BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025200
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D A W +F QG + +
Sbjct: 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
N G G ++ +K + + + R+KG+ PRA+RA I+G PNVGKS+LINRL K+
Sbjct: 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
+ RPG+T +WV+ GK+LE LD+PGI+ + D+ ++LA+ I + ++
Sbjct: 144 NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQ 203
Query: 181 DVAAILVQMLAR-IPTVGITALQNRYKID--------MDGTCGKTFVQKLALHLFNGDTH 231
DVA ++ L P L+ RY +D + G+ ++ L N D
Sbjct: 204 DVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 259
Query: 232 QAAFRILTDFRKGKFGWISLERP 254
I+ D R KFG +S E+P
Sbjct: 260 TEV--IIRDIRTEKFGRLSFEQP 280
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 31/256 (12%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 60
++ V+EVRDAR P +T+ +D ++ I++LN+ D+ W +F KQG +VI
Sbjct: 22 VNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVI 79
Query: 61 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 120
++ K V +K+ S R R IVG PN GKS++IN+L +
Sbjct: 80 TTH--------------KGEPRKVLLKKLS---FDRLARVLIVGVPNTGKSTIINKLKGK 122
Query: 121 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 180
R +PG+T+ ++W ++ LD+PGI+ I + A KL + + +
Sbjct: 123 RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAAKLLLVGSLPVERIEDQ 182
Query: 181 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNG--DTHQAAFRIL 238
+ ++ AR ++GI + + + D F +K L G D +A
Sbjct: 183 RIFERAFEIFAR--SIGIESSFSEFFED--------FARKRGLLKKGGVPDIERALMLFF 232
Query: 239 TDFRKGKFGWISLERP 254
T+ +GK G +S ERP
Sbjct: 233 TEVAQGKAGRVSFERP 248
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 136
IVG PNVGKSSL NRLLK+R A PGVTR LK
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 92 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFG 141
GL+PR G IVG PNVGKS++ NR+ R+ PGVTR +W+ +
Sbjct: 13 GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY- 71
Query: 142 KDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ 188
D +D+ GI I D+ LA E + D ADV +V
Sbjct: 72 -DFNLIDTGGI---DIGDEPF---LAQIRQQAEIAMDEADVIIFMVN 111
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 133
++G PNVGKSSL+N +L + G TR
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTR 231
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 155
IVG PNVGKS+L+N LL ++ +P+ G TR+ +K + + FLD+PGI
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 156 RISDQAAAIKLAICDDIGERSYDVADVAAILV 187
+ SD + +I ++S + ADV ++
Sbjct: 72 KKSDVLGHSMV----EIAKQSLEEADVILFMI 99
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 155
IVG PNVGKS+L+N LL ++ +P+ G TR+ +K + + FLD+PGI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 156 RISDQAAAIKLAICDDIGERSYDVADVAAILV 187
+ SD + +I ++S + ADV ++
Sbjct: 73 KKSDVLGHSMV----EIAKQSLEEADVILFMI 100
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 152
IVG PNVGKS+L+N LL ++ P +PRP TR +L R + + F+D+PG+
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGL 65
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 19 PLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAKQ-GTK---VIFSNGQLGMGT 70
P + +++GN K +LV N+ D+I + ++ W Y AKQ G K V + G G
Sbjct: 88 PGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGI 147
Query: 71 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK------RRMCP 124
+L A + R K + +VG NVGKS+ INR +K +
Sbjct: 148 AEL-------ADAIEYYRGGKDVY-------VVGCTNVGKSTFINRXIKEFSDETENVIT 193
Query: 125 AAPRPGVTRVLKWVRFGKDLEFLDSPGII 153
+ PG T L + ++ D+PGII
Sbjct: 194 TSHFPGTTLDLIDIPLDEESSLYDTPGII 222
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 67 GMGTMKLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 125
G +L R+ + L ++ K+ G LL R +R IVG PNVGKS+L+NRLL
Sbjct: 214 GEVVTRLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIV 271
Query: 126 APRPGVTR 133
PG TR
Sbjct: 272 TDIPGTTR 279
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 71 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRP 129
MK+++ ++ + S V ++ +G LP + G NVGKSS IN L+ R+ + + +P
Sbjct: 1 MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56
Query: 130 GVTRVLKWVRFGKDLEFLDSPG 151
G T+ L + +L F+D PG
Sbjct: 57 GKTQTLNFYIINDELHFVDVPG 78
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 89 RSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 133
SK + A++ IVG PNVGKS+L N +L + +P PG TR
Sbjct: 172 ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGII 153
IVG PNVGKS+L N+L+K++ GVTR ++W +GK + +D+ G+
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW--YGKTFKLVDTCGVF 60
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 89 RSKGLLPRAVRAGI--VGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 146
R+ G P ++ + VG NVGKSSL+N L R++ + PG TR + + F
Sbjct: 13 RTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYF 72
Query: 147 LDSPGIIPMRISDQAAAIKLAICDD 171
+D PG ++S + + + +D
Sbjct: 73 VDLPGYGYAKVSKKERMLWKRLVED 97
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 152
IVG PNVGKS++ NR+ R+ PGVTR +W+ + D +D+ GI
Sbjct: 7 AIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGI 61
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 133
++G PNVGKSSL+N L + G TR
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTR 211
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 89 RSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFGKDL 144
+ KG LL ++ IVG PNVGKSSL+N + PG TR + + V G +
Sbjct: 215 KDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV 274
Query: 145 EFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILV 187
+ LD+ GI SDQ I + ERS A+ A +++
Sbjct: 275 QVLDTAGI--RETSDQVEKIGV-------ERSRQAANTADLVL 308
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPMR-I 157
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPY 65
Query: 158 SDQAAAIKLAICDDIGERSYDVADVAAIL--VQMLARIPTVGITALQNRYKID-MDGTCG 214
S +A + + + +V D + + + ++ GI ID +DG
Sbjct: 66 SPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125
Query: 215 KTFVQKLALHL 225
K V KL+ HL
Sbjct: 126 KINVDKLSYHL 136
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPMRIS 158
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M S
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM--S 63
Query: 159 DQAAAIKLAICDDIGERSYDVADVAAIL-----VQMLARIPTVGITALQNRYKID-MDGT 212
+ A K+A + +R+ + +V + + ++ GI ID +DG
Sbjct: 64 PYSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQ 123
Query: 213 CGKTFVQKLALHL 225
K V KL+ HL
Sbjct: 124 GKKINVDKLSYHL 136
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPMR-I 157
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPY 65
Query: 158 SDQAAAIKLAICDDIGERSYDVADVAAIL--VQMLARIPTVGITALQNRYKID-MDGTCG 214
S + + + + +V D + + + ++ GI ID +DG
Sbjct: 66 SPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125
Query: 215 KTFVQKLALHL 225
K V KL+ HL
Sbjct: 126 KINVDKLSYHL 136
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDSPGIIPMRIS 158
I G PN GKSSL+N L R G TR VL+ G L +D+ G+ S
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL--REAS 66
Query: 159 DQAAAIKLA-----------ICDDIGERSYDVADVAAILVQMLARIPT-VGITALQNRYK 206
D+ I + + + + D D A I + +AR+P + IT ++N+
Sbjct: 67 DEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126
Query: 207 IDMDGTCGKTFVQKLAL 223
I + T G + V AL
Sbjct: 127 ITGE-TLGXSEVNGHAL 142
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 79 ALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR--RMCPA-----APRPGV 131
A A + KRR + L G+VGYPN GKSSL+ + + ++ P +P GV
Sbjct: 139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV 198
Query: 132 TRVLKWVRFGKDLEFLDSPGII 153
V + RF D PGII
Sbjct: 199 VEVSEEERF----TLADIPGII 216
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 93 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDS 149
LL ++ I G PN GKSSL+N L R G TR VL+ G L +D+
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 150 PGIIPM-----RISDQAAAIKLAICDD----IGERSYDVADVAAILVQMLARIPT-VGIT 199
G+ RI + A ++ D + + D D A I + +AR+P + IT
Sbjct: 63 AGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT 122
Query: 200 ALQNRYKIDMDGTCGKTFVQKLAL 223
++N+ I + T G + V AL
Sbjct: 123 VVRNKADITGE-TLGMSEVNGHAL 145
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 72 KLSRLAKALASDVN--VKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR 128
+L+ + L S+VN + G ++ V I G PN GKS+L+N LL + +
Sbjct: 205 ELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM 264
Query: 129 PGVTR 133
PG TR
Sbjct: 265 PGTTR 269
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPMR-I 157
++G PN GK+SL N L+ PGV+ R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGIYSMSPY 65
Query: 158 SDQAAAIKLAICDDIGERSYDVADVAAIL--VQMLARIPTVGITALQNRYKID-MDGTCG 214
S + + + + +V D + + + ++ GI ID +DG
Sbjct: 66 SPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125
Query: 215 KTFVQKLALHL 225
K V KL+ HL
Sbjct: 126 KINVDKLSYHL 136
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 133
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 133
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 41
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 101 GIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR-IS 158
++G PN GK+SL N + + P V R V+ KDLE D PGI M S
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGIYSMSPYS 66
Query: 159 DQAAAIKLAICDDIGERSYDVADVAAIL--VQMLARIPTVGITALQNRYKID-MDGTCGK 215
+ + + + +V D + + + ++ GI ID +DG K
Sbjct: 67 PEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKK 126
Query: 216 TFVQKLALHL 225
V KL+ HL
Sbjct: 127 INVDKLSYHL 136
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDSPGIIPM--- 155
I G PN GKSSL+N L R G TR VL+ G L +D+ G+
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68
Query: 156 --RISDQAAAIKLAICDD----IGERSYDVADVAAILVQMLARIPT-VGITALQNRYKID 208
RI + A ++ D + + D D A I + +AR+P + IT ++N+ I
Sbjct: 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128
Query: 209 MDGTCGKTFVQKLAL 223
+ T G + V AL
Sbjct: 129 GE-TLGMSEVNGHAL 142
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 99 RAGIVGYPNVGKSSLINRLLKRRM-------CPAAPRPGV 131
+ GIVG PNVGKS+L N L K + C P GV
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV 43
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 101 GIVGYPNVGKSSLINRLL-------KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153
G VG+P+VGKS+L+++L + PGV R G ++ LD PGII
Sbjct: 76 GFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-----GAKIQMLDLPGII 130
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPMR-I 157
++G P GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPASGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPY 65
Query: 158 SDQAAAIKLAICDDIGERSYDVADVAAIL--VQMLARIPTVGITALQNRYKID-MDGTCG 214
S + + + + +V D + + + ++ GI ID +DG
Sbjct: 66 SPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125
Query: 215 KTFVQKLALHL 225
K V KL+ HL
Sbjct: 126 KINVDKLSYHL 136
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 155 MRIS 158
+ S
Sbjct: 65 LGYS 68
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 155 MRIS 158
+ S
Sbjct: 65 LGYS 68
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 155 MRIS 158
+ S
Sbjct: 65 LGYS 68
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
Query: 153 IPM 155
+
Sbjct: 62 YSL 64
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
Query: 153 IPM 155
+
Sbjct: 65 YSL 67
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 153 IPM 155
+
Sbjct: 61 YSL 63
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 153 IPM 155
+
Sbjct: 61 YSL 63
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDS 149
+PR+ I+G+ + GK++L+++L K ++ A G+T+ L + G+ + FLD+
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDT 59
Query: 150 PG 151
PG
Sbjct: 60 PG 61
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKD---LEFLDSPGIIPMRIS 158
I G+PNVGKS+L+ L + A P TR + +F + +D+PG++ IS
Sbjct: 172 IAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS 230
Query: 159 DQAAAIKLAIC 169
++ K AI
Sbjct: 231 ERNEIEKQAIL 241
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 102 IVGYPNVGKSSLINRLL-----KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153
+VG NVGKS+ INR++ K + + PG T + + D+PGII
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 101 GIVGYPNVGKSSLINRLLK 119
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 101 GIVGYPNVGKSSLINRLLK 119
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 96 RAVRAGIVGYPNVGKSSLINRL 117
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 96 RAVRAGIVGYPNVGKSSLINRL 117
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 92 GLLPRAVRAGIVGYPNVGKSSLINRL 117
G +++ GIVG PNVGKS+ N L
Sbjct: 17 GRFGTSLKIGIVGLPNVGKSTFFNVL 42
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 37/175 (21%)
Query: 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATY 51
+D VI V ++P ++T+ ++D++L + ++V+N+ D+ D R Y
Sbjct: 85 VDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY 143
Query: 52 FAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKS 111
++ ++ + GMG +L K S + AG+ G VGKS
Sbjct: 144 SGLY--PIVKTSAKTGMGIEELKEYLKGKISTM---------------AGLSG---VGKS 183
Query: 112 SLINRL---LKRRMCPAAPR----PGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 159
SL+N + LK R+ + + T + ++F +D+PG + I+D
Sbjct: 184 SLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIND 238
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 132
++ GIVG PNVGKS+ + K + A P T
Sbjct: 21 LKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYAT 55
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 64 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 107
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 108 VGKSSLINRL 117
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 64 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 107
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 108 VGKSSLINRL 117
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 64 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 107
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 108 VGKSSLINRL 117
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 97 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 151
+ G N GKSS +N L ++ + + PG T+++ +D PG
Sbjct: 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRFGKDLEFL--DSPGI 152
+VG PNVGK+++ N L R PGVT K + ++ EFL D PGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,286,928
Number of Sequences: 62578
Number of extensions: 274809
Number of successful extensions: 980
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 61
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)