINFDETDFEKISEIIAKKRGVLLKSDEIDYFRLA 265
Query: 235 FRILTDFRKGKFGWISLER 253
+L +FR GK+G I L+
Sbjct: 266 NIVLNEFRNGKYGKIQLDE 284
>gi|408356881|ref|YP_006845412.1| GTP-binding protein [Amphibacillus xylanus NBRC 15112]
gi|407727652|dbj|BAM47650.1| putative GTP-binding protein [Amphibacillus xylanus NBRC 15112]
Length = 283
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR PL++ +P++ + L + ++ VL ++D+ N W + + +
Sbjct: 25 VDFVIELVDARAPLASQNPMLQEILQQKPKMQVLMKKDLADPELTNIWLEKLREDEIEAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q K+ AK + ++ + + KG+ PRA RA I+G PNVGKS+LINRL +
Sbjct: 85 AVDVQNRQDIQKVIETAKKMTAEKMERLKKKGVRPRAGRAMIIGIPNVGKSTLINRLANK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPG+T +W++ KD E LD+PGI+ + DQ +LA I ++ +
Sbjct: 145 KIAKTGDRPGITTAQQWIKVKKDFELLDTPGILWPKFEDQNVGYQLAAIGTIKDQILSIE 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI-----DMDGTCGKTFVQKLALHLFNG-DTHQA 233
D+A ++ + P + L RY++ D + Q+ AL D +
Sbjct: 205 DIARFTLKFIQEEYPQL----LLERYQLLDPEADYIEIIEQIGRQRGALAQGGSVDLEKT 260
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++ DFR GK G I+LE+P
Sbjct: 261 AELVIRDFRTGKLGPITLEKP 281
>gi|260494157|ref|ZP_05814288.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336401175|ref|ZP_08581947.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336418578|ref|ZP_08598852.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
gi|260198303|gb|EEW95819.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336161532|gb|EGN64533.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336164515|gb|EGN67420.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
Length = 289
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRVKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLLRKM--LQQGRWESLKERYKLLEEDRDDNVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRIAKLGKFGLDE 288
>gi|281491814|ref|YP_003353794.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
gi|281375528|gb|ADA65038.1| Ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
Length = 282
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 135/260 (51%), Gaps = 14/260 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ AD NA W YF +QG
Sbjct: 24 VDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL---ADSNAVAQWIEYFDEQGF 80
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL
Sbjct: 81 ITLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRL 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I +
Sbjct: 141 AGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
Query: 178 DVADVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQA 233
+ +V L L TV + RYK+ D++ ++ A F D +
Sbjct: 201 PMDEVTIFGLNYFLKNYRTVTM----KRYKMTEEDLELEIPDLIMELTARFGFRDDYDRF 256
Query: 234 AFRILTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 257 YNMFVKDVRDGKLGLFCLDE 276
>gi|346314321|ref|ZP_08855842.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906679|gb|EGX76403.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 288
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 139/261 (53%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ N+ R++VL+++D A W + + T+V+
Sbjct: 29 VDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDKADAAATKLWCSALQNETTRVV 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ T ++ ++ L + + +G+ PRA+RA +VG PNVGKS+ INR+ K+
Sbjct: 89 ALDILKENITARIVEESRLLMQAKIERMKRRGIRPRAIRAMVVGVPNVGKSTFINRISKK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVTR L+W + ++LE LD+PG++ + D+ + LAI I + +
Sbjct: 149 KVAVTGDRPGVTRALQWSKVNQNLELLDTPGVLWPKFEDETVGVLLAITGAIRDEILPLE 208
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLA-----LHLFNGDTHQA 233
++AA ++ L ALQ RY I C ++ +++A + D +
Sbjct: 209 EIAAWAMRYLI---ANHKEALQQRYDI---AVCEDPYIMLERIAEKRGFMRKGEMDEKRT 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
L + R K G I+ E P
Sbjct: 263 IEAFLRELRDDKLGRITWEMP 283
>gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
Length = 283
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 132/260 (50%), Gaps = 16/260 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF KQG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPLLIKDWQAYFEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + KL+ AK L SD + R KG+ +R I+G PN GKS+L+NRL +
Sbjct: 85 LINAKEQSTVKKLTDAAKNLMSDKLERLREKGIQKEGLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDNLLPMD 204
Query: 181 DVAAI-LVQMLARIPT------VGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQA 233
+V L P GI + +I MD T QKL F D +
Sbjct: 205 EVTIFGLNYFKENYPQRLMERFKGINLEEEAPEIIMDLT------QKLG---FRDDYDRF 255
Query: 234 AFRILTDFRKGKFGWISLER 253
+ D R GK G +L++
Sbjct: 256 YNLFVKDVRDGKLGRYTLDK 275
>gi|83589822|ref|YP_429831.1| GTP-binding protein YlqF [Moorella thermoacetica ATCC 39073]
gi|83572736|gb|ABC19288.1| Ras superfamily GTP-binding protein YlqF [Moorella thermoacetica
ATCC 39073]
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 8/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+EV DAR+P+S+ +P +++ +G R R++VL R D+ A W GT+ +
Sbjct: 15 VDAVLEVADARLPVSSRYPDLEKLIGFRARVVVLTRADLADPAATACWLEKLRAGGTRAV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G L + KA+A R +GL +R +G PNVGKSS++NRL R
Sbjct: 75 AMNARTGSGDRLLYQYLKAIAKAKREARARRGLGEAPLRVMALGIPNVGKSSVLNRLAGR 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
RPG+TR +W+R +LE LD+PG++ R + A+ L E S V
Sbjct: 135 GAARTGNRPGITRGPQWIRIKDNLELLDTPGVLWPRWREPRTALWLGALGCAPEESVPVV 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLALHLFNG---DTHQAAF 235
+A ++ + L R L RY I G + + L G D + A
Sbjct: 195 GIACLVGEFLLR---EAPGTLAARYGIQEQGDATDILAAIGRARGFLLPGGVVDQEKTAR 251
Query: 236 RILTDFRKGKFGWISLERP 254
++ DFR+G+ G +LERP
Sbjct: 252 ALVNDFREGRLGRFTLERP 270
>gi|417925852|ref|ZP_12569267.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
gi|341590777|gb|EGS34008.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
Length = 285
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+ + D+RI S+ +P+++ L ++ ++++LN+ DM W YFAK+ +
Sbjct: 27 VDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKMDMADPKITQNWINYFAKKNITAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+G+ G K+ K + DV R+ K + +R IVG PNVGKS++IN+L R
Sbjct: 87 PIDGKNGKNLDKIEPTTKKILEDVLSNRKDKNIKSEIIRMMIVGIPNVGKSTIINKLSNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W+R +E LD+PG++ + D + LA I + D
Sbjct: 147 QSAKTGNTPGVTRTNQWIRIKGKMELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEE 206
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A L++ L I P + L+ RY +D + +A+ L G D +
Sbjct: 207 NLAYKLIEKLMSIDPQI----LEKRYSVDTQNKETIEIMDDIAIRRGCLLKGKNIDYSKV 262
Query: 234 AFRILTDFRKGKFGWISLE 252
+ I+ +FRK K G ISLE
Sbjct: 263 SSIIIDEFRKTKLGRISLE 281
>gi|414597377|ref|ZP_11446945.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE E16]
gi|390481873|emb|CCF29006.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE E16]
Length = 279
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIP S+ +P +D+ +G + R+L++ + D+ W F G V+
Sbjct: 26 VDVAFELVDARIPESSRNPEVDKLIGGKPRLLIMTKADLADPEQTRQWKAKFESDGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQA +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ I A RY ++ + LA+ F D +A+ R+
Sbjct: 206 DAALFLISFFRDYRPEAIVA---RYHLEENAFEQDNVQILLAITNKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLER 253
L D RKGK G +L+
Sbjct: 263 LNDLRKGKLGAFTLDE 278
>gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852581|ref|ZP_11909726.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740070|gb|EHI65302.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
Length = 287
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ + W ++ +G K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADQSRTKEWQQFYESKGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AKAL SD K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKALMSDKITKLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KVAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQGVGLKLALTGAIKDQLLPLD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
DV + L R+K I+++ T QKL F D +
Sbjct: 205 DVTIFGINYFKEYYP---KRLLERFKGINLEAEAPDIIVTMTQKLG---FRDDYDRFYTL 258
Query: 237 ILTDFRKGKFGWISLER 253
+ + R GK G +L++
Sbjct: 259 FIKEVRDGKLGTFTLDQ 275
>gi|258511349|ref|YP_003184783.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478075|gb|ACV58394.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 134/272 (49%), Gaps = 23/272 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR+P+S+ P++D+ N+ R++VL R D+ W F ++G I
Sbjct: 24 IDVVVELADARLPVSSRSPVLDELARNKPRLMVLTRVDLADPHCTEQWVERFQREGVIAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + R + R++G+ R I G PNVGKS+ +N+L R
Sbjct: 84 PVNARTGQGLREFRRALDEFVEAKMNRARARGIERAVTRGMICGIPNVGKSTFVNQLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR L+W+R G+ E LD+PG++ ++++ +KLA + E ++
Sbjct: 144 AVAKTGDRPGVTRSLQWIRVGR-TELLDTPGVLAPKLANDEQGLKLAASGAVKEEIFEAY 202
Query: 181 DVAA-ILVQMLARIPTVGITALQNRYKIDMDGTCGKT-------FVQKLALHLFNG---- 228
+V A +L + R P AL RY + ++ T VQ H+
Sbjct: 203 EVCAYVLAYLSGRYP----DALAKRYGLRVETPIEWTNLQDVWPAVQPWFEHIGRARGAL 258
Query: 229 ------DTHQAAFRILTDFRKGKFGWISLERP 254
D + A ++ DF++G+ G +SLE P
Sbjct: 259 VAGGAVDEERVAKMVIRDFQEGRLGPVSLEWP 290
>gi|421876612|ref|ZP_16308167.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
gi|372557486|emb|CCF24287.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
Length = 279
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIP S+ +P +D+ +G + R+L++ + D+ W F G V+
Sbjct: 26 VDVAFELVDARIPESSRNPEVDKLIGGKPRLLIMTKADLADPEQTRQWKAKFESDGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQA +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ I A RY ++ + LA+ F D +A+ R+
Sbjct: 206 DAALFLISFFRDYRPEAIVA---RYHLEENAFEQDNVQILLAITNKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLER 253
L D RKGK G +L+
Sbjct: 263 LNDLRKGKLGAFTLDE 278
>gi|170755310|ref|YP_001781985.1| ribosomal biogenesis GTPase [Clostridium botulinum B1 str. Okra]
gi|429243865|ref|ZP_19207349.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
gi|169120522|gb|ACA44358.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
gi|428759071|gb|EKX81460.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
Length = 292
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTRSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDNMARKRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FR GK G ISLE P
Sbjct: 261 VIILDEFRGGKLGAISLEDP 280
>gi|255524251|ref|ZP_05391210.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296185373|ref|ZP_06853783.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
gi|255512076|gb|EET88357.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296050207|gb|EFG89631.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
Length = 280
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P +D GN+ RI++LN+ D+ W +K +V+
Sbjct: 24 VDAIIEIRDARIVRSSKNPDIDDLCGNKPRIILLNKSDLSEDKVTKEWIKTLSKDNIRVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + L + + ++++KG++ R +VG PNVGKSS IN++ K
Sbjct: 84 TVNCITGEGLKSIKAVVNELLQEKHERKKAKGIVNITDRVMVVGIPNVGKSSFINKVAKS 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR +W++ +E +D+PGI+ ++ + + LA I + D+
Sbjct: 144 SIAKTGDRPGVTRSRQWIKTKIGIELMDTPGILWPKLESEETQLNLAFTGAIKDEVMDIE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNGDT 230
++A LV+ L + P L RYK+ +MD K + + D
Sbjct: 204 ELALKLVERLQDKYP----QKLMERYKLKELSETPLDNMDNIGRK---RGAVIARGEIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A +L +FR GK G ISLE P
Sbjct: 257 NRVAVLLLDEFRGGKIGRISLETP 280
>gi|312869154|ref|ZP_07729328.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus oris
PB013-T2-3]
gi|417885563|ref|ZP_12529717.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus oris
F0423]
gi|311095400|gb|EFQ53670.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus oris
PB013-T2-3]
gi|341595485|gb|EGS38134.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus oris
F0423]
Length = 290
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 133/262 (50%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P + G++ R+L++ + D+ W YF +G +
Sbjct: 25 VDIVFELVDARVPYSSQNPEVALAAGDKPRLLIMTKTDLADPDRLAEWKQYFTAKGQPFL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + ++ +K + D + +KGL R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQHNVSKLVTNKSKEILHDQLAQEAAKGLKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + + LA+ I + Y
Sbjct: 145 NVAQTGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFASPKQGVMLALSGAIKDSLYPKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTHQ 232
DVA LA + L+ RY + D+D G T KL F D +
Sbjct: 205 DVALF---ALAYLREHQPELLKKRYHLTDQDLDPAVGNPDLLLTITSKLG---FRDDYDR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A+ R++ D RKGK G I++E P
Sbjct: 259 ASERLIFDLRKGKLGPITMEVP 280
>gi|409387361|ref|ZP_11239591.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
gi|399205462|emb|CCK20506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
Length = 291
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 139/257 (54%), Gaps = 8/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+PLS+ +P++D+ +G + R++++N++D+ + W YF QG +
Sbjct: 25 VDLVMELVDARLPLSSRNPMLDKIIGTKPRLVIINKKDLGDDLEIQKWVHYFEAQGILAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + KL++ AK + ++ + +G+ +A+R I+G PNVGKS+L+NRL +
Sbjct: 85 KINAKEQQTVKKLTKAAKEVLAEKLKRASERGIQNKAIRTMIIGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ ++LE LD+PGI+ + DQ +KLA+ I + D+
Sbjct: 145 KIAITGNKPGVTKGQQWLKTNEELEILDTPGILWPKFEDQRVGLKLALTGAIKD---DLI 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL----HLFNGDTHQAAFR 236
I + L T LQ R+K+ D + V + L + F D +
Sbjct: 202 PKDEITIFGLDFFKANYPTELQKRFKL-TDEQMSLSAVDLIVLLTQKYGFRDDYDRFYDL 260
Query: 237 ILTDFRKGKFGWISLER 253
+ D R K G +L+R
Sbjct: 261 FIKDVRDSKLGTYTLDR 277
>gi|297617099|ref|YP_003702258.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
lipocalidus DSM 12680]
gi|297144936|gb|ADI01693.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
lipocalidus DSM 12680]
Length = 286
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEV DAR PLSTT+P + + + I VLN+ D+ + + ++F K G +
Sbjct: 24 VDMVIEVVDARAPLSTTNPDLPHLVRGKPIIKVLNKADLADERETRRFISFFQKNGIGAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ G G + R + + + + K R R I G PNVGKSS +N L +
Sbjct: 84 AADSLRGKGLPDVVRAVERVYAPLAKTLLEKRQRVRPARIMIAGLPNVGKSSFLNSLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R+ PGVTR +W+R + +E LD+PG++ ++ + KLA+ +GE++Y+
Sbjct: 144 RVVKTGAVPGVTRGRQWIRIKEGIELLDTPGVMWPKVENDEQGTKLALLAVVGEKAYEDE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDM-DGTCGKTFVQ---KLALHLFNG--DTHQA 233
VA L+ +L R P + L+ RY+++ DG G+ + K L G D ++
Sbjct: 204 AVACYLISVLKHRKPEM----LKERYRLESWDGEPGELLEEIGGKRGFFLRGGTVDLNKT 259
Query: 234 AFRILTDFRKGKFGWISLERPP 255
A +L DFRKG G ++L+R P
Sbjct: 260 ARAVLEDFRKGGLGRLTLDRLP 281
>gi|312866577|ref|ZP_07726792.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
gi|311097876|gb|EFQ56105.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
Length = 283
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 136/255 (53%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVATKEWQDYFEAQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K LE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKYLEILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L P V LQ R+K +D++ + ++ F D + +
Sbjct: 205 EVTIFGLNYFKEHYPAV----LQERFKQMDLEQEAPEIIMEMTQKLGFREDYDRFYQLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+R
Sbjct: 261 KDVRDGKLGRYTLDR 275
>gi|148544007|ref|YP_001271377.1| GTP-binding protein YlqF [Lactobacillus reuteri DSM 20016]
gi|184153401|ref|YP_001841742.1| GTPase [Lactobacillus reuteri JCM 1112]
gi|227364920|ref|ZP_03848965.1| GTP-binding protein [Lactobacillus reuteri MM2-3]
gi|325682455|ref|ZP_08161972.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
MM4-1A]
gi|148531041|gb|ABQ83040.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus reuteri DSM
20016]
gi|183224745|dbj|BAG25262.1| GTPase [Lactobacillus reuteri JCM 1112]
gi|227070067|gb|EEI08445.1| GTP-binding protein [Lactobacillus reuteri MM2-3]
gi|324978294|gb|EGC15244.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
MM4-1A]
Length = 290
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P + G + ++L++ + D+ N W YF + V+
Sbjct: 25 VDILFELVDARVPYSSQNPEVALAAGEKPKLLIMTKTDLADQKRLNEWIKYFEQHNQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++ +K + D + ++KG+ R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQNNVAKVVTAKSKEILKDKLAEEKAKGMKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + I LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTHQ 232
DVA + L + + L+ RY + D+D + T K+ F D +
Sbjct: 205 DVALFALDYLRQHQS---EVLKQRYHLTDADLDESVTNPDLLLTITAKMG---FRDDYDR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A+ R++ D RKGK G I+LE P
Sbjct: 259 ASERLIFDLRKGKLGPITLEVP 280
>gi|170017295|ref|YP_001728214.1| GTPase [Leuconostoc citreum KM20]
gi|169804152|gb|ACA82770.1| Predicted GTPase [Leuconostoc citreum KM20]
Length = 279
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV E+ DARIP S+ +P +D+ +G + R+L++ + D+ W F G V+
Sbjct: 26 VDVAFELVDARIPDSSRNPEVDKLIGGKPRLLIMTKADLADPEQTRQWKAKFESDGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQA +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ I A RY ++ + LA+ F D +A+ R+
Sbjct: 206 DAALFLISFFRDYRPEAIVA---RYHLEENAFEQDNVQILLAITNKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLER 253
L D RKGK G +L+
Sbjct: 263 LNDLRKGKLGAFTLDE 278
>gi|384135042|ref|YP_005517756.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289127|gb|AEJ43237.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 298
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 137/272 (50%), Gaps = 23/272 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR+P+S+ P++D+ ++ R++VL R D+ + W F ++G I
Sbjct: 30 IDVVVELADARLPVSSRSPVLDELARHKPRLVVLTRIDLADPRCTDRWVERFHREGVIAI 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G G + R + D + R++G+ R I G PNVGKS+ +N+L R
Sbjct: 90 PVNARSGQGLREFRRALDEVVEDKMDRARARGIERAVTRGMICGIPNVGKSTFVNQLAGR 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR L+W+R G E LD+PG++ ++++ +KLA I E ++
Sbjct: 150 AVAKTGDRPGVTRALQWIRVGH-TELLDTPGVLAPKLANDEQGLKLAASGAIKEEIFEAY 208
Query: 181 DVAA-ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKL----------------AL 223
+V A +L + R P AL RY + ++ T +Q + AL
Sbjct: 209 EVCAYVLAYLSGRYP----QALAQRYGLRVEAPIEWTNIQDVWPAVQPWFEHIGRTRGAL 264
Query: 224 HLFNG-DTHQAAFRILTDFRKGKFGWISLERP 254
G D + A ++ D ++G+ G +SLE P
Sbjct: 265 VPGGGVDEERVAKMVIHDLQEGRLGPVSLEWP 296
>gi|227529207|ref|ZP_03959256.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
gi|227350882|gb|EEJ41173.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
Length = 290
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 135/262 (51%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DAR+P S+ +P + G++ R+L++ + D+ W TYF + V+
Sbjct: 25 VDIVFELVDARVPYSSQNPEIALAAGDKPRLLIMTKTDLADSKRLGEWLTYFKEHNQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + ++ +K + D + +KGL R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQQNVSKIVTAKSKEILHDKLAEEAAKGLKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + Q LA+ I + Y
Sbjct: 145 NVAVTGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFASQKQGTMLALSGAIKDSLYAKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKT-----FVQKLALHLFNGDTHQ 232
DVA + L R L+ RY++ D+D + +K+ F D +
Sbjct: 205 DVALFALDYLRRQQP---EELKKRYRLTDADLDESVSNPDLLLRITEKMG---FRDDYDR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A+ R++ + RKGK G I++E P
Sbjct: 259 ASERLIFELRKGKLGPITMEVP 280
>gi|381210003|ref|ZP_09917074.1| hypothetical protein LGrbi_08796 [Lentibacillus sp. Grbi]
Length = 284
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
D VIE+ DAR PLS+ +P++ L + +++V+ ++D+ W +Y+ +G I
Sbjct: 25 DFVIELVDARTPLSSQNPMLQNVLQQKLKMIVMMKKDLADNRMTEKWLSYYKGRGIPAIA 84
Query: 62 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 121
+ + + AK L K + KG+ PR RA I+G PNVGKS+LINRL ++
Sbjct: 85 IDVNSKSDIKCVVQTAKDLGQTKMDKLKRKGVNPRPARAMIIGIPNVGKSTLINRLANKK 144
Query: 122 MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVAD 181
+ +PGVT+ +W++ D E LD+PGI+ + D+ +LA I ++ + D
Sbjct: 145 IAQIGDKPGVTKKQQWIKVKGDFELLDTPGILWPKFEDERVGYRLAAVGTIKDQLLPLDD 204
Query: 182 VAAILVQMLARIPTVGITALQNRYKIDMD-GTCGKTFV----QKLALHL-FNGDTHQAAF 235
V A ++Q + + L+ RY I+ D FV Q+ AL N + + A
Sbjct: 205 VVAFVIQYMQKFYP---DRLEERYGINRDMEDMWDIFVSIGKQRGALESGGNVNFDKVAD 261
Query: 236 RILTDFRKGKFGWISLERPP 255
++ D R GK G I+LE PP
Sbjct: 262 LVIHDLRTGKLGNITLESPP 281
>gi|365902731|ref|ZP_09440554.1| GTPase [Lactobacillus malefermentans KCTC 3548]
Length = 287
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 135/259 (52%), Gaps = 13/259 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKV 59
+D+V E+ DARIPLS+ +P + + + ++ ++V+ + D+ W YF + G +
Sbjct: 25 VDIVFELVDARIPLSSRNPELKRLMKDKPHLIVMTKMDLADPEMTKKWIAYFKNEVGVRA 84
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
I + + + ++++ +++ +D KGL R +RA +G PNVGKS+L+NRL+
Sbjct: 85 IAIDSKANITVKNITKITESILADKLAHEEEKGLKERPIRAMTIGIPNVGKSTLLNRLVN 144
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R++ PGVT+ +W+R K LE LD+PGI+ + D KLA+ I ++ +
Sbjct: 145 RKVAQVGDTPGVTKGQQWLRSSKKLELLDTPGILWPKFEDPETGQKLALTGAIKDQRFAS 204
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGK-----TFVQKLALHLFNGDTHQA 233
DVA ++ + LQ RY + D D T T +K+ + D +A
Sbjct: 205 DDVALFAIKYFKQYHPHN---LQERYHLSDDDMTLSDIDLLLTITKKVGMQ---EDYERA 258
Query: 234 AFRILTDFRKGKFGWISLE 252
+ R++ D RK K G +L+
Sbjct: 259 SERLIQDTRKEKIGRYTLD 277
>gi|19704538|ref|NP_604100.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714822|gb|AAL95399.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 289
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESKTVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 LEDVACSLLRKM--LEQGRWESLKERYKLLEEDRDDKVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRVAKLGKFGLDE 288
>gi|187778965|ref|ZP_02995438.1| hypothetical protein CLOSPO_02560 [Clostridium sporogenes ATCC
15579]
gi|187772590|gb|EDU36392.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
sporogenes ATCC 15579]
Length = 299
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 135/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPEIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ RA +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRAMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKMDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQDKYPERLMKRYKLEALEENPLDNLDNIGRKRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G ISLE P
Sbjct: 261 VILLDEFRAGKLGAISLEDP 280
>gi|418010847|ref|ZP_12650618.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei Lc-10]
gi|410553426|gb|EKQ27429.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei Lc-10]
Length = 286
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 140/259 (54%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+EV DAR P S+ + ++D+ + ++ RI+VLN++D+ A AW Y+ QG I
Sbjct: 25 VDLVLEVVDARTPESSRNLMLDELVADKPRIMVLNKQDLADPALTAAWVQYYQDQGFAAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q ++ +LA L ++ +++++G+ ++A +G PNVGKS+++NRL++R
Sbjct: 85 AIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + + Q ++LA I + +
Sbjct: 145 NIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQ-E 203
Query: 181 DVAAI--LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAF 235
D+ + L +A P AL+ Y + D++ V+ F + A
Sbjct: 204 DMVGLYGLTYFMAHYP----AALKKAYHVTDDDLNEAPHDLLVKLTKSQGFAEAYDRMAE 259
Query: 236 RILTDFRKGKFGWISLERP 254
R++ D R+GK G +LE+P
Sbjct: 260 RLIFDARQGKLGRFTLEKP 278
>gi|420144102|ref|ZP_14651590.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
gi|391855554|gb|EIT66103.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
Length = 285
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 6/193 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++D+ +G++ R++ LN+ D+ ADRNA W +F KQG
Sbjct: 26 VDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNKADL---ADRNAVKAWVEFFEKQGI 82
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ ++R IVG PN GKS+L+NRL
Sbjct: 83 IALAINSKEAHTAKRLTVAAKTLMADKLARNAERGIQNSSLRTMIVGIPNAGKSTLMNRL 142
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ +PGVT+ +W+R K+LE LD+PGI+ + D +KLA+ I ++
Sbjct: 143 AGKKVAVTGNKPGVTKGQQWLRTNKELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLL 202
Query: 178 DVADVAAILVQML 190
+ DV +Q
Sbjct: 203 PMDDVTIFGLQYF 215
>gi|347521655|ref|YP_004779226.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|385832960|ref|YP_005870735.1| GTP-binding protein [Lactococcus garvieae Lg2]
gi|343180223|dbj|BAK58562.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|343182113|dbj|BAK60451.1| GTP-binding protein [Lactococcus garvieae Lg2]
Length = 285
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 6/193 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++D+ +G++ R++ LN+ D+ ADRNA W +F KQG
Sbjct: 26 VDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNKADL---ADRNAVKSWVEFFEKQGI 82
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ ++R IVG PN GKS+L+NRL
Sbjct: 83 IALAINSKEAHTAKRLTVAAKTLMADKLARNAERGIQNSSLRTMIVGIPNAGKSTLMNRL 142
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ +PGVT+ +W+R K+LE LD+PGI+ + D +KLA+ I ++
Sbjct: 143 AGKKVAVTGNKPGVTKGQQWLRTNKELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLL 202
Query: 178 DVADVAAILVQML 190
+ DV +Q
Sbjct: 203 PMDDVTIFGLQYF 215
>gi|315918507|ref|ZP_07914747.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059682|ref|ZP_07924167.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
gi|313685358|gb|EFS22193.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
gi|313692382|gb|EFS29217.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 294
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 137/258 (53%), Gaps = 14/258 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK--QGTK 58
+DVV+E+ DARIP+S+ +P + + N+KRI+VLN+ D++ ++ + W YF K +
Sbjct: 25 IDVVLEIVDARIPISSKNPDIPVFAKNKKRIVVLNKSDLMEKSELSKWKEYFLKVEKADA 84
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G +L ++ + K +KGL +R ++G PNVGKS LINR++
Sbjct: 85 VVEISAETGYNVKQLYACIDKVSKEKKDKLYAKGLKKVNIRIIVLGIPNVGKSRLINRIV 144
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WV+ LE LD+PGI+ + ++ LA+ I +
Sbjct: 145 GKNSAGVGNKPGFTKGKQWVKLKDGLELLDTPGILWPKFENREVGFHLAMTGAIKDEILP 204
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALH--LFNG----D 229
+ +VA + + + I LQ RYK+ D + G ++K+AL + N +
Sbjct: 205 LEEVACAFLSKMISLGKWNI--LQQRYKLLEEDYNEITG-YILEKIALRMAMLNKGGELN 261
Query: 230 THQAAFRILTDFRKGKFG 247
QAA+ +L D+R GK G
Sbjct: 262 VKQAAYTLLRDYRSGKLG 279
>gi|440780920|ref|ZP_20959391.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
gi|440221508|gb|ELP60713.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
Length = 288
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RD+RI S+ +P +D+ ++ RI++LN+ D+ W +K K +
Sbjct: 30 VDAVIEIRDSRIVQSSANPEIDKICKDKPRIILLNKCDLSEEKVTKEWINVLSKNNVKAL 89
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G+G + L + + + KG++ +RA +VG PNVGKSS IN++ K
Sbjct: 90 AVNSLNGLGLNSIKGEIDKLLKEKIDRLKQKGVISVIIRAMVVGIPNVGKSSFINKMAKN 149
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ +E +D+PG++ + ++ + LA I + DV
Sbjct: 150 TAAKIGDKPGVTKSKQWIKTKMGIELMDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVE 209
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQAA 234
++A L++ L + L RYK+D + K+A L N D ++ +
Sbjct: 210 ELALSLIERLQKYYP---DRLIKRYKLDSLEETALENMDKIAKKRGAILSKGNIDYNRVS 266
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G +SLERP
Sbjct: 267 IMLLDEFRGGKLGQVSLERP 286
>gi|339480648|ref|ZP_08656307.1| GTP-binding protein YlqF [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 281
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 132/255 (51%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +D+ +G + R+L++ + D+ AW F +QG V+
Sbjct: 26 VDVVFELVDARIPESSRNPEIDKLIGQKPRLLIMTKADLADPEQTRAWKKRFEEQGYTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKKEAQLARGIQDQPIRAMITGVPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KL++ + + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQTIGMKLSLTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ + A+ RY + D + LA+ F D +A+ R+
Sbjct: 206 DAALFLIAFFRQYRP---EAVIERYHLSDDIFEQENVDVLLAITTKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLE 252
L D RK K G +L+
Sbjct: 263 LNDLRKNKLGAFTLD 277
>gi|125624005|ref|YP_001032488.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854353|ref|YP_006356597.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492813|emb|CAL97768.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070775|gb|ADJ60175.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 282
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 8/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ + W YF +QG +
Sbjct: 24 VDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDEQGFVTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL +
Sbjct: 84 AINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I + +
Sbjct: 144 KVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMD 203
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFR 236
+V L L +V + RY++ D++ ++ A F D +
Sbjct: 204 EVTIFGLDHFLKNYRSVTM----KRYRMTEEDLELEIPDLIMELTARFGFRDDYDRFYNM 259
Query: 237 ILTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 260 FVKDVRDGKLGLFCLDE 276
>gi|386714315|ref|YP_006180638.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
gi|384073871|emb|CCG45364.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
Length = 280
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR PLS+ +P++ LG++ +++VL ++D+ W +F + G I
Sbjct: 24 VDFVIELVDARAPLSSQNPMLQGILGDKPKMMVLMKKDLADPKVTKEWLEHFKENGFPSI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ L K++ ++ K ++KG+ PRA RA I+G PNVGKS+LINRL +
Sbjct: 84 AIEANNKQDIQAVINLGKSIGNEKIEKLKAKGVRPRASRAMILGIPNVGKSTLINRLANK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + + LD+PGI+ + ++ +LA I ++
Sbjct: 144 SIAKTGDKPGVTKKQQWIKVKNEFDLLDTPGILWPKFEEEEVGYRLASIGTIKDQILPTE 203
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNG--DTHQAA 234
DVAA ++ L A P++ L+ RY D T +T +K G + + +
Sbjct: 204 DVAAYVLDYLQAYYPSM----LEERYGFEGYDDIMTAFETIGKKRGCLESGGRINFDKVS 259
Query: 235 FRILTDFRKGKFGWISLERP 254
I+ D R GK G IS E P
Sbjct: 260 DVIIQDLRNGKLGLISFESP 279
>gi|373121387|ref|ZP_09535255.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
gi|371665405|gb|EHO30570.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
Length = 288
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ N+ R++VL+++D A W + + T+V+
Sbjct: 29 VDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDKADAAATKLWCSALQNETTRVV 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ ++ L + + +G+ PRA+RA +VG PNVGKS+ INR+ K+
Sbjct: 89 ALDILKENIIARIVEESRLLMQAKIERMKRRGIRPRAIRAMVVGVPNVGKSTFINRISKK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVTR L+W + ++LE LD+PG++ + D+ + LAI I + +
Sbjct: 149 KVAVTGDRPGVTRALQWSKVNQNLELLDTPGVLWSKFEDETVGVLLAITGAIRDEILPLE 208
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLA-----LHLFNGDTHQA 233
++AA ++ L ALQ RY I C ++ +++A + D +
Sbjct: 209 EIAAWAMRYLI---ANHKEALQQRYDI---AVCEDPYIMLERIAEKRGFMRKGEMDEKRT 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
L + R K G I+ E P
Sbjct: 263 IETFLRELRDDKLGRITWEMP 283
>gi|422317044|ref|ZP_16398413.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
gi|404590282|gb|EKA92731.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
Length = 292
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++ + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVEKKELEIWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G K + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNLKKFYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + + LAI I +
Sbjct: 147 GKNSAGVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGVNLAISGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ D+A L++ + + T+L++RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDIACSLIRKMLKQGR--WTSLKDRYKLLEEDRDDEIMENILSKVALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRSAKLGKFGLDE 288
>gi|262068273|ref|ZP_06027885.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum ATCC 33693]
gi|291378011|gb|EFE85529.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum ATCC 33693]
Length = 290
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++ + W YF +Q +
Sbjct: 25 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLLEKKELEVWKKYFKEQDFADE 84
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 85 VVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 144
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WVR + +E LD+PGI+ + + + LAI I +
Sbjct: 145 GKNSAGVGNKPGFTKGKQWVRIKEGIELLDTPGILWPKFESETVGVNLAISGAIRDEILP 204
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + T+L++RYK+ D D + + K+AL + G+ +
Sbjct: 205 IEDVACSLIRKMLKQGR--WTSLKDRYKLLDEDRDDEIMENILSKIALRMAMLNKGGELN 262
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 263 VLQAAYTLLRDYRVAKLGKFGLDE 286
>gi|227543434|ref|ZP_03973483.1| GTP-binding protein [Lactobacillus reuteri CF48-3A]
gi|338204384|ref|YP_004650529.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
SD2112]
gi|227186586|gb|EEI66657.1| GTP-binding protein [Lactobacillus reuteri CF48-3A]
gi|336449624|gb|AEI58239.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
SD2112]
Length = 290
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 14/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P + G + ++L++ + D+ N W YF + V+
Sbjct: 25 VDILFELVDARVPYSSQNPEVALAAGEKPKLLIMTKTDLADQKRLNEWIKYFEQHNQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++ +K + D + ++KG+ R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQNNVAKVVTAKSKEILKDKLAEEKAKGMKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + I LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTHQ 232
DVA + L + L+ RY + D+D + T K+ F D +
Sbjct: 205 DVALFALDYLRQHQP---EMLKQRYHLTDADLDESVANPDLLLTITAKMG---FRDDYDR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
A+ R++ D RKGK G I+LE P
Sbjct: 259 ASERLIFDLRKGKLGPITLEVP 280
>gi|257066781|ref|YP_003153037.1| HSR1-like GTP-binding protein [Anaerococcus prevotii DSM 20548]
gi|256798661|gb|ACV29316.1| GTP-binding protein HSR1-related [Anaerococcus prevotii DSM 20548]
Length = 280
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 139/258 (53%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++E+ D+RIP+S+ +P++D+ + ++ R++++N+ D+ + W F ++G +
Sbjct: 26 VDVILEIIDSRIPISSRNPMIDEIVADKPRMVIMNKSDLSDPEENKKWVKKFREEGIPAL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + K+ + A+ L D K K + +R IVG PN GKS+ IN++ K+
Sbjct: 86 LMNSKENVPVDKIYKEARTLLKDKFEKNEKKNIDNPMIRMMIVGVPNSGKSTFINKVSKK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T+ +W++ G +++ LD+PGI+ + ++ + L+ + I + ++
Sbjct: 146 KGAKVGNRPGITQTKQWIKTGSNIQLLDTPGILWPKF-EEKIGLHLSFTNAIKDEVLNIE 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF---VQKLALHLFNGDTHQA--AF 235
D+ ++ L + AL +RY++D + + +K + GD A A
Sbjct: 205 DLT---LKFLEEMKENNPEALVDRYEVDPALPALEIYEAIAKKRGAIISGGDFDYARTAN 261
Query: 236 RILTDFRKGKFGWISLER 253
IL DFR GK G I+LE+
Sbjct: 262 IILNDFRSGKLGKITLEK 279
>gi|320546753|ref|ZP_08041064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
gi|320448632|gb|EFW89364.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
Length = 284
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADSNRTKEWHKYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQSTVKLVTEAAKSLMADKLAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAF 235
+V + P L RYK ID++ + QKL F D +
Sbjct: 205 EVTIFGLNFFKEHYP----ERLSERYKGIDLEEEAPEIIMAMTQKLG---FRDDYDRFYA 257
Query: 236 RILTDFRKGKFGWISLE 252
+ D R+GK G +L+
Sbjct: 258 LFVKDVREGKLGRYTLD 274
>gi|374673347|dbj|BAL51238.1| GTP-binding protein [Lactococcus lactis subsp. lactis IO-1]
Length = 282
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 14/260 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ AD NA W YF QG
Sbjct: 24 VDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL---ADSNAVAQWIEYFDDQGF 80
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL
Sbjct: 81 ITLAINSKEEYTAKRLTVAAKKLMTDKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRL 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I +
Sbjct: 141 AGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
Query: 178 DVADVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQA 233
+ +V L L TV + RY++ D++ ++ A F D +
Sbjct: 201 PMDEVTIFGLNYFLKNYRTVTM----KRYRMTEEDLELEIPDLIMELTARFGFRDDYDRF 256
Query: 234 AFRILTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 257 YNMFVKDVRDGKLGLFCLDE 276
>gi|296110321|ref|YP_003620702.1| GTPase [Leuconostoc kimchii IMSNU 11154]
gi|339490525|ref|YP_004705030.1| GTPase [Leuconostoc sp. C2]
gi|295831852|gb|ADG39733.1| GTPase [Leuconostoc kimchii IMSNU 11154]
gi|338852197|gb|AEJ30407.1| GTPase [Leuconostoc sp. C2]
Length = 284
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P +++ + ++ +L++ + D+ AW +F +G V+
Sbjct: 26 VDVVFELVDARIPESSRNPEVNKLIASKPCLLIMTKADLADPEQIRAWKAHFEAEGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPKTPQLVTKAARRAVASKKAAQLARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KLA+ + + +D
Sbjct: 146 NVAPTADRPGVTKKVAWLKTPTKLELLDSPGVLWPKFEDQVIGMKLALTGAVKDTIFDKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
D A L+ + I + D + ++ + D +A+ R+L D
Sbjct: 206 DAALFLIDFFQKYRPEAIIERYHLASDIFDHENVQVLLEITSKLGLKDDYEKASERLLND 265
Query: 241 FRKGKFGWISLE 252
RKGK G +L+
Sbjct: 266 LRKGKLGTFTLD 277
>gi|226949795|ref|YP_002804886.1| ribosomal biogenesis GTPase [Clostridium botulinum A2 str. Kyoto]
gi|226844044|gb|ACO86710.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
Length = 292
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDNIGRKRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FR GK G ISLE P
Sbjct: 261 VIILDEFRGGKLGAISLEDP 280
>gi|259500646|ref|ZP_05743548.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315653519|ref|ZP_07906440.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
gi|259168030|gb|EEW52525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315489210|gb|EFU78851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
Length = 281
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ + + N+ I++LN+ D+ AW +F KQG V+
Sbjct: 27 IDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKADLADAIKTKAWVKFFQKQGILVL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K D K +KG ++ I G PN GKS++INRL+ R
Sbjct: 87 PMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + D+ +KLA C I + +
Sbjct: 147 NATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHAD 206
Query: 181 DVAAILV-----QMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALHLFNGDTHQAA 234
DV+ ++ Q L + T+ + KI D+D T L D + +
Sbjct: 207 DVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDIDLLLAMT-----QLFGMRDDYERFS 261
Query: 235 FRILTDFRKGKFGWISLERP 254
L RKGK G I+ + P
Sbjct: 262 IFFLQRLRKGKIGRITFDLP 281
>gi|297587482|ref|ZP_06946126.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
gi|297574171|gb|EFH92891.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
Length = 285
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+ + D+RI S+ +P+++ L ++ ++++LN+ DM W YFAK+ +
Sbjct: 27 VDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKMDMADPKITQNWINYFAKKNITAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ AK + DV R+ K + +R IVG PNVGKS++IN+L R
Sbjct: 87 PIDSKNGRNLDKIEPTAKKILEDVLANRKDKNIKSEIIRMMIVGIPNVGKSTIINKLSNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W+R +E LD+PG++ + D + LA I + D
Sbjct: 147 QSAKTGNTPGVTRSNQWIRIKGKMELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEE 206
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A L++ L I P + L+ RY +D + +A+ L G D +
Sbjct: 207 NLAYKLIEKLMSIDPQI----LEKRYSVDTQNKETIEIMDDIAIRRGCLLKGKNIDYSKV 262
Query: 234 AFRILTDFRKGKFGWISLE 252
+ ++ +FRK K G ISLE
Sbjct: 263 SSIVIDEFRKTKLGRISLE 281
>gi|421767749|ref|ZP_16204490.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
gi|407623705|gb|EKF50521.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
Length = 285
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 114/191 (59%), Gaps = 6/191 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++D+ +G++ R++ LN+ D+ ADRNA W +F QG
Sbjct: 26 VDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNKADL---ADRNAVKSWVEFFESQGI 82
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + + +L+ AK L +D + +G+ ++R IVG PN GKS+L+NRL
Sbjct: 83 IALAINSKEAHTSKRLTVAAKTLMADKLARNAERGIQNSSLRTMIVGIPNAGKSTLMNRL 142
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ +PGVT+ +W+R K+LE LD+PGI+ + D +KLA+ I ++
Sbjct: 143 AGKKVAVTGNKPGVTKGQQWLRTNKELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLL 202
Query: 178 DVADVAAILVQ 188
+ DV +Q
Sbjct: 203 PMDDVTIFGLQ 213
>gi|302380886|ref|ZP_07269348.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
gi|302311264|gb|EFK93283.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
Length = 285
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 9/258 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+ + D+RI S+ +P+++ L ++ ++++LN+ DM W YFAK+ +
Sbjct: 27 VDIVLVLVDSRIVRSSMNPVIEDILKDKPQLILLNKMDMADPKITQNWINYFAKKNITAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ K + DV R+ K + +R IVG PNVGKS++IN+L R
Sbjct: 87 PIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKSEIIRMMIVGIPNVGKSTIINKLSNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W+R +E LD+PG++ + D + LA I + D
Sbjct: 147 QSAKTGNTPGVTRTNQWIRIKGKMELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEE 206
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQAA 234
++A L++ L I + L+ RY +D + +A+ L G D + +
Sbjct: 207 NLAYKLIEKLMSIDS---QILEKRYSVDTQNKETIEIMDDIAIRRGCLLKGKNIDYSKVS 263
Query: 235 FRILTDFRKGKFGWISLE 252
I+ +FRK K G ISLE
Sbjct: 264 SIIIDEFRKTKLGRISLE 281
>gi|194467935|ref|ZP_03073921.1| GTP-binding protein HSR1-related [Lactobacillus reuteri 100-23]
gi|194452788|gb|EDX41686.1| GTP-binding protein HSR1-related [Lactobacillus reuteri 100-23]
Length = 290
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P + G + ++L++ + D+ N W YF + V+
Sbjct: 25 VDILFELVDARVPYSSQNPEVALAAGEKPKLLIMTKTDLADQKRLNEWIKYFEQHNQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++ +K + D + ++KG+ R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQNNVAKVVTAKSKEILKDKLAEEKAKGMKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R LE LD+PG++ + + I LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSAKLELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTH 231
DVA + L P V L+ RY + D+D + T K+ F D
Sbjct: 205 DVALFALDYLRQHQPEV----LKQRYHLTDADLDESVTNPDLLLTITAKMG---FRDDYD 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ R++ D RKGK G I+LE P
Sbjct: 258 RASERLIFDLRKGKLGPITLEIP 280
>gi|302191335|ref|ZP_07267589.1| hypothetical protein LineA_04927 [Lactobacillus iners AB-1]
gi|309804171|ref|ZP_07698249.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|309809273|ref|ZP_07703142.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|312871435|ref|ZP_07731530.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|312872375|ref|ZP_07732445.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|325911972|ref|ZP_08174374.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|329921303|ref|ZP_08277741.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
gi|308163754|gb|EFO66023.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|308170386|gb|EFO72410.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|311092198|gb|EFQ50572.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|311093088|gb|EFQ51437.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|325476157|gb|EGC79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|328934595|gb|EGG31099.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
Length = 279
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ + + N+ I++LN+ D+ AW +F KQG V+
Sbjct: 25 IDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKADLADAIKTKAWVKFFQKQGILVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K D K +KG ++ I G PN GKS++INRL+ R
Sbjct: 85 PMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + D+ +KLA C I + +
Sbjct: 145 NATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHAD 204
Query: 181 DVAAILV-----QMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALHLFNGDTHQAA 234
DV+ ++ Q L + T+ + KI D+D T L D + +
Sbjct: 205 DVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDIDLLLAMT-----QLFGMRDDYERFS 259
Query: 235 FRILTDFRKGKFGWISLERP 254
L RKGK G I+ + P
Sbjct: 260 IFFLQRLRKGKIGRITFDLP 279
>gi|340758663|ref|ZP_08695248.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium varium
ATCC 27725]
gi|251833783|gb|EES62346.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium varium
ATCC 27725]
Length = 287
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 17/261 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT--K 58
+D+V+EV DARIPLS+ +P + + N+KR++VLN+ D++ ++ W YF + +
Sbjct: 27 IDIVLEVVDARIPLSSKNPDITVFAKNKKRVIVLNKSDLVEKSEILYWKKYFKENNMADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G L + ++++ K ++KGL R +VG PNVGKS LINR++
Sbjct: 87 VLEISAETGFNIRALYSIIDKVSAEKKEKMKAKGLRKVNTRLMVVGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + LE LD+PGI+ + LAI I +
Sbjct: 147 GKSSAGVGNKPGFTRGKQWVRIKEGLELLDTPGILWPKFESDEVGQNLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLAL--HLFNG----D 229
+ D++ IL+ + + I L+ RYK+ D G+ ++K+AL +FN +
Sbjct: 207 IEDISCILISKMIKYGLWDI--LKERYKLLDEDKSEVIGE-ILEKIALRNKMFNKGENLN 263
Query: 230 THQAAFRILTDFRK---GKFG 247
QAA+ +L D+R GKFG
Sbjct: 264 IQQAAYTVLRDYRNCRLGKFG 284
>gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|349611413|ref|ZP_08890649.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|348608735|gb|EGY58705.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
Length = 279
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 11/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ + + N+ I++LN+ D+ AW +F KQG V+
Sbjct: 25 IDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKADLADAIKTKAWVKFFQKQGILVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K D K +KG ++ I G PN GKS++INRL+ R
Sbjct: 85 PMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + D+ +KLA C I + +
Sbjct: 145 NATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHAD 204
Query: 181 DVAAILV-----QMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALHLFNGDTHQAA 234
DV+ ++ Q L + T+ + KI D+D T L D + +
Sbjct: 205 DVSIFVLKYLREQYLDLLVDFCKTSAEKIEKINDIDLLLAMT-----QLFGMRDDYERFS 259
Query: 235 FRILTDFRKGKFGWISLERP 254
L RKGK G I+ + P
Sbjct: 260 IFFLQRLRKGKIGRITFDLP 279
>gi|373454398|ref|ZP_09546264.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
gi|371935673|gb|EHO63416.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
Length = 285
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP S+ +P++++ + + RI++LN+ D+ + W +++ K+ V+
Sbjct: 24 VDVVAELLDARIPASSANPMVEELVKGKPRIVILNKADLADPRQTDRWVSFYRKRNIPVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G KL L + A + K KGL R+VR I+G PNVGKSSLIN L
Sbjct: 84 PMSVGNGKNKKKLLSLIRETAKPILDKWYRKGLKNRSVRLMILGIPNVGKSSLINFLAGT 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
A PG TR +WVR + L+ LD+PG++ + DQ AA++LA I ++
Sbjct: 144 AAARTANTPGHTRGKQWVRLSEGLDLLDTPGVLWPKFDDQTAALRLAATGAIAGDVFNPD 203
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
+V +L+ LA P V L+ Y ID + ++ L G D +A
Sbjct: 204 EVVPVLLSSLAETEPQV----LKEVYHIDDVNQDPQLLLEAAGRRRGCLLPGGAIDYDRA 259
Query: 234 AFRILTDFRKGKFGWISLERPPR 256
+L DFR GK G I+L+ P
Sbjct: 260 ETAVLHDFRSGKLGKITLDPVPE 282
>gi|296328417|ref|ZP_06870943.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296154491|gb|EFG95283.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 289
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DV +E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVALEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEYVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + + LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGMNLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLLRKM--LEQGRWESLKERYKLLEEDRDDKVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 265 VLQAAYTLLRDYRVAKLGKFGLDE 288
>gi|110799613|ref|YP_696394.1| ribosomal biogenesis GTPase [Clostridium perfringens ATCC 13124]
gi|168210660|ref|ZP_02636285.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|110674260|gb|ABG83247.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
gi|170711301|gb|EDT23483.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
Length = 281
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D + R+++LN+ D+ AW T V+
Sbjct: 24 VDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDETIVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L D + + ++KGL RA +VG PNVGKS+ IN++ K
Sbjct: 84 EVNALKGEGLNAIKPALLKLLKDKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PG++ + D+ + LA I + D
Sbjct: 144 NIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNG-DT 230
++A LV+ R+ L RYK+ ++D K + A+ N D
Sbjct: 204 ELALKLVE---RLQETNPEELMTRYKLTELHENPLDNLDAIARK----RGAIMSGNQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A IL +FR GK G ISLE+P
Sbjct: 257 NRIAGIILDEFRGGKIGKISLEKP 280
>gi|358466365|ref|ZP_09176195.1| hypothetical protein HMPREF9093_00665 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069115|gb|EHI79063.1| hypothetical protein HMPREF9093_00665 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 290
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 139/264 (52%), Gaps = 13/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++ + W YF +Q +
Sbjct: 25 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLLEKKELEVWKKYFKEQDFADE 84
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 85 VVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 144
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 145 GKNSAGVGNKPGFTRGKQWVRIKEGIELLDTPGILWPKFESETVGINLAISGAIRDEILP 204
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DV+ L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 205 IEDVSCALIKKM--LEQGRWESLKERYKLLDEDRDDEIMENILSKIALRMAMLNKGGELN 262
Query: 232 --QAAFRILTDFRKGKFGWISLER 253
QAA+ +L D+R K G L+
Sbjct: 263 VLQAAYTLLRDYRIAKLGKFGLDE 286
>gi|395243567|ref|ZP_10420552.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
gi|394484187|emb|CCI81560.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
Length = 279
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 3/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ Q + I++LN+ D+ W YF K+G+ V+
Sbjct: 25 IDVLIEVLDARLPVSSRNPMIGQLTKKKPHIVILNKSDLADPIQTKLWTKYFQKEGSFVM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K A + K KG +R + G PN GKS++INRL+ R
Sbjct: 85 SMDAQHNTNMTALFKLIKLAAKEKTEKLEQKGASNPVIRVALAGIPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ W++ +++ LD+PGI+ + SDQ KLA C I E +
Sbjct: 145 NAAIVGDKPGVTKGQSWLKTKTNVQILDTPGILWPKFSDQTVGYKLAACGAIKEDIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
DVA + L T + R ID D + ++ + D + + +L
Sbjct: 205 DVALFAINFLKENYTKDLEKFA-RLNIDQINDLSDPDLLLEMTQNYGMRDDYERFSKFML 263
Query: 239 TDFRKGKFGWISLE 252
RKG+ G I+ +
Sbjct: 264 LRLRKGRIGRITFD 277
>gi|418037506|ref|ZP_12675885.1| hypothetical protein LLCRE1631_00692 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354694449|gb|EHE94108.1| hypothetical protein LLCRE1631_00692 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 273
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 14/260 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ AD NA W +F +QG
Sbjct: 15 VDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL---ADSNAVAQWIEFFDEQGF 71
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL
Sbjct: 72 VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRL 131
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I +
Sbjct: 132 AGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLL 191
Query: 178 DVADVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQA 233
+ +V L L TV + RY++ D++ ++ A F D +
Sbjct: 192 PMDEVTIFGLNYFLKNYRTVTM----KRYRMTEEDLELEIPDLIMELTARFGFRDDYDRF 247
Query: 234 AFRILTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 248 YNMFVKDVRDGKLGLFCLDE 267
>gi|223933032|ref|ZP_03625026.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|302023801|ref|ZP_07249012.1| ribosomal biogenesis GTPase [Streptococcus suis 05HAS68]
gi|330832828|ref|YP_004401653.1| GTP1/OBG protein [Streptococcus suis ST3]
gi|223898349|gb|EEF64716.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|329307051|gb|AEB81467.1| GTP1/OBG protein [Streptococcus suis ST3]
Length = 283
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAAKSLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P LQ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDVRDGRLGTYTLDR 275
>gi|15673276|ref|NP_267450.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
Il1403]
gi|385830824|ref|YP_005868637.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
gi|12724271|gb|AAK05392.1|AE006361_8 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
gi|326406832|gb|ADZ63903.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
Length = 282
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 14/260 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ AD NA W +F +QG
Sbjct: 24 VDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL---ADSNAVAQWIEFFDEQGF 80
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL
Sbjct: 81 VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRL 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I +
Sbjct: 141 AGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
Query: 178 DVADVAAI-LVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQA 233
+ +V L L TV + RY++ D++ ++ A F D +
Sbjct: 201 PMDEVTIFGLNYFLKNYRTVTM----KRYRMTEEDLELEIPDLIMELTARFGFRDDYDRF 256
Query: 234 AFRILTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 257 YNMFVKDVRDGKLGLFCLDE 276
>gi|386584145|ref|YP_006080548.1| GTP1/OBG protein [Streptococcus suis D9]
gi|353736291|gb|AER17300.1| GTP1/OBG protein [Streptococcus suis D9]
Length = 283
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAAKSLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P LQ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDVRDGRLGTYTLDR 275
>gi|386086556|ref|YP_006002430.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387909787|ref|YP_006340093.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
gi|312278269|gb|ADQ62926.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387574722|gb|AFJ83428.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
Length = 284
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ +IL+LN+ D+ W TYF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKADLADDNRTKEWRTYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L ++ + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLITDAAKSLMTEKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
D R GK G +L+
Sbjct: 262 DVRDGKLGRYTLD 274
>gi|153940438|ref|YP_001391740.1| ribosomal biogenesis GTPase [Clostridium botulinum F str.
Langeland]
gi|384462748|ref|YP_005675343.1| GTP-binding protein [Clostridium botulinum F str. 230613]
gi|152936334|gb|ABS41832.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
gi|295319765|gb|ADG00143.1| GTP-binding protein [Clostridium botulinum F str. 230613]
Length = 292
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDNIGRKRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FR GK G ISLE P
Sbjct: 261 VIILDEFRGGKLGAISLEDP 280
>gi|172057904|ref|YP_001814364.1| GTP-binding protein HSR1-related [Exiguobacterium sibiricum 255-15]
gi|171990425|gb|ACB61347.1| GTP-binding protein HSR1-related [Exiguobacterium sibiricum 255-15]
Length = 288
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P+S+ +P+++Q + R++VLN+ DM W K G VI
Sbjct: 24 IDVVIELVDARLPMSSRNPMVEQITAGKPRLIVLNKSDMADARLTEKWMHALRKDGVDVI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ A L D + + R KG P A+RA I+G PNVGKS+LINRL R
Sbjct: 84 AVDAKHSKGLGQIHEGALRLMKDKHDRMRDKGRNPSAIRALIIGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGK-DLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ ++E LD+PGI+ + DQ +LA I + ++
Sbjct: 144 NIAITGDRPGVTKRQQWIKMKTGEMELLDTPGILWPKFDDQLVGYRLAATGAIKDDILNI 203
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKI-DMDGTCGKTF--VQKLALHLFNG--DTHQA 233
D+A ++ L +R P L+ RY++ D+ G + + K + G D +
Sbjct: 204 DDIALFAIRELKSRYP----EQLKARYRLQDVSGEAVEVLEAIGKNRGFVTGGYVDFERT 259
Query: 234 AFRILTDFRKGKFGWISLE 252
+ +L + R K G ++LE
Sbjct: 260 SEMLLHELRTEKIGRVTLE 278
>gi|423136942|ref|ZP_17124585.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371961009|gb|EHO78652.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 289
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 13/257 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+DVV+E+ DARIPLS+ +P + N+KRI+VLN+ D++S + + W YF +Q +
Sbjct: 27 IDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDLVSKQELDKWKKYFKEQDFADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G KL + ++ + K KGL + R ++G PNVGKS LINR++
Sbjct: 87 VVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG TR +WVR + +E LD+PGI+ + + I LAI I +
Sbjct: 147 GKNSAAVGNKPGFTRGKQWVRVKEGIELLDTPGILWPKFESETVGINLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLF----NGDTH 231
+ DVA L++ + + +L+ RYK+ D D + + K+AL + G+ +
Sbjct: 207 IEDVACSLLRKM--LQQGRWESLKERYKLLEEDRDDNVLENILSKIALRMAMLNKGGELN 264
Query: 232 --QAAFRILTDFRKGKF 246
QAA+ +L D+R K
Sbjct: 265 VLQAAYTLLRDYRIAKL 281
>gi|169824228|ref|YP_001691839.1| putative GTPase [Finegoldia magna ATCC 29328]
gi|167831033|dbj|BAG07949.1| putative GTPase [Finegoldia magna ATCC 29328]
Length = 285
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+ + D+RI S+ +P+++ L ++ ++++LN+ DM W YFAK+ +
Sbjct: 27 VDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKMDMADPKITQNWINYFAKKNITAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ K + DV R+ K + +R IVG PNVGKS++IN+L R
Sbjct: 87 PIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKSEIIRMMIVGIPNVGKSTIINKLSNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W+R +E LD+PG++ + D + LA I + D
Sbjct: 147 QSAKTGNTPGVTRTNQWIRIKGKMELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEE 206
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A L++ L I P + L+ RY +D + +A+ L G D +
Sbjct: 207 NLAYKLIEKLMSIDPQI----LEKRYSVDTQNKETIEIMDDIAIRRGCLLKGKNIDYSKV 262
Query: 234 AFRILTDFRKGKFGWISLE 252
+ I+ +FRK K G ISLE
Sbjct: 263 SSIIIDEFRKTKLGRISLE 281
>gi|333397988|ref|ZP_08479801.1| GTP-binding protein RbgA [Leuconostoc gelidum KCTC 3527]
gi|406599893|ref|YP_006745239.1| GTP-binding protein RbgA [Leuconostoc gelidum JB7]
gi|406371428|gb|AFS40353.1| GTP-binding protein RbgA [Leuconostoc gelidum JB7]
Length = 284
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIP S+ +P +D+ +G++ R+L++ + D+ AW F +G V+
Sbjct: 26 VDVIFELVDARIPESSRNPEVDKLIGSKPRLLIMTKADLADPEQIRAWKARFESEGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVASKKAAQIARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ L+ LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKIAWLKTPTKLDLLDSPGVLWPKFEDQVIGMKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-----FNGDTHQAAF 235
D A L+ I RY + D K VQ L L + F + +A+
Sbjct: 206 DAALFLIGFFRNYRPESIV---ERYHLTED-IFDKENVQIL-LEITNKLGFKDNYEKASE 260
Query: 236 RILTDFRKGKFGWISLE 252
R+L D RKGK G +L+
Sbjct: 261 RLLNDLRKGKLGTFTLD 277
>gi|315222957|ref|ZP_07864836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
gi|315187907|gb|EFU21643.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++L+LN+ D+ W YF KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKADLADPTLTKEWRNYFEKQGVKAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ A++L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 PINSKEQSTVKKVTEAAQSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLALTGAIKDDLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V GI + Y ++ + +++ A + T + FR
Sbjct: 205 EVTIF-----------GINYFKEHYPKELQERFKQMNLEEEAPEIIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G +L+
Sbjct: 254 RFYRLFIKDIRDGKLGRYTLD 274
>gi|55820933|ref|YP_139375.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMG 18311]
gi|55822855|ref|YP_141296.1| ribosomal biogenesis GTPase [Streptococcus thermophilus CNRZ1066]
gi|386344588|ref|YP_006040752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|445376173|ref|ZP_21426604.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
gi|445390980|ref|ZP_21428327.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|55736918|gb|AAV60560.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
gi|55738840|gb|AAV62481.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
gi|339278049|emb|CCC19797.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|444750019|gb|ELW74873.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|444750129|gb|ELW74968.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
Length = 284
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ +IL+LN+ D+ W TYF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKADLADDNRTKEWRTYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L ++ + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTEKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
D R GK G +L+
Sbjct: 262 DVRDGKLGRYTLD 274
>gi|379705261|ref|YP_005203720.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374681960|gb|AEZ62249.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 284
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIIGDKPKLMILNKADLADSNRTKEWRRYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQATVKLVTEAAKSLMADKLAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAF 235
+V + P L RYK ID++ + + QKL F D +
Sbjct: 205 EVTIFGLNFFKEHYP----ERLIERYKGIDLEEEAPEIIIAMTQKLG---FRDDYDRFYA 257
Query: 236 RILTDFRKGKFGWISLE 252
+ D R+GK G +L+
Sbjct: 258 LFVKDVREGKLGRYTLD 274
>gi|303234815|ref|ZP_07321440.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
gi|302493933|gb|EFL53714.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
Length = 285
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+ + D+RI S+ +P+++ L ++ ++++LN+ DM W YFAK+ +
Sbjct: 27 VDIVLVLVDSRIVRSSMNPVIEDILKDKPQLILLNKMDMADPKITQNWINYFAKKNITAL 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ K + DV R+ K + +R IVG PNVGKS++IN+L R
Sbjct: 87 PIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKSEIIRMMIVGIPNVGKSTIINKLSNR 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ PGVTR +W+R +E LD+PG++ + D + LA I + D
Sbjct: 147 QSAKTGNTPGVTRTNQWIRIKGKMELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEE 206
Query: 181 DVAAILVQMLARI-PTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
++A L++ L I P + L+ RY +D + +A+ L G D +
Sbjct: 207 NLAYKLIEKLMSIDPQI----LEKRYSVDTQNKETIEIMDDIAIRRGCLLKGKNIDYSKV 262
Query: 234 AFRILTDFRKGKFGWISLE 252
+ I+ +FRK K G ISLE
Sbjct: 263 SSIIIDEFRKTKLGRISLE 281
>gi|357235296|ref|ZP_09122639.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
gi|356883278|gb|EHI73478.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 12/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++LVLN+ D+ W +YF QG K +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLNKIVGDKPKLLVLNKADLADPLLIKEWQSYFENQGLKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L+ AK+L +D + + KG+ +R I+G PN GKS+L+NRL +
Sbjct: 85 LINAKDQSTVKRLTEAAKSLMADKLERLKKKGINKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQLVGLKLALTGAIKDNLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAF 235
+V L P L++R+K +D++ + QKL F D +
Sbjct: 205 EVTIFGLNYFKENYP----ERLKDRFKGLDLEQEVPEMIMDLTQKLG---FRDDYDRFYN 257
Query: 236 RILTDFRKGKFGWISLER 253
+ + R GK G +L++
Sbjct: 258 LFVKEVRDGKLGRYTLDK 275
>gi|333371168|ref|ZP_08463130.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
gi|332976612|gb|EGK13453.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
Length = 296
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 26/269 (9%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D+V E+ DAR+PLS+ +P++ + + R+++L + D+ ADR A WA +F
Sbjct: 24 VDLVFELLDARLPLSSRNPMIGDLIREKPRLILLTKSDL---ADREATRLWAGFFRSDKV 80
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ + G G ++ +++ L + + KG+ +RA +VG PNVGKS+LINRL
Sbjct: 81 RAQPVDILSGAGIQQIGPISRELVKEKLASQTRKGIRRHRIRAMVVGVPNVGKSALINRL 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
R RPGVTR +W++ G +E LD+PGI+ + D ++LA I E
Sbjct: 141 AGRSTAKTGDRPGVTRNQQWIKLGNGMELLDTPGILWPKFDDPKVGLRLAASGAIKEEVL 200
Query: 178 DVADVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG-------- 228
V ++ L+ +A R P + +++RY+++ G+ +L L
Sbjct: 201 SVEEIGLYLLNYIAERYPDL----IRDRYRLN----PGENPEARLLLEEVGRRRGCMRKG 252
Query: 229 ---DTHQAAFRILTDFRKGKFGWISLERP 254
D +AA +L D+R G+ G ISLE P
Sbjct: 253 GEIDLEKAAEVVLRDYRSGRLGRISLEFP 281
>gi|417938285|ref|ZP_12581583.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
gi|343391375|gb|EGV03950.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 135/253 (53%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPALTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L ++ +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMAEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPEKLQERFKQMNLDDEAPDIIMDMTCILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|169342657|ref|ZP_02863699.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
gi|169299163|gb|EDS81233.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
Length = 281
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D + R+++LN+ D+ AW T V+
Sbjct: 24 VDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKNSLTNDETIVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL RA +VG PNVGKS+ IN++ K
Sbjct: 84 EVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PG++ + D+ + LA I + D
Sbjct: 144 NIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNG-DT 230
++A LV+ R+ L RYK+ ++D K + A+ N D
Sbjct: 204 ELALKLVE---RLQETNPEELMTRYKLTELHENPLDNLDAIARK----RGAIMAGNQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A IL +FR GK G ISLE+P
Sbjct: 257 NRIAGIILDEFRGGKIGKISLEKP 280
>gi|116627721|ref|YP_820340.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMD-9]
gi|116100998|gb|ABJ66144.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 284
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ +IL+LN+ D+ W TYF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKADLADDNRTKEWRTYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L ++ + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTEKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
D R GK G +L+
Sbjct: 262 DVRDGKLGRYTLD 274
>gi|422327403|ref|ZP_16408430.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
gi|371663243|gb|EHO28433.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
Length = 288
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 137/261 (52%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ N+ R++VL+++D A W + + T+V+
Sbjct: 29 VDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDKADAAATKLWCSALQNETTRVV 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ ++ L + + +G+ PR +RA +VG PNVGKS+ INR+ K+
Sbjct: 89 ALDILKENIIARIVEESRLLMQAKIERMKRRGIRPRTIRAMVVGVPNVGKSTFINRISKK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVTR L+W + ++LE LD+PG++ + D+ + LAI I + +
Sbjct: 149 KVAVTGDRPGVTRALQWSKVNQNLELLDTPGVLWSKFEDETVGVLLAITGAIRDEILPLE 208
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV--QKLA-----LHLFNGDTHQA 233
++AA ++ L ALQ RY I C ++ +++A + D +
Sbjct: 209 EIAAWAMRYLI---ANHKEALQQRYDI---AVCEDPYIMLERIAEKRGFMRKGEMDEKRT 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
L + R K G I+ E P
Sbjct: 263 IETFLRELRDDKLGRITWEMP 283
>gi|417935868|ref|ZP_12579185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
gi|343402777|gb|EGV15282.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 136/253 (53%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ A W +F QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPALTKEWRQHFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPEKLQERFKQMNLDDEAPEIIMDMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|153930882|ref|YP_001384617.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
19397]
gi|153936572|ref|YP_001388134.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. Hall]
gi|168180677|ref|ZP_02615341.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|387818663|ref|YP_005679010.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|421833916|ref|ZP_16269084.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
gi|152926926|gb|ABS32426.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|152932486|gb|ABS37985.1| GTP-binding protein [Clostridium botulinum A str. Hall]
gi|182668420|gb|EDT80399.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|322806707|emb|CBZ04276.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|409744796|gb|EKN43240.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
Length = 292
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWIDSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDNIGRKRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL +FR GK G ISLE P
Sbjct: 261 VIILDEFRGGKLGAISLEDP 280
>gi|423332731|ref|ZP_17310513.1| GTPase [Lactobacillus reuteri ATCC 53608]
gi|337727849|emb|CCC02937.1| GTPase [Lactobacillus reuteri ATCC 53608]
Length = 290
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++ E+ DAR+P S+ +P + G + ++L++ + D+ N W YF + V+
Sbjct: 25 VDILFELVDARVPYSSQNPEVALAAGEKPKLLIMTKTDLADQKRLNEWIKYFEQHNQPVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + ++ +K + + ++KG+ R +RA VG PNVGKS+L+N L+K+
Sbjct: 85 ALDSRQNNVAKVVTARSKEILKGKLAEEKAKGMKKRPIRAMCVGVPNVGKSTLLNHLVKK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT +W+R +LE LD+PG++ + + I LA+ I + Y
Sbjct: 145 NVAATGNRPGVTTGQQWLRSSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI---DMDGTCGK-----TFVQKLALHLFNGDTH 231
DVA + + L P V L+ RY + D+D + T K+ F D
Sbjct: 205 DVALLALDYLRQHQPEV----LKQRYHLTDADLDESVTNPDLLLTITAKMG---FRDDYD 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+A+ R++ D RKGK G I+LE P
Sbjct: 258 RASERLIFDLRKGKLGPITLEVP 280
>gi|342732353|ref|YP_004771192.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|418016245|ref|ZP_12655810.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|342329808|dbj|BAK56450.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506580|gb|EGX28874.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
Length = 289
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDAR +STT+P ++ ++ +I+VL++ D+ N W Y+ QG I
Sbjct: 27 VDLVIEIRDARSVISTTNPDIEMLTKDKPKIIVLSKVDLADNNTTNKWIEYYKNQGIPCI 86
Query: 61 ----FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 116
N + +++ L K+ + RSKG+ +R I+G PNVGKSSLIN+
Sbjct: 87 DVDIIRNKNIKNIKAQINFLMKSKLD----RYRSKGVKNYTLRGMILGIPNVGKSSLINK 142
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERS 176
+ ++ RPGVT+ +W++ D++ LD+PGI+ + + L + +
Sbjct: 143 ISNNKIAKVGNRPGVTKSNQWIKTKWDIDLLDTPGILWPKFDSTEVGLNLVYIGSVKDEI 202
Query: 177 YDVADVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNG---DTH 231
DV DV +++ L + + L+++YK+++ D + + K L G D +
Sbjct: 203 LDVQDVCYNMLEYLLKNYRMN---LESKYKVEVSDDVSDSMDILGKKLGCLSKGVSIDYN 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A I+ DFR GK G ISLERP
Sbjct: 260 RLAHIIIGDFRSGKIGNISLERP 282
>gi|146318651|ref|YP_001198363.1| ribosomal biogenesis GTPase [Streptococcus suis 05ZYH33]
gi|146320857|ref|YP_001200568.1| ribosomal biogenesis GTPase [Streptococcus suis 98HAH33]
gi|253751770|ref|YP_003024911.1| ribosomal biogenesis GTPase [Streptococcus suis SC84]
gi|253753594|ref|YP_003026735.1| ribosomal biogenesis GTPase [Streptococcus suis P1/7]
gi|253755525|ref|YP_003028665.1| ribosomal biogenesis GTPase [Streptococcus suis BM407]
gi|386577875|ref|YP_006074281.1| GTP-binding protein [Streptococcus suis GZ1]
gi|386579927|ref|YP_006076332.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|386581951|ref|YP_006078355.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|403061512|ref|YP_006649728.1| GTPase YlqF [Streptococcus suis S735]
gi|145689457|gb|ABP89963.1| Predicted GTPase [Streptococcus suis 05ZYH33]
gi|145691663|gb|ABP92168.1| Predicted GTPase [Streptococcus suis 98HAH33]
gi|251816059|emb|CAZ51679.1| putative GTPase protein [Streptococcus suis SC84]
gi|251817989|emb|CAZ55771.1| putative GTPase protein [Streptococcus suis BM407]
gi|251819840|emb|CAR45821.1| putative GTPase protein [Streptococcus suis P1/7]
gi|292558338|gb|ADE31339.1| GTP-binding protein [Streptococcus suis GZ1]
gi|319758119|gb|ADV70061.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|353734097|gb|AER15107.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|402808838|gb|AFR00330.1| GTPase YlqF [Streptococcus suis S735]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAAKGLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P LQ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDVRDGRLGTYTLDR 275
>gi|347542420|ref|YP_004857057.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985456|dbj|BAK81131.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 286
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 135/263 (51%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDAR +STT+P ++ + +I+VL++ D+ A + W ++ KQG I
Sbjct: 24 VDLVIEIRDARAVISTTNPDIESLTNGKPKIIVLSKVDLADKATTSRWIEHYRKQGIPCI 83
Query: 61 ----FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 116
N + + +++ L K+ + RSKG+ +R I+G PNVGKSSLIN+
Sbjct: 84 DVDIIRNKNIKLIKDQINYLMKSKLD----RYRSKGVKNYTLRGMILGIPNVGKSSLINK 139
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERS 176
+ ++ RPGVT+ +W++ D++ LD+PGI+ + L I +
Sbjct: 140 ISNNKVAKVGNRPGVTKSNQWIKTKWDIDLLDTPGILWPKFESPNVGFNLVYIGSIRDEI 199
Query: 177 YDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV---QKLAL--HLFNGDTH 231
D+ +V ++Q L + L+N YK+DM K+ +KL F D
Sbjct: 200 LDIQEVCYNMLQYLLENYKMN---LENTYKVDMSDDVSKSLDILGKKLGCLSKGFLIDYD 256
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + I+ DFR GK G ISLE P
Sbjct: 257 RLSHIIIGDFRSGKIGNISLEDP 279
>gi|322387851|ref|ZP_08061459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|419843911|ref|ZP_14367216.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|321141353|gb|EFX36850.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|385702335|gb|EIG39480.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 136/253 (53%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ A W +F QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPALTKEWRQHFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPEKLQERFKQMNLDDEAPEIIMDMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|384455756|ref|YP_005668351.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959722|ref|ZP_12602472.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|417960827|ref|ZP_12603348.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|417962402|ref|ZP_12604612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|417965561|ref|ZP_12607069.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|417967252|ref|ZP_12608411.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|417968292|ref|ZP_12609325.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|418372609|ref|ZP_12964701.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|346984099|dbj|BAK79775.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380332721|gb|EIA23467.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|380335014|gb|EIA25312.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|380336373|gb|EIA26391.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|380337724|gb|EIA26736.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|380337767|gb|EIA26777.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|380339957|gb|EIA28612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|380342278|gb|EIA30723.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 286
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 16/263 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDAR +STT+P ++ ++ +I+VL++ D+ N W Y+ QG I
Sbjct: 24 VDLVIEIRDARSVISTTNPDIEMLTKDKPKIIVLSKVDLADNNTTNKWIEYYKNQGIPCI 83
Query: 61 ----FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 116
N + +++ L K+ + RSKG+ +R I+G PNVGKSSLIN+
Sbjct: 84 DVDIIRNKNIKNIKAQINFLMKSKLD----RYRSKGVKNYTLRGMILGIPNVGKSSLINK 139
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERS 176
+ ++ RPGVT+ +W++ D++ LD+PGI+ + + L + +
Sbjct: 140 ISNNKIAKVGNRPGVTKSNQWIKTKWDIDLLDTPGILWPKFDSTEVGLNLVYIGSVKDEI 199
Query: 177 YDVADVAAILVQMLARIPTVGITALQNRYKIDM--DGTCGKTFVQKLALHLFNG---DTH 231
DV DV +++ L + + L+++YK+++ D + + K L G D +
Sbjct: 200 LDVQDVCYNMLEYLLKNYRMN---LESKYKVEVSDDVSDSMDILGKKLGCLSKGVSIDYN 256
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ A I+ DFR GK G ISLERP
Sbjct: 257 RLAHIIIGDFRSGKIGNISLERP 279
>gi|385838407|ref|YP_005876037.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
gi|358749635|gb|AEU40614.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
Length = 282
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ + W YF QG +
Sbjct: 24 VDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDGQGFVTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL +
Sbjct: 84 AINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I + D+
Sbjct: 144 KVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKD---DLL 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
+ + + L + RY++ D++ ++ A F D +
Sbjct: 201 PMDEVTIFGLNHFLKNYRSMTMKRYRMTEEDLELEIPDLIMELTARFGFRDDYDRFYNMF 260
Query: 238 LTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 261 VKDVRDGKLGLFCLDE 276
>gi|148380400|ref|YP_001254941.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
3502]
gi|148289884|emb|CAL83992.1| putative GTPase [Clostridium botulinum A str. ATCC 3502]
Length = 292
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 136/265 (51%), Gaps = 19/265 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWIDSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID---------MDGTCGK--TFVQKLALHLFNGD 229
D+ + ++++ R+ L RYK++ +D K + K + D
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLNNLDNIGRKRGALISKGEI-----D 255
Query: 230 THQAAFRILTDFRKGKFGWISLERP 254
++ + IL +FR GK G ISLE P
Sbjct: 256 YNRISVIILDEFRGGKLGAISLEDP 280
>gi|399516927|ref|ZP_10758503.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Leuconostoc pseudomesenteroides 4882]
gi|398648181|emb|CCJ66530.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Leuconostoc pseudomesenteroides 4882]
Length = 281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ D+RIP S+ +P +D+ +G + R+L++ + D+ AW F +QG V+
Sbjct: 26 VDVVFELVDSRIPESSRNPEIDKLIGQKPRLLIMTKADLADPEQTRAWKKKFEEQGYTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +++ A+ + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVTKAARRAVEAKKEAQLARGIQDQPIRAMITGVPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ LE LDSPG++ + DQ +KL++ + +
Sbjct: 146 NVAPTADRPGVTKKVAWLKTQTKLELLDSPGVLWPKFEDQTIGMKLSLTGAVKYTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
D A L+ A+ RY + D + LA+ F D +A+ R+
Sbjct: 206 DAALFLIAFFRHYRP---EAVIERYHLSADIFEQENVDVLLAITAKLGFKDDYDKASERL 262
Query: 238 LTDFRKGKFGWISLE 252
L D RK K G +L+
Sbjct: 263 LNDLRKNKLGAFTLD 277
>gi|374337964|ref|YP_005094673.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
gi|372284073|emb|CCF02315.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
Length = 284
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADSNRTKEWRNYFEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQATVKLVTDAAKSLMADKIAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + + L R+K I+++ + QKL F D +
Sbjct: 205 EVTIFGINFFKKYYP---ERLVERFKGINLEEEAPEIIMAMTQKLG---FRDDYDRFYSL 258
Query: 237 ILTDFRKGKFGWISLE 252
+ D R+GK G +L+
Sbjct: 259 FVKDVREGKLGRYTLD 274
>gi|421490766|ref|ZP_15938133.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
gi|400371763|gb|EJP24712.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
Length = 283
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 139/257 (54%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF K+G K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPALTKEWRNYFEKKGVKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K + A++L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 PINSKEQSTVKKFTEAAQSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ +DLE LD+PGI+ + D+ A+KLA+ I + D+
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNRDLEILDTPGILWPKFEDEKVALKLALTGAIKD---DLL 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAFR 236
+ + + + LQ R+K +D++ + + QKL D + +R
Sbjct: 202 PMDEVTIFGINYFKEHYPKELQERFKQMDLEEEAPEIIMDMTQKLGFR----DDYDRFYR 257
Query: 237 I-LTDFRKGKFGWISLE 252
+ + D R GK G +L+
Sbjct: 258 LFIKDIRDGKLGRYTLD 274
>gi|385260394|ref|ZP_10038542.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
gi|385191658|gb|EIF39071.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
Length = 283
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 136/253 (53%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ A W +F QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPALTKEWRQHFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPDKLQERFKQMNLDDEAPEIIMDMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|168207942|ref|ZP_02633947.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|168215357|ref|ZP_02640982.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
gi|170660759|gb|EDT13442.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|170713263|gb|EDT25445.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
Length = 281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D + R+++LN+ D+ AW T V+
Sbjct: 24 VDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKESLTNDETIVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL RA +VG PNVGKS+ IN++ K
Sbjct: 84 EVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PG++ + D+ + LA I + D
Sbjct: 144 NIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNG-DT 230
++A LV+ R+ L RYK+ ++D K + A+ N D
Sbjct: 204 ELALKLVE---RLQETNPEELMTRYKLTELHENPLDNLDAIARK----RGAIMAGNQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A IL +FR GK G ISLE+P
Sbjct: 257 NRIAGIILDEFRGGKIGKISLEKP 280
>gi|417793389|ref|ZP_12440667.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
gi|334273117|gb|EGL91468.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
Length = 283
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 108/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D V+++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTNAAKKLMADKIVRQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILCPKFEDDAVALKLALTGAIKDQ 199
>gi|116512137|ref|YP_809353.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
SK11]
gi|116107791|gb|ABJ72931.1| Ras superfamily GTP-binding protein YlqF [Lactococcus lactis subsp.
cremoris SK11]
Length = 283
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 6/256 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ + W YF QG +
Sbjct: 25 VDFVIELVDARLPMSSRNPMLGQIIGDKPRIVALNKADLADSSKVAEWIEYFDGQGFVTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+ I + D+
Sbjct: 145 KVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKD---DLL 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
+ + + L + RY++ D++ ++ A F D +
Sbjct: 202 PMDEVTIFGLNHFLKNYRSMTMKRYRMTEEDLELEIPDLIMELTARFGFRDDYDRFYNMF 261
Query: 238 LTDFRKGKFGWISLER 253
+ D R GK G L+
Sbjct: 262 VKDVRDGKLGLFCLDE 277
>gi|424827560|ref|ZP_18252347.1| GTPase YlqF [Clostridium sporogenes PA 3679]
gi|365980000|gb|EHN16041.1| GTPase YlqF [Clostridium sporogenes PA 3679]
Length = 299
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 13/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPEIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ RA +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRAMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + D+
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKMDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLAR------IPTVGITALQNRYKIDMDGTCGK--TFVQKLALHLFNGDTHQ 232
+A LV+ L I + A++ ++D K + K ++ ++
Sbjct: 204 TLALRLVERLQDKYPERLIKRYKLEAIEENPLNNLDNIGRKRGALISKGEINY-----NR 258
Query: 233 AAFRILTDFRKGKFGWISLERP 254
+ +L +FR GK G ISLE P
Sbjct: 259 ISVILLDEFRGGKLGAISLEDP 280
>gi|110803463|ref|YP_698994.1| ribosomal biogenesis GTPase [Clostridium perfringens SM101]
gi|182625876|ref|ZP_02953642.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
gi|110683964|gb|ABG87334.1| GTP-binding protein [Clostridium perfringens SM101]
gi|177908910|gb|EDT71402.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
Length = 281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D + R+++LN+ D+ AW T V+
Sbjct: 24 VDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDETIVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL RA +VG PNVGKS+ IN++ K
Sbjct: 84 EVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PG++ + D+ + LA I + D
Sbjct: 144 NIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNG-DT 230
++A LV+ R+ L RYK+ ++D K + A+ N D
Sbjct: 204 ELALKLVE---RLQETNPEELMTRYKLTELHENPLDNLDAIARK----RGAIMAGNQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A IL +FR GK G ISLE+P
Sbjct: 257 NRIAGIILDEFRGGKIGKISLEKP 280
>gi|171779428|ref|ZP_02920392.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282045|gb|EDT47476.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 309
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF QG K +
Sbjct: 50 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADSNRTKEWRRYFESQGIKTL 109
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 110 AVNSKEQATVKLVTEAAKSLMADKLAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 169
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 170 KIAIVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMD 229
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAF 235
+V + P L RYK ID++ + + QKL F D +
Sbjct: 230 EVTIFGLNFFKEHYP----ERLIERYKGIDLEEEAPEIIIAMTQKLG---FRDDYDRFYA 282
Query: 236 RILTDFRKGKFGWISLE 252
+ D R+GK G +L+
Sbjct: 283 LFVKDVREGKLGRYTLD 299
>gi|168184648|ref|ZP_02619312.1| GTP-binding protein [Clostridium botulinum Bf]
gi|237795878|ref|YP_002863430.1| ribosomal biogenesis GTPase [Clostridium botulinum Ba4 str. 657]
gi|182672284|gb|EDT84245.1| GTP-binding protein [Clostridium botulinum Bf]
gi|229262006|gb|ACQ53039.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
Length = 292
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P ++ GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + ++
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + ++++ R+ L RYK++ +D + + D ++ +
Sbjct: 201 DIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDNIGRRRGALISKGEIDYNRIS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR GK G ISLE P
Sbjct: 261 VILLDEFRGGKLGAISLEDP 280
>gi|18310689|ref|NP_562623.1| ribosomal biogenesis GTPase [Clostridium perfringens str. 13]
gi|168216994|ref|ZP_02642619.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|422346378|ref|ZP_16427292.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|422874628|ref|ZP_16921113.1| GTPase YlqF [Clostridium perfringens F262]
gi|18145370|dbj|BAB81413.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|182380861|gb|EDT78340.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|373225923|gb|EHP48250.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|380304269|gb|EIA16558.1| GTPase YlqF [Clostridium perfringens F262]
Length = 281
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARIP S+ +P +D + R+++LN+ D+ AW T V+
Sbjct: 24 VDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDETIVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L + + + ++KGL RA +VG PNVGKS+ IN++ K
Sbjct: 84 EVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ +E +D+PG++ + D+ + LA I + D
Sbjct: 144 NIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNG-DT 230
++A LV+ R+ L RYK+ ++D K + A+ N D
Sbjct: 204 ELALKLVE---RLQETNPEELMTRYKLTELHENPLDNLDAIARK----RGAIMSGNQIDY 256
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
++ A IL +FR GK G ISLE+P
Sbjct: 257 NRIAGIILDEFRGGKIGKISLEKP 280
>gi|260893263|ref|YP_003239360.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
gi|260865404|gb|ACX52510.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
Length = 271
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 128/259 (49%), Gaps = 21/259 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+ VV E+ DARIP S+ +P + + L + R++VLN+ED+ AW Y ++G +
Sbjct: 24 VQVVFELLDARIPYSSRNPDIAELLAGKPRVVVLNKEDLADPQATRAWLAYLEREGHPAL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G KL + +A K G+L R +VG PNVGKSS INRL++
Sbjct: 84 AVNSLTGKGLNKLEEALRRVA-----KPGRTGIL----RGMVVGIPNVGKSSFINRLVRG 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +PGVT+ +W++ + E LD+PG++ R D +KLA+ + E DV
Sbjct: 135 RAAAVGAKPGVTKGKQWIKVTPNFELLDTPGVLWPRFEDPEVGLKLAVTGALKEEVIDVE 194
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DTHQA 233
A L L P AL RY G + F+++L + G D +A
Sbjct: 195 AAALWLAFWLQEHYP----DALAKRYPF-AAGKAPEEFLEELGRYRGFFLEGGCVDRVKA 249
Query: 234 AFRILTDFRKGKFGWISLE 252
A +L DFR+G+ G +L+
Sbjct: 250 AVALLKDFREGRLGRFTLD 268
>gi|407477585|ref|YP_006791462.1| ribosome biogenesis GTPase A [Exiguobacterium antarcticum B7]
gi|407061664|gb|AFS70854.1| Ribosome biogenesis GTPase A [Exiguobacterium antarcticum B7]
Length = 288
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIE+ DAR+P+S+ +P+++Q + R++VLN+ DM W K G V+
Sbjct: 24 IDVVIELVDARLPMSSRNPMVEQITAGKPRLIVLNKSDMADARLTEQWMKALRKDGVDVV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G ++ A L D + + R KG P A+RA I+G PNVGKS+LINRL R
Sbjct: 84 AVDAKHNKGLGQIHEGALRLMKDKHDRMRDKGRNPSAIRALIIGIPNVGKSTLINRLAGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGK-DLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
+ RPGVT+ +W++ ++E LD+PGI+ + DQ +LA I + ++
Sbjct: 144 NIAITGDRPGVTKRQQWIKMKTGEMELLDTPGILWPKFDDQMVGYRLAATGAIKDDILNI 203
Query: 180 ADVAAILVQML-ARIPTVGITALQNRYKID-MDGTCGKTF--VQKLALHLFNG--DTHQA 233
D+A ++ L R P L+ RY++D + G V K + +G D +
Sbjct: 204 DDIALFAMRELKTRYP----EQLKARYRLDEVTGEAVDVLEAVGKKRGFVTSGYVDFERT 259
Query: 234 AFRILTDFRKGKFGWISLE 252
+ +L + R K G ++LE
Sbjct: 260 SEMLLHELRTEKIGRVTLE 278
>gi|297206002|ref|ZP_06923397.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
gi|297149128|gb|EFH29426.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
Length = 280
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EV DARIP S+ +PL+ +G++ I++LN+ D+ + N W G V+
Sbjct: 24 LDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADLADPNEINKWEAKLKSDGKFVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K A D K +KG +R +VG PN GKS++INRL+ R
Sbjct: 84 KLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPTIRICLVGIPNCGKSTIINRLVGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ W++ + ++ LD+PGI+ + DQA +LA I E +
Sbjct: 144 NVAIVGDRPGVTKRQSWLKTSESVQILDTPGILWPKFEDQAVGFRLAALGSIKESVFHAD 203
Query: 181 DVAAILVQMLAR---IPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA +++ L V + L + D+ + + + D + + +
Sbjct: 204 DVALFVMEYLKENYFKSLVKFSRLSEQSVNDL--PLPELLLAMTEKYGMRDDYEKMSLFL 261
Query: 238 LTDFRKGKFGWISLER 253
L RKG+ G I+LE+
Sbjct: 262 LNQLRKGRLGRINLEK 277
>gi|81428605|ref|YP_395605.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|78610247|emb|CAI55296.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 282
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 134/258 (51%), Gaps = 6/258 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++E+ DAR+P S+ +P++ + N+ +L++N+ DM W F K+G I
Sbjct: 24 VDLILEIVDARVPESSINPMIQELGQNKPILLIMNKADMADPRRTQQWIETFKKRGITAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q + ++A+ + ++ K+R+KG+ +RA VG PNVGKS+++NRL+++
Sbjct: 84 ALDAQHKAKLPMIEKVAQEILAEKLAKKRAKGIRNPVIRAMCVGVPNVGKSTILNRLVQK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ G+ LE LD+PG++ + D KLA+ I + Y
Sbjct: 144 NIAVTGNRPGVTKNQQWLKAGQTLELLDTPGVLWPKFEDPTIGSKLALTGAISDAIYHPD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DV ++ + + LQ YK+ +++ + + F D + +
Sbjct: 204 DVVIFALEHFKEYYS---SQLQKVYKVTDAELEEPAAELIMILTKRLGFKEDYDRFCVKF 260
Query: 238 LTDFRKGKFGWISLERPP 255
+ D R+GK G +L+ P
Sbjct: 261 INDARQGKLGRFTLDVVP 278
>gi|406658358|ref|ZP_11066498.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
gi|405578573|gb|EKB52687.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
Length = 284
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ + W ++ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADKSRTQEWRRFYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQKLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDQLVGLKLALTGAIKDQLLPLD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V + A P L+ R+K I+++ + V+ F D + +
Sbjct: 205 EVTIFGLNFFKANYP----NRLEERFKGINLELEAPEIIVEMTRKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L+
Sbjct: 261 KDVRDGKLGVFTLDH 275
>gi|399889398|ref|ZP_10775275.1| GTPase YlqF [Clostridium arbusti SL206]
Length = 284
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 132/262 (50%), Gaps = 9/262 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RD+RI S+ +P ++ ++ RI++LN+ D+ AW +K + +
Sbjct: 26 VDAVIEIRDSRIVQSSANPEINTICKDKPRIILLNKCDLSEEKVTKAWINTLSKDNVRAL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G+G + L + + + KG++ +R +VG PNVGKSS IN++ K
Sbjct: 86 AINSLNGIGLKNIKGELDNLLKEKIDRLKQKGVMNVIIRVMVVGIPNVGKSSFINKMAKN 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +W++ +E +D+PG++ + ++ + LA I + DV
Sbjct: 146 TAAKIGDKPGVTRTKQWIKTKIGIELMDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVE 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQAA 234
++A LV+ L + L RYK+D ++ +A + N D ++ A
Sbjct: 206 ELALNLVERLQKYYP---NRLMERYKLDSLDETALENMENIARKRGAIISKGNIDYNRVA 262
Query: 235 FRILTDFRKGKFGWISLERPPR 256
+L +FR GK G ISLERP +
Sbjct: 263 VMLLDEFRGGKLGPISLERPKQ 284
>gi|289450641|ref|YP_003475452.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289185188|gb|ADC91613.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 280
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIP S+ +P +++ L N+ R+LVL+++D+ W + +
Sbjct: 25 VDLVIELADARIPASSRNPELNKLLLNKPRLLVLSKKDLADPTWTERWLNKYQTESLAAA 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G L++ + L +D + KG R VRA ++G PN GKS+LIN L R
Sbjct: 85 AFNLATIKGMNDLAQKCRELVADKLRRAEDKGRSGRPVRAMVLGIPNTGKSTLINSLAGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVTR L+WVR G DLE +D PG++ +I+ A + LA + ++ +DV
Sbjct: 145 KAVVTGDRPGVTRALQWVRTG-DLELMDVPGVLWPKITSAHAQLVLAATGAVKDQVFDVE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH--LFNG---DTHQAA 234
D+AA +++ LA + + L R K+ D+D + + + L +G +T + A
Sbjct: 204 DIAARMIECLAELYPL---PLMERLKLTDLDQPVWQLYEEGARNRGCLQSGGKLNTLRFA 260
Query: 235 FRILTDFRKGKFGWISLER 253
L + R GK G I+L+R
Sbjct: 261 TLFLDELRSGKMGKITLDR 279
>gi|256851136|ref|ZP_05556525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 27-2-CHN]
gi|260660560|ref|ZP_05861475.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 115-3-CHN]
gi|256616198|gb|EEU21386.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 27-2-CHN]
gi|260548282|gb|EEX24257.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 115-3-CHN]
Length = 280
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EV DARIP S+ +PL+ +G++ I++LN+ D+ + N W G V+
Sbjct: 24 LDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADLADPNEINKWEAKLKSDGKFVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K A D K +KG +R +VG PN GKS++INRL+ R
Sbjct: 84 KLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPTIRICLVGIPNCGKSTIINRLVGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ W++ + ++ LD+PGI+ + DQA +LA I E +
Sbjct: 144 NVAIVGDRPGVTKGQSWLKTSESVQILDTPGILWPKFEDQAVGFRLAALGSIKESVFHAD 203
Query: 181 DVAAILVQMLAR---IPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA +++ L V + L + D+ + + + D + + +
Sbjct: 204 DVALFVMEYLKENYFKSLVKFSRLSEQSVNDL--PLPELLLAMTEKYGMRDDYEKMSLFL 261
Query: 238 LTDFRKGKFGWISLER 253
L RKG+ G I+LE+
Sbjct: 262 LNQLRKGRLGRINLEK 277
>gi|414074437|ref|YP_006999654.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974357|gb|AFW91821.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 282
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR+P+S+ +P++ Q +G++ RI+ LN+ D+ + W YF QG +
Sbjct: 24 VDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDGQGFVTL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +L+ AK L +D + +G+ +R I+G PN GKS+L+NRL +
Sbjct: 84 AINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ RPGVT+ +W+R K+LE LD+PGI+ + DQ +KLA+
Sbjct: 144 KVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKFEDQLVGLKLALT 192
>gi|335996549|ref|ZP_08562466.1| GTP-binding protein [Lactobacillus ruminis SPM0211]
gi|335351619|gb|EGM53110.1| GTP-binding protein [Lactobacillus ruminis SPM0211]
Length = 274
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P +++ L N+K I+VL + D+ W Y+ + G I
Sbjct: 15 VDIVLELVDARLPESSRNPQLEELLQNKKSIIVLTKMDLADPKLTREWIAYYEQNGHPAI 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G ++ + L + K ++G+ ++A +G PNVGKS+L+NRL+K+
Sbjct: 75 AVNSNQGTLPAIEKKIKEVLKEKIAAKE-ARGIKNSRIKAMCIGIPNVGKSTLLNRLVKK 133
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L LD+PGI+ + D KLA+ + + Y
Sbjct: 134 NVAIVGNKPGVTKAQQWLKAGSSLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKD 193
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA ++ AL RYK+ D+D + + F D +A+ R+
Sbjct: 194 DVALYELEYFV---DNHPQALTERYKLDESDLDQPTVELLLSITKKMGFKEDYDRASERL 250
Query: 238 LTDFRKGKFGWISLERPPR 256
+ + RKGK G +L+ P+
Sbjct: 251 IFECRKGKLGHFTLDAVPK 269
>gi|288905301|ref|YP_003430523.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
gi|306831380|ref|ZP_07464539.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978286|ref|YP_004288002.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337746|ref|YP_006033915.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732027|emb|CBI13592.1| putative conserved GTP-binding protein [Streptococcus gallolyticus
UCN34]
gi|304426440|gb|EFM29553.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178214|emb|CBZ48258.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280382|dbj|BAK27956.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 284
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADSNRTKEWRNYFEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ A++L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQATVKLVTDAARSLMADKLAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + + L R+K I+++ + QKL F D +
Sbjct: 205 EVTIFGLNFFKKYYP---ERLVERFKGINLEEEAPEIIMAMTQKLG---FRDDYDRFYSL 258
Query: 237 ILTDFRKGKFGWISLE 252
L D R+GK G +L+
Sbjct: 259 FLKDVREGKLGRYTLD 274
>gi|257125138|ref|YP_003163252.1| HSR1-like GTP-binding protein [Leptotrichia buccalis C-1013-b]
gi|257049077|gb|ACV38261.1| GTP-binding protein HSR1-related [Leptotrichia buccalis C-1013-b]
Length = 291
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 22/273 (8%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPLS+ +P + + N+K+I+VLN+ D++ + W YF +
Sbjct: 24 IDIVIEILDARIPLSSKNPDISKLANNKKKIIVLNKVDLVDSKELKVWEDYFLENKFSDY 83
Query: 61 FSNGQLGMGTM--KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
F + GT +L ++ + ++ K + KGL VRA IVG PNVGKS IN+ +
Sbjct: 84 FVALSVEKGTNFNELRKITDKIYAEKLEKMKKKGLRKTEVRAMIVGIPNVGKSKFINKFV 143
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ PG TR +W++ + LE LD+PG++ + D A LAI I + +
Sbjct: 144 NKNKARVGNTPGFTRGKQWIKIDEKLELLDTPGVLWPKFEDDEVAYNLAITGSIKD---N 200
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH-----------LF 226
V + I ++ L ++ +G + N K+ ++ + K+ H +
Sbjct: 201 VLPLEQIAMKFLDKLKDLG--KIDNLIKVYNLQENINTEEILKMENHKILEVLEKRLGIS 258
Query: 227 NGDTHQAAF---RILTDFRKGKFGWISLERPPR 256
D H R++ D+R GK G LE P +
Sbjct: 259 KNDEHNYEIISRRLIRDYRIGKIGKFFLEYPKK 291
>gi|418017710|ref|ZP_12657266.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
gi|345526559|gb|EGX29870.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
Length = 284
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFENQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWSKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|389856593|ref|YP_006358836.1| GTP1/OBG protein [Streptococcus suis ST1]
gi|353740311|gb|AER21318.1| GTP1/OBG protein [Streptococcus suis ST1]
Length = 283
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTEAAKSLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P L+ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLEERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 261 KDVRDGRLGTYTLDK 275
>gi|51892611|ref|YP_075302.1| hypothetical protein STH1473 [Symbiobacterium thermophilum IAM
14863]
gi|51856300|dbj|BAD40458.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 286
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DAR PL++ +P + + ++ ++L+LN+ D+ A W + G +
Sbjct: 23 VDVVLEIVDARCPLASRNPDLMALVAHKPQVLILNKADLADPAATRLWVERLNEPGRPAV 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ + + V +KG PR R VG PNVGKSS INRL+
Sbjct: 83 ALDAVRGTGAREVLAAIRRAFAPVLRAWTAKGRKPRPARVMAVGIPNVGKSSAINRLVGA 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R P +PGVTR +W+R GKD+E LD PGI+ + DQ + LA I + +D
Sbjct: 143 RRAPVGDKPGVTRGKQWIRIGKDVELLDMPGILVPKFEDQRDGLLLAATGAIKDEVFDQR 202
Query: 181 DVAAILVQMLARIPTVGITALQNRY---KIDMDGTCGKTFVQKLALHLFNG---DTHQAA 234
+VA L+ ++ ++G A+ RY ++D + + + L G D AA
Sbjct: 203 EVANHLLHLIWE--SLG-AAVAERYGLTRLDPEPVANLEAIGRFRGLLRAGEQVDLDAAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
+L +FR+G+ G ++L+ P
Sbjct: 260 QLVLREFREGRLGRVTLQPP 279
>gi|357637618|ref|ZP_09135493.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
gi|357586072|gb|EHJ53275.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
Length = 283
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++LVLN+ D+ + W Y+ K+G KV+
Sbjct: 25 IDFVTILADARLPLSSQNPMLNKIVGDKSKLLVLNKADLADKQETAKWCAYYKKEGLKVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ AKAL S KG+ +R I+G PNVGKS+L+NRL +
Sbjct: 85 AINAKEQGVIKQINGAAKALMSAKFEHLHKKGIQSNMMRTMIIGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDI 172
++ +PG+T+ +W++ KDLE LD+PGI+ + DQ +KLA+ I
Sbjct: 145 KIASVGNKPGITKGQQWLKTNKDLEILDTPGILWPKFEDQFVGLKLALTGAI 196
>gi|222153078|ref|YP_002562255.1| ribosomal biogenesis GTPase [Streptococcus uberis 0140J]
gi|222113891|emb|CAR42061.1| putative GTPase protein [Streptococcus uberis 0140J]
Length = 284
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 136/255 (53%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++++LN+ D+ + W Y+ +QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGEKPKLMILNKADLADQSLTKEWCRYYEEQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L ++ K + +G+ +++R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTEAAKKLMAEKLQKLKERGIQKQSLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEEVGLKLALTGAIKDQLLPLD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L P L+ R+K I++D + ++ F D + +
Sbjct: 205 EVTIFGLNYFKHHYP----NRLEERFKGINLDLETPEIIMEMTKNLGFKDDYDRFYNLFI 260
Query: 239 TDFRKGKFGWISLER 253
+ R GK G +L++
Sbjct: 261 KEIRDGKLGVFTLDQ 275
>gi|323339886|ref|ZP_08080155.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|417974042|ref|ZP_12614866.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
gi|323092759|gb|EFZ35362.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|346329497|gb|EGX97792.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
Length = 284
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P +++ L N+K I+VL + D+ W Y+ + G I
Sbjct: 25 VDIVLELVDARLPESSRNPQLEELLQNKKSIIVLTKMDLADPKLTREWIAYYEQNGHPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G ++ + L + K ++G+ ++A +G PNVGKS+L+NRL+K+
Sbjct: 85 AVNSNQGTLPAIEKKIKEVLKEKIAAKE-ARGIKNSRIKAMCIGIPNVGKSTLLNRLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L LD+PGI+ + D KLA+ + + Y
Sbjct: 144 NVAIVGNKPGVTKAQQWLKAGSSLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA ++ AL RYK+ D+D + + F D +A+ R+
Sbjct: 204 DVALYELEYFV---DNHPQALTERYKLDESDLDQPTVELLLSITKKMGFKEDYDRASERL 260
Query: 238 LTDFRKGKFGWISLERPPR 256
+ + RKGK G +L+ P+
Sbjct: 261 IFECRKGKLGRFTLDAVPK 279
>gi|387761208|ref|YP_006068185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
gi|339291975|gb|AEJ53322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
Length = 284
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTDKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|332523230|ref|ZP_08399482.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
gi|332314494|gb|EGJ27479.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
Length = 287
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 134/257 (52%), Gaps = 10/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ + W ++ +G K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADQSRTKEWQQFYESKGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ A+AL +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAARALMTDKIAKLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQVVGLKLALTGAIKDQLLPLD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + L R+K I+++ T QKL F D +
Sbjct: 205 EVTIFGLNYFKEYYP---NRLIERFKGINLEAEAPDIIITMTQKLG---FRDDYDRFYTL 258
Query: 237 ILTDFRKGKFGWISLER 253
+ + R GK G +L++
Sbjct: 259 FIKEVRDGKLGTFTLDQ 275
>gi|58337275|ref|YP_193860.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227903861|ref|ZP_04021666.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|58254592|gb|AAV42829.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227868252|gb|EEJ75673.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 284
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 1/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EV DARIP S+ +P++++ +GN+ I++LN+ D+ WA F+ V+
Sbjct: 25 IDVLVEVLDARIPESSRNPMIEELVGNKPHIIILNKADLADPILTKKWAEKFSGPDKYVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ KL L K ASD K ++G +R + G PN GKS++INRL+ R
Sbjct: 85 ALDSLHNTNMQKLISLVKKAASDKTKKLEARGASNPTIRIALAGIPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ +++ LD+PGI+ + SDQ KLA I + +
Sbjct: 145 NVAEVGNKPGVTKGQRWLKTSANIQVLDTPGILWPKFSDQTVGYKLAAFGAIKDSIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAAFRILT 239
DVA +++ L + D++ + + D + + +L
Sbjct: 205 DVALYVLERLREYYLKDLIKFSKLNSADIENLSDADILLAMTEKYGMRDDYDRFSLFMLQ 264
Query: 240 DFRKGKFGWISLERP 254
RKG G I+L+RP
Sbjct: 265 RLRKGAIGRITLDRP 279
>gi|385261963|ref|ZP_10040078.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
gi|385191704|gb|EIF39116.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
Length = 283
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+L +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGILIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|322385536|ref|ZP_08059180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|417921041|ref|ZP_12564536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|321270274|gb|EFX53190.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|342834961|gb|EGU69219.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
Length = 283
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF +G K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPTLTKEWQAYFESRGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D ++R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSAVKKVTEAAKKLMADKLARQRERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAIVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAF 235
+V L P ALQ R+K +D++ + QKL F D +
Sbjct: 205 EVTIFGLNYFKEHYP----KALQERFKQLDLELEAPDMIMDMTQKLG---FREDYDRFYS 257
Query: 236 RILTDFRKGKFGWISLE 252
+ + R G+ G +L+
Sbjct: 258 LFVKEVRDGRLGRYTLD 274
>gi|238855691|ref|ZP_04645988.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 269-3]
gi|260664446|ref|ZP_05865298.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii SJ-7A-US]
gi|313472153|ref|ZP_07812645.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 1153]
gi|238831676|gb|EEQ24016.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 269-3]
gi|239529525|gb|EEQ68526.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 1153]
gi|260561511|gb|EEX27483.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii SJ-7A-US]
Length = 280
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 127/256 (49%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EV DARIP S+ +PL+ +G++ I++LN+ D+ + N W G V+
Sbjct: 24 LDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADLADPNEINKWEAKLKSDGKFVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L +L K A + K +KG +R +VG PN GKS++INRL+ R
Sbjct: 84 KLDAQHNTNMTPLFKLIKLAAKERIDKLEAKGASNPTIRICLVGIPNCGKSTIINRLVGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ W++ + ++ LD+PGI+ + DQA +LA I E +
Sbjct: 144 NVAIVGDRPGVTKGQSWLKTSESVQILDTPGILWPKFEDQAVGFRLAALGSIKESVFHAD 203
Query: 181 DVAAILVQMLAR---IPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRI 237
DVA +++ L V + L + D+ + + + D + + +
Sbjct: 204 DVALFVMEYLKENYFKSLVKFSRLTEQEVTDL--PLPELLLAMTEKYGMRDDYEKMSLFL 261
Query: 238 LTDFRKGKFGWISLER 253
L RKG+ G I+LE+
Sbjct: 262 LNQLRKGRLGRINLEK 277
>gi|347525434|ref|YP_004832182.1| GTPase [Lactobacillus ruminis ATCC 27782]
gi|345284393|gb|AEN78246.1| GTP-binding protein, GTPase [Lactobacillus ruminis ATCC 27782]
Length = 284
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P +++ L N+K I+VL + D+ W Y+ + G I
Sbjct: 25 VDIVLELVDARLPESSRNPQLEELLQNKKSIIVLTKMDLADPKLTREWIAYYEQNGHPAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G ++ + L + K ++G+ ++A +G PNVGKS+L+NRL+K+
Sbjct: 85 AVNSNQGTLPAIEKKIKEVLKEKIAAKE-ARGIKNSRIKAMCIGIPNVGKSTLLNRLVKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ G L LD+PGI+ + D KLA+ + + Y
Sbjct: 144 NVAIVGNKPGVTKAQQWLKAGSSLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL---FNGDTHQAAFRI 237
DVA ++ AL RYK+D T L++ F D +A+ R+
Sbjct: 204 DVALYELEYFV---DNHPQALTERYKLDESDLDQPTVELLLSITRKMGFKEDYDRASERL 260
Query: 238 LTDFRKGKFGWISLERPPR 256
+ + RKGK G +L+ P+
Sbjct: 261 IFECRKGKLGRFTLDAVPK 279
>gi|114567011|ref|YP_754165.1| GTP-binding protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337946|gb|ABI68794.1| Ras superfamily GTP-binding protein YlqF [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 278
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 139/259 (53%), Gaps = 11/259 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ + + DAR P S + +++ N+K ++VLN+ D+ S + ++G V
Sbjct: 24 VDIALILLDARAPFSCRNSDLEKIARNKKVVMVLNKADLASPEAIRRYMQALEQEGFLVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G + R+AK+ + + + KG PRA+RA ++G PN+GKS+ +N L+ +
Sbjct: 84 TMDSLSGKGRQAVLRMAKSAFREKAEELQRKGRRPRAIRAMVMGVPNIGKSTFLNCLVGQ 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVTR +WVR +D+E LD+PG++ R+ + +KLA+ D +GE +Y
Sbjct: 144 KIAQTGAKPGVTRGKQWVRLHEDIELLDTPGLMWPRVESEEQGLKLALLDIVGENAYSEY 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKIDMDGTCGKTFVQKLAL---HLFNG---DTHQA 233
+V L+ +L + P + L + +D+ + + +A +L G D +
Sbjct: 204 EVGLYLLSILKDKHPQI----LLEKLGLDVGNQLEEEMLAAIARKRGYLLKGGVPDLDKT 259
Query: 234 AFRILTDFRKGKFGWISLE 252
+L +FR+GK G ISL+
Sbjct: 260 CQVLLQEFRRGKLGTISLD 278
>gi|304384965|ref|ZP_07367311.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|418069181|ref|ZP_12706461.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
gi|304329159|gb|EFL96379.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|357537914|gb|EHJ21937.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
Length = 287
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP+S+ +P+++ + ++ +L+L + D+ + W YF K G +
Sbjct: 25 VDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTKADLADPQETQRWLEYFRKNGDHAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + + +A+ +D S+G+ +++ +G PNVGKS+L+N L+ +
Sbjct: 85 ALNSKEPSTEKIILKHTRAILADKLENWESRGIKKTEIKSMCIGIPNVGKSTLLNHLVNK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W++ + L LD+PGI+ + DQ+ KLA I + Y
Sbjct: 145 KVAITGDRPGVTKKQQWLKSRQGLYLLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYAND 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV---QKLALHLFNGDTHQAAFRI 237
DVA +Q+ + G+ + D D + + QKL + D +A+ RI
Sbjct: 205 DVALFGLQIFSEKYRNGLMERYHLTDEDFDQPLPELLLLITQKLGMR---DDYDRASQRI 261
Query: 238 LTDFRKGKFGWISLE 252
L D RKGK G +L+
Sbjct: 262 LLDARKGKLGRFNLD 276
>gi|300173224|ref|YP_003772390.1| GTP-binding protein RbgA [Leuconostoc gasicomitatum LMG 18811]
gi|299887603|emb|CBL91571.1| GTP-binding protein RbgA [Leuconostoc gasicomitatum LMG 18811]
Length = 284
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 129/252 (51%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+ E+ DARIP S+ +P +D+ +G++ R+L++ + D+ AW F +G V+
Sbjct: 26 VDVIFELVDARIPESSRNPEVDKLIGSKPRLLIMTKADLADPEQIRAWKARFESEGHTVL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + + A+ + + ++G+ + +RA I G PNVGKS+L+N L+ +
Sbjct: 86 VLDTRDPRTPQLVIKAARRAVASKKAAQTARGIQDQPIRAMITGIPNVGKSTLLNHLVMK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ P A RPGVT+ + W++ L+ LDSPG++ + DQ +KLA+ + + +
Sbjct: 146 NVAPTADRPGVTKKIAWLKTPTKLDLLDSPGVLWPKFEDQVIGMKLALTGAVKDTIFAKD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 240
D A L+ I + + D + ++ F + +A+ R+L D
Sbjct: 206 DAALFLIGFFRNYRPESIIERYHLTEDIFDQENVQILLEITNKLGFKDNYEKASERLLND 265
Query: 241 FRKGKFGWISLE 252
RKGK G +L+
Sbjct: 266 LRKGKLGTFTLD 277
>gi|229829014|ref|ZP_04455083.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
gi|229792177|gb|EEP28291.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
Length = 281
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DARIPL++ +P +DQ ++ R+++LN+ D+ + W YF +QG V+
Sbjct: 24 IDLVIELLDARIPLASRNPEIDQLARDKARMILLNKADLSDPKMTSRWKEYFERQGMTVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSK----GLLPRAVRAGIVGYPNVGKSSLINR 116
+ + + L + + D K+R++ G+ R VRA I G PNVGKS+LIN
Sbjct: 84 ALDSR----SASLRKPMQKAIMDATEKKRARDLRRGIKNRPVRAMIAGIPNVGKSTLINS 139
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERS 176
L R +PGVT+ +W+ +++ LD+PGI+ + DQ I LA+ I +
Sbjct: 140 LAGRAAARTGNKPGVTKGKQWIHLRDNIDLLDTPGILWPKFEDQETGIHLAMIGAISDHV 199
Query: 177 YDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---DT 230
V D++ ++ L R G+ L +RY +D + + +AL L G D
Sbjct: 200 LQVEDLSLKVIHFL-REAYPGV--LSDRYAVDEEKE-DVDILSAIALKRGCLVRGNEIDY 255
Query: 231 HQAAFRILTDFRKGKFGWISLE 252
+ A L +FRKG+ G IS+E
Sbjct: 256 RKTADLFLDEFRKGQLGRISIE 277
>gi|293374718|ref|ZP_06621026.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325840619|ref|ZP_08167100.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
gi|292646632|gb|EFF64634.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325490268|gb|EGC92601.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
Length = 290
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+++P+M++ + ++ ++++LN+ DM W YF +QG I
Sbjct: 24 VDIVFELLDARIPYSSSNPMMNEIIKHKPKLIILNKVDMADPNVTQQWLNYFKEQGQPAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ +++ +K + + K ++KGL PR VRA I+G PNVGKS+L+N L KR
Sbjct: 84 TIDALHQNAIKQITEASKEILKEKFAKEKAKGLRPRPVRAMILGIPNVGKSTLMNNLAKR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDI 172
+ RPGVT+ +WV+ G++LE LD+PG++ + ++ LA+ I
Sbjct: 144 KAAQTGDRPGVTKAQQWVKVGQELELLDTPGVLWPKFEEKRVGYNLAVTGAI 195
>gi|157151133|ref|YP_001450489.1| ribosomal biogenesis GTPase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075927|gb|ABV10610.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 283
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++LVLN+ D+ W TYF QG +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGEKPKLLVLNKADLADPVRLKEWQTYFEGQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 ALNSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPDELTSRFKQLDISQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|387784251|ref|YP_006070334.1| GTP-binding protein [Streptococcus salivarius JIM8777]
gi|338745133|emb|CCB95499.1| GTP-binding protein [Streptococcus salivarius JIM8777]
Length = 284
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|350567000|ref|ZP_08935611.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
indolicus ATCC 29427]
gi|348659891|gb|EGY76609.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
indolicus ATCC 29427]
Length = 282
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 134/257 (52%), Gaps = 9/257 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D IE+ DARIP+++ +P++ + L N+K +L+LN+ D+ + W + + +
Sbjct: 24 VDFYIEIIDARIPIASRNPILSKVLQNKKGLLILNKTDLSNSEQNELWKKKLSDDNNRAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ + R A D K+ KG+ +RA IVG PN GKS+ IN + K
Sbjct: 84 LYSAAKPNSSL-IVREALNFMKDEIAKKEEKGINMGPLRAMIVGIPNSGKSTFINGISKT 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ L LD+PG++ + D+ + LA I + ++
Sbjct: 143 KSAKVGNRPGVTKTNQWIKLNPKLHLLDTPGVLWPKFEDEKVGLNLAFTGAIKD---EIM 199
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG---TCGKTFVQKLALHLFNG--DTHQAAF 235
D+ ++++++ R+ ++ L+NRY +++DG + +K + G D + A
Sbjct: 200 DIETLVLRLIERLISIDENILKNRYNVEVDGEPIEVMERIGRKRGAIVKGGEIDYSKVAN 259
Query: 236 RILTDFRKGKFGWISLE 252
+L +FRKG G I+LE
Sbjct: 260 IVLDEFRKGVLGNITLE 276
>gi|15895038|ref|NP_348387.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum ATCC 824]
gi|15024731|gb|AAK79727.1|AE007685_3 Predicted GTPase, YLQF B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
Length = 283
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARI S+++P ++ ++ RI++LN+ D+ + + W + + + I
Sbjct: 27 VDAVIEIRDARIVYSSSNPDINSICKDKPRIILLNKFDLAEKSITDNWVKALSSESIRAI 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L +KG+ +R +VG PNVGKSS IN++ K
Sbjct: 87 PVNALEGRGLNSIKPALNELLKPKLDNMAAKGIQNYIIRVMVVGIPNVGKSSFINKMAKN 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ +E +D+PG++ + DQ + LA I + D+
Sbjct: 147 KVAKVGNKPGVTKSKQWIKTNIGIELMDTPGVLWPKFQDQKVGLNLAFTGAIKDEIMDIE 206
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK---IDMDGTCGKTFVQKLALHLFNG---DTHQA 233
++A LVQ L + P L RYK I+ D + L G D ++
Sbjct: 207 ELALKLVQFLQKNYP----EKLMERYKLEDINEDPLINMNNIAAKRGALLKGGEIDYNRV 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ I+ +FR GK G ISLERP
Sbjct: 263 SIIIVDEFRSGKIGKISLERP 283
>gi|306833476|ref|ZP_07466603.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|336064249|ref|YP_004559108.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
gi|304424246|gb|EFM27385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|334282449|dbj|BAK30022.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 284
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W YF KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADSNRTKEWRNYFEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQATVKLVTDAAKSLMADKLAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEIVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + + L R+K I ++ + QKL F D +
Sbjct: 205 EVTIFGLNFFKKYYP---ERLVERFKGISLEEEAPEIIMAMTQKLG---FRDDYDRFYSL 258
Query: 237 ILTDFRKGKFGWISLE 252
+ D R+GK G +L+
Sbjct: 259 FVKDVREGKLGRYTLD 274
>gi|373496782|ref|ZP_09587327.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
12_1B]
gi|404368391|ref|ZP_10973743.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
ulcerans ATCC 49185]
gi|313687691|gb|EFS24526.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
ulcerans ATCC 49185]
gi|371964761|gb|EHO82267.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
12_1B]
Length = 287
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--GTK 58
+D+V+EV DARIPLS+ +P + + N+KR++VLN+ D++ ++ W YF + +
Sbjct: 27 IDIVLEVVDARIPLSSKNPDISVFAKNKKRVIVLNKSDLVEKSEILYWKKYFKENNLADE 86
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
V+ + + G L + ++++ K ++KGL R +VG PNVGKS LINR++
Sbjct: 87 VLEISAETGFNIKALYSIIDKVSAEKKEKMKAKGLRKVNTRLMVVGIPNVGKSRLINRIV 146
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
+ +PG T+ +WVR + LE LD+PGI+ + LAI I +
Sbjct: 147 GKSSAGVGNKPGFTKGKQWVRIKEGLELLDTPGILWPKFESDEVGQNLAITGAIRDEILP 206
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFVQKLAL--HLFNG----D 229
+ D++ IL+ + + I L+ RYK+ D G+ ++K+AL +FN +
Sbjct: 207 IEDISCILISKMIKYGLWNI--LKERYKLLDEDKSEIMGE-ILEKIALRNKMFNKGESLN 263
Query: 230 THQAAFRILTDFRK---GKFG 247
QAA+ +L D+R KFG
Sbjct: 264 IQQAAYTVLRDYRNCRLSKFG 284
>gi|332981642|ref|YP_004463083.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
gi|332699320|gb|AEE96261.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
Length = 277
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 135/263 (51%), Gaps = 20/263 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIEV D+R P+S+ ++D+ +G++ RI+VLN+ D+ + W Y + K +
Sbjct: 24 VDIVIEVVDSRAPISSRDAVLDKMIGHKARIIVLNKADLADKRAVDTWLKYLKSKDVKAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + G KL + +++ + + RR K A IVG PNVGKS+++N L K
Sbjct: 84 AINAKSGADISKLKDIMRSVENQ-HKDRRVKN-------AMIVGIPNVGKSTILNALAKS 135
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPG+TR + W + + + +D+PGI+ + ++ + LA I + + D+
Sbjct: 136 RRTQVGARPGITRQVGWFKV-DEFQIMDTPGILKPNLKNEIVKLHLACIGAIDDAAVDIE 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--------DTHQ 232
++A L+ +L + + L RY + + ++ A+ + G D H+
Sbjct: 195 EIAVSLLDIL---QSRYLDRLSQRYGVSITDKRVNSYELLSAICMNKGWLKSGGEADIHR 251
Query: 233 AAFRILTDFRKGKFGWISLERPP 255
A ++ DFRKG G I+LE PP
Sbjct: 252 GAAALIDDFRKGAIGPITLEMPP 274
>gi|337736979|ref|YP_004636426.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
gi|384458486|ref|YP_005670906.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|325509175|gb|ADZ20811.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|336292584|gb|AEI33718.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
Length = 283
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+RDARI S+++P ++ ++ RI++LN+ D+ + + W + + + I
Sbjct: 27 VDAVIEIRDARIVYSSSNPDINSICKDKPRIILLNKFDLAEKSITDNWVKALSSESIRAI 86
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + L +KG+ +R +VG PNVGKSS IN++ K
Sbjct: 87 PVNALEGRGLNSIKPALNELLKPKLDNMAAKGIQNYIIRVMVVGIPNVGKSSFINKMAKN 146
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ +E +D+PG++ + DQ + LA I + D+
Sbjct: 147 KVAKVGNKPGVTKSKQWIKTNIGIELMDTPGVLWPKFQDQKVGLNLAFTGAIKDEIMDIE 206
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK---IDMDGTCGKTFVQKLALHLFNG---DTHQA 233
++A LVQ L + P L RYK I+ D + L G D ++
Sbjct: 207 ELALKLVQFLQKNYP----EKLMERYKLEDINEDPLINMNNIAAKRGALLKGGEIDYNRV 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ I+ +FR GK G ISLERP
Sbjct: 263 SIIIVDEFRSGKIGKISLERP 283
>gi|170759247|ref|YP_001787754.1| ribosomal biogenesis GTPase [Clostridium botulinum A3 str. Loch
Maree]
gi|169406236|gb|ACA54647.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
Length = 292
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 11/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IE+RDARI S+ +P + GN+ RI++LN++D+ W ++ KV+
Sbjct: 24 VDAIIEIRDARIVSSSKNPDIKDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNIKVL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G K+ L + + + ++KGL+ R +VG PNVGKSS IN++ K
Sbjct: 84 AVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +W++ D+E +D+PG++ ++ + + LA I + D+
Sbjct: 144 SIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIE 203
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQA 233
+A LV+ L + P L RYK++ +D + + D ++
Sbjct: 204 TLALRLVERLQIKYP----ERLMKRYKLEALEENPLDNLDNIGRKRGALISKGEIDYNRI 259
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ +L +FR GK G ISLE P
Sbjct: 260 SVILLDEFRGGKLGAISLEDP 280
>gi|386586047|ref|YP_006082449.1| GTP1/OBG protein [Streptococcus suis D12]
gi|353738193|gb|AER19201.1| GTP1/OBG protein [Streptococcus suis D12]
Length = 283
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDAAKSLMKEKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P LQ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLQERFKGMDLELETPELIMDWTRKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDIRDGRLGTYTLDR 275
>gi|331269648|ref|YP_004396140.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
gi|329126198|gb|AEB76143.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
BKT015925]
Length = 280
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 131/263 (49%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARI S+ +P +D N+ RI++LN+ D+ W + + +V
Sbjct: 24 VDIVIEIRDARIVKSSANPDIDDICKNKPRIILLNKSDLSEEKVTKEWIKKLSNEFIRVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + L + + R+KG++ RA +VG PNVGKSS IN++ K
Sbjct: 84 SVNCVTGKGLNSIKPMINDLLKQKHDRLRAKGVVNITTRAMVVGIPNVGKSSFINKMAKN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ +E LD+PG++ + D+ + LA I + ++
Sbjct: 144 NTAKVGDKPGVTKNKQWIKTKMGIELLDTPGVLWPKFEDEQVGLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---------DMDGTCGKTFVQKLALHLFNGDTH 231
D+ + +++ ++ L RYK+ +MD K + + N D +
Sbjct: 201 DIETLAFKLIGKLQEEYPKRLMERYKLNSLSDDTLENMDNIGRK---RGAVISGGNIDYN 257
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
+ + IL + R GK G ISLERP
Sbjct: 258 RVSVLILDELRGGKLGSISLERP 280
>gi|322516897|ref|ZP_08069795.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus vestibularis ATCC 49124]
gi|322124553|gb|EFX96032.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis ATCC 49124]
Length = 277
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 18 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFETQGIKTL 77
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 78 AINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 137
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 138 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 197
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 198 EVT---IFGLNYFKTYYPERLEERFKGIDIEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 254
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 255 EVRDGKLGRYTLD 267
>gi|312862638|ref|ZP_07722878.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
gi|311101498|gb|EFQ59701.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
Length = 284
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFETQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMDDKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K ID++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|322373052|ref|ZP_08047588.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|421452532|ref|ZP_15901893.1| GTP-binding protein [Streptococcus salivarius K12]
gi|321278094|gb|EFX55163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|400182963|gb|EJO17225.1| GTP-binding protein [Streptococcus salivarius K12]
Length = 284
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W TYF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRTYFKSQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K I+++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIELEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|347534422|ref|YP_004841092.1| ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504478|gb|AEN99160.1| Ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 287
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 134/259 (51%), Gaps = 6/259 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP ++ +P + + ++ R+++L + D+ W YF QG + I
Sbjct: 26 VDIVFELVDARIPYTSINPEVKRISRDKPRLMILTKADLADPVMTKKWIEYFKSQGIRAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ ++ K+ +++ + D + +KG +A++A VG PNVGKS+L+N+L+ +
Sbjct: 86 AIDSKVNGVRKKIENISEGILKDYLESQSNKGYDRKALKAICVGVPNVGKSTLLNQLVSK 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W+ L LD+PGI+ + Q A KL++ I E S+
Sbjct: 146 RSAQVGNRPGVTKGQQWLTSNGKLVLLDTPGILWPKFQSQEIAEKLSLTGAIRESSFHSD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGK-TFVQKLALHL-FNGDTHQAAFRI 237
DVA + + L+NRY + D D + K+ +L D +A+ RI
Sbjct: 206 DVALFALDFFKQNHR---EELKNRYHLTDADFELSNPDLLLKITANLGMRDDYERASDRI 262
Query: 238 LTDFRKGKFGWISLERPPR 256
+ D RKGK G +L+ P +
Sbjct: 263 INDVRKGKLGRYTLDFPDK 281
>gi|406577629|ref|ZP_11053229.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406588490|ref|ZP_11063094.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419815963|ref|ZP_14340365.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404459694|gb|EKA06021.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404464439|gb|EKA09979.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404467876|gb|EKA12933.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 IDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDDAVALKLALTGAIKDQ 199
>gi|417092810|ref|ZP_11957364.1| GTP1/OBG protein [Streptococcus suis R61]
gi|353532170|gb|EHC01844.1| GTP1/OBG protein [Streptococcus suis R61]
Length = 283
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAAKSLMKEKIERLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P LQ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 261 KDVRDGRLGTYTLDK 275
>gi|402312857|ref|ZP_10831780.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
gi|400367433|gb|EJP20449.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
Length = 279
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR P +T +P + + N+ RI++LN+ D+ + N WA+++ +QG + +
Sbjct: 24 VDIIIEMTDARAPEATRNPEIMELGSNKSRIIILNKADLSDESANNRWASHYKEQGYECM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + + G L + + ++ D + +G+ R VRA + G PNVGKS+LIN + R
Sbjct: 84 FMDSRKKNGVNVLIKAIENVSKDKRERDAKRGIKNRPVRAMVAGIPNVGKSTLINSVSGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
M +PGVT+ +W++ +E LD+PGI+ + D+ +A I + D+
Sbjct: 144 AMAKTGNKPGVTKGNQWIKLKGQIELLDTPGILWPKFEDENIGEMIAFIGSINDMIIDIR 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQA 233
++ L++ + P + L R++++ DG + K+A D +A
Sbjct: 204 ELGLELIKWFIKNKPEI----LTERFEME-DGDDENAVLIKIANLRGCTKKGNELDYDKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A + +FR GK G I+L+ P
Sbjct: 259 AGIFVNEFRSGKLGRITLQMP 279
>gi|343525032|ref|ZP_08761988.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343396904|gb|EGV09440.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 283
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSDVTKEWRRYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLALTGAIKDDLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+VA GI + Y ++ + +++ A + T + FR
Sbjct: 205 EVAIF-----------GINYFKEHYPKELRERFKQIDLKEEAPEIIMDMTQKLGFRDNYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 254 RFYQLFIKEIRDGKVGRYTLD 274
>gi|262282235|ref|ZP_06060003.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
gi|262261526|gb|EEY80224.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
Length = 283
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W TYF QG +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRLKEWQTYFEGQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 ALNSKEQSAVKKVTDAAKKLMADKLARQKGRGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ G + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELVGRYKQLDLSQEAPDIIMDMTPKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRFCLD 274
>gi|116629568|ref|YP_814740.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|238853073|ref|ZP_04643465.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282852053|ref|ZP_06261411.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311110788|ref|ZP_07712185.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|420147282|ref|ZP_14654558.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
gi|116095150|gb|ABJ60302.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus gasseri
ATCC 33323]
gi|238834321|gb|EEQ26566.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282556813|gb|EFB62417.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311065942|gb|EFQ46282.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|398401283|gb|EJN54785.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
Length = 279
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 1/253 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ Q + I++LN+ D+ W YF +G VI
Sbjct: 25 IDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIILNKSDLADPIQTKKWTRYFQDEGNFVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L ++ K K +KG +R I G PN GKS++INR++ R
Sbjct: 85 SMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNPMIRVAIAGIPNCGKSTIINRMVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + SDQ KLA C I +
Sbjct: 145 NAAIVGDKPGVTRGQSWLKTKTNVQILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++ L + +T +++ + + + D + + +L
Sbjct: 205 DVALFVIEFLKQNYKKDLTKFAQATNEELENMSNPDLLLAMTNKYGMRDDYDKFSLFMLQ 264
Query: 240 DFRKGKFGWISLE 252
RKGK G I+ +
Sbjct: 265 RLRKGKLGRITFD 277
>gi|225868571|ref|YP_002744519.1| GTPase protein [Streptococcus equi subsp. zooepidemicus]
gi|225701847|emb|CAW99305.1| putative GTPase protein [Streptococcus equi subsp. zooepidemicus]
Length = 284
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 132/254 (51%), Gaps = 4/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADSTHTKKWQQYYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINAKEQATVKRVTEAAKELMADKLRRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + + L R+K ID++ + + F D + +
Sbjct: 205 EVTIFGLNYFKKYYP---NRLLKRFKAIDLEADAPEIIMSLTRQLGFKEDYDRFYSLFIK 261
Query: 240 DFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 262 DIRDGRLGQYTLDQ 275
>gi|421277395|ref|ZP_15728215.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
gi|395876676|gb|EJG87752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 133/248 (53%), Gaps = 4/248 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ A W +F QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPALTKEWRQHFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K ++++ + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPEKLQERFKQMNLNDEAPEIIMNMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFG 247
+ R GK G
Sbjct: 262 EVRDGKLG 269
>gi|195978101|ref|YP_002123345.1| ribosomal biogenesis GTPase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974806|gb|ACG62332.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 284
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 132/254 (51%), Gaps = 4/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINAKEQATVKRVTEAAKELMADKLHRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + + L R+K ID++ + + F D + +
Sbjct: 205 EVTIFGLNYFKKYYP---NRLLKRFKAIDLEADAPEIIMSLTRQLGFKEDYDRFYSLFIK 261
Query: 240 DFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 262 DIRDGRLGQYTLDQ 275
>gi|386588114|ref|YP_006084515.1| GTP1/OBG protein [Streptococcus suis A7]
gi|354985275|gb|AER44173.1| GTP1/OBG protein [Streptococcus suis A7]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W +YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADPVCTKEWQSYFEGQGIRTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTDAAKSLMKEKIERLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P L+ R+K +D++ + + F D + +
Sbjct: 205 EVTIFGLDYFKANYP----ERLEERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L+R
Sbjct: 261 KDVRDGRLGTYTLDR 275
>gi|422848671|ref|ZP_16895347.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
gi|325689692|gb|EGD31696.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L SD +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMSDKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLDYFKEHYPEELTSRFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSIFVKDVRDGKLGRYCLD 274
>gi|419718995|ref|ZP_14246289.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
gi|383304864|gb|EIC96255.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
Length = 281
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 136/261 (52%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR P + +P + + ++ RI++LN+ D+ + N WA+++ +QG + +
Sbjct: 24 VDIIIEMTDARAPEAGRNPEITELGADKSRIIILNKADLANELANNRWASFYKEQGYECM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + + G L + + ++ + +G+ R VRA + G PNVGKS+LIN + R
Sbjct: 84 FMDSRKNNGVGVLIKAIENVSKKKRERDAKRGIKNRPVRAMVAGIPNVGKSTLINSVSGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
M +PGVT+ +W++ +E LD+PGI+ + D+ +A I + D+
Sbjct: 144 AMAKTGNKPGVTKGNQWIKLKGQIELLDTPGILWPKFEDERVGEMIAFIGSINDMIIDIR 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQA 233
++ L++ +L P V LQ R+ I DG + K+A D +A
Sbjct: 204 ELGLELIKWLLKNKPEV----LQERFDIK-DGDDENAVLIKIAKVRGCTKKGGEPDYDKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A ++ +FR GK G I+L+ P
Sbjct: 259 ATILVNEFRSGKLGRITLQMP 279
>gi|225870571|ref|YP_002746518.1| ribosomal biogenesis GTPase [Streptococcus equi subsp. equi 4047]
gi|225699975|emb|CAW93947.1| putative GTPase protein [Streptococcus equi subsp. equi 4047]
Length = 284
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 132/254 (51%), Gaps = 4/254 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINAKEQATVKRVTEAAKELMADKLRRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + + L R+K ID++ + + F D + +
Sbjct: 205 EVTIFGLNYFKKYYP---NRLLKRFKAIDLEADAPEIIMSLTRQLGFKEDYDRFYSLFIK 261
Query: 240 DFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 262 DIRDGRLGQYTLDQ 275
>gi|419766049|ref|ZP_14292267.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
gi|383354502|gb|EID32064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D ++R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQRERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|270292736|ref|ZP_06198947.1| GTP-binding protein [Streptococcus sp. M143]
gi|270278715|gb|EFA24561.1| GTP-binding protein [Streptococcus sp. M143]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A A+KLA+ I ++
Sbjct: 145 KIAVIGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDDAVALKLALTGAIKDQ 199
>gi|78043127|ref|YP_360259.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77995242|gb|ABB14141.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 276
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 16/261 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----QG 56
+DVV+E+RDARIPLS+ +P +++ N+ RI++ N++D+ AD K +G
Sbjct: 23 VDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL---ADVEKTEEILKKLPWPEG 79
Query: 57 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 116
+ G ++ + + + K KGL PR +R +VG PNVGKS++INR
Sbjct: 80 VYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPLRGMVVGIPNVGKSTVINR 139
Query: 117 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERS 176
LLKR + A +PGVTR ++W++ LE +D+PG++ ++ D +KL I +
Sbjct: 140 LLKRSVKTGA-KPGVTRGVQWIKLSDKLELMDTPGVLWPKLGDMEVGLKLGATGSISDEV 198
Query: 177 YDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ-----KLALHLFNGDTH 231
V +VA L+++L T NR+ ++ + + + L L D
Sbjct: 199 LPVIEVANWLLKILC---TYRKPEFFNRFNLNGSENLNEIYEKIGRRRGLFLRGEEIDYQ 255
Query: 232 QAAFRILTDFRKGKFGWISLE 252
+ A IL +FR+G G +L+
Sbjct: 256 KVALVILKEFRQGLLGKYTLD 276
>gi|417940352|ref|ZP_12583640.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
gi|343389233|gb|EGV01818.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
Length = 317
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 59 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 118
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 119 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 178
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 179 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 233
>gi|401683098|ref|ZP_10814987.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
gi|400183780|gb|EJO18031.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
Length = 283
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKNLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPEMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSIFVKDVRDGKLGRYCLD 274
>gi|407795754|ref|ZP_11142712.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
gi|407020095|gb|EKE32809.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
Length = 279
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ DAR PLS+ +P++ + + ++ +++V+ ++D+ W YF + +
Sbjct: 24 VDFVIELVDARAPLSSQNPMLQEEIQDKPKLVVMMKQDLADPGVTKEWIDYFDSTFSHAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ K++ ++ + + K+R+KG+ PR RA IVG PNVGKSSLINRL +
Sbjct: 84 AVDVNNPKNIQKIAEASRQITEEKLEKQRAKGVNPRNPRAMIVGIPNVGKSSLINRLAHK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ + E LD+PGI+ + ++ +LA I ++
Sbjct: 144 KKAETGDKPGVTKKQQWIKVKNEFELLDTPGILWPKFEEEVTGFRLAAIGTIKDQVLPQD 203
Query: 181 DVAA-ILVQMLARIPTVGITALQNRYKI----DMDGTCGKTFVQKLALHLFN-GDTHQAA 234
+VA IL + R P L+ R+ D+ K ++ AL D + A
Sbjct: 204 EVAIFILNHLKERYP----EQLEERFGFSDFEDVVEAFDKIGKKRGALEAGGVVDYEKVA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
I+ D R + G IS ERP
Sbjct: 260 EIIIQDLRSNRIGRISFERP 279
>gi|392428770|ref|YP_006469781.1| GTP-binding protein [Streptococcus intermedius JTH08]
gi|391757916|dbj|BAM23533.1| GTP-binding protein [Streptococcus intermedius JTH08]
Length = 295
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+P S+ +P++ + +G++ ++LVLN+ D+ W YF QG K +
Sbjct: 37 VDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKADLADAHLTKEWRRYFENQGIKTL 96
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 97 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 156
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KL++ I + DV
Sbjct: 157 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLSLTGAIKD---DVL 213
Query: 181 DVAAILVQMLARIPTVGITALQNRYK 206
+ + + + T LQ R+K
Sbjct: 214 PMDEVTIFGINYFKEHYPTELQERFK 239
>gi|419776422|ref|ZP_14302344.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
gi|383845833|gb|EID83233.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
Length = 283
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+P S+ +P++ + +G++ ++LVLN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKADLADAHLTKEWRRYFENQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KL++ I + DV
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLSLTGAIKD---DVL 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYK 206
+ + + + T LQ R+K
Sbjct: 202 PMDEVTIFGINYFKEHYPTELQERFK 227
>gi|417676893|ref|ZP_12326303.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|418155144|ref|ZP_12791875.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|418225544|ref|ZP_12852173.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
gi|332075089|gb|EGI85560.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|353823436|gb|EHE03611.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|353882852|gb|EHE62663.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V+ + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVMILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|401683536|ref|ZP_10815422.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
BS35b]
gi|400187614|gb|EJO21808.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
BS35b]
Length = 273
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 15 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 75 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 135 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 189
>gi|427439148|ref|ZP_18923890.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
gi|425788526|dbj|GAC44678.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
Length = 277
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 131/255 (51%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP+S+ +P+++ + ++ +L+L + D+ + W YF K G +
Sbjct: 15 VDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTKADLADPQETQRWLEYFRKNGDHAV 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + + +A+ D S+G+ +++ +G PNVGKS+L+N L+ +
Sbjct: 75 ALNSKEPSTEKIILKHTRAILVDKLENWESRGIKKTEIKSMCIGIPNVGKSTLLNHLVNK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W++ + L LD+PGI+ + DQ+ KLA I + Y
Sbjct: 135 KVAITGDRPGVTKKQQWLKSRQGLYLLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYAND 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV---QKLALHLFNGDTHQAAFRI 237
DVA +Q+ + G+ + D D + + QKL + D +A+ RI
Sbjct: 195 DVALFGLQIFSDKYRNGLMERYHLTDEDFDQPLPELLLLITQKLGMR---DDYDRASQRI 251
Query: 238 LTDFRKGKFGWISLE 252
L D RKGK G +L+
Sbjct: 252 LLDARKGKLGRFNLD 266
>gi|228476732|ref|ZP_04061398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
gi|228251603|gb|EEK10704.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
Length = 284
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T L+ R+K I+++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERLEERFKGIELEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|422858458|ref|ZP_16905108.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
gi|327460344|gb|EGF06681.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGISTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|306825208|ref|ZP_07458550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432644|gb|EFM35618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 301
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 43 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 102
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 103 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 162
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 163 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 217
>gi|270290221|ref|ZP_06196446.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
gi|270281002|gb|EFA26835.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
Length = 287
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 132/255 (51%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV E+ DARIP+S+ +P+++ + ++ +L+L + D+ + W YF K G +
Sbjct: 25 VDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTKADLADPQETQRWLEYFRKNGDHAV 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + + +A+ ++ S+G+ +++ +G PNVGKS+L+N L+ +
Sbjct: 85 ALNSKEPSTEKIILKHTRAILANKLENWESRGIKKTEIKSMCIGIPNVGKSTLLNHLVNK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ +W++ + L LD+PGI+ + DQ+ KLA I + Y
Sbjct: 145 KVAITGDRPGVTKKQQWLKSRQGLYLLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYAND 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV---QKLALHLFNGDTHQAAFRI 237
DVA +Q+ + G+ + D D + + QKL + D +A+ RI
Sbjct: 205 DVALFGLQIFSEKYRNGLIERYHLTDEDFDQPLPELLLLITQKLGMR---DDYDRASQRI 261
Query: 238 LTDFRKGKFGWISLE 252
L D RKGK G +L+
Sbjct: 262 LLDARKGKLGRFNLD 276
>gi|373452163|ref|ZP_09544081.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp.
3_1_31]
gi|371967595|gb|EHO85066.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp.
3_1_31]
Length = 286
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ + + R+++L+++D A AW + T V+
Sbjct: 29 VDLVIELRDARIPNASKNPMIEELIQQKPRLIILSKKDKADAAITKAWIQTLSNASTMVL 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ T K+ + + L + +G+ PRA+RA +VG PNVGKS+ IN++ K+
Sbjct: 89 ALDIITENITPKIVKAVQTLMQAKIERMIRRGMKPRAMRAMVVGVPNVGKSTFINKISKK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ L+W + KDLE LD+PG++ + D+ I LAI I + +
Sbjct: 149 KIAVTGDRPGVTKSLQWSKINKDLELLDTPGVLWPKFEDERVGILLAITGAIRDEILPLE 208
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLA-----LHLFNGDTHQA 233
++AA ++ L + AL RY I C + + ++A + D +
Sbjct: 209 EIAAWAMRYLLQ---HHAQALTKRYDI---ALCSDPYEMLNRIAQKRGYMRNHEIDEKRT 262
Query: 234 AFRILTDFRKGKFGWISLERP 254
L + R K G IS E P
Sbjct: 263 IETFLRELRDDKLGPISWEVP 283
>gi|414158502|ref|ZP_11414796.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
gi|410871047|gb|EKS19004.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIALVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|414563982|ref|YP_006042943.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847047|gb|AEJ25259.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 284
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 133/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINAKEQATVKRVTEAAKELMADKLRRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V + + P L R+K ID++ + + F D + +
Sbjct: 205 EVTIFGLNYFKKHYP----NRLLKRFKAIDLEADAPEIIMSLTRQLGFKEDYDRFYSLFI 260
Query: 239 TDFRKGKFGWISLER 253
D R G+ G +L++
Sbjct: 261 KDIRDGRLGQYTLDQ 275
>gi|400290291|ref|ZP_10792318.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921082|gb|EJN93899.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 12/258 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+P S+ +P++ + +G++ R+++LN+ D+ + W YF QG +
Sbjct: 25 VDFVTILVDARLPFSSQNPMLTKIVGDKPRLMILNKADLADGSRTKEWQDYFESQGITAL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K+ AK L + K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSAVKKIGEAAKKLMASKLSKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I + +
Sbjct: 145 KVAAVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVGLKLALTGAIKDNLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAF 235
+V L P L+ R+K ID++ + + QKL F D
Sbjct: 205 EVTIFGLNYFKENYP----ERLKERFKGIDLNEEAPEIIMSLTQKLG---FRDDYDHFYS 257
Query: 236 RILTDFRKGKFGWISLER 253
+ + R GK G +L++
Sbjct: 258 LFVKEVRDGKLGRYTLDK 275
>gi|422860127|ref|ZP_16906771.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
gi|327470025|gb|EGF15489.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDVTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|319939094|ref|ZP_08013458.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319812144|gb|EFW08410.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 137/257 (53%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++L+LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKGDLADSDLTKEWRKYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ ++LE LD+PGI+ + D+ A+KLA+ I + D+
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNRNLEILDTPGILWPKFEDEKVALKLALTGAIKD---DLL 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAFR 236
+ + + + LQ R+K +D++ + + QKL D + +R
Sbjct: 202 PMDEVTIFGINYFKEHYPKELQERFKQMDLEEEAPEIIMDMTQKLGFR----DDYDRFYR 257
Query: 237 I-LTDFRKGKFGWISLE 252
+ + D R GK G +L+
Sbjct: 258 LFIKDIRDGKLGRYTLD 274
>gi|322376563|ref|ZP_08051056.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
gi|321282370|gb|EFX59377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKITRQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|418975316|ref|ZP_13523225.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
gi|383348687|gb|EID26646.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
Length = 330
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 72 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 131
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 132 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 191
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 192 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 246
>gi|409349423|ref|ZP_11232890.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
gi|407878170|emb|CCK84948.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIPLS+ +P++++ +GN+ I++LN+ D+ W T V+
Sbjct: 25 IDVVVEILDARIPLSSRNPMIEELVGNKPHIIILNKADLADPVMTKLWQKKLQGPRTLVM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L L K +S+ K +G VR +VG PN GKS++INRL+
Sbjct: 85 AMDAQHNTNVQALVTLIKKASSEKVKKLEERGASNPIVRIALVGVPNCGKSTIINRLVGH 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ W++ ++ LD+PGI+ + DQ KLA I + +
Sbjct: 145 NVAITGDKPGVTKGQAWLKTNYGIQILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++++L + + N K + + LAL NG D + + +
Sbjct: 205 DVALFVIRLLKQYYPAYLAKFANCSKEKIAAISDTDLL--LALTQNNGMRDDYDRFSLFM 262
Query: 238 LTDFRKGKFGWISLER 253
L RKGK G I+L+R
Sbjct: 263 LQRLRKGKLGRITLDR 278
>gi|418962640|ref|ZP_13514494.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383345175|gb|EID23308.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 137/257 (53%), Gaps = 12/257 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G + ++L+LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKGDLADSDLTKEWRRYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ ++LE LD+PGI+ + D+ A+KLA+ I + D+
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNRNLEILDTPGILWPKFEDEKVALKLALTGAIKD---DLL 201
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFV---QKLALHLFNGDTHQAAFR 236
+ + + + LQ R+K +D++ + + QKL D + +R
Sbjct: 202 PMDEVTIFGINYFKEHYPKELQERFKQMDLEEEAPEIIMDMTQKLGFR----DDYDRFYR 257
Query: 237 I-LTDFRKGKFGWISLE 252
+ + D R GK G +L+
Sbjct: 258 LFIKDIRDGKLGRYTLD 274
>gi|149006185|ref|ZP_01829897.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194398607|ref|YP_002037767.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae G54]
gi|307127248|ref|YP_003879279.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|417686456|ref|ZP_12335734.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|417698436|ref|ZP_12347608.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|418096244|ref|ZP_12733358.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|418121196|ref|ZP_12758142.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|418131970|ref|ZP_12768845.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|418148561|ref|ZP_12785326.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|418159876|ref|ZP_12796575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|419442580|ref|ZP_13982609.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|419453088|ref|ZP_13993061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|419466560|ref|ZP_14006443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|419491047|ref|ZP_14030787.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|419506076|ref|ZP_14045737.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|419512513|ref|ZP_14052147.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|419516781|ref|ZP_14056399.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|419521124|ref|ZP_14060719.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|419532246|ref|ZP_14071762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|421211230|ref|ZP_15668213.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|421227359|ref|ZP_15684064.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|421238652|ref|ZP_15695219.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|421245048|ref|ZP_15701548.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|421283311|ref|ZP_15734098.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
gi|147761962|gb|EDK68924.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194358274|gb|ACF56722.1| GTP-binding protein [Streptococcus pneumoniae G54]
gi|306484310|gb|ADM91179.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|332076293|gb|EGI86759.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|332200481|gb|EGJ14553.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|353770156|gb|EHD50671.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|353794023|gb|EHD74382.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|353807636|gb|EHD87905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|353813236|gb|EHD93469.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|353821609|gb|EHE01785.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|379538424|gb|EHZ03604.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|379544683|gb|EHZ09827.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|379552928|gb|EHZ18016.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|379594626|gb|EHZ59436.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|379606030|gb|EHZ70779.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|379607990|gb|EHZ72736.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|379626797|gb|EHZ91413.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|379636983|gb|EIA01541.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|379640784|gb|EIA05323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|395573188|gb|EJG33779.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|395595527|gb|EJG55758.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|395601915|gb|EJG62060.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|395608890|gb|EJG68981.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|395881274|gb|EJG92323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|168577175|ref|ZP_02722990.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|419471085|ref|ZP_14010944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|419503941|ref|ZP_14043610.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
gi|183577218|gb|EDT97746.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|379545801|gb|EHZ10940.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|379606618|gb|EHZ71365.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|408410159|ref|ZP_11181400.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
gi|407875678|emb|CCK83206.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 5/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIPLS+ +P++++ +GN+ I++LN+ D+ W T V+
Sbjct: 25 IDVVVEILDARIPLSSRNPMIEELVGNKPHIIILNKADLADPVMTKLWQKKLQGPRTLVM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L L K +S+ K +G VR +VG PN GKS++INRL+
Sbjct: 85 AMDAQHNTNVQALVTLIKKASSEKVKKLEERGASNPIVRIALVGVPNCGKSTIINRLVGH 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ W++ ++ LD+PGI+ + DQ KLA I + +
Sbjct: 145 NVAITGDKPGVTKGQAWLKTNYGIQILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA ++++L + + N K + + LAL NG D + + +
Sbjct: 205 DVALFVIRLLKQYYPAYLAKFANCSKEKIAAISDTDLL--LALTQNNGMRDDYDRFSLFM 262
Query: 238 LTDFRKGKFGWISLER 253
L RKGK G I+L+R
Sbjct: 263 LQRLRKGKLGRITLDR 278
>gi|404483942|ref|ZP_11019157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
gi|404342954|gb|EJZ69323.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
Length = 279
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR P +T +P + + N+ RI++LN+ D+ + N WA+++ +QG + +
Sbjct: 24 VDIIIEMTDARAPEATRNPEIMELGSNKSRIIILNKADLSDESANNRWASHYKEQGYECM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + + G L + + ++ + + +G+ R VRA + G PNVGKS+LIN + R
Sbjct: 84 FMDSRKKNGVNALIKAIENVSKEKRERDAKRGIKNRPVRAMVAGIPNVGKSTLINSVSGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
M +PGVT+ +W++ +E LD+PGI+ + D+ +A I + D+
Sbjct: 144 AMAKTGNKPGVTKGNQWIKLKGQIELLDTPGILWPKFEDENIGEMIAFIGSINDMIIDIR 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA------LHLFNGDTHQA 233
++ L++ + P + L R++++ DG + K+A D +A
Sbjct: 204 ELGLELIKWFIKNRPEI----LTERFEME-DGDDENAVLIKIANLRGCTKKGNELDYDKA 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
A + +FR GK G ++L+ P
Sbjct: 259 ASIFVNEFRSGKLGRVTLQMP 279
>gi|421275900|ref|ZP_15726727.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA52612]
gi|395872320|gb|EJG83419.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA52612]
Length = 273
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 15 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 75 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 135 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 189
>gi|410476458|ref|YP_006743217.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|419482192|ref|ZP_14021984.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|421206625|ref|ZP_15663680.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|421229801|ref|ZP_15686469.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|421292077|ref|ZP_15742813.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|421311988|ref|ZP_15762592.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|444388674|ref|ZP_21186651.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444389726|ref|ZP_21187641.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444392456|ref|ZP_21190180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444395264|ref|ZP_21192810.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444397608|ref|ZP_21195091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444403041|ref|ZP_21200162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444405848|ref|ZP_21202693.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444407230|ref|ZP_21203897.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444417011|ref|ZP_21213075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444419475|ref|ZP_21215335.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
gi|379580328|gb|EHZ45221.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|395575422|gb|EJG35990.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|395595361|gb|EJG55593.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|395893075|gb|EJH04064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|395910729|gb|EJH21599.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|406369403|gb|AFS43093.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|444248554|gb|ELU55059.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444256189|gb|ELU62527.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444258583|gb|ELU64905.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444260265|gb|ELU66573.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444263351|gb|ELU69533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444265368|gb|ELU71381.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444270826|gb|ELU76577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444272140|gb|ELU77876.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444284668|gb|ELU89789.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444286762|gb|ELU91723.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|417849129|ref|ZP_12495055.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
gi|339457126|gb|EGP69706.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|169834320|ref|YP_001694595.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Hungary19A-6]
gi|168996822|gb|ACA37434.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|15901020|ref|NP_345624.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae TIGR4]
gi|111658305|ref|ZP_01408995.1| hypothetical protein SpneT_02000534 [Streptococcus pneumoniae
TIGR4]
gi|148994504|ref|ZP_01823684.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|168483217|ref|ZP_02708169.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|168488984|ref|ZP_02713183.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|168492509|ref|ZP_02716652.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|168493081|ref|ZP_02717224.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|221231869|ref|YP_002511021.1| GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225854631|ref|YP_002736143.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae JJA]
gi|225856833|ref|YP_002738344.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae P1031]
gi|225858943|ref|YP_002740453.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae 70585]
gi|383938074|ref|ZP_09991298.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|387626472|ref|YP_006062647.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|415698636|ref|ZP_11457250.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|415749531|ref|ZP_11477475.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|415752216|ref|ZP_11479327.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|417679121|ref|ZP_12328518.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|417694074|ref|ZP_12343262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|417696351|ref|ZP_12345530.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|418073927|ref|ZP_12711184.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|418078628|ref|ZP_12715851.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|418080600|ref|ZP_12717812.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|418089532|ref|ZP_12726689.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|418091790|ref|ZP_12728932.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|418098507|ref|ZP_12735606.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|418105220|ref|ZP_12742278.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|418107579|ref|ZP_12744617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|418110134|ref|ZP_12747157.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|418112490|ref|ZP_12749492.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|418114707|ref|ZP_12751695.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|418116873|ref|ZP_12753844.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|418123415|ref|ZP_12760348.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|418125795|ref|ZP_12762703.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|418128000|ref|ZP_12764896.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|418130321|ref|ZP_12767205.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|418135202|ref|ZP_12772059.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|418137177|ref|ZP_12774019.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|418162208|ref|ZP_12798894.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|418169180|ref|ZP_12805823.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|418173517|ref|ZP_12810130.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|418175969|ref|ZP_12812564.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|418178176|ref|ZP_12814760.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|418182650|ref|ZP_12819211.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|418187165|ref|ZP_12823693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|418191711|ref|ZP_12828215.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|418193770|ref|ZP_12830262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|418214344|ref|ZP_12841079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|418216589|ref|ZP_12843312.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218899|ref|ZP_12845566.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|418221214|ref|ZP_12847868.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|418229903|ref|ZP_12856507.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|418234359|ref|ZP_12860938.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|418238721|ref|ZP_12865276.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418972904|ref|ZP_13520955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|419422948|ref|ZP_13963163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|419431512|ref|ZP_13971653.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|419434262|ref|ZP_13974379.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|419440240|ref|ZP_13980292.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|419459991|ref|ZP_13999922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|419462316|ref|ZP_14002223.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|419464642|ref|ZP_14004534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|419469002|ref|ZP_14008873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|419473203|ref|ZP_14013054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|419477817|ref|ZP_14017642.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|419483974|ref|ZP_14023750.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|419488131|ref|ZP_14027884.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|419493154|ref|ZP_14032881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|419497324|ref|ZP_14037033.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|419508232|ref|ZP_14047885.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|419525897|ref|ZP_14065459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|421220306|ref|ZP_15677151.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|421222642|ref|ZP_15679429.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|421231901|ref|ZP_15688545.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|421243084|ref|ZP_15699603.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|421247419|ref|ZP_15703905.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|421270518|ref|ZP_15721374.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|421272734|ref|ZP_15723577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|421278937|ref|ZP_15729745.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|421281121|ref|ZP_15731919.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|421294440|ref|ZP_15745163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|421298596|ref|ZP_15749284.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|421301024|ref|ZP_15751694.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|421309576|ref|ZP_15760203.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444409972|ref|ZP_21206536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444413375|ref|ZP_21209691.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444423525|ref|ZP_21219124.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
gi|14972633|gb|AAK75264.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
gi|147927174|gb|EDK78210.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|172043516|gb|EDT51562.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|183572498|gb|EDT93026.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|183573327|gb|EDT93855.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|183576748|gb|EDT97276.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|220674329|emb|CAR68875.1| putative GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225721097|gb|ACO16951.1| GTP-binding protein [Streptococcus pneumoniae 70585]
gi|225723566|gb|ACO19419.1| GTP-binding protein [Streptococcus pneumoniae JJA]
gi|225724745|gb|ACO20597.1| GTP-binding protein [Streptococcus pneumoniae P1031]
gi|301794257|emb|CBW36678.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|332073500|gb|EGI83979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|332201626|gb|EGJ15696.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|332203011|gb|EGJ17079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|353747819|gb|EHD28475.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|353750336|gb|EHD30977.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|353753140|gb|EHD33764.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|353762218|gb|EHD42781.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|353763890|gb|EHD44440.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|353769867|gb|EHD50383.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|353777285|gb|EHD57758.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|353779762|gb|EHD60226.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|353782337|gb|EHD62771.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|353784356|gb|EHD64777.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|353786220|gb|EHD66633.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|353789850|gb|EHD70242.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|353796576|gb|EHD76915.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|353796761|gb|EHD77099.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|353800461|gb|EHD80775.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|353803613|gb|EHD83905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|353828251|gb|EHE08394.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|353834365|gb|EHE14466.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|353838334|gb|EHE18412.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|353841793|gb|EHE21846.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|353844950|gb|EHE24993.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|353850887|gb|EHE30891.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|353852395|gb|EHE32384.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|353857612|gb|EHE37575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|353859750|gb|EHE39700.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|353871627|gb|EHE51498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|353872181|gb|EHE52047.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875554|gb|EHE55406.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|353876137|gb|EHE55987.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|353888325|gb|EHE68100.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|353888604|gb|EHE68378.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|353894471|gb|EHE74213.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353901804|gb|EHE77336.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|353902439|gb|EHE77969.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|379532095|gb|EHY97326.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|379532147|gb|EHY97377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|379537676|gb|EHZ02858.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|379547105|gb|EHZ12243.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|379552710|gb|EHZ17799.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|379558157|gb|EHZ23193.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|379567199|gb|EHZ32186.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|379575646|gb|EHZ40576.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|379580007|gb|EHZ44903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|379583485|gb|EHZ48362.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|379587474|gb|EHZ52322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|379590246|gb|EHZ55084.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|379595192|gb|EHZ60001.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|379600793|gb|EHZ65572.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|379611950|gb|EHZ76672.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|379630285|gb|EHZ94873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|381309912|gb|EIC50745.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|381316847|gb|EIC57589.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|381317825|gb|EIC58550.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|383350883|gb|EID28730.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383715045|gb|EID71027.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|395587682|gb|EJG48026.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|395587844|gb|EJG48184.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|395595930|gb|EJG56156.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|395608672|gb|EJG68764.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|395614240|gb|EJG74261.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|395868313|gb|EJG79431.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|395875628|gb|EJG86708.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|395880370|gb|EJG91423.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|395882282|gb|EJG93329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|395894730|gb|EJH05710.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|395898584|gb|EJH09528.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|395902552|gb|EJH13485.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|395910997|gb|EJH21866.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444273534|gb|ELU79207.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444278463|gb|ELU83910.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444286782|gb|ELU91742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|336395589|ref|ZP_08576988.1| putative GTP-binding protein [Lactobacillus farciminis KCTC 3681]
Length = 284
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 137/259 (52%), Gaps = 9/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR+P S+ +P+++Q + +K I++LN+ D+ W F ++GT I
Sbjct: 24 VDIVLEIVDARLPFSSRNPVLEQIIDQKKHIIILNKSDLADPKITADWKLNFEQEGTNSI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G K+ + ++ S+ + + G+ ++A +G PNVGKS+++NRL+ +
Sbjct: 84 EIDAKHTKGMNKIKSMIRSELSEKIQRYENNGVQNYRIKAMCIGIPNVGKSTILNRLVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ W++ ++ LD+PGI+ +I D +KLA+ I ++ Y
Sbjct: 144 NVAVTGNKPGVTKNQNWLKTNIGIDLLDTPGILWPKIDDPKVGMKLALSGAIKDKIYAPD 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-----FNGDTHQAAF 235
DVA + L + T + LQ Y + T +L ++L + D +A+
Sbjct: 204 DVA---IYALNFMETHYMDQLQESYGLTNADIFNHT-TPELLMNLTKKFGYKEDYDRASR 259
Query: 236 RILTDFRKGKFGWISLERP 254
RI+ D RK K G ++ + P
Sbjct: 260 RIIDDVRKLKLGRLTFDIP 278
>gi|329117496|ref|ZP_08246213.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
gi|326907901|gb|EGE54815.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
Length = 284
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ + W ++ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADKSMTKEWRQFYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKDLMADKIQRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQKVGLKLALTGAIKDQ 199
>gi|444400229|ref|ZP_21197643.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
gi|444266957|gb|ELU72883.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
Length = 281
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|15903087|ref|NP_358637.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae R6]
gi|116515446|ref|YP_816493.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae D39]
gi|421266169|ref|ZP_15717051.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
gi|15458663|gb|AAK99847.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076022|gb|ABJ53742.1| GTP-binding protein [Streptococcus pneumoniae D39]
gi|183217365|gb|ACC59284.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae]
gi|395867731|gb|EJG78852.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|374287713|ref|YP_005034798.1| putative GTPase [Bacteriovorax marinus SJ]
gi|301166254|emb|CBW25829.1| putative GTPase [Bacteriovorax marinus SJ]
Length = 324
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 13/263 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+RDARIPL + + + + LGN+ R++VLN+ ++ W +F G I
Sbjct: 65 VDIVLELRDARIPLLSGNEDLKKVLGNKCRLIVLNKVNLCDPEKLADWKKWFDDNGEHHI 124
Query: 61 FSNGQLGMGTMKL-SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
F N L +KL + ++ + + G R R +VG PN GKS+LIN L
Sbjct: 125 FIN-VLDRNAVKLITEKSREIVVANRIASGGSGEKTRKFRMMMVGLPNTGKSTLINSLGG 183
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R+ + +PG+T+ +W++ D+E LD+PGI+P +I + + L I ++
Sbjct: 184 RKAAKSGDKPGLTQSQQWIKLAGDIELLDTPGIMPRKIETREEGMWLCATHAIKDQILGQ 243
Query: 180 ADVAAILVQMLAR-IPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAAF-- 235
+VA +V+ L + P L+ +Y ID T +++++L F A F
Sbjct: 244 EEVACFVVEYLMKYFP----KNLEEKYNIDKLATSSGEVLEQISLSRGFIKKKGVADFDR 299
Query: 236 ---RILTDFRKGKFGWISLERPP 255
+L+DFRKG+ G I+ E P
Sbjct: 300 TFATVLSDFRKGELGLITFENIP 322
>gi|76787382|ref|YP_329729.1| ribosomal biogenesis GTPase [Streptococcus agalactiae A909]
gi|77407003|ref|ZP_00784017.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|406709474|ref|YP_006764200.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
gi|417005257|ref|ZP_11943850.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|424049454|ref|ZP_17787005.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|76562439|gb|ABA45023.1| GTP-binding protein [Streptococcus agalactiae A909]
gi|77174389|gb|EAO77244.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|341577070|gb|EGS27478.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|389649125|gb|EIM70610.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|406650359|gb|AFS45760.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W ++ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADPIRTKEWRDFYESQGLKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ +AK L SD K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDIAKILMSDKIAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + L T L+ R+K I+++ + T QKL + D +
Sbjct: 205 EVT---IFGLNYFKTYYPDRLKERFKSINLEDEAPEIIMTLTQKLG---YRDDYDRFYNL 258
Query: 237 ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 259 FVKEVRDGKLGRYTLD 274
>gi|307708681|ref|ZP_07645144.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
gi|307615255|gb|EFN94465.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|444383788|ref|ZP_21181969.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
gi|444386338|ref|ZP_21184398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444247922|gb|ELU54447.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444248349|gb|ELU54859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
Length = 289
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 31 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 90
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 91 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 150
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 151 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 205
>gi|333905011|ref|YP_004478882.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|333120276|gb|AEF25210.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|456370989|gb|EMF49885.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02109]
gi|457095374|gb|EMG25869.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02083]
Length = 284
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ + W ++ KQG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADKSMTKEWRQFYEKQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKDLMADKIQRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + DQ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDQKVGLKLALTGAIKDQ 199
>gi|253681828|ref|ZP_04862625.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
gi|253561540|gb|EES90992.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
Length = 280
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARI S+ +P +D N+ RI++LN+ D+ W + + +V
Sbjct: 24 VDIVIEIRDARIVKSSANPDIDDICKNKPRIILLNKSDLSEEKVTKEWIKKLSNEFIRVA 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G + + L + + + R+KG++ RA +VG PNVGKSS IN++ +
Sbjct: 84 NVNCVTGKGLNSIKPMINDLLKEKHDRLRAKGVVNITTRAMVVGIPNVGKSSFINKMARN 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ +E LD+PG++ + D+ + LA I + ++
Sbjct: 144 NTAKVGDKPGVTKNKQWIKTKMGIELLDTPGVLWPKFQDEQVGLNLAFTGAIKD---EIM 200
Query: 181 DVAAILVQMLARIPTVGITALQNRYKID------MDGTCGKTFVQKLALHLFNGDTHQAA 234
D+ + +++ ++ L RYK++ ++ + + N D ++ +
Sbjct: 201 DIETLAFKLIEKLQEEYPERLMERYKLNSLSEDTLENMNNIGRKRGAVISGGNIDYNRVS 260
Query: 235 FRILTDFRKGKFGWISLERP 254
IL + R GK G ISLERP
Sbjct: 261 VLILDELRGGKLGPISLERP 280
>gi|77408070|ref|ZP_00784818.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|410594536|ref|YP_006951263.1| ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
gi|421147340|ref|ZP_15607030.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|421532850|ref|ZP_15979194.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|77173335|gb|EAO76456.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|401686018|gb|EJS82008.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|403641862|gb|EJZ02773.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|410518175|gb|AFV72319.1| Ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
Length = 283
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W ++ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADPIRTKEWRDFYESQGLKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ +AK L SD K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDIAKILMSDKIAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + L T L+ R+K I+++ + T QKL + D +
Sbjct: 205 EVT---IFGLNYFKTYYPDRLKERFKSINLEDESPEIIMTLTQKLG---YRDDYDRFYNL 258
Query: 237 ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 259 FVKEVRDGKLGRYTLD 274
>gi|423068503|ref|ZP_17057291.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
gi|355366758|gb|EHG14475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSDVTKEWRRYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLALTGAIKDDLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V GI + Y ++ + +++ A + T + FR
Sbjct: 205 EVTIF-----------GINYFKEHYPKELRERFKQIDLKEEAPEIIMDMTQKLGFRDNYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 254 RFYQLFIKEIRDGKVGRYTLD 274
>gi|418976576|ref|ZP_13524444.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
gi|383351328|gb|EID29134.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|422870916|ref|ZP_16917409.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
gi|328946297|gb|EGG40441.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|160915180|ref|ZP_02077393.1| hypothetical protein EUBDOL_01188 [Eubacterium dolichum DSM 3991]
gi|158432979|gb|EDP11268.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium dolichum
DSM 3991]
Length = 292
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 20/265 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV- 59
+D VIE+RDARIP ++ +P++D+ + R+++L++ D + W + + + TKV
Sbjct: 32 VDFVIELRDARIPNASRNPMLDELCKQKPRLIILSKRDKAQASYTKQWIAHLSNETTKVL 91
Query: 60 ---IFSNGQLGMGTMKLSRLAKALASDVNVKRR-SKGLLPRAVRAGIVGYPNVGKSSLIN 115
I + M +L KA ++R +G+ PRA+RA +VG PNVGKS+ IN
Sbjct: 92 ALDILKDSVTQMVVDASQQLMKA-----KIERMIRRGIRPRAMRAMVVGVPNVGKSTFIN 146
Query: 116 RLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
R+ K+++ RPGVT+ L+W R KDLE LD+PG++ + D+ + LA+ I +
Sbjct: 147 RISKKKIATTGDRPGVTKALQWSRVNKDLELLDTPGVLWPKFEDEQVGLLLAVTGAIRDE 206
Query: 176 SYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH---LFNG---D 229
+ ++A ++ L + AL RY I + + T ++ +A L NG D
Sbjct: 207 VLPIDEIALWAMRWLLENHS---EALTKRYDIPL-KSDPYTMLEAIAWKRGFLKNGQEVD 262
Query: 230 THQAAFRILTDFRKGKFGWISLERP 254
+ L + R + G I+ E P
Sbjct: 263 WKRTIETFLREIRDDRLGSITWEIP 287
>gi|417924417|ref|ZP_12567859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
gi|342835941|gb|EGU70168.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAITKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|293400515|ref|ZP_06644660.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305541|gb|EFE46785.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 272
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 13/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ + + R+++L+++D A AW + T V+
Sbjct: 15 VDLVIELRDARIPNASKNPMIEELIQQKPRLIILSKKDKADAAITKAWIQTLSNASTMVL 74
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ T K+ + + L + +G+ PRA+RA +VG PNVGKS+ IN++ K+
Sbjct: 75 ALDIITENITPKIVKAVQTLMLAKIERMIRRGMKPRAMRAMVVGVPNVGKSTFINKISKK 134
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVT+ L+W + KDLE LD+PG++ + D+ I LAI I + +
Sbjct: 135 KIAVTGDRPGVTKSLQWSKINKDLELLDTPGVLWPKFEDERVGILLAITGAIRDEILPLE 194
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLA-----LHLFNGDTHQA 233
++AA ++ L + AL RY I C + + ++A + D +
Sbjct: 195 EIAAWAMRYLLQ---HHAQALTKRYDI---ALCSDPYEMLNRIAQKRGYMRNHEIDEKRT 248
Query: 234 AFRILTDFRKGKFGWISLERP 254
L + R K G IS E P
Sbjct: 249 IETFLRELRDDKLGPISWEVP 269
>gi|422854280|ref|ZP_16900944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
gi|325696516|gb|EGD38406.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 133/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILV---------QMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTH 231
+V + +++AR + ++ +DM QKL F D
Sbjct: 205 EVTIFGLNYFKKHYPEELIARFKQLDLSQEAPDMIMDM--------TQKLG---FRDDYD 253
Query: 232 QAAFRILTDFRKGKFGWISLE 252
+ + D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|289167906|ref|YP_003446175.1| GTP-binding protein [Streptococcus mitis B6]
gi|288907473|emb|CBJ22310.1| GTP-binding protein [Streptococcus mitis B6]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|323351560|ref|ZP_08087214.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
gi|322122046|gb|EFX93772.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 133/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILV---------QMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTH 231
+V + +++AR + ++ +DM QKL F D
Sbjct: 205 EVTIFGLNYFKEHYPEELIARFKQLDLSQEAPDMIMDM--------TQKLG---FRDDYD 253
Query: 232 QAAFRILTDFRKGKFGWISLE 252
+ + D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|444414111|ref|ZP_21210415.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
gi|444283189|gb|ELU88395.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|418967252|ref|ZP_13518922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
gi|383344786|gb|EID22938.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAITKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|419782252|ref|ZP_14308061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|421488624|ref|ZP_15936012.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
gi|383183356|gb|EIC75893.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|400367841|gb|EJP20856.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|315652840|ref|ZP_07905814.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315485042|gb|EFU75450.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 281
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 135/260 (51%), Gaps = 10/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+ DAR P + +P + + ++ RI++LN+ D+ + N WA+++ +QG + +
Sbjct: 24 VDIIIEMTDARAPEAGRNPEIMELGADKSRIIILNKADLANELANNRWASFYKEQGYECM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
F + + G L + ++ + +G+ R VRA + G PNVGKS+LIN + R
Sbjct: 84 FMDSRKNNGVGVLIKAIDNVSKKKRERDAKRGIKNRPVRAMVAGIPNVGKSTLINSVSGR 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
M +PGVT+ +W++ +E LD+PGI+ + D+ +A I + D+
Sbjct: 144 AMAKTGNKPGVTKGNQWIKLKGQIELLDTPGILWPKFEDERVGEMIAFIGSINDMIIDIR 203
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQ--KLALHLFNG---DTHQAA 234
++ L++ +L P V LQ R+ I D ++ K+ G D +AA
Sbjct: 204 ELGLELIKWLLKNKPEV----LQERFDIKDDDDENAVLIKIAKVRGCTKKGGEPDYDKAA 259
Query: 235 FRILTDFRKGKFGWISLERP 254
++ +FR GK G I+L+ P
Sbjct: 260 TILVNEFRSGKLGRITLQMP 279
>gi|251782422|ref|YP_002996724.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391051|dbj|BAH81510.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 282
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 104/175 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PNVGKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNVGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|331266373|ref|YP_004326003.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
gi|326683045|emb|CBZ00662.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|315613172|ref|ZP_07888082.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
gi|315314734|gb|EFU62776.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|419779267|ref|ZP_14305143.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
gi|383186295|gb|EIC78765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|417934676|ref|ZP_12577996.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
gi|340771246|gb|EGR93761.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDDTVALKLALTGAIKDQ 199
>gi|293365453|ref|ZP_06612162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307703409|ref|ZP_07640351.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|322375249|ref|ZP_08049762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|419780107|ref|ZP_14305957.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
gi|291315821|gb|EFE56265.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307622816|gb|EFO01811.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|321279512|gb|EFX56552.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|383185266|gb|EIC77762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|42519031|ref|NP_964961.1| hypothetical protein LJ1105 [Lactobacillus johnsonii NCC 533]
gi|41583318|gb|AAS08927.1| hypothetical protein LJ_1105 [Lactobacillus johnsonii NCC 533]
Length = 279
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 1/253 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ Q + I+VLN+ D+ W Y+ +G VI
Sbjct: 25 IDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKADLADPIQTKKWTHYYQDEGNFVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L ++ K + K +KG +R I G PN GKS++INR++ R
Sbjct: 85 SMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPMIRVAIAGIPNCGKSTIINRMVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + SDQ KLA C I +
Sbjct: 145 NAAIVGDKPGVTRGQSWLKTKTNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++ L + + +MD + + + D + + +L
Sbjct: 205 DVALFVIEFLKQNYRDDLVKFARISSEEMDSMSNPDLLLAMTNKYGMRDDYDKFSLFMLQ 264
Query: 240 DFRKGKFGWISLE 252
RKGK G I+ +
Sbjct: 265 RLRKGKLGRITFD 277
>gi|422851604|ref|ZP_16898274.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
gi|325694492|gb|EGD36401.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 102/169 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|422823564|ref|ZP_16871752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
gi|324992891|gb|EGC24811.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLERQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|422884181|ref|ZP_16930630.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
gi|332360874|gb|EGJ38680.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 102/169 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|218288271|ref|ZP_03492570.1| GTP-binding protein HSR1-related [Alicyclobacillus acidocaldarius
LAA1]
gi|218241630|gb|EED08803.1| GTP-binding protein HSR1-related [Alicyclobacillus acidocaldarius
LAA1]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 23/268 (8%)
Query: 5 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 64
+E+ DAR+P+S+ P++D+ N+ R++VL R D+ + W F ++G I N
Sbjct: 1 MELADARLPVSSRSPVLDELARNKPRLIVLTRVDLADPHCTDRWVERFQREGVIAIPVNA 60
Query: 65 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 124
+ G G R + R++G+ R I G PNVGKSS +N+L R +
Sbjct: 61 RTGQGLRDFKRALDEFVEAKMNRARARGIEKAVTRGMICGIPNVGKSSFVNQLAGRAVAK 120
Query: 125 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 184
RPGVTR L+W+R G+ E LD+PG++ ++++ +KLA + E ++ +V A
Sbjct: 121 TGDRPGVTRSLQWIRVGR-TELLDTPGVLAPKLANDEQGLKLAASGAVKEEIFEAYEVCA 179
Query: 185 -ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKL-------ALHLFNG-------- 228
+L M R P AL RY + ++ T +Q + H+
Sbjct: 180 YVLAYMSQRYP----DALAKRYGLRVETPVMWTNIQDVWPAVQPWFEHIGRARGALAAGG 235
Query: 229 --DTHQAAFRILTDFRKGKFGWISLERP 254
D + A ++ D ++G+ G +SLE P
Sbjct: 236 AVDEERVAKMVIRDLQEGRLGPVSLEWP 263
>gi|149025508|ref|ZP_01836441.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|418102736|ref|ZP_12739811.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|419475537|ref|ZP_14015377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|419486690|ref|ZP_14026455.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|421209001|ref|ZP_15666017.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|421225031|ref|ZP_15681771.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|421240691|ref|ZP_15697237.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
gi|147929380|gb|EDK80377.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|353776224|gb|EHD56702.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|379561082|gb|EHZ26103.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|379587323|gb|EHZ52172.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|395574206|gb|EJG34786.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|395589726|gb|EJG50042.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|395608482|gb|EJG68576.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETFRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|357238989|ref|ZP_09126325.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
gi|356752711|gb|EHI69836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
Length = 282
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ A W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDLADNARTKEWKKYFEAQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ A++L SD + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQATVKKVTEAAQSLMSDKLDRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKVLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAI-LVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
+V L A P + L R+K I+++ + + F D + +
Sbjct: 205 EVTIFGLNYFKANYP----SRLVERFKGINLEDEAPQIIMDMTRKLGFKDDYGRFYQLFV 260
Query: 239 TDFRKGKFGWISLER 253
D R GK G +L++
Sbjct: 261 KDVRDGKLGQYTLDQ 275
>gi|395242086|ref|ZP_10419085.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480447|emb|CCI85325.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
Length = 279
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 1/254 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+EV DARIP S+ +P++ +G + +++LN+ D+ AW G V+
Sbjct: 25 IDVVVEVLDARIPSSSRNPMIADLVGTKPHVIILNKADLADPVLTKAWQKKLQTNGKFVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ L L K AS+ K KG + +R G PN GKS++INRL+ R
Sbjct: 85 AMDSLHNTNMQGLIHLIKKAASEKTKKLEEKGAVNPTIRIAFAGIPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ W++ +++ LD+PGI+ + DQA KLA I + +
Sbjct: 145 NVAEVGNKPGVTKGQTWLKTSTNIQILDTPGILWPKFDDQAVGYKLAAFGAIKDTVFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++L + + K ++ + L ++ D + + +L
Sbjct: 205 DVALFTIKLLRQYYLAELVKFARSTKEQIEQISDTDLLLALTDIYGMRDDYDRFSLYMLQ 264
Query: 240 DFRKGKFGWISLER 253
RKGK G I+L+R
Sbjct: 265 RLRKGKIGKITLDR 278
>gi|374582895|ref|ZP_09655989.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
gi|374418977|gb|EHQ91412.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
Length = 276
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 5/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP S+ +P++ + LGN+ R+L+LN+ D+ + W Y K+ + V
Sbjct: 24 VDVVLELADARIPASSRNPMLHKLLGNKARLLLLNKADLADSNWTSKWLKYL-KESSPVY 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G ++ + + K+ KG+ P+ +R IVG PN+GKSSLIN+L
Sbjct: 83 AVSATTGVGIKQIVPELERMVLAKQAKQAQKGIRPQMIRVMIVGIPNIGKSSLINQLTGG 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +WVR + +E LD+PG++ + D KLA I + +D+
Sbjct: 143 AQAKVGNKPGVTRGNQWVRIHERVELLDTPGMLWPKFDDLDVGRKLAALGAIKDDVFDIE 202
Query: 181 DVAAILVQMLARIPTVGITALQNR-YKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+++ ++ L + QN ++ ++G K + +H DT +AA L
Sbjct: 203 ELSIWIIDWLNLHSPSSLARYQNEDTEVTLEGLGRK---RGCLIHGGRIDTLKAAQIFLR 259
Query: 240 DFRKGKFGWISLE 252
+ R G+ G I+++
Sbjct: 260 ELRMGQLGPITMD 272
>gi|320527487|ref|ZP_08028668.1| ribosome biogenesis GTP-binding protein YlqF [Solobacterium moorei
F0204]
gi|320132200|gb|EFW24749.1| ribosome biogenesis GTP-binding protein YlqF [Solobacterium moorei
F0204]
Length = 289
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 12/260 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IE+RDARIP ++ +P++ Q + R++VL++ DM W Y + QG
Sbjct: 25 VDMLIELRDARIPEASVNPMLKQMAQGKPRLIVLSKIDMADPVQTKKWVEYLS-QGENAC 83
Query: 61 FS-----NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 115
+ + Q G K+ R A L + K+ ++G+ PRAVRA G PNVGKS++IN
Sbjct: 84 LALDLMRDSQCGK---KIIREAIKLMEEKRQKQIARGIRPRAVRAMACGIPNVGKSTMIN 140
Query: 116 RLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
R+ + AA +PGVTR L W+ +L+ LD+PG++ + D+ LA I +
Sbjct: 141 RINGKNSLKAADKPGVTRSLTWLHADSNLDLLDTPGVLWPKFDDEKTGSLLAALGSINDD 200
Query: 176 SYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQA 233
D VA + + + + + + K++ +G K +K L + D +A
Sbjct: 201 ILDHKMVAMDAIHYIQDLYPNLLEEIYDSGKVNPNGML-KAIAKKRNLLKADSELDVKRA 259
Query: 234 AFRILTDFRKGKFGWISLER 253
A LT+ R GK G ++LER
Sbjct: 260 AELFLTELRHGKLGRLTLER 279
>gi|306829521|ref|ZP_07462711.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
gi|304428607|gb|EFM31697.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
Length = 312
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ W YF QG + +
Sbjct: 54 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPVMTKEWRQYFESQGIQTL 113
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 114 AINSKEHVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 173
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A A+KLA+ I ++
Sbjct: 174 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDDAVALKLALTGAIKDQ 228
>gi|227889893|ref|ZP_04007698.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|268319576|ref|YP_003293232.1| hypothetical protein FI9785_1101 [Lactobacillus johnsonii FI9785]
gi|227849337|gb|EEJ59423.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|262397951|emb|CAX66965.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 279
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 1/253 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ Q + I+VLN+ D+ W Y+ +G VI
Sbjct: 25 IDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKADLADPIQTKKWTRYYQDEGNFVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L ++ K + K +KG +R I G PN GKS++INR++ R
Sbjct: 85 SMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPMIRVAIAGIPNCGKSTIINRMVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + SDQ KLA C I +
Sbjct: 145 NAAIVGDKPGVTRGQSWLKTKTNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++ L + + +MD + + + D + + +L
Sbjct: 205 DVALFVIEFLKQNYRDDLVKFARISSEEMDSMSNPDLLLAMTNKYGMRDDYDKFSLFMLQ 264
Query: 240 DFRKGKFGWISLE 252
RKGK G I+ +
Sbjct: 265 RLRKGKLGRITFD 277
>gi|340398716|ref|YP_004727741.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
gi|338742709|emb|CCB93214.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
Length = 284
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADSNRTKEWRSYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ AK+L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTDKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T + R+K I+++ + ++ F D + +
Sbjct: 205 EVT---IFGLNYFKTYYPERFEERFKGINLEEEAPEIIMEMTRKLGFREDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGRYTLD 274
>gi|307705206|ref|ZP_07642076.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621228|gb|EFO00295.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D ++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIAHQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|300361595|ref|ZP_07057772.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
gi|300354214|gb|EFJ70085.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
Length = 279
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 1/253 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV+IEV DAR+P+S+ +P++ Q + I++LN+ D+ W YF +G VI
Sbjct: 25 IDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIILNKSDLADPIQTKKWTRYFQDEGNFVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L ++ K K +KG +R I G PN GKS++INR++ R
Sbjct: 85 SMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNPMIRVAIAGIPNCGKSTIINRMVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + SDQ KLA C I +
Sbjct: 145 NAAIVGDKPGVTRGQSWLKTKTNVQILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++ L + + +++ + + + D + + +L
Sbjct: 205 DVALFVIEFLKQNYQKDLAKFAQATSEELENMSNPDLLLAMTNKYGMRDDYDKFSLFMLQ 264
Query: 240 DFRKGKFGWISLE 252
RKGK G I+ +
Sbjct: 265 RLRKGKLGRITFD 277
>gi|422855507|ref|ZP_16902165.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
gi|327462196|gb|EGF08523.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W +YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWRSYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|417837634|ref|ZP_12483872.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
gi|338761177|gb|EGP12446.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
Length = 279
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 1/253 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D++IEV DAR+P+S+ +P++ Q + I+VLN+ D+ W Y+ +G VI
Sbjct: 25 IDILIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKADLADPIQTKKWTRYYQDEGNFVI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L ++ K + K +KG +R I G PN GKS++INR++ R
Sbjct: 85 SMDAQHNTNMTSLFKIIKLAGKEKTDKLIAKGASNPMIRVAIAGIPNCGKSTIINRMVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR W++ +++ LD+PGI+ + SDQ KLA C I +
Sbjct: 145 NAAIVGDKPGVTRGQSWLKTKTNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-LHLFNGDTHQAAFRILT 239
DVA +++ L + + +MD + + + D + + +L
Sbjct: 205 DVALFVIEFLKQNYRDDLVKFARISSEEMDSMSNPDLLLAMTNKYGMRDDYDKFSLFMLQ 264
Query: 240 DFRKGKFGWISLE 252
RKGK G I+ +
Sbjct: 265 RLRKGKLGRITFD 277
>gi|309775666|ref|ZP_07670665.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 3_1_53]
gi|308916572|gb|EFP62313.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 3_1_53]
Length = 288
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 142/262 (54%), Gaps = 15/262 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+RDARIP ++ +P++++ N+ R++VL+++D A W + T+V+
Sbjct: 29 VDMVIELRDARIPNASKNPMIEELCQNKPRLIVLSKKDKADAAATALWCKQLRNETTRVV 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ K+ ++ L + + +G+ PRA+RA +VG PNVGKS+ INR+ K+
Sbjct: 89 ALDILKENIIPKIVEQSQLLMQAKIERMKRRGIRPRAIRAMVVGVPNVGKSTFINRISKK 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ RPGVTR L+W + ++LE LD+PG++ + D+ + LAI I + +
Sbjct: 149 KVAVTGNRPGVTRALQWSKVNQNLELLDTPGVLWPKFEDETVGVLLAITGAIRDEILPLE 208
Query: 181 DVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLA-----LHLFNGDTHQ 232
++AA ++ ++A+ P ALQ RY++ C + ++++A + D +
Sbjct: 209 EIAAWAMRYLIAQHP----DALQKRYEL---AVCDDPYEMLERIARKRGFMRKDEMDEKR 261
Query: 233 AAFRILTDFRKGKFGWISLERP 254
L + R K G I+ E P
Sbjct: 262 TIETFLRELRDDKLGAITWEMP 283
>gi|358464945|ref|ZP_09174903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357066474|gb|EHI76624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++++ +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDDTIALKLALTGAIKDQ 199
>gi|406577937|ref|ZP_11053511.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406587074|ref|ZP_11061987.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419814646|ref|ZP_14339414.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|419817241|ref|ZP_14341408.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404458911|gb|EKA05297.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404466256|gb|EKA11605.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404471552|gb|EKA16063.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404473438|gb|EKA17776.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDEIVALKLALTGAIKDQ 199
>gi|422821227|ref|ZP_16869420.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
gi|324991141|gb|EGC23075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQNYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|307706601|ref|ZP_07643408.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307618056|gb|EFN97216.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF +G + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAITKEWRQYFESKGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D ++R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQRERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|373471022|ref|ZP_09562101.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371761215|gb|EHO49849.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 279
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 138/264 (52%), Gaps = 18/264 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D++IE+ DAR P +T +P + + RI++LN+ D+ AD NA WA+Y+ +QG
Sbjct: 24 VDIIIEMTDARAPEATRNPEIMGLGTGKSRIIILNKADL---ADENANIRWASYYKEQGY 80
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
+ +F + + G L + + ++ D + +G+ R VRA + G PNVGKS+LIN +
Sbjct: 81 ECMFMDSRQKNGVNSLIKAIENVSKDKRERDAKRGIKNRPVRAMVAGIPNVGKSTLINTV 140
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
R M +PGVT+ +W++ +E LD+PGI+ + D+ +A I +
Sbjct: 141 SGRAMAKTGNKPGVTKGNQWIKLKGQVELLDTPGILWPKFEDERVGEMIAFIGSINDMII 200
Query: 178 DVADVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQKLAL------HLFNGDT 230
D+ ++ L++ +L P V L+ R+ I +G + K+A D
Sbjct: 201 DIRELGLELIKWLLKNRPEV----LEERFDIK-EGEDENAVLIKIATVRGCTKKGGELDY 255
Query: 231 HQAAFRILTDFRKGKFGWISLERP 254
+AA ++ +FR GK G I+L+ P
Sbjct: 256 DKAASVLVNEFRSGKLGRITLQIP 279
>gi|373106131|ref|ZP_09520435.1| ribosome biogenesis GTP-binding protein YlqF [Stomatobaculum
longum]
gi|371653227|gb|EHO18631.1| ribosome biogenesis GTP-binding protein YlqF [Stomatobaculum
longum]
Length = 293
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 129/260 (49%), Gaps = 9/260 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR P S+ +P + + ++R++VLN+ D+ A AW F +G +
Sbjct: 24 VDMVIELLDARAPYSSGNPEIRRLGQGKERVIVLNKADLADAATTAAWQRAFQAEGAHCV 83
Query: 61 FSNGQLGMGTMKL-SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
+ + G G KL R A A + R +G+L R VRA + G PNVGKS+LIN L
Sbjct: 84 AMDAR-GSGNRKLLMRTIDAAAEAKRERDRKRGILNRPVRAMVAGIPNVGKSTLINMLSG 142
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
R +PGVTR +W+RF + +E LD+PGI+ + D A K+A I E D
Sbjct: 143 RSSAKTGNKPGVTRGNQWIRFHQSVELLDTPGILWPKFEDPAIGEKIAFLGSINEMIVDK 202
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG-----DTHQAA 234
++A L+ L + RY + + + + G DT +AA
Sbjct: 203 TELAVTLLGFLQ--ANGKLAGAAERYALTGTESPAEILCRIAERRGCLGAGGAADTEKAA 260
Query: 235 FRILTDFRKGKFGWISLERP 254
++ +FR G G ISLE P
Sbjct: 261 AIVINEFRSGALGRISLEAP 280
>gi|422865484|ref|ZP_16912109.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
gi|327489684|gb|EGF21475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQNYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|322391938|ref|ZP_08065402.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
gi|321145164|gb|EFX40561.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ R+L+LN+ D+ W +F QG + +
Sbjct: 25 VDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKADLADPVLTKEWRQHFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQITVKVVTDAAKKLMVEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W + KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWFKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTNYPEKLQERFKQMNLDDEAPEIIMDMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|148998410|ref|ZP_01825852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225861096|ref|YP_002742605.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Taiwan19F-14]
gi|298230995|ref|ZP_06964676.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255437|ref|ZP_06979023.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502842|ref|YP_003724782.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|307067683|ref|YP_003876649.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|387788308|ref|YP_006253376.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|417312595|ref|ZP_12099307.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|418076302|ref|ZP_12713540.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|418083062|ref|ZP_12720262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|418085205|ref|ZP_12722387.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|418093850|ref|ZP_12730979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|418100194|ref|ZP_12737282.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|418119865|ref|ZP_12756816.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|418141608|ref|ZP_12778421.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|418150615|ref|ZP_12787364.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|418152758|ref|ZP_12789498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|418157500|ref|ZP_12794216.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|418164416|ref|ZP_12801088.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|418171346|ref|ZP_12807971.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|418195374|ref|ZP_12831854.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|418197961|ref|ZP_12834423.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|418223113|ref|ZP_12849755.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|418227602|ref|ZP_12854221.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|419425160|ref|ZP_13965358.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|419427112|ref|ZP_13967295.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|419429290|ref|ZP_13969457.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|419436003|ref|ZP_13976095.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|419438236|ref|ZP_13978306.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|419444653|ref|ZP_13984668.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|419446789|ref|ZP_13986794.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|419448772|ref|ZP_13988769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|419451475|ref|ZP_13991461.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|419501748|ref|ZP_14041434.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|419518929|ref|ZP_14058536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|419528549|ref|ZP_14068091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|421234138|ref|ZP_15690759.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|421249446|ref|ZP_15705906.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|421287527|ref|ZP_15738293.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|421314308|ref|ZP_15764898.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
gi|147755807|gb|EDK62852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225726497|gb|ACO22348.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14]
gi|298238437|gb|ADI69568.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|306409220|gb|ADM84647.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|327389303|gb|EGE87648.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|353749429|gb|EHD30074.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|353756091|gb|EHD36693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|353757160|gb|EHD37754.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|353765726|gb|EHD46268.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|353772903|gb|EHD53402.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|353788978|gb|EHD69374.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|353805859|gb|EHD86133.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|353815399|gb|EHD95617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|353819403|gb|EHD99601.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|353823948|gb|EHE04122.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|353831693|gb|EHE11818.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|353835863|gb|EHE15954.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|353861901|gb|EHE41834.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|353863701|gb|EHE43623.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|353879731|gb|EHE59554.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|353883203|gb|EHE63012.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|379138050|gb|AFC94841.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|379538241|gb|EHZ03422.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|379551238|gb|EHZ16333.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|379564572|gb|EHZ29568.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|379572346|gb|EHZ37303.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|379602109|gb|EHZ66881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|379614329|gb|EHZ79039.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|379615845|gb|EHZ80550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|379618565|gb|EHZ83240.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|379620047|gb|EHZ84713.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|379623180|gb|EHZ87814.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|379623830|gb|EHZ88463.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|379641908|gb|EIA06443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|395601894|gb|EJG62040.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|395614067|gb|EJG74089.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|395889936|gb|EJH00943.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|395914808|gb|EJH25652.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
Length = 283
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLIKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|111115476|ref|YP_710094.1| ribosomal biogenesis GTPase [Borrelia afzelii PKo]
gi|110890750|gb|ABH01918.1| hypothetical protein BAPKO_0687 [Borrelia afzelii PKo]
Length = 268
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
++V+E+ DAR P S+ +PL ++ + N+ +I++L++ D+ +A+ W YF G VI
Sbjct: 16 NIVLEILDARAPFSSKNPLTEKIIKNQTKIILLHKSDIAQIAEIIKWKKYFENLGNTVII 75
Query: 62 SN-GQLGMGTMKLSRLAK-ALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
SN + GM + + K A+ + N K + K L I+G PNVGKSS+IN L
Sbjct: 76 SNIYKKGMRKQIIDNIKKLAIVKKIKNYKEKIKVL--------IIGVPNVGKSSIINLLS 127
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
++ A +PG T+ ++ V+ +++ D PGI+ + DQ+ A KLAI D I D
Sbjct: 128 GKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLVDQSIAKKLAILDMIKNEIVD 187
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-----LHLFNG-DTHQ 232
D+A L++++ + L +Y+I + +Q A +H N D +
Sbjct: 188 NTDLALYLLEIMDQNNK---NILLKKYEIYHKNSLD--ILQNFAKARKLIHKKNELDIEK 242
Query: 233 AAFRILTDFRKGKFGWISLER 253
AA ++ +FR+GKFG I L++
Sbjct: 243 AAKILIKEFREGKFGKIILDK 263
>gi|422826354|ref|ZP_16874533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
gi|324994472|gb|EGC26385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
Length = 283
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQNYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|422846663|ref|ZP_16893346.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
gi|325687471|gb|EGD29492.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
Length = 283
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQNYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|451344263|ref|ZP_21913323.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449336977|gb|EMD16145.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 289
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 11/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR P S+ + D+ L N+ R++++ + D+ W +++ ++G +
Sbjct: 29 VDMVIELVDARAPFSSRNTSFDRILKNKPRLVLMTKSDLADSQITEKWQSFYKEKGFLSL 88
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K+ + A+ S+ K KGL RA+RA I+G PNVGKS+LIN L KR
Sbjct: 89 AVNLKNFKEEKKIINMCLAMLSEKREKEAQKGLKIRAIRAMIIGVPNVGKSTLINALAKR 148
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ A +PGVT+ + +R KD E D+PGI+P + SD + +A+ IG D+
Sbjct: 149 KAAIAGNKPGVTKAQQIIRINKDFELFDTPGILPPKYSDFITSCNVAL---IGSIKKDIL 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTF--VQKLAL--HL--FNGDTHQAA 234
+ + + + + AL RY + D ++AL HL NG+T
Sbjct: 206 PLDDLFIYAVKYLNQHYSKALMKRYGLSFDENQDWILDAYDQIALVRHLPKKNGETDYDR 265
Query: 235 FR--ILTDFRKGKFGWISLERP 254
+ D G FG I+ E P
Sbjct: 266 VQDIFFKDLSDGVFGGITWENP 287
>gi|392331467|ref|ZP_10276082.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
gi|391419146|gb|EIQ81958.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
Length = 282
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 107/183 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ A W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADAARTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQPTVKKVTEAAKELMADKIQRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQVLPMD 204
Query: 181 DVA 183
+V
Sbjct: 205 EVT 207
>gi|335029924|ref|ZP_08523425.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
gi|334267789|gb|EGL86242.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
Length = 283
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ +L+LN+ D+ W +F QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPSLLILNKADLADPTLTKEWRQHFEAQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 239
+V + L T LQ R+K +++D + + + F D + +
Sbjct: 205 EVT---IFGLNYFKTHYPEKLQERFKQMNLDDEAPEIIMDMTRILGFRDDYDRFYNLFVK 261
Query: 240 DFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 262 EVRDGKLGNYTLD 274
>gi|357637896|ref|ZP_09135769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|418416463|ref|ZP_12989662.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
gi|357586350|gb|EHJ55758.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|410874281|gb|EKS22212.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
Length = 285
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 135/254 (53%), Gaps = 6/254 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W ++ K+G K +
Sbjct: 25 VDFVTILVDARLPLSSLNPMLTKIVGDKPKLMILNKADLADSQRTKQWRDFYEKKGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AKAL +D K +G+ + +R I+G PN GK++L+NRL +
Sbjct: 85 SINSKEQSTVKKVTDAAKALMTDKLKKLEDRGIQKQTLRTMIIGIPNAGKTTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEQVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLA-RIPTVGITALQNRYK-IDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
DV + P L+ R+K ID++ + + + F + + +
Sbjct: 205 DVTIFGLNFFKNNYP----ERLKKRFKDIDLEEEAPEIIMSLTSKLGFKEEYDRFYQLFV 260
Query: 239 TDFRKGKFGWISLE 252
+ R+GK G +L+
Sbjct: 261 KEVREGKLGTYTLD 274
>gi|216263714|ref|ZP_03435709.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
ACA-1]
gi|384207131|ref|YP_005592853.1| hypothetical protein BafPKo_0667 [Borrelia afzelii PKo]
gi|215980558|gb|EEC21379.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
ACA-1]
gi|342857015|gb|AEL69863.1| conserved hypothetical protein [Borrelia afzelii PKo]
Length = 279
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
++V+E+ DAR P S+ +PL ++ + N+ +I++L++ D+ +A+ W YF G VI
Sbjct: 27 NIVLEILDARAPFSSKNPLTEKIIKNQTKIILLHKSDIAQIAEIIKWKKYFENLGNTVII 86
Query: 62 SN-GQLGMGTMKLSRLAK-ALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
SN + GM + + K A+ + N K + K L I+G PNVGKSS+IN L
Sbjct: 87 SNIYKKGMRKQIIDNIKKLAIVKKIKNYKEKIKVL--------IIGVPNVGKSSIINLLS 138
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
++ A +PG T+ ++ V+ +++ D PGI+ + DQ+ A KLAI D I D
Sbjct: 139 GKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLVDQSIAKKLAILDMIKNEIVD 198
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-----LHLFNG-DTHQ 232
D+A L++++ + L +Y+I + +Q A +H N D +
Sbjct: 199 NTDLALYLLEIMDQNNK---NILLKKYEIYHKNSLD--ILQNFAKARKLIHKKNELDIEK 253
Query: 233 AAFRILTDFRKGKFGWISLER 253
AA ++ +FR+GKFG I L++
Sbjct: 254 AAKILIKEFREGKFGKIILDK 274
>gi|417915454|ref|ZP_12559065.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
gi|342834020|gb|EGU68296.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
Length = 283
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ + W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPSMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|377809646|ref|YP_005004867.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
gi|361056387|gb|AEV95191.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
Length = 288
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 131/259 (50%), Gaps = 14/259 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP S+ +P++ + + N+ +L+L + D+ + W Y+ + G I
Sbjct: 25 VDIVFELVDARIPESSRNPMIQEVIENKPHLLLLTKADLADPVETKEWLKYYRQHGENAI 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + R + + + KG++ +RA +G PNVGKS+L+N LL +
Sbjct: 85 AIDSRETKIEQVIIRETNKILKEKIQNKADKGIISHEIRAMCIGIPNVGKSTLLNHLLNK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ L LD+PGI+ + DQ+ KLA I E Y
Sbjct: 145 KVAITGDKPGVTKKQQWLKSPHGLSLLDTPGILWPKFDDQSIGTKLAFTGAIKENLYAND 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKI---DMDGTCGK---TFVQKLALHLFNGDTHQA 233
DVA + + + P L +RYK+ ++D + + +KL + D +A
Sbjct: 205 DVALYGLNIFRNKYP----AELLSRYKLNEEELDQNLPELLLSITKKLGM---KDDYDRA 257
Query: 234 AFRILTDFRKGKFGWISLE 252
+ RI+ D RKGK G L+
Sbjct: 258 SLRIMLDARKGKLGRFCLD 276
>gi|300812564|ref|ZP_07092981.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300496437|gb|EFK31542.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 285
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 127/257 (49%), Gaps = 5/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEV DARIP ++ +P++ + +G++ ++VLN+ D+ W T V+
Sbjct: 25 IDVVIEVLDARIPSASRNPMISELVGDKPHLIVLNKTDLADPVMTKLWQKKLQGPRTLVM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L L K AS+ K +G +R +VG PN GKS++INRL+ R
Sbjct: 85 AMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIRICLVGVPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ W++ ++ LD+PGI+ + DQ KLA I + +
Sbjct: 145 NVTMTGDRPGVTKGQAWLKTPYGIQILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA +++ L + + N K ++ + LA+ NG D + + +
Sbjct: 205 DVALFVIRQLRQYYPAYLAKFANCTKDKLENIGDTDLL--LAMTQNNGMRDDYDRFSLFM 262
Query: 238 LTDFRKGKFGWISLERP 254
L RKGK G ISL+RP
Sbjct: 263 LQRLRKGKLGRISLDRP 279
>gi|402836326|ref|ZP_10884866.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
gi|402271422|gb|EJU20666.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
Length = 295
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 29/275 (10%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ D+RIPLS+ +P++++ + +KR+++L + D+ + W + + G +
Sbjct: 26 VDLVVEIVDSRIPLSSRNPIIEELVAGKKRVVILGKFDLADESVTMEWKAFLGRNGIIAL 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + G + + + +R L R +R IVG PNVGKSS INRL+ R
Sbjct: 86 PVDSRNGDNIKAFYTILDKYQQERDRER----ALKRPLRMMIVGVPNVGKSSFINRLIGR 141
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ +WV ++ LD+PGI+ + + + LA C I + +V
Sbjct: 142 KSAKTGDRPGVTKGKQWVTLANGMQLLDTPGILWPKFEEPGVGLNLAFCGSIKDEILNVQ 201
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKID--MDGTCGK----------------TFVQKL 221
D+A L+++L A P L RYK+D MD K +K
Sbjct: 202 DLAFELLKVLRANYP----DELIARYKLDGLMDDDEEKYDEYGEPINPVLADMEAIAKKR 257
Query: 222 ALHLFNG--DTHQAAFRILTDFRKGKFGWISLERP 254
L G D + +L +FR G G ISLERP
Sbjct: 258 GFMLSGGRIDYERTGRAVLDEFRAGLIGKISLERP 292
>gi|313123918|ref|YP_004034177.1| ras superfamily GTP-binding protein ylqf [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|422843896|ref|ZP_16890606.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|312280481|gb|ADQ61200.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325686019|gb|EGD28078.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 285
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 5/257 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVVIEV DARIP ++ +P++ + +G++ +++LN+ D+ W T V+
Sbjct: 25 IDVVIEVLDARIPSASRNPMISELVGDKPHLIILNKTDLADPVMTKLWQKKLQGPRTLVM 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ Q L L K AS+ K +G +R +VG PN GKS++INRL+ R
Sbjct: 85 AMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIRVCLVGVPNCGKSTIINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ W++ ++ LD+PGI+ + DQ KLA I + +
Sbjct: 145 NVTMTGDRPGVTKGQAWLKTPYGIQILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG---DTHQAAFRI 237
DVA +++ L + + N K ++ + LA+ NG D + + +
Sbjct: 205 DVALFVIRQLRQYYPAYLAKFANCTKDKLENIGDTDLL--LAMTQNNGMRDDYDRFSLFM 262
Query: 238 LTDFRKGKFGWISLERP 254
L RKGK G ISL+RP
Sbjct: 263 LQRLRKGKLGRISLDRP 279
>gi|71903521|ref|YP_280324.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS6180]
gi|94988630|ref|YP_596731.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS9429]
gi|94992453|ref|YP_600552.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS2096]
gi|209559441|ref|YP_002285913.1| ribosomal biogenesis GTPase [Streptococcus pyogenes NZ131]
gi|306827336|ref|ZP_07460623.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|417856859|ref|ZP_12501918.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
gi|71802616|gb|AAX71969.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
gi|94542138|gb|ABF32187.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
gi|94545961|gb|ABF36008.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
gi|209540642|gb|ACI61218.1| GTP-binding protein [Streptococcus pyogenes NZ131]
gi|304430483|gb|EFM33505.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|387933814|gb|EIK41927.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
Length = 282
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|167769414|ref|ZP_02441467.1| hypothetical protein ANACOL_00744 [Anaerotruncus colihominis DSM
17241]
gi|167668382|gb|EDS12512.1| ribosome biogenesis GTP-binding protein YlqF [Anaerotruncus
colihominis DSM 17241]
Length = 301
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 12/264 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+++E+ DARIP+S+ +P + + G + R+L+LN+ D A W Y+A G +
Sbjct: 39 VDILVELADARIPVSSRNPEIGRLAGQKPRVLLLNKCDAADDAITRRWLDYYAGAGLPAL 98
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ + G G L + + KR +KG+ + VR + G PNVGKSSLINRL
Sbjct: 99 AADCRSGRGLGAFLPLVRETLAPQLAKRAAKGMSGQPVRMMVAGVPNVGKSSLINRLAGS 158
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVTR +WV GK +E LD PG++ + D A +LA + + D+
Sbjct: 159 RRAKVEDRPGVTRGRQWVSLGKGVELLDMPGVLWPKFEDPAVGERLAFTGAVKD---DIV 215
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI---DMDGTCGKTFV----QKLALHLFNGD--TH 231
D+ + +++LA + L RY+ + DG + +K + G+ T
Sbjct: 216 DIELLAMRLLALLAADYPKQLAQRYRFAPGEADGLDAYGLLRLVGKKRGMLAAGGEVNTE 275
Query: 232 QAAFRILTDFRKGKFGWISLERPP 255
+AA +L +FR GK G +LE PP
Sbjct: 276 RAAITMLDEFRSGKLGKFTLEVPP 299
>gi|365853584|ref|ZP_09393851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
gi|363712209|gb|EHL95908.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
Length = 296
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 20/262 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA---WATYFAKQGT 57
+D+V EV DARIPL++ +P + + G + + +L ++D+ ADR A W YF G
Sbjct: 32 VDIVFEVIDARIPLTSQNPEVARITGEKPHLFILTKKDL---ADREATQRWLAYFKDHGQ 88
Query: 58 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 117
I + + + + + S + KG+ R +RA VG PNVGKS+++NRL
Sbjct: 89 PAIAVDAKDHFNINDVLSVINPIMSPKLAREEQKGMKKRPIRAVSVGVPNVGKSTVLNRL 148
Query: 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSY 177
+ RR RPGVT+ +W++ GK LE LD+PGI+ + + Q A KLA+ I + +
Sbjct: 149 VNRRAAQVGNRPGVTKGQQWLKAGKKLELLDTPGILWPKFASQEIANKLALTGAIKDSVF 208
Query: 178 DVADVAAI-LVQMLARIPTVGITALQNRYKIDMDGTCGKT------FVQKLALHLFNGDT 230
D+A L AR L RY+++ D +KL + D
Sbjct: 209 ASDDIALFGLKHFRAR----HRDQLMARYRLNDDDFALSDVDLLLLITKKLGMR---DDY 261
Query: 231 HQAAFRILTDFRKGKFGWISLE 252
+A+ RI+ D R K G +L+
Sbjct: 262 ERASNRIIQDIRNNKLGGFTLD 283
>gi|139473751|ref|YP_001128467.1| ribosomal biogenesis GTPase [Streptococcus pyogenes str. Manfredo]
gi|134271998|emb|CAM30236.1| putative GTPase protein [Streptococcus pyogenes str. Manfredo]
Length = 282
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKLQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|50914224|ref|YP_060196.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10394]
gi|50903298|gb|AAT87013.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
Length = 282
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|421236265|ref|ZP_15692864.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
gi|395603232|gb|EJG63372.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
Length = 283
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF Q + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWCQYFESQEIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AVNSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|417847907|ref|ZP_12493866.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1073]
gi|339456026|gb|EGP68622.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1073]
Length = 253
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 102/167 (61%)
Query: 9 DARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 68
DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + + N + +
Sbjct: 3 DARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTLAINSKEQV 62
Query: 69 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR 128
++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +++ +
Sbjct: 63 TVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNK 122
Query: 129 PGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 123 PGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 169
>gi|418166654|ref|ZP_12803310.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
gi|353830250|gb|EHE10380.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
Length = 283
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKNLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|312793163|ref|YP_004026086.1| ribosome biogenesis gtp-binding protein ylqf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180303|gb|ADQ40473.1| ribosome biogenesis GTP-binding protein YlqF [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 282
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 10/259 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+ + + DAR PLS+ + ++ + ++ +I VLN+ D+ + YF + +
Sbjct: 24 IDLYLILLDARAPLSSRNEQLESLIKDKPKIYVLNKSDLADEKKNEEFVKYFQENNQVAV 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G + ++A+ L D + + KG + +R G++G PNVGKS+LIN++
Sbjct: 84 CIDSLKGTNVKNILKIAENLLKDKIEEAKQKGR-KKIIRFGVLGIPNVGKSTLINKITNS 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +W++ E LD+PGI+ ++ D AIKL I E +D
Sbjct: 143 AKAKTGDKPGVTRAKQWIKINDYFEMLDTPGILVPKLEDDTVAIKLCAIGSIKEELFDKE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV----QKLALHLFNG--DTHQAA 234
VA ++M+ + L +Y ID + ++ +K L G DT +AA
Sbjct: 203 LVAKKTIEMIKKKYC---QLLNQKYSIDFSTLSEEEYLTEIGKKRGCVLKEGRIDTLKAA 259
Query: 235 FRILTDFRKGKFGWISLER 253
L D RKGK G I+L+
Sbjct: 260 TVFLDDLRKGKIGRITLDE 278
>gi|421893234|ref|ZP_16323784.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
gi|379981030|emb|CCG27506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
Length = 282
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|15675137|ref|NP_269311.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SF370]
gi|71910695|ref|YP_282245.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS5005]
gi|410680553|ref|YP_006932955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
gi|13622297|gb|AAK34032.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853477|gb|AAZ51500.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
gi|395453930|dbj|BAM30269.1| ribosomal biogenesis GTPase [Streptococcus pyogenes M1 476]
gi|409693142|gb|AFV38002.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
Length = 282
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|422878828|ref|ZP_16925294.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|422928676|ref|ZP_16961618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|422931651|ref|ZP_16964582.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
gi|332366881|gb|EGJ44622.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|339616318|gb|EGQ20970.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|339619951|gb|EGQ24526.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
Length = 283
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQRYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILV---------QMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTH 231
+V + +++AR + ++ +DM QKL F D
Sbjct: 205 EVTIFGLNYFKEHYPEELIARFKQLDLSQESPDMIMDM--------TQKLG---FRDDYD 253
Query: 232 QAAFRILTDFRKGKFGWISLE 252
+ + D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|422876383|ref|ZP_16922853.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
gi|332361191|gb|EGJ38995.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
Length = 283
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQRYFESQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAIC 169
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALT 193
>gi|418189390|ref|ZP_12825905.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|419495334|ref|ZP_14035052.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|421303334|ref|ZP_15753998.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
gi|353856532|gb|EHE36501.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|379595416|gb|EHZ60224.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|395901956|gb|EJH12892.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
Length = 283
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF Q + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWCQYFESQEIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|167756890|ref|ZP_02429017.1| hypothetical protein CLORAM_02439 [Clostridium ramosum DSM 1402]
gi|237734600|ref|ZP_04565081.1| ribosomal biogenesis GTPase [Mollicutes bacterium D7]
gi|365832610|ref|ZP_09374141.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|374625647|ref|ZP_09698063.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
gi|167703065|gb|EDS17644.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium ramosum
DSM 1402]
gi|229382420|gb|EEO32511.1| ribosomal biogenesis GTPase [Coprobacillus sp. D7]
gi|365260189|gb|EHM90154.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|373915307|gb|EHQ47078.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
Length = 288
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+VIE+ DAR PLS+ +P+ ++ N+ R++V+ ++D+ + W YF +G I
Sbjct: 26 IDIVIELVDARAPLSSKNPMFNEICNNKPRLIVMTKKDLADSKATSKWIEYFKGKGIYAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + + K + + + +GL PRA+RA ++G PNVGKS+ INRL KR
Sbjct: 86 CVNLKNFNEYQLVIDVCKEILKEKMEREAKRGLKPRAMRAMVLGIPNVGKSTFINRLAKR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ + +R KD E D+PG++ + D A +A+ IG D+
Sbjct: 146 KATVTGNRPGVTKAQQIIRVDKDFELFDTPGVLWPKFDDLNVARNIAL---IGSIKQDIL 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+ + + + + T + NRY I +D
Sbjct: 203 PLDELFIYAVNYLETHYANIVCNRYNIIID 232
>gi|227513335|ref|ZP_03943384.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227524478|ref|ZP_03954527.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227083208|gb|EEI18520.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227088348|gb|EEI23660.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
Length = 290
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V EV DARIP ++ +P + + G + + +L ++D+ W F +G I
Sbjct: 26 VDIVFEVIDARIPYASQNPEVARITGEKPHLFILTKKDLADPRLTQRWLDSFKSKGQPAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + + + L S+ + KG+ R +RA VG PNVGKS+++NRL+ R
Sbjct: 86 AVDAKTKFNIGNVLSVISPLLSEKLAREEQKGMKKRPIRAISVGVPNVGKSTVLNRLVNR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+ +W++ GK+LE LD+PGI+ + Q A KLA+ I + +
Sbjct: 146 RAAQVGNRPGVTKGQQWLKAGKELELLDTPGILWPKFESQETANKLALTGAIKDSVFASD 205
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGK-----TFVQKLALHLFNGDTHQAA 234
D+A L L+ RY++ D D +K+ + D +A+
Sbjct: 206 DIALF---GLNHFRETNPGQLKERYRLSDSDFDLSDVDLLLVITEKIGMR---DDYERAS 259
Query: 235 FRILTDFRKGKFGWISLERPPR 256
RI+ D R K G +L+ P +
Sbjct: 260 NRIIQDIRGNKLGRFTLDDPEK 281
>gi|307709298|ref|ZP_07645756.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307619881|gb|EFN98999.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 283
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 106/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ A W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L ++ +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQVTVKVVTDAAKKLMANKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|19746107|ref|NP_607243.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS8232]
gi|94994427|ref|YP_602525.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10750]
gi|19748281|gb|AAL97742.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|94547935|gb|ABF37981.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|402574090|ref|YP_006623433.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
gi|402255287|gb|AFQ45562.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
Length = 275
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 7/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++ + LG++ R+L+LN+ D+ + + W Y + G V
Sbjct: 24 VDVVLELADARIPVSSRNPMLHKLLGSKARLLLLNKADLANPNWTSKWVKYLKESGP-VY 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G+G ++ + + ++ KG+ + +R IVG PN+GKSSLIN+L
Sbjct: 83 AVSATSGVGIKQIVPELERMVLAKQARQAEKGIRQQMIRVMIVGIPNIGKSSLINQLTGG 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +WVR + +E LD+PG++ + D KLA I + +D+
Sbjct: 143 AQAKVGNKPGVTRGNQWVRIHERVELLDTPGMLWPKFDDLEVGRKLAALGAIKDDVFDIE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQAAFRIL 238
+++ +++ + + RYKI ++ +K + G DT +AA L
Sbjct: 203 ELSTWVIEWFNQYSPDSLA----RYKISEPEVTLESIGRKRGCLIHGGRVDTLKAARIFL 258
Query: 239 TDFRKGKFGWISLER 253
D R G+ G I+++
Sbjct: 259 RDLRMGQLGSITMDH 273
>gi|422758930|ref|ZP_16812692.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411765|gb|EFY02673.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 102/172 (59%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYKSQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R++G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIQRLRNRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDI 172
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAI 196
>gi|51573469|gb|AAU07494.1| conserved hypothetical GTP-binding protein [Borrelia garinii PBi]
Length = 268
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
++V+E+ DAR P S+ +PL ++ + N+ +I++L++ D+ +A+ W YF G VI
Sbjct: 16 NIVLEILDARAPFSSKNPLTEKIIKNQTKIILLHKSDIAQIAEIIKWKKYFENLGNTVII 75
Query: 62 SN-GQLGMGTMKLSRLAK-ALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
SN + GM + + K A+ + N K + K L I+G PNVGKSS+IN L
Sbjct: 76 SNIYKKGMRKQIIDNIKKLAIVKKIKNYKEKIKVL--------IIGVPNVGKSSIINLLS 127
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
++ A +PG T+ ++ V+ +++ D PGI+ ++DQ+ A KLAI D I D
Sbjct: 128 GKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLADQSIAKKLAILDMIKNEIVD 187
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-----LHLFNGDTHQA 233
D+A L++++ + L +Y+I + +Q A +H N +
Sbjct: 188 NIDLALYLLEIMDQNNK---NILLKKYEIYHKNSLD--ILQNFAKARKLIHKKNELNLEK 242
Query: 234 AFRILT-DFRKGKFGWISLER 253
A +IL +FR+GKFG I L++
Sbjct: 243 ASKILIKEFREGKFGKIILDK 263
>gi|94544013|gb|ABF34061.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|21910353|ref|NP_664621.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS315]
gi|28895930|ref|NP_802280.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SSI-1]
gi|21904550|gb|AAM79424.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
gi|28811180|dbj|BAC64113.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELIADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|386362702|ref|YP_006072033.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
gi|350277111|gb|AEQ24479.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|386317016|ref|YP_006013180.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494750|ref|YP_006904596.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417928741|ref|ZP_12572129.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127303|gb|ADX24600.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|340766615|gb|EGR89141.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410439910|emb|CCI62538.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 199
>gi|339640338|ref|ZP_08661782.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339453607|gb|EGP66222.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
Length = 283
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVRIKEWQGYFEIQGIPTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 SINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDETVALKLALTGAIKDNLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V G+ + Y ++ + + + A + T + FR
Sbjct: 205 EVTIF-----------GLNYFKEHYPEELTARFKQLDLSQEAPDMIMDMTQKLGFRDDYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ D R GK G L+
Sbjct: 254 RFYSLFVKDVRDGKLGRYCLD 274
>gi|313888141|ref|ZP_07821815.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845831|gb|EFR33218.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 283
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 12/261 (4%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D VIE+ D+RIP S+ +PL D L N+KR+L+ N+ D+ + W + I
Sbjct: 24 VDFVIEIIDSRIPFSSRNPLFDDLLKNKKRLLIFNKSDLSDPKLNDLWMDRLTDENNFAI 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + +++ + +A ++ K KGL +RA IVG PN GKS+ IN +
Sbjct: 84 SYNAMKPNVGLVVNKSEELMAEEIK-KFEDKGLNKGPLRAMIVGIPNSGKSTFINSISGT 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R RPGVT+V +W++ L LD+PG++ + D+ + LA I + ++
Sbjct: 143 RSAKTGNRPGVTKVNQWIKIHPKLHLLDTPGVLWPKFQDK-VGLNLAFTGAIKD---EIM 198
Query: 181 DVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQA 233
D + ++++ ++ + ++L+ RYK+ D+ G + ++ L G D +
Sbjct: 199 DRETLALRLIEKLKEIAPSSLEERYKLQDIHDMTGIEIMDEIGSKRGALMRGGYIDYEKV 258
Query: 234 AFRILTDFRKGKFGWISLERP 254
+ IL +FRKG G I+LE P
Sbjct: 259 SGIILDEFRKGILGRITLEVP 279
>gi|417752384|ref|ZP_12400594.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus dysgalactiae subsp. equisimilis SK1249]
gi|333771839|gb|EGL48742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W Y+ QG K +
Sbjct: 10 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGIKTL 69
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK L +D + R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 70 AINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 129
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++
Sbjct: 130 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQ 184
>gi|345859699|ref|ZP_08812033.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
gi|344327156|gb|EGW38600.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
Length = 274
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 7/255 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DVV+E+ DARIP+S+ +P++D+ LGN+ RIL+LN+ D+ + W T + +
Sbjct: 24 VDVVLELADARIPISSRNPMLDKLLGNKPRILLLNKADLADTNWTSKWLTQL-RASSPAF 82
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ G G ++ + + +++ +KG+ P+ ++ IVG PN+GKSSLIN+L
Sbjct: 83 AVSATTGTGVKQIVPELERMVLAKQIRQANKGIRPQMIKVMIVGIPNIGKSSLINQLTGG 142
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVTR +WVR + +E LD+PG++ + KLA I + D+
Sbjct: 143 AQAKVGNKPGVTRGNQWVRIHERVELLDTPGMLWPKFEVPEVGQKLAALGAIKDDVLDIE 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQAAFRIL 238
+++ ++ L + RY+I +T +K + G DT +AA +L
Sbjct: 203 ELSLWIIDWLKAYSPDALL----RYQISDAEVTLETLGRKRGCLIHGGRVDTLKAAQILL 258
Query: 239 TDFRKGKFGWISLER 253
+ R G+ G I+++R
Sbjct: 259 RELRMGQLGPITMDR 273
>gi|227893502|ref|ZP_04011307.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
gi|227864672|gb|EEJ72093.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
Length = 279
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 1/255 (0%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+DV++EV DARIP S+ +P++++ +GN+ I++LN+ D+ WA + V+
Sbjct: 25 IDVLVEVLDARIPESSRNPMIEELVGNKPHIIILNKADLADPNLTKEWAKKLSGANKYVL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ KL L K +++ K ++G +R + G PN GKS++INRL+ R
Sbjct: 85 ALDSLHNTNMQKLISLVKKASAEKTKKLEARGASNPTIRIALAGIPNCGKSTVINRLVGR 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ +PGVT+ +W++ +++ LD+PGI+ + SDQ KLA I + +
Sbjct: 145 NVAEVGNKPGVTKGQRWLKTSANIQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHAD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL-FNGDTHQAAFRILT 239
DVA +++ L + + D++ + + D + + +L
Sbjct: 205 DVALFVLENLREHYLKNLVKFSKLNQSDIENLADADILLAMTEKYGMRDDYDRFSLFMLQ 264
Query: 240 DFRKGKFGWISLERP 254
RKG G I+L+RP
Sbjct: 265 RLRKGAIGRITLDRP 279
>gi|373464336|ref|ZP_09555875.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
gi|371762538|gb|EHO51067.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
Length = 292
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 4/256 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA--KQGTK 58
+D+V EV DARIP S+ +P + + ++ + ++ + D+ +W YF KQ
Sbjct: 26 VDIVFEVIDARIPYSSQNPEIKRISADKPHLFIMTKRDLADPKMTASWLRYFKEIKQPAI 85
Query: 59 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
I + Q G+ + +S ++ L + + + KG+ R +RA VG PNVGKS+++NRL+
Sbjct: 86 AIDAKTQFGINNV-ISVISPILKAKLQ-REEDKGMKKRPIRAISVGVPNVGKSTVLNRLV 143
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
RR RPGVT+ +W++ G LE LD+PGI+ + ++Q A KLA+ I + +
Sbjct: 144 NRRAAQVGNRPGVTKGQQWLKSGSKLELLDTPGILWPKFANQEIANKLALTGAIKDSVFH 203
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 238
D+A + +L + + + + D D + ++ A + D +A+ RI+
Sbjct: 204 SDDIALFALNLLRQSQPQQLQQRYHLAEDDFDLSDVDLLLKITAKIGMHDDYERASNRII 263
Query: 239 TDFRKGKFGWISLERP 254
D R GK G +L+ P
Sbjct: 264 QDVRSGKVGPYTLDNP 279
>gi|347538290|ref|YP_004845714.1| ribosome biogenesis GTP-binding protein YlqF [Pseudogulbenkiania
sp. NH8B]
gi|345641467|dbj|BAK75300.1| ribosome biogenesis GTP-binding protein YlqF [Pseudogulbenkiania
sp. NH8B]
Length = 311
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF-AKQGTKV 59
+DVVIE+ DAR+P S+ +P++ + + + +LN++D+ A W Y+ +K GT+
Sbjct: 24 IDVVIEMLDARLPASSANPMIARMTRGKPALKILNKQDLADPAITQVWLDYYCSKPGTRA 83
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
I + KL +ALA + +G L + +R I G PNVGKS+LIN L
Sbjct: 84 IALDAGERAPVTKLVSACRALAPN-------RGGLEKPLRVLICGIPNVGKSTLINSLAG 136
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
RR+ PG+T+ + + D E +D+PG++ +I + LA +G + D
Sbjct: 137 RRIAKTGNEPGITKGQQRILLADDFELVDTPGMLWPKIEVEEGGYNLAASGAVGRNALDE 196
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQ 232
+V L++ L + T T LQ RY + D++G ++++ + G + +
Sbjct: 197 EEVVLELLRYLMKHYT---TLLQERYNVGDIEGWQDFEVLEQIGRRRGAMLGGGRVNIQK 253
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +LTDFR G G I+LERP
Sbjct: 254 AAEIVLTDFRAGSIGPITLERP 275
>gi|342163784|ref|YP_004768423.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
gi|341933666|gb|AEL10563.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++L+LN+ D+ W YF QG + +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPVMTKEWRQYFESQGIQTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + + ++ AK L +D +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 TINSKEQVTVKVVTDAAKKLMADKIARQKGRGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGER 175
++ +PG+T+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I ++
Sbjct: 145 KIAVVGNKPGITKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQ 199
>gi|169350422|ref|ZP_02867360.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
gi|169292742|gb|EDS74875.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
spiroforme DSM 1552]
Length = 288
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 3/210 (1%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V+E+ DAR PLS+ +P+ DQ N+ R++V+ ++D+ W YF + I
Sbjct: 26 IDIVVELVDARAPLSSKNPMFDQICNNKPRLIVMTKKDLADDKVTALWIEYFKSKNLHAI 85
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + ++ + K + + + +GL RA+RA I+G PNVGKS+ INRL KR
Sbjct: 86 CVNLKNFNEYQQVINVCKEILKEKMEREAKRGLKSRAMRAMILGIPNVGKSTFINRLAKR 145
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPGVT+ + +R KD E D+PG++ R D A +A+ IG D+
Sbjct: 146 KATVTGNRPGVTKAQQIIRVDKDFELFDTPGVLWPRFEDINIARNIAL---IGSIKQDIL 202
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMD 210
+ + + + + +++ RY I++D
Sbjct: 203 PLDELFIYAIEYLEKTYPNSVKKRYDIEID 232
>gi|418964799|ref|ZP_13516587.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344200|gb|EID22369.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 131/261 (50%), Gaps = 20/261 (7%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + + ++ ++L+LN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVSDKPKLLILNKADLADSDVTKEWRRYFESQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + D+ A+KLA+ I + +
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEDEKVALKLALTGAIKDDLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFR---- 236
+V GI + Y ++ + +++ A + T + FR
Sbjct: 205 EVTIF-----------GINYFKEHYPKELRERFKQIDLKEEAPEIIMDMTQKLGFRDNYD 253
Query: 237 -----ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 254 RFYQLFIKEIRDGKVGRYTLD 274
>gi|424787770|ref|ZP_18214534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
gi|422113524|gb|EKU17262.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 6/254 (2%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+P S+ +P++ + +G++ ++LVLN+ D+ W YF QG K +
Sbjct: 25 VDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKADLADAHLTKEWRRYFENQGIKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ AK+L + +++ +G+ +R I+G PN GKS+L+NRL
Sbjct: 85 AINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRTMIIGIPNAGKSTLMNRLAGE 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ KDLE LD+PGI+ + + A+KLA+ I + +
Sbjct: 145 KIAVTGNKPGVTKGQQWLKSNKDLEILDTPGILWPKFEEADIALKLALTGAIKDDLLPMD 204
Query: 181 DVAAILVQML-ARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRI-L 238
+VA + P T LQ R+K + + L D + +++ +
Sbjct: 205 EVAIFGINYFKEHYP----TELQERFKAMNLKDEAPEIIMDMTQKLGFRDNYDRFYQLFI 260
Query: 239 TDFRKGKFGWISLE 252
+ R GK G +L+
Sbjct: 261 KEIRDGKVGRYTLD 274
>gi|224826993|ref|ZP_03700091.1| GTP-binding protein HSR1-related [Pseudogulbenkiania ferrooxidans
2002]
gi|224600826|gb|EEG07011.1| GTP-binding protein HSR1-related [Pseudogulbenkiania ferrooxidans
2002]
Length = 311
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 18/262 (6%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF-AKQGTKV 59
+DVVIE+ DAR+P S+ +P++ + + + +LN++D+ A W Y+ +K GT+
Sbjct: 24 IDVVIEMLDARLPASSANPMIARMTRGKPALKILNKQDLADPAITQVWLDYYCSKPGTRA 83
Query: 60 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 119
I + KL +ALA + +G L + +R I G PNVGKS+LIN L
Sbjct: 84 IALDAGERAPVTKLVSACRALAPN-------RGGLEKPLRVLICGIPNVGKSTLINSLAG 136
Query: 120 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 179
RR+ PG+T+ + + D E +D+PG++ +I + LA +G + D
Sbjct: 137 RRIAKTGNEPGITKGQQRILLADDFELVDTPGMLWPKIEVEEGGYNLAASGAVGRNALDE 196
Query: 180 ADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTFVQKLALH---LFNG---DTHQ 232
+V L++ L + T T LQ RY + D++G ++++ + G + +
Sbjct: 197 EEVVLELLRYLMKHYT---TLLQERYNVGDIEGWQDFEVLEQIGRRRGAMLGGGRVNIQK 253
Query: 233 AAFRILTDFRKGKFGWISLERP 254
AA +LTDFR G G I+LERP
Sbjct: 254 AAEIVLTDFRAGSIGPITLERP 275
>gi|408671252|ref|YP_006871323.1| ribosomal biogenesis GTPase [Borrelia garinii NMJW1]
gi|407241074|gb|AFT83957.1| ribosomal biogenesis GTPase [Borrelia garinii NMJW1]
Length = 268
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 61
++V+E+ DAR P S+ +PL ++ + N+ +I++L++ D+ +A+ W YF G VI
Sbjct: 16 NIVLEILDARAPFSSKNPLTEKIIKNQAKIILLHKSDIAQIAEIIKWKKYFENLGNTVII 75
Query: 62 SN-GQLGMGTMKLSRLAK-ALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 118
SN + GM + + K A+ + N K + K L I+G PNVGKSS+IN L
Sbjct: 76 SNIYKKGMRKQIIDNIKKLAIVKKIKNYKEKIKVL--------IIGVPNVGKSSIINLLS 127
Query: 119 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 178
++ A +PG T+ ++ V+ +++ D PGI+ ++DQ+ A KLAI D I D
Sbjct: 128 GKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLADQSIAKKLAILDMIKNEIVD 187
Query: 179 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA-----LHLFNGDTHQA 233
D+A L++++ + L +Y+I + +Q A +H N +
Sbjct: 188 NIDLALYLLEIMDQNNK---NILLKKYEIYHKNSLD--ILQNFAKARKLIHKKNELNLEK 242
Query: 234 AFRILT-DFRKGKFGWISLER 253
A +IL +FR+GKFG I L++
Sbjct: 243 ASKILIKEFREGKFGKIILDK 263
>gi|25011102|ref|NP_735497.1| ribosomal biogenesis GTPase [Streptococcus agalactiae NEM316]
gi|76798265|ref|ZP_00780513.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77410513|ref|ZP_00786874.1| GTP-binding protein [Streptococcus agalactiae CJB111]
gi|77413767|ref|ZP_00789948.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|23095501|emb|CAD46707.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586376|gb|EAO62886.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77160196|gb|EAO71326.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|77163461|gb|EAO74411.1| GTP-binding protein [Streptococcus agalactiae CJB111]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 135/256 (52%), Gaps = 10/256 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D V + DAR+PLS+ +P++ + +G++ ++++LN+ D+ W ++ QG K +
Sbjct: 25 VDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADPIRTKEWRDFYESQGLKTL 84
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N + K++ +AK L SD K R +G+ +R I+G PN GKS+L+NRL +
Sbjct: 85 AINSKEQSTVKKVTDIAKILMSDKIAKLRGRGIQKETLRTMIIGIPNAGKSTLMNRLAGK 144
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
++ +PGVT+ +W++ K+LE LD+PGI+ + D+ +KLA+ I ++ +
Sbjct: 145 KIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMD 204
Query: 181 DVAAILVQMLARIPTVGITALQNRYK-IDMDGTCGK---TFVQKLALHLFNGDTHQAAFR 236
+V + L T L+ R+K I+++ + QKL + D +
Sbjct: 205 EVT---IFGLNYFKTYYPDRLKERFKSINLEDEAPEIIMALTQKLG---YRDDYDRFYNL 258
Query: 237 ILTDFRKGKFGWISLE 252
+ + R GK G +L+
Sbjct: 259 FVKEVRDGKLGRYTLD 274
>gi|363899265|ref|ZP_09325775.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|395209656|ref|ZP_10398750.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
gi|361959102|gb|EHL12398.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|394705287|gb|EJF12816.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
Length = 292
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 131/261 (50%), Gaps = 10/261 (3%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D +IEV D+R P S+ +P +D ++ RI++ N+ D+ A ++ F KQG +
Sbjct: 24 VDAIIEVIDSRCPNSSRNPEIDILAKDKARIMLFNKADLADPARTKSFMESFRKQGFYTM 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
+ + +S+L +++ +++ KG+L ++++A ++G PNVGKS+ IN + +
Sbjct: 84 EMDARSRSSVKGVSKLVMESCAELLERKKQKGILSQSIKAMVLGIPNVGKSTFINAYVGK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+PGVT+ +W++ GKDL+ LD+PGI + + + LA+ I + +
Sbjct: 144 ATAKTGNKPGVTKGAQWIKIGKDLQLLDTPGITWPKFEREIVGLNLALIGSINDEILPIE 203
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDG-----TCGKTFVQKLALHLFNGDTHQAAF 235
++ L++ L R +AL +RY + G K A GD
Sbjct: 204 ELIFYLLKYLTRYYG---SALVSRYGETLQGKEDALEAMDAIAVKRACIKKGGDIDYTKV 260
Query: 236 R--ILTDFRKGKFGWISLERP 254
IL DFR G+ G ISLE P
Sbjct: 261 SRLILDDFRSGRLGRISLEHP 281
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,926,057,986
Number of Sequences: 23463169
Number of extensions: 152977289
Number of successful extensions: 550668
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6786
Number of HSP's successfully gapped in prelim test: 5201
Number of HSP's that attempted gapping in prelim test: 534388
Number of HSP's gapped (non-prelim): 16525
length of query: 256
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 117
effective length of database: 9,097,814,876
effective search space: 1064444340492
effective search space used: 1064444340492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)