Query 025200
Match_columns 256
No_of_seqs 316 out of 3085
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.9E-53 4.1E-58 372.2 32.0 253 1-256 25-283 (287)
2 TIGR03596 GTPase_YlqF ribosome 100.0 3.2E-52 7E-57 362.6 31.4 249 1-252 22-276 (276)
3 KOG2484 GTPase [General functi 100.0 3.6E-49 7.9E-54 344.8 19.5 243 1-252 147-404 (435)
4 COG1161 Predicted GTPases [Gen 100.0 3.1E-47 6.8E-52 337.0 25.3 252 1-255 35-299 (322)
5 KOG2423 Nucleolar GTPase [Gene 100.0 3.5E-44 7.6E-49 312.6 18.7 233 1-250 214-457 (572)
6 KOG1424 Predicted GTP-binding 100.0 6.6E-41 1.4E-45 300.8 22.2 243 1-255 175-476 (562)
7 KOG2485 Conserved ATP/GTP bind 100.0 8.9E-39 1.9E-43 272.5 22.5 246 1-252 47-321 (335)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 1.4E-32 3.1E-37 220.0 17.5 144 1-152 9-157 (157)
9 cd04178 Nucleostemin_like Nucl 100.0 1.9E-32 4.2E-37 222.2 17.9 143 2-152 1-172 (172)
10 cd01849 YlqF_related_GTPase Yl 100.0 3.2E-31 7E-36 211.8 18.9 151 2-152 1-155 (155)
11 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 3.3E-30 7E-35 202.9 16.3 126 1-155 12-141 (141)
12 cd01856 YlqF YlqF. Proteins o 100.0 1.9E-29 4.2E-34 204.7 19.3 152 1-153 20-171 (171)
13 cd01859 MJ1464 MJ1464. This f 100.0 1.5E-27 3.3E-32 190.5 18.2 142 1-152 13-156 (156)
14 cd01855 YqeH YqeH. YqeH is an 100.0 1.9E-27 4.1E-32 196.1 15.8 139 1-152 35-190 (190)
15 PRK13796 GTPase YqeH; Provisio 99.9 5.1E-26 1.1E-30 205.1 15.7 177 3-193 72-265 (365)
16 PRK12289 GTPase RsgA; Reviewed 99.9 7.7E-26 1.7E-30 202.0 16.0 139 1-158 90-240 (352)
17 TIGR03597 GTPase_YqeH ribosome 99.9 1.3E-25 2.9E-30 202.1 16.5 141 1-155 64-217 (360)
18 COG1160 Predicted GTPases [Gen 99.9 3.7E-25 8E-30 198.5 14.1 150 1-155 84-239 (444)
19 TIGR00157 ribosome small subun 99.9 9.2E-25 2E-29 186.9 15.3 139 1-159 37-188 (245)
20 PRK12288 GTPase RsgA; Reviewed 99.9 6.7E-23 1.5E-27 183.1 16.6 138 1-158 121-273 (347)
21 PRK00098 GTPase RsgA; Reviewed 99.9 1.2E-22 2.6E-27 178.6 15.5 138 1-157 81-231 (298)
22 cd01854 YjeQ_engC YjeQ/EngC. 99.9 3E-22 6.6E-27 175.2 15.8 137 1-156 79-227 (287)
23 PRK03003 GTP-binding protein D 99.9 1.1E-20 2.3E-25 176.1 14.6 148 1-154 118-271 (472)
24 PRK00093 GTP-binding protein D 99.8 3E-20 6.5E-25 171.6 15.6 149 1-156 81-235 (435)
25 TIGR03594 GTPase_EngA ribosome 99.8 3.8E-20 8.3E-25 170.5 15.0 149 1-155 79-233 (429)
26 PRK09518 bifunctional cytidyla 99.8 7.5E-20 1.6E-24 178.0 15.5 150 1-154 355-510 (712)
27 COG1162 Predicted GTPases [Gen 99.8 2.7E-19 5.8E-24 154.4 15.8 138 1-157 80-231 (301)
28 PRK01889 GTPase RsgA; Reviewed 99.8 2.3E-18 5E-23 154.8 13.6 141 1-161 113-266 (356)
29 PF03193 DUF258: Protein of un 99.7 2.8E-16 6E-21 125.2 8.4 95 46-158 2-103 (161)
30 PF02421 FeoB_N: Ferrous iron 99.6 1.3E-15 2.9E-20 121.1 7.4 61 98-159 1-64 (156)
31 COG1084 Predicted GTPase [Gene 99.6 3.8E-15 8.2E-20 129.0 10.5 68 93-161 164-234 (346)
32 COG0486 ThdF Predicted GTPase 99.5 2.8E-14 6.1E-19 129.0 8.9 62 94-155 214-278 (454)
33 COG1159 Era GTPase [General fu 99.5 2.8E-14 6.2E-19 122.4 7.1 59 98-156 7-68 (298)
34 COG0218 Predicted GTPase [Gene 99.5 6.4E-14 1.4E-18 114.2 6.7 62 97-158 24-86 (200)
35 PF01926 MMR_HSR1: 50S ribosom 99.5 1E-13 2.2E-18 104.9 6.8 58 99-156 1-61 (116)
36 COG1160 Predicted GTPases [Gen 99.5 7.3E-14 1.6E-18 126.0 6.8 59 98-156 4-65 (444)
37 KOG1191 Mitochondrial GTPase [ 99.4 9.1E-13 2E-17 119.4 7.7 59 96-154 267-328 (531)
38 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 4.8E-12 1E-16 104.7 8.4 60 98-157 1-64 (196)
39 TIGR00436 era GTP-binding prot 99.3 3.1E-12 6.6E-17 111.2 7.1 57 99-155 2-61 (270)
40 TIGR03156 GTP_HflX GTP-binding 99.3 1.3E-11 2.9E-16 110.9 11.0 58 96-154 188-249 (351)
41 KOG1423 Ras-like GTPase ERA [C 99.3 4.4E-12 9.6E-17 109.0 6.4 62 95-156 70-134 (379)
42 cd01853 Toc34_like Toc34-like 99.3 9.9E-12 2.1E-16 106.6 8.1 62 95-156 29-93 (249)
43 PRK12298 obgE GTPase CgtA; Rev 99.3 5.9E-12 1.3E-16 114.5 6.8 57 99-156 161-221 (390)
44 PTZ00258 GTP-binding protein; 99.3 1.2E-11 2.5E-16 111.9 7.4 59 96-155 20-98 (390)
45 PRK09601 GTP-binding protein Y 99.2 1.2E-11 2.5E-16 110.8 6.8 57 98-155 3-79 (364)
46 cd01900 YchF YchF subfamily. 99.2 1.2E-11 2.5E-16 107.3 6.0 55 100-155 1-75 (274)
47 PRK05291 trmE tRNA modificatio 99.2 4.5E-11 9.8E-16 110.9 10.0 59 96-154 214-275 (449)
48 COG0370 FeoB Fe2+ transport sy 99.2 1.7E-10 3.6E-15 108.9 13.5 59 97-156 3-64 (653)
49 COG1163 DRG Predicted GTPase [ 99.2 7.4E-11 1.6E-15 102.3 10.1 60 95-155 61-123 (365)
50 TIGR03598 GTPase_YsxC ribosome 99.2 3.8E-11 8.2E-16 97.8 7.9 60 96-155 17-77 (179)
51 KOG1490 GTP-binding protein CR 99.2 1.1E-11 2.4E-16 112.5 4.7 74 94-168 165-241 (620)
52 PRK00454 engB GTP-binding prot 99.2 4.6E-11 9.9E-16 98.2 7.4 60 96-155 23-83 (196)
53 TIGR00991 3a0901s02IAP34 GTP-b 99.2 7.8E-11 1.7E-15 103.1 9.0 60 96-155 37-99 (313)
54 PRK11058 GTPase HflX; Provisio 99.2 1.1E-10 2.3E-15 107.5 9.7 56 98-154 198-257 (426)
55 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1E-10 2.2E-15 108.2 9.4 61 95-155 201-264 (442)
56 PRK15494 era GTPase Era; Provi 99.1 1.3E-10 2.8E-15 104.1 8.8 60 96-155 51-113 (339)
57 PRK04213 GTP-binding protein; 99.1 1E-10 2.2E-15 96.8 7.2 56 96-153 8-63 (201)
58 COG2262 HflX GTPases [General 99.1 2.3E-10 4.9E-15 102.3 9.6 114 95-209 190-316 (411)
59 PRK00089 era GTPase Era; Revie 99.1 1E-10 2.2E-15 102.6 7.1 60 97-156 5-67 (292)
60 TIGR03594 GTPase_EngA ribosome 99.1 8.4E-11 1.8E-15 108.5 6.2 56 99-154 1-59 (429)
61 PRK12299 obgE GTPase CgtA; Rev 99.1 1.3E-10 2.9E-15 103.7 7.1 57 98-155 159-219 (335)
62 PRK12297 obgE GTPase CgtA; Rev 99.1 1.5E-10 3.3E-15 106.1 7.1 55 99-154 160-218 (424)
63 PRK12296 obgE GTPase CgtA; Rev 99.1 1.5E-10 3.3E-15 107.7 6.4 57 98-155 160-219 (500)
64 KOG1489 Predicted GTP-binding 99.1 2.1E-10 4.6E-15 99.2 5.6 56 99-155 198-257 (366)
65 PF04548 AIG1: AIG1 family; I 99.1 3.6E-10 7.9E-15 94.7 6.8 63 98-160 1-67 (212)
66 cd01898 Obg Obg subfamily. Th 99.0 3E-10 6.5E-15 90.9 5.8 55 99-154 2-60 (170)
67 cd04164 trmE TrmE (MnmE, ThdF, 99.0 5.1E-10 1.1E-14 87.9 6.7 58 98-155 2-62 (157)
68 TIGR00993 3a0901s04IAP86 chlor 99.0 1E-09 2.2E-14 103.9 9.6 62 96-157 117-181 (763)
69 PRK03003 GTP-binding protein D 99.0 5.7E-10 1.2E-14 104.3 7.8 58 97-154 38-98 (472)
70 COG0536 Obg Predicted GTPase [ 99.0 7.5E-10 1.6E-14 96.8 7.6 56 99-155 161-220 (369)
71 PRK09602 translation-associate 99.0 5.4E-10 1.2E-14 101.9 7.0 57 98-155 2-85 (396)
72 cd01897 NOG NOG1 is a nucleola 99.0 6.5E-10 1.4E-14 88.9 6.7 55 99-154 2-59 (168)
73 TIGR02729 Obg_CgtA Obg family 99.0 4.7E-10 1E-14 100.1 6.1 57 98-155 158-218 (329)
74 PRK00093 GTP-binding protein D 99.0 5.6E-10 1.2E-14 103.2 6.8 57 98-154 2-61 (435)
75 cd01878 HflX HflX subfamily. 99.0 2.9E-09 6.2E-14 88.3 10.3 59 96-155 40-102 (204)
76 cd01895 EngA2 EngA2 subfamily. 99.0 7.5E-10 1.6E-14 88.2 6.6 59 97-155 2-63 (174)
77 cd04163 Era Era subfamily. Er 99.0 1.1E-09 2.5E-14 86.3 7.4 60 97-156 3-65 (168)
78 PRK09554 feoB ferrous iron tra 99.0 8.9E-10 1.9E-14 108.0 7.9 58 97-155 3-63 (772)
79 cd01894 EngA1 EngA1 subfamily. 99.0 7E-10 1.5E-14 87.2 5.0 55 101-155 1-58 (157)
80 cd01896 DRG The developmentall 99.0 1.6E-09 3.4E-14 92.2 7.0 56 99-155 2-60 (233)
81 cd01879 FeoB Ferrous iron tran 99.0 1.6E-09 3.4E-14 85.5 6.5 53 102-155 1-56 (158)
82 PRK09518 bifunctional cytidyla 99.0 1.3E-09 2.8E-14 106.7 7.2 57 98-154 276-335 (712)
83 cd01876 YihA_EngB The YihA (En 98.9 2E-09 4.3E-14 85.2 6.3 56 100-155 2-58 (170)
84 cd01881 Obg_like The Obg-like 98.9 1.1E-09 2.3E-14 88.0 4.7 52 102-154 1-56 (176)
85 cd01899 Ygr210 Ygr210 subfamil 98.9 1.8E-09 3.8E-14 95.8 6.0 55 100-155 1-82 (318)
86 COG0012 Predicted GTPase, prob 98.9 2.8E-09 6E-14 94.6 5.9 58 97-155 2-80 (372)
87 cd01851 GBP Guanylate-binding 98.9 9E-09 1.9E-13 87.1 8.1 63 97-159 7-77 (224)
88 cd04171 SelB SelB subfamily. 98.9 5.7E-09 1.2E-13 82.7 6.4 55 99-153 2-62 (164)
89 TIGR00231 small_GTP small GTP- 98.8 8.4E-09 1.8E-13 80.2 7.2 55 98-153 2-61 (161)
90 COG3596 Predicted GTPase [Gene 98.8 4E-09 8.6E-14 89.9 5.4 63 96-159 38-104 (296)
91 KOG1491 Predicted GTP-binding 98.8 6.5E-09 1.4E-13 90.8 6.0 60 95-155 18-97 (391)
92 COG1159 Era GTPase [General fu 98.8 1.9E-08 4.1E-13 86.8 8.3 90 1-90 86-180 (298)
93 PF10662 PduV-EutP: Ethanolami 98.8 3.6E-08 7.7E-13 77.1 8.9 77 1-78 64-142 (143)
94 TIGR00092 GTP-binding protein 98.7 1.8E-08 3.9E-13 90.5 6.5 58 98-155 3-80 (368)
95 cd04104 p47_IIGP_like p47 (47- 98.7 2.9E-08 6.3E-13 82.2 7.4 61 97-157 1-67 (197)
96 PRK15467 ethanolamine utilizat 98.7 9.2E-08 2E-12 76.4 9.7 82 1-83 65-148 (158)
97 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 2.3E-08 5E-13 79.6 6.2 54 99-153 2-61 (168)
98 cd01861 Rab6 Rab6 subfamily. 98.7 2.9E-08 6.2E-13 78.6 6.7 53 99-152 2-59 (161)
99 cd01863 Rab18 Rab18 subfamily. 98.7 5.3E-08 1.2E-12 77.2 7.6 56 98-153 1-60 (161)
100 cd00154 Rab Rab family. Rab G 98.7 3.5E-08 7.6E-13 77.1 6.4 56 98-153 1-60 (159)
101 cd01860 Rab5_related Rab5-rela 98.7 6.3E-08 1.4E-12 76.8 7.8 55 98-152 2-60 (163)
102 TIGR00436 era GTP-binding prot 98.7 1.1E-07 2.4E-12 82.6 9.8 84 1-85 80-167 (270)
103 cd04166 CysN_ATPS CysN_ATPS su 98.7 1.5E-08 3.2E-13 84.6 4.0 55 99-153 1-88 (208)
104 KOG0410 Predicted GTP binding 98.7 1.6E-07 3.4E-12 81.8 10.3 68 97-165 178-249 (410)
105 PLN03118 Rab family protein; P 98.7 6.9E-08 1.5E-12 80.6 7.7 59 96-154 13-74 (211)
106 TIGR02528 EutP ethanolamine ut 98.7 1.6E-07 3.5E-12 73.0 9.1 76 1-77 63-140 (142)
107 cd01866 Rab2 Rab2 subfamily. 98.7 9.3E-08 2E-12 76.7 7.9 56 97-152 4-63 (168)
108 cd01894 EngA1 EngA1 subfamily. 98.7 1.8E-07 3.9E-12 73.3 9.4 76 1-79 77-155 (157)
109 PF00009 GTP_EFTU: Elongation 98.7 7.3E-08 1.6E-12 79.0 7.4 82 1-82 94-187 (188)
110 cd01889 SelB_euk SelB subfamil 98.6 3.1E-08 6.8E-13 81.4 4.9 56 98-153 1-79 (192)
111 cd04154 Arl2 Arl2 subfamily. 98.6 7.8E-08 1.7E-12 77.5 7.0 56 96-153 13-69 (173)
112 cd01895 EngA2 EngA2 subfamily. 98.6 2.7E-07 5.9E-12 73.3 9.8 79 1-79 85-172 (174)
113 cd01868 Rab11_like Rab11-like. 98.6 1.3E-07 2.8E-12 75.3 7.7 55 98-153 4-63 (165)
114 TIGR00437 feoB ferrous iron tr 98.6 9.3E-08 2E-12 91.6 7.8 51 104-155 1-54 (591)
115 PF05049 IIGP: Interferon-indu 98.6 1.2E-07 2.6E-12 85.3 7.9 61 97-158 35-102 (376)
116 cd00880 Era_like Era (E. coli 98.6 7E-08 1.5E-12 75.0 5.6 56 102-157 1-60 (163)
117 cd04119 RJL RJL (RabJ-Like) su 98.6 1.5E-07 3.2E-12 74.7 7.6 55 98-153 1-60 (168)
118 cd04171 SelB SelB subfamily. 98.6 1.8E-07 4E-12 73.9 8.0 79 1-79 75-163 (164)
119 cd01850 CDC_Septin CDC/Septin. 98.6 1.3E-07 2.8E-12 82.4 7.4 59 97-155 4-76 (276)
120 cd04163 Era Era subfamily. Er 98.6 3.1E-07 6.8E-12 72.2 9.0 79 1-79 83-166 (168)
121 cd04155 Arl3 Arl3 subfamily. 98.6 1.3E-07 2.8E-12 75.9 6.9 57 96-153 13-69 (173)
122 cd04156 ARLTS1 ARLTS1 subfamil 98.6 9.7E-08 2.1E-12 75.6 6.0 53 99-153 1-55 (160)
123 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.6E-07 5.6E-12 78.2 8.7 80 1-80 110-221 (224)
124 smart00175 RAB Rab subfamily o 98.6 2E-07 4.3E-12 73.8 7.4 54 98-152 1-59 (164)
125 cd01867 Rab8_Rab10_Rab13_like 98.6 2.2E-07 4.7E-12 74.4 7.7 57 97-153 3-63 (167)
126 cd04113 Rab4 Rab4 subfamily. 98.6 2E-07 4.4E-12 73.9 7.3 56 98-153 1-60 (161)
127 smart00178 SAR Sar1p-like memb 98.6 1.8E-07 3.9E-12 76.5 6.9 57 96-154 16-73 (184)
128 cd00881 GTP_translation_factor 98.6 8.5E-08 1.8E-12 77.7 4.9 56 99-154 1-74 (189)
129 cd01898 Obg Obg subfamily. Th 98.6 1.9E-07 4.1E-12 74.5 6.8 79 1-79 79-168 (170)
130 cd04145 M_R_Ras_like M-Ras/R-R 98.6 2.9E-07 6.3E-12 73.0 7.8 55 97-153 2-61 (164)
131 cd00878 Arf_Arl Arf (ADP-ribos 98.5 1.5E-07 3.2E-12 74.4 6.1 54 99-154 1-55 (158)
132 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.5 1.9E-07 4.1E-12 75.5 6.8 55 97-153 15-70 (174)
133 TIGR02836 spore_IV_A stage IV 98.5 1.3E-07 2.8E-12 85.5 6.3 60 96-155 16-104 (492)
134 PRK00089 era GTPase Era; Revie 98.5 5.5E-07 1.2E-11 79.0 10.2 83 1-83 85-172 (292)
135 PRK12317 elongation factor 1-a 98.5 1.1E-07 2.5E-12 87.8 6.0 58 96-153 5-95 (425)
136 PRK15467 ethanolamine utilizat 98.5 9.2E-08 2E-12 76.4 4.6 48 99-155 3-50 (158)
137 cd04157 Arl6 Arl6 subfamily. 98.5 1.7E-07 3.7E-12 74.1 5.9 55 99-154 1-57 (162)
138 cd04118 Rab24 Rab24 subfamily. 98.5 2.8E-07 6.2E-12 75.5 7.3 56 98-153 1-61 (193)
139 cd01865 Rab3 Rab3 subfamily. 98.5 3.6E-07 7.8E-12 73.0 7.7 55 98-153 2-61 (165)
140 cd04138 H_N_K_Ras_like H-Ras/N 98.5 3.5E-07 7.6E-12 72.1 7.6 54 98-153 2-60 (162)
141 cd04160 Arfrp1 Arfrp1 subfamil 98.5 1.3E-07 2.9E-12 75.3 5.2 56 99-154 1-62 (167)
142 cd01864 Rab19 Rab19 subfamily. 98.5 3.6E-07 7.8E-12 72.8 7.7 56 97-152 3-62 (165)
143 KOG1486 GTP-binding protein DR 98.5 1.6E-07 3.4E-12 79.2 5.7 60 95-155 60-122 (364)
144 cd01862 Rab7 Rab7 subfamily. 98.5 4E-07 8.7E-12 72.7 7.5 56 98-153 1-60 (172)
145 cd04164 trmE TrmE (MnmE, ThdF, 98.5 3.5E-07 7.5E-12 71.6 7.1 75 1-80 81-155 (157)
146 cd01888 eIF2_gamma eIF2-gamma 98.5 8.6E-07 1.9E-11 73.7 9.6 81 1-81 107-198 (203)
147 PRK12296 obgE GTPase CgtA; Rev 98.5 5.8E-07 1.3E-11 84.0 9.3 83 1-83 237-341 (500)
148 cd00879 Sar1 Sar1 subfamily. 98.5 3.5E-07 7.6E-12 74.7 7.0 56 96-153 18-74 (190)
149 cd04149 Arf6 Arf6 subfamily. 98.5 3.5E-07 7.6E-12 73.6 6.9 56 96-153 8-64 (168)
150 smart00173 RAS Ras subfamily o 98.5 3.9E-07 8.6E-12 72.3 7.1 54 99-154 2-60 (164)
151 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 3.5E-07 7.7E-12 72.9 6.8 55 98-153 3-62 (166)
152 cd01886 EF-G Elongation factor 98.5 3E-07 6.6E-12 79.9 6.8 56 99-154 1-76 (270)
153 cd04142 RRP22 RRP22 subfamily. 98.5 3.9E-07 8.4E-12 75.6 6.9 56 98-154 1-61 (198)
154 TIGR02729 Obg_CgtA Obg family 98.5 4.5E-07 9.7E-12 81.0 7.7 80 1-80 236-327 (329)
155 cd01891 TypA_BipA TypA (tyrosi 98.5 2.5E-07 5.4E-12 76.2 5.6 56 99-154 4-77 (194)
156 TIGR02528 EutP ethanolamine ut 98.5 2.1E-07 4.5E-12 72.4 4.9 44 99-152 2-45 (142)
157 cd04177 RSR1 RSR1 subgroup. R 98.5 4.7E-07 1E-11 72.5 7.1 55 98-154 2-61 (168)
158 cd01890 LepA LepA subfamily. 98.5 1.6E-07 3.5E-12 75.7 4.4 56 99-154 2-79 (179)
159 cd01893 Miro1 Miro1 subfamily. 98.5 2.8E-07 6.1E-12 73.7 5.7 54 98-153 1-58 (166)
160 cd00157 Rho Rho (Ras homology) 98.5 5.8E-07 1.3E-11 71.7 7.5 56 98-154 1-60 (171)
161 cd01879 FeoB Ferrous iron tran 98.5 5.4E-07 1.2E-11 70.8 7.2 78 1-80 75-155 (158)
162 PRK15494 era GTPase Era; Provi 98.5 7.3E-07 1.6E-11 80.0 8.8 87 1-88 132-222 (339)
163 cd04137 RheB Rheb (Ras Homolog 98.5 3.1E-07 6.8E-12 74.3 5.9 55 98-154 2-61 (180)
164 cd04106 Rab23_lke Rab23-like s 98.5 4.9E-07 1.1E-11 71.6 6.9 54 98-152 1-61 (162)
165 CHL00071 tufA elongation facto 98.5 3.5E-07 7.6E-12 84.1 6.8 58 95-152 10-85 (409)
166 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.5 5.6E-07 1.2E-11 73.4 7.4 57 97-153 3-63 (183)
167 cd04112 Rab26 Rab26 subfamily. 98.4 5.5E-07 1.2E-11 73.9 7.2 55 98-152 1-60 (191)
168 cd04140 ARHI_like ARHI subfami 98.4 7.1E-07 1.5E-11 71.3 7.5 55 98-154 2-61 (165)
169 cd04136 Rap_like Rap-like subf 98.4 6.7E-07 1.5E-11 70.8 7.3 55 98-154 2-61 (163)
170 cd01897 NOG NOG1 is a nucleola 98.4 1.3E-06 2.7E-11 69.7 8.9 79 1-79 80-165 (168)
171 cd04125 RabA_like RabA-like su 98.4 6.7E-07 1.5E-11 73.1 7.4 56 98-153 1-60 (188)
172 COG0486 ThdF Predicted GTPase 98.4 5.9E-07 1.3E-11 81.9 7.7 80 1-83 297-377 (454)
173 cd04151 Arl1 Arl1 subfamily. 98.4 4.6E-07 1E-11 71.8 6.2 53 99-153 1-54 (158)
174 cd00881 GTP_translation_factor 98.4 1.1E-06 2.3E-11 71.2 8.4 80 1-80 86-185 (189)
175 cd01884 EF_Tu EF-Tu subfamily. 98.4 4.5E-07 9.7E-12 75.1 6.2 57 97-153 2-76 (195)
176 cd04175 Rap1 Rap1 subgroup. T 98.4 4.4E-07 9.6E-12 72.2 6.0 55 98-154 2-61 (164)
177 KOG2486 Predicted GTPase [Gene 98.4 3.7E-07 8.1E-12 78.0 5.7 60 95-154 134-195 (320)
178 TIGR03156 GTP_HflX GTP-binding 98.4 7.6E-07 1.7E-11 80.2 8.1 75 1-79 269-349 (351)
179 cd04139 RalA_RalB RalA/RalB su 98.4 4.3E-07 9.2E-12 71.8 5.7 55 98-154 1-60 (164)
180 cd04116 Rab9 Rab9 subfamily. 98.4 9.4E-07 2E-11 70.7 7.7 57 96-153 4-65 (170)
181 cd00876 Ras Ras family. The R 98.4 4.1E-07 8.9E-12 71.5 5.4 54 99-154 1-59 (160)
182 cd04122 Rab14 Rab14 subfamily. 98.4 1.1E-06 2.3E-11 70.2 7.8 54 98-153 3-62 (166)
183 cd04159 Arl10_like Arl10-like 98.4 7.9E-07 1.7E-11 69.4 6.7 53 100-153 2-55 (159)
184 cd01889 SelB_euk SelB subfamil 98.4 1.8E-06 4E-11 70.9 9.1 80 1-80 92-184 (192)
185 cd01890 LepA LepA subfamily. 98.4 1.7E-06 3.6E-11 69.8 8.8 79 1-79 91-174 (179)
186 cd04123 Rab21 Rab21 subfamily. 98.4 7.6E-07 1.6E-11 70.1 6.5 55 98-153 1-60 (162)
187 TIGR00487 IF-2 translation ini 98.4 6.8E-07 1.5E-11 85.5 7.4 60 94-154 84-147 (587)
188 COG2262 HflX GTPases [General 98.4 1.1E-06 2.5E-11 78.9 8.3 95 1-109 272-372 (411)
189 cd04124 RabL2 RabL2 subfamily. 98.4 1E-06 2.2E-11 70.1 7.2 56 98-153 1-60 (161)
190 PRK12299 obgE GTPase CgtA; Rev 98.4 1.3E-06 2.9E-11 78.1 8.6 83 1-83 237-329 (335)
191 cd01878 HflX HflX subfamily. 98.4 1.7E-06 3.7E-11 71.6 8.7 76 1-79 121-202 (204)
192 cd04115 Rab33B_Rab33A Rab33B/R 98.4 1.2E-06 2.7E-11 70.2 7.7 56 97-153 2-62 (170)
193 COG4917 EutP Ethanolamine util 98.4 2E-06 4.2E-11 65.1 7.9 79 1-80 65-144 (148)
194 cd04161 Arl2l1_Arl13_like Arl2 98.4 7.7E-07 1.7E-11 71.5 6.3 53 99-153 1-54 (167)
195 cd04135 Tc10 TC10 subfamily. 98.4 1.2E-06 2.6E-11 70.3 7.4 55 98-154 1-60 (174)
196 cd04110 Rab35 Rab35 subfamily. 98.4 1.3E-06 2.7E-11 72.4 7.7 57 97-153 6-66 (199)
197 cd04168 TetM_like Tet(M)-like 98.4 1.1E-06 2.4E-11 74.9 7.5 56 99-154 1-76 (237)
198 PF02421 FeoB_N: Ferrous iron 98.4 7.1E-08 1.5E-12 76.8 0.0 72 1-77 79-156 (156)
199 PRK09866 hypothetical protein; 98.4 2E-06 4.3E-11 81.7 9.7 79 1-79 259-350 (741)
200 cd04176 Rap2 Rap2 subgroup. T 98.4 1.4E-06 3.1E-11 69.1 7.5 54 98-153 2-60 (163)
201 PF00735 Septin: Septin; Inte 98.4 7.1E-07 1.5E-11 78.0 6.1 59 97-155 4-76 (281)
202 cd04144 Ras2 Ras2 subfamily. 98.3 1.2E-06 2.5E-11 71.9 6.5 53 99-153 1-58 (190)
203 PRK12735 elongation factor Tu; 98.3 1.3E-06 2.8E-11 80.0 7.4 59 95-153 10-86 (396)
204 PTZ00133 ADP-ribosylation fact 98.3 1.4E-06 3.1E-11 71.1 6.9 55 97-153 17-72 (182)
205 cd00877 Ran Ran (Ras-related n 98.3 1.8E-06 4E-11 69.2 7.4 57 98-154 1-61 (166)
206 PRK05306 infB translation init 98.3 3.2E-06 6.9E-11 83.1 10.3 60 94-154 287-349 (787)
207 cd00880 Era_like Era (E. coli 98.3 2.9E-06 6.2E-11 65.8 8.0 79 1-79 76-161 (163)
208 PLN03110 Rab GTPase; Provision 98.3 2.1E-06 4.5E-11 72.1 7.7 57 97-153 12-72 (216)
209 cd04124 RabL2 RabL2 subfamily. 98.3 3.4E-06 7.3E-11 67.1 8.5 79 1-80 73-156 (161)
210 cd04158 ARD1 ARD1 subfamily. 98.3 1.7E-06 3.8E-11 69.4 6.8 52 99-154 1-55 (169)
211 cd04101 RabL4 RabL4 (Rab-like4 98.3 2.2E-06 4.8E-11 68.0 7.3 55 98-152 1-62 (164)
212 TIGR00484 EF-G translation elo 98.3 2.4E-06 5.1E-11 83.6 8.9 57 98-154 11-87 (689)
213 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 2.2E-06 4.7E-11 70.9 7.5 55 98-153 1-61 (201)
214 KOG1547 Septin CDC10 and relat 98.3 1.3E-06 2.7E-11 73.4 5.8 59 97-155 46-117 (336)
215 cd04150 Arf1_5_like Arf1-Arf5- 98.3 1.8E-06 3.9E-11 68.7 6.6 54 98-153 1-55 (159)
216 PRK12298 obgE GTPase CgtA; Rev 98.3 2.1E-06 4.5E-11 78.4 7.8 83 1-84 238-335 (390)
217 TIGR03598 GTPase_YsxC ribosome 98.3 2.4E-06 5.2E-11 69.4 7.3 70 1-70 101-178 (179)
218 cd04170 EF-G_bact Elongation f 98.3 1.1E-06 2.4E-11 76.2 5.6 22 99-120 1-22 (268)
219 cd04127 Rab27A Rab27a subfamil 98.3 2.6E-06 5.6E-11 68.8 7.3 25 97-121 4-28 (180)
220 cd04132 Rho4_like Rho4-like su 98.3 2.4E-06 5.1E-11 69.6 7.0 55 98-153 1-60 (187)
221 smart00177 ARF ARF-like small 98.3 2.8E-06 6E-11 68.8 7.3 56 97-154 13-69 (175)
222 PTZ00369 Ras-like protein; Pro 98.3 3E-06 6.5E-11 69.4 7.6 57 97-154 5-65 (189)
223 PRK05291 trmE tRNA modificatio 98.3 2.2E-06 4.7E-11 79.8 7.5 75 1-81 295-369 (449)
224 cd04114 Rab30 Rab30 subfamily. 98.3 3.5E-06 7.6E-11 67.2 7.7 56 97-153 7-67 (169)
225 cd04117 Rab15 Rab15 subfamily. 98.3 3.2E-06 6.9E-11 67.3 7.4 55 98-153 1-60 (161)
226 PRK00454 engB GTP-binding prot 98.3 6.5E-06 1.4E-10 67.4 9.3 81 2-82 108-194 (196)
227 cd04109 Rab28 Rab28 subfamily. 98.3 2.5E-06 5.4E-11 71.5 6.9 54 98-152 1-60 (215)
228 PF08477 Miro: Miro-like prote 98.3 3.4E-06 7.4E-11 63.4 7.0 56 99-154 1-62 (119)
229 smart00174 RHO Rho (Ras homolo 98.3 2.6E-06 5.7E-11 68.3 6.7 54 100-154 1-58 (174)
230 cd01881 Obg_like The Obg-like 98.2 1.9E-06 4.1E-11 69.0 5.7 78 1-78 75-173 (176)
231 cd04148 RGK RGK subfamily. Th 98.2 3.3E-06 7.1E-11 71.2 7.3 56 98-153 1-61 (221)
232 PLN03127 Elongation factor Tu; 98.2 2.5E-06 5.4E-11 79.2 7.1 59 95-153 59-135 (447)
233 PLN03108 Rab family protein; P 98.2 4.2E-06 9E-11 69.9 7.8 57 97-153 6-66 (210)
234 PTZ00327 eukaryotic translatio 98.2 5.3E-06 1.2E-10 77.2 9.2 82 1-82 141-233 (460)
235 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 4.2E-06 9.1E-11 67.5 7.5 54 99-153 2-60 (170)
236 cd04146 RERG_RasL11_like RERG/ 98.2 2.4E-06 5.2E-11 68.1 5.9 54 99-154 1-59 (165)
237 PRK00007 elongation factor G; 98.2 3E-06 6.5E-11 83.0 7.7 57 98-154 11-87 (693)
238 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.2 4.9E-06 1.1E-10 67.2 7.7 56 97-154 2-62 (172)
239 cd04111 Rab39 Rab39 subfamily. 98.2 4.3E-06 9.2E-11 70.0 7.5 55 98-153 3-63 (211)
240 COG0218 Predicted GTPase [Gene 98.2 8.7E-06 1.9E-10 66.8 8.9 80 2-81 108-196 (200)
241 PLN00223 ADP-ribosylation fact 98.2 4.1E-06 8.9E-11 68.3 7.1 54 97-152 17-71 (181)
242 TIGR00475 selB selenocysteine- 98.2 2.4E-06 5.3E-11 81.8 6.5 54 99-152 2-60 (581)
243 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 8.7E-06 1.9E-10 64.6 8.6 81 1-81 74-165 (168)
244 PLN03071 GTP-binding nuclear p 98.2 6.1E-06 1.3E-10 69.4 8.0 59 96-154 12-74 (219)
245 TIGR00491 aIF-2 translation in 98.2 2.6E-06 5.5E-11 81.6 6.2 36 97-134 4-40 (590)
246 PRK00049 elongation factor Tu; 98.2 2.7E-06 5.9E-11 77.9 6.2 59 95-153 10-86 (396)
247 cd01870 RhoA_like RhoA-like su 98.2 6E-06 1.3E-10 66.2 7.4 54 99-153 3-60 (175)
248 cd04126 Rab20 Rab20 subfamily. 98.2 4E-06 8.7E-11 70.7 6.6 55 98-154 1-56 (220)
249 cd04169 RF3 RF3 subfamily. Pe 98.2 6.7E-06 1.5E-10 71.4 8.0 21 99-119 4-24 (267)
250 CHL00189 infB translation init 98.2 2.6E-06 5.7E-11 83.1 6.0 59 94-153 241-306 (742)
251 PRK12297 obgE GTPase CgtA; Rev 98.2 5.6E-06 1.2E-10 76.2 7.6 80 1-83 237-328 (424)
252 cd04156 ARLTS1 ARLTS1 subfamil 98.2 3.4E-06 7.5E-11 66.6 5.4 78 1-78 68-158 (160)
253 cd04154 Arl2 Arl2 subfamily. 98.2 3.8E-06 8.2E-11 67.6 5.6 77 1-77 82-170 (173)
254 PRK13768 GTPase; Provisional 98.1 5.1E-06 1.1E-10 71.6 6.5 82 1-82 129-247 (253)
255 PRK12739 elongation factor G; 98.1 3.9E-06 8.4E-11 82.1 6.5 58 97-154 8-85 (691)
256 cd04147 Ras_dva Ras-dva subfam 98.1 5.4E-06 1.2E-10 68.5 6.5 54 99-154 1-59 (198)
257 PRK05506 bifunctional sulfate 98.1 2E-06 4.2E-11 83.4 4.3 27 96-122 23-49 (632)
258 TIGR00475 selB selenocysteine- 98.1 1.2E-05 2.7E-10 77.1 9.6 84 1-84 74-168 (581)
259 TIGR00485 EF-Tu translation el 98.1 5.2E-06 1.1E-10 76.0 6.7 58 96-153 11-86 (394)
260 cd01876 YihA_EngB The YihA (En 98.1 1.6E-05 3.6E-10 62.5 8.8 79 2-80 83-169 (170)
261 COG1100 GTPase SAR1 and relate 98.1 7.1E-06 1.5E-10 68.4 6.9 57 98-154 6-66 (219)
262 PRK12736 elongation factor Tu; 98.1 4.8E-06 1E-10 76.3 6.3 58 95-152 10-85 (394)
263 cd01862 Rab7 Rab7 subfamily. 98.1 1.1E-05 2.4E-10 64.3 7.7 81 1-81 73-166 (172)
264 cd04151 Arl1 Arl1 subfamily. 98.1 5.5E-06 1.2E-10 65.5 5.7 77 1-77 67-155 (158)
265 cd04105 SR_beta Signal recogni 98.1 7.7E-06 1.7E-10 68.0 6.8 54 99-154 2-60 (203)
266 cd00877 Ran Ran (Ras-related n 98.1 1E-05 2.3E-10 64.8 7.3 79 1-79 73-156 (166)
267 PRK10512 selenocysteinyl-tRNA- 98.1 1.4E-05 3.1E-10 77.0 9.3 83 1-83 75-167 (614)
268 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 9.5E-06 2.1E-10 66.1 7.1 81 1-81 76-169 (183)
269 cd04160 Arfrp1 Arfrp1 subfamil 98.1 5.6E-06 1.2E-10 65.8 5.5 77 1-77 74-164 (167)
270 PF10662 PduV-EutP: Ethanolami 98.1 4.7E-06 1E-10 65.2 4.9 46 99-154 3-48 (143)
271 PRK04004 translation initiatio 98.1 7.8E-06 1.7E-10 78.4 7.2 27 95-121 4-30 (586)
272 cd04134 Rho3 Rho3 subfamily. 98.1 1.2E-05 2.7E-10 65.8 7.5 54 99-153 2-59 (189)
273 KOG1249 Predicted GTPases [Gen 98.1 4.3E-06 9.3E-11 77.2 5.1 121 3-136 113-263 (572)
274 cd04157 Arl6 Arl6 subfamily. 98.1 8.1E-06 1.7E-10 64.4 6.0 77 1-77 69-159 (162)
275 PLN03126 Elongation factor Tu; 98.1 9.6E-06 2.1E-10 75.9 7.4 59 95-153 79-155 (478)
276 PRK04000 translation initiatio 98.1 1.8E-05 3.9E-10 72.9 9.0 81 1-81 109-200 (411)
277 PRK04213 GTP-binding protein; 98.1 2.1E-05 4.6E-10 64.8 8.7 80 1-81 91-191 (201)
278 smart00175 RAB Rab subfamily o 98.1 1.6E-05 3.4E-10 62.8 7.5 80 1-80 73-160 (164)
279 PRK10512 selenocysteinyl-tRNA- 98.1 8.7E-06 1.9E-10 78.5 7.1 54 99-152 2-61 (614)
280 cd04112 Rab26 Rab26 subfamily. 98.1 1.5E-05 3.3E-10 65.3 7.4 83 1-83 74-164 (191)
281 cd00882 Ras_like_GTPase Ras-li 98.1 5.2E-06 1.1E-10 63.4 4.4 52 102-154 1-57 (157)
282 cd04130 Wrch_1 Wrch-1 subfamil 98.0 1.6E-05 3.4E-10 64.0 7.3 54 98-153 1-59 (173)
283 TIGR03680 eif2g_arch translati 98.0 1.9E-05 4.2E-10 72.6 8.8 82 1-82 104-196 (406)
284 cd01892 Miro2 Miro2 subfamily. 98.0 2E-05 4.3E-10 63.3 7.9 58 96-154 3-66 (169)
285 cd01874 Cdc42 Cdc42 subfamily. 98.0 2E-05 4.3E-10 63.8 7.7 55 98-154 2-61 (175)
286 cd04119 RJL RJL (RabJ-Like) su 98.0 1.7E-05 3.8E-10 62.7 7.1 78 1-78 73-163 (168)
287 PRK11058 GTPase HflX; Provisio 98.0 2.2E-05 4.7E-10 72.6 8.6 78 1-81 277-361 (426)
288 cd01884 EF_Tu EF-Tu subfamily. 98.0 3.8E-05 8.2E-10 63.6 9.3 70 1-70 89-171 (195)
289 cd04149 Arf6 Arf6 subfamily. 98.0 1E-05 2.2E-10 65.1 5.7 77 1-77 77-165 (168)
290 cd01891 TypA_BipA TypA (tyrosi 98.0 2.3E-05 4.9E-10 64.5 7.9 73 1-73 89-173 (194)
291 cd01882 BMS1 Bms1. Bms1 is an 98.0 1.4E-05 3.1E-10 67.5 6.6 58 94-153 36-94 (225)
292 KOG2655 Septin family protein 98.0 8.9E-06 1.9E-10 72.6 5.5 59 97-155 21-92 (366)
293 cd04158 ARD1 ARD1 subfamily. 98.0 1.5E-05 3.2E-10 64.0 6.4 79 1-79 67-158 (169)
294 cd04150 Arf1_5_like Arf1-Arf5- 98.0 1.3E-05 2.8E-10 63.8 5.9 77 1-77 68-156 (159)
295 cd04162 Arl9_Arfrp2_like Arl9/ 98.0 1.7E-05 3.6E-10 63.5 6.4 53 100-154 2-56 (164)
296 cd01892 Miro2 Miro2 subfamily. 98.0 1.2E-05 2.6E-10 64.7 5.5 80 1-80 78-164 (169)
297 cd04101 RabL4 RabL4 (Rab-like4 98.0 2.6E-05 5.7E-10 61.7 7.5 79 1-79 76-161 (164)
298 cd04123 Rab21 Rab21 subfamily. 98.0 2.8E-05 6E-10 61.1 7.4 79 1-79 73-159 (162)
299 cd04139 RalA_RalB RalA/RalB su 98.0 3.1E-05 6.7E-10 61.0 7.7 79 1-79 72-159 (164)
300 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 3.6E-05 7.9E-10 63.6 8.1 81 1-81 74-167 (201)
301 cd04145 M_R_Ras_like M-Ras/R-R 98.0 3E-05 6.5E-10 61.3 7.3 78 1-78 74-160 (164)
302 cd04128 Spg1 Spg1p. Spg1p (se 98.0 3.2E-05 6.9E-10 63.1 7.6 55 98-153 1-60 (182)
303 cd00878 Arf_Arl Arf (ADP-ribos 98.0 1.9E-05 4.2E-10 62.2 6.2 78 1-78 67-156 (158)
304 cd01871 Rac1_like Rac1-like su 98.0 1.8E-05 3.9E-10 64.0 6.1 54 98-153 2-60 (174)
305 cd04118 Rab24 Rab24 subfamily. 98.0 3.4E-05 7.3E-10 63.1 7.7 81 1-81 74-165 (193)
306 PF00350 Dynamin_N: Dynamin fa 98.0 1.2E-05 2.6E-10 64.3 4.9 33 100-132 1-33 (168)
307 cd01893 Miro1 Miro1 subfamily. 98.0 2.7E-05 5.8E-10 62.2 6.9 80 1-80 71-162 (166)
308 PF00009 GTP_EFTU: Elongation 97.9 5.4E-06 1.2E-10 67.9 2.9 57 97-153 3-81 (188)
309 cd04143 Rhes_like Rhes_like su 97.9 2.5E-05 5.5E-10 67.0 7.1 53 99-153 2-59 (247)
310 cd01865 Rab3 Rab3 subfamily. 97.9 4.6E-05 9.9E-10 60.7 8.2 80 1-80 74-161 (165)
311 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 1.7E-05 3.8E-10 63.9 5.8 77 1-77 83-171 (174)
312 cd04128 Spg1 Spg1p. Spg1p (se 97.9 3.2E-05 6.9E-10 63.1 7.3 81 1-81 73-165 (182)
313 COG5019 CDC3 Septin family pro 97.9 2.1E-05 4.6E-10 69.9 6.6 60 96-155 22-95 (373)
314 smart00177 ARF ARF-like small 97.9 2.5E-05 5.5E-10 63.1 6.7 79 1-79 81-171 (175)
315 cd04159 Arl10_like Arl10-like 97.9 2.1E-05 4.5E-10 61.3 5.9 78 1-78 68-157 (159)
316 cd04131 Rnd Rnd subfamily. Th 97.9 4E-05 8.7E-10 62.3 7.7 55 98-153 2-60 (178)
317 KOG1487 GTP-binding protein DR 97.9 1.2E-05 2.6E-10 68.3 4.7 57 98-155 60-119 (358)
318 PF00071 Ras: Ras family; Int 97.9 3.2E-05 6.9E-10 61.1 7.0 55 99-153 1-59 (162)
319 cd00157 Rho Rho (Ras homology) 97.9 1.9E-05 4.2E-10 62.8 5.7 78 1-78 72-169 (171)
320 cd04106 Rab23_lke Rab23-like s 97.9 3.5E-05 7.5E-10 60.8 7.2 78 1-78 75-159 (162)
321 PTZ00132 GTP-binding nuclear p 97.9 4.2E-05 9E-10 63.9 7.9 58 96-153 8-69 (215)
322 PTZ00099 rab6; Provisional 97.9 4.4E-05 9.5E-10 62.1 7.8 83 1-83 53-143 (176)
323 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.9 4E-05 8.7E-10 60.9 7.5 79 1-79 75-161 (166)
324 smart00178 SAR Sar1p-like memb 97.9 2.1E-05 4.5E-10 64.2 5.9 78 1-78 85-181 (184)
325 cd04127 Rab27A Rab27a subfamil 97.9 4E-05 8.6E-10 61.8 7.5 79 1-79 87-174 (180)
326 PLN00223 ADP-ribosylation fact 97.9 3.1E-05 6.8E-10 63.1 6.8 79 1-79 85-175 (181)
327 cd04121 Rab40 Rab40 subfamily. 97.9 4.7E-05 1E-09 62.7 7.8 57 96-153 5-66 (189)
328 cd04109 Rab28 Rab28 subfamily. 97.9 4.1E-05 8.9E-10 64.1 7.5 81 1-81 74-165 (215)
329 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 4.5E-05 9.7E-10 61.4 7.4 83 1-83 73-166 (170)
330 cd04132 Rho4_like Rho4-like su 97.9 5.5E-05 1.2E-09 61.5 8.1 81 1-81 73-166 (187)
331 TIGR00483 EF-1_alpha translati 97.9 2.3E-05 5.1E-10 72.4 6.5 58 95-152 5-95 (426)
332 cd04110 Rab35 Rab35 subfamily. 97.9 4.2E-05 9.1E-10 63.2 7.4 81 1-81 79-166 (199)
333 cd01867 Rab8_Rab10_Rab13_like 97.9 5.4E-05 1.2E-09 60.4 7.6 77 1-79 76-162 (167)
334 cd04138 H_N_K_Ras_like H-Ras/N 97.9 5.1E-05 1.1E-09 59.5 7.3 78 1-78 73-158 (162)
335 smart00173 RAS Ras subfamily o 97.9 6.2E-05 1.4E-09 59.5 7.8 79 1-79 72-159 (164)
336 cd04142 RRP22 RRP22 subfamily. 97.9 5.9E-05 1.3E-09 62.5 7.8 78 1-78 81-170 (198)
337 cd01868 Rab11_like Rab11-like. 97.9 5.4E-05 1.2E-09 60.1 7.4 78 1-78 76-161 (165)
338 cd04120 Rab12 Rab12 subfamily. 97.9 5.4E-05 1.2E-09 63.0 7.4 54 99-153 2-60 (202)
339 cd01866 Rab2 Rab2 subfamily. 97.9 9.8E-05 2.1E-09 59.0 8.8 77 1-79 77-163 (168)
340 cd04167 Snu114p Snu114p subfam 97.9 1.4E-05 3.1E-10 66.8 4.0 23 99-121 2-24 (213)
341 cd04144 Ras2 Ras2 subfamily. 97.8 7.4E-05 1.6E-09 61.2 8.0 80 1-80 71-161 (190)
342 cd04147 Ras_dva Ras-dva subfam 97.8 5.8E-05 1.3E-09 62.3 7.4 80 1-80 71-161 (198)
343 PRK05124 cysN sulfate adenylyl 97.8 2.7E-05 5.8E-10 73.0 6.0 25 96-120 26-50 (474)
344 smart00176 RAN Ran (Ras-relate 97.8 5E-05 1.1E-09 63.1 7.0 79 1-79 68-151 (200)
345 cd04136 Rap_like Rap-like subf 97.8 6.5E-05 1.4E-09 59.3 7.4 78 1-78 73-159 (163)
346 PRK09866 hypothetical protein; 97.8 6.7E-05 1.5E-09 71.6 8.6 57 97-154 69-129 (741)
347 cd04121 Rab40 Rab40 subfamily. 97.8 6.6E-05 1.4E-09 61.8 7.6 76 1-79 79-164 (189)
348 cd00154 Rab Rab family. Rab G 97.8 5.1E-05 1.1E-09 58.9 6.6 77 1-77 73-157 (159)
349 smart00053 DYNc Dynamin, GTPas 97.8 0.00016 3.4E-09 61.8 10.0 25 97-121 26-50 (240)
350 PTZ00133 ADP-ribosylation fact 97.8 5.6E-05 1.2E-09 61.6 6.9 79 1-79 85-175 (182)
351 COG0536 Obg Predicted GTPase [ 97.8 3.9E-05 8.5E-10 67.6 6.2 83 2-85 239-336 (369)
352 cd01885 EF2 EF2 (for archaea a 97.8 3.7E-05 7.9E-10 65.0 5.9 23 99-121 2-24 (222)
353 cd04126 Rab20 Rab20 subfamily. 97.8 6.8E-05 1.5E-09 63.2 7.6 80 1-80 68-188 (220)
354 cd00879 Sar1 Sar1 subfamily. 97.8 3.9E-05 8.4E-10 62.5 5.9 79 1-79 87-188 (190)
355 TIGR00231 small_GTP small GTP- 97.8 3.2E-05 6.8E-10 59.8 5.1 77 2-78 82-160 (161)
356 cd04166 CysN_ATPS CysN_ATPS su 97.8 6.2E-05 1.3E-09 62.8 7.1 72 1-72 101-184 (208)
357 cd04122 Rab14 Rab14 subfamily. 97.8 8.5E-05 1.8E-09 59.1 7.5 75 1-77 75-159 (166)
358 cd04102 RabL3 RabL3 (Rab-like3 97.8 7.2E-05 1.6E-09 62.3 7.3 57 98-154 1-66 (202)
359 cd01861 Rab6 Rab6 subfamily. 97.8 6.2E-05 1.3E-09 59.3 6.6 79 1-79 73-159 (161)
360 cd04148 RGK RGK subfamily. Th 97.8 7.5E-05 1.6E-09 62.9 7.4 81 1-81 73-162 (221)
361 cd01864 Rab19 Rab19 subfamily. 97.8 8E-05 1.7E-09 59.2 7.2 78 1-78 76-162 (165)
362 KOG1489 Predicted GTP-binding 97.8 8.9E-05 1.9E-09 64.8 7.7 76 1-79 275-364 (366)
363 cd01883 EF1_alpha Eukaryotic e 97.8 3.3E-05 7.2E-10 64.9 5.0 55 99-153 1-88 (219)
364 cd04129 Rho2 Rho2 subfamily. 97.8 8.7E-05 1.9E-09 60.6 7.4 56 98-154 2-61 (187)
365 PTZ00369 Ras-like protein; Pro 97.8 9.2E-05 2E-09 60.5 7.5 79 1-79 77-164 (189)
366 PRK09554 feoB ferrous iron tra 97.8 6.7E-05 1.5E-09 74.1 7.8 79 1-81 86-167 (772)
367 cd04140 ARHI_like ARHI subfami 97.8 8.1E-05 1.7E-09 59.3 7.0 80 1-80 73-163 (165)
368 PRK05433 GTP-binding protein L 97.8 0.00011 2.3E-09 70.9 8.9 83 1-83 98-185 (600)
369 cd04175 Rap1 Rap1 subgroup. T 97.8 7.8E-05 1.7E-09 59.1 6.8 79 1-79 73-160 (164)
370 cd01883 EF1_alpha Eukaryotic e 97.8 0.0001 2.2E-09 61.9 7.8 71 1-71 101-194 (219)
371 cd04130 Wrch_1 Wrch-1 subfamil 97.8 7.2E-05 1.6E-09 60.1 6.6 77 1-77 72-169 (173)
372 TIGR01393 lepA GTP-binding pro 97.8 9.8E-05 2.1E-09 71.1 8.5 82 1-82 94-180 (595)
373 TIGR00503 prfC peptide chain r 97.8 9.2E-05 2E-09 70.2 8.2 22 97-118 11-32 (527)
374 cd01863 Rab18 Rab18 subfamily. 97.8 0.00011 2.4E-09 57.9 7.5 78 1-78 73-158 (161)
375 smart00174 RHO Rho (Ras homolo 97.8 0.0001 2.2E-09 59.0 7.3 79 1-79 70-169 (174)
376 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 9.2E-05 2E-09 62.5 7.3 55 98-153 2-60 (222)
377 cd04146 RERG_RasL11_like RERG/ 97.8 9.4E-05 2E-09 58.8 7.0 78 1-78 72-160 (165)
378 cd04113 Rab4 Rab4 subfamily. 97.7 9.8E-05 2.1E-09 58.3 6.9 77 1-77 73-157 (161)
379 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.7 0.00014 2.9E-09 59.5 7.8 55 97-152 5-63 (182)
380 PRK10218 GTP-binding protein; 97.7 0.00013 2.7E-09 70.3 8.6 57 98-154 6-80 (607)
381 cd01860 Rab5_related Rab5-rela 97.7 0.00012 2.7E-09 57.7 7.3 79 1-79 74-160 (163)
382 TIGR02034 CysN sulfate adenyly 97.7 0.0002 4.4E-09 65.8 9.7 72 1-72 104-187 (406)
383 TIGR03680 eif2g_arch translati 97.7 4.6E-05 1E-09 70.1 5.3 25 96-120 3-27 (406)
384 PLN03108 Rab family protein; P 97.7 0.00019 4E-09 59.9 8.5 81 1-81 79-168 (210)
385 cd00882 Ras_like_GTPase Ras-li 97.7 9.3E-05 2E-09 56.3 6.2 77 1-77 69-155 (157)
386 cd01875 RhoG RhoG subfamily. 97.7 0.00011 2.4E-09 60.3 6.9 56 97-153 3-62 (191)
387 cd04176 Rap2 Rap2 subgroup. T 97.7 0.00011 2.4E-09 58.1 6.8 78 1-78 73-159 (163)
388 cd01873 RhoBTB RhoBTB subfamil 97.7 0.00012 2.7E-09 60.4 7.1 78 1-78 88-192 (195)
389 PLN03071 GTP-binding nuclear p 97.7 8.9E-05 1.9E-09 62.4 6.4 77 1-78 86-168 (219)
390 cd04120 Rab12 Rab12 subfamily. 97.7 0.00014 3E-09 60.6 7.4 78 1-78 73-159 (202)
391 PRK12736 elongation factor Tu; 97.7 0.0002 4.4E-09 65.6 9.2 81 1-81 99-200 (394)
392 COG0532 InfB Translation initi 97.7 0.0002 4.3E-09 66.6 9.0 82 1-83 79-171 (509)
393 TIGR00437 feoB ferrous iron tr 97.7 7.1E-05 1.5E-09 72.0 6.4 78 1-80 73-153 (591)
394 TIGR01393 lepA GTP-binding pro 97.7 6.4E-05 1.4E-09 72.3 6.1 56 99-154 5-82 (595)
395 cd04133 Rop_like Rop subfamily 97.7 0.00013 2.8E-09 59.3 7.0 55 98-154 2-61 (176)
396 cd04114 Rab30 Rab30 subfamily. 97.7 0.00014 3E-09 57.9 7.0 79 1-79 80-166 (169)
397 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 0.00016 3.4E-09 58.3 7.3 75 1-78 74-160 (172)
398 PLN03118 Rab family protein; P 97.7 0.00014 3.1E-09 60.5 7.3 82 1-82 86-177 (211)
399 cd01888 eIF2_gamma eIF2-gamma 97.7 7.7E-05 1.7E-09 61.9 5.4 23 98-120 1-23 (203)
400 PRK12317 elongation factor 1-a 97.7 0.00021 4.5E-09 66.1 8.8 72 1-72 108-195 (425)
401 TIGR02034 CysN sulfate adenyly 97.7 4.7E-05 1E-09 70.1 4.4 55 98-152 1-90 (406)
402 TIGR00450 mnmE_trmE_thdF tRNA 97.7 0.00019 4.1E-09 66.7 8.4 73 1-79 283-357 (442)
403 cd04125 RabA_like RabA-like su 97.7 0.00021 4.5E-09 58.2 7.7 81 1-81 73-161 (188)
404 PF00025 Arf: ADP-ribosylation 97.6 6.8E-05 1.5E-09 60.8 4.7 57 95-153 12-69 (175)
405 cd01874 Cdc42 Cdc42 subfamily. 97.6 0.00017 3.7E-09 58.3 7.0 78 1-78 73-171 (175)
406 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.0002 4.4E-09 60.8 7.7 56 97-153 13-72 (232)
407 TIGR00483 EF-1_alpha translati 97.6 0.00023 5E-09 65.9 8.6 72 1-72 109-197 (426)
408 PLN00023 GTP-binding protein; 97.6 0.0002 4.2E-09 63.6 7.6 59 95-153 19-94 (334)
409 PRK05124 cysN sulfate adenylyl 97.6 0.00021 4.5E-09 67.1 8.1 74 1-74 131-217 (474)
410 cd01871 Rac1_like Rac1-like su 97.6 0.00018 4E-09 58.1 6.8 78 1-78 73-171 (174)
411 cd01870 RhoA_like RhoA-like su 97.6 0.00029 6.3E-09 56.4 7.8 79 1-79 73-172 (175)
412 cd04133 Rop_like Rop subfamily 97.6 0.00025 5.3E-09 57.7 7.4 76 1-79 73-170 (176)
413 cd04103 Centaurin_gamma Centau 97.6 0.00024 5.2E-09 56.5 7.3 55 98-154 1-59 (158)
414 PRK00741 prfC peptide chain re 97.6 0.00015 3.2E-09 68.8 6.9 21 98-118 11-31 (526)
415 cd04143 Rhes_like Rhes_like su 97.6 0.00023 5.1E-09 61.0 7.5 81 1-81 72-170 (247)
416 cd04115 Rab33B_Rab33A Rab33B/R 97.6 0.00024 5.2E-09 56.9 7.2 82 1-82 76-166 (170)
417 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.0001 2.2E-09 59.0 4.9 76 1-76 68-160 (164)
418 cd04155 Arl3 Arl3 subfamily. 97.6 0.00013 2.9E-09 58.2 5.7 77 1-77 82-170 (173)
419 TIGR00487 IF-2 translation ini 97.6 0.00025 5.5E-09 68.1 8.4 79 1-79 159-247 (587)
420 PF00025 Arf: ADP-ribosylation 97.6 8.6E-05 1.9E-09 60.2 4.5 78 1-78 82-172 (175)
421 cd04134 Rho3 Rho3 subfamily. 97.6 0.00022 4.7E-09 58.4 6.9 81 1-81 72-173 (189)
422 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00031 6.8E-09 59.7 7.8 79 1-79 85-185 (232)
423 TIGR00491 aIF-2 translation in 97.6 0.00027 5.9E-09 67.8 8.2 82 1-82 93-216 (590)
424 CHL00071 tufA elongation facto 97.6 0.00035 7.6E-09 64.4 8.7 68 1-68 99-179 (409)
425 cd04135 Tc10 TC10 subfamily. 97.6 0.00032 7E-09 56.0 7.5 78 1-78 72-170 (174)
426 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.6 0.00029 6.3E-09 57.5 7.2 78 1-78 77-176 (182)
427 cd04131 Rnd Rnd subfamily. Th 97.6 0.00034 7.5E-09 56.8 7.7 79 1-79 73-173 (178)
428 PRK13351 elongation factor G; 97.6 0.00015 3.2E-09 71.2 6.4 58 97-154 8-85 (687)
429 CHL00189 infB translation init 97.5 0.00038 8.2E-09 68.2 9.1 81 1-81 319-409 (742)
430 cd04111 Rab39 Rab39 subfamily. 97.5 0.00034 7.3E-09 58.5 7.7 81 1-81 76-165 (211)
431 cd00876 Ras Ras family. The R 97.5 0.0003 6.4E-09 55.0 7.0 78 1-78 71-157 (160)
432 TIGR00485 EF-Tu translation el 97.5 0.00075 1.6E-08 61.8 10.6 68 1-68 99-179 (394)
433 PTZ00141 elongation factor 1- 97.5 0.00018 3.8E-09 67.0 6.4 58 96-153 6-96 (446)
434 PRK05506 bifunctional sulfate 97.5 0.00038 8.2E-09 67.7 8.8 72 1-72 128-211 (632)
435 PRK05306 infB translation init 97.5 0.00033 7.2E-09 69.2 8.4 80 1-80 361-450 (787)
436 KOG1423 Ras-like GTPase ERA [C 97.5 0.00027 5.8E-09 61.6 6.7 86 1-86 156-275 (379)
437 PRK14845 translation initiatio 97.5 0.00059 1.3E-08 69.2 9.9 82 1-82 550-673 (1049)
438 PLN03110 Rab GTPase; Provision 97.5 0.00053 1.2E-08 57.4 8.3 79 1-81 85-173 (216)
439 KOG0080 GTPase Rab18, small G 97.5 0.00041 8.8E-09 54.9 6.9 58 97-154 11-72 (209)
440 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 0.00018 4E-09 61.0 5.4 56 99-154 1-60 (232)
441 PRK09435 membrane ATPase/prote 97.5 0.00047 1E-08 61.6 8.0 79 1-82 170-260 (332)
442 TIGR01394 TypA_BipA GTP-bindin 97.5 0.00024 5.2E-09 68.3 6.4 56 99-154 3-76 (594)
443 KOG1532 GTPase XAB1, interacts 97.4 0.00079 1.7E-08 58.0 8.6 52 3-54 150-208 (366)
444 COG5257 GCD11 Translation init 97.4 0.00047 1E-08 60.5 7.3 83 1-83 110-203 (415)
445 KOG0394 Ras-related GTPase [Ge 97.4 0.00019 4.2E-09 58.0 4.4 58 96-153 8-69 (210)
446 cd04117 Rab15 Rab15 subfamily. 97.4 0.00047 1E-08 54.7 6.8 78 1-78 73-158 (161)
447 PLN03127 Elongation factor Tu; 97.4 0.00085 1.8E-08 62.5 9.3 44 1-44 148-194 (447)
448 PRK12735 elongation factor Tu; 97.4 0.00074 1.6E-08 61.9 8.7 81 1-81 99-202 (396)
449 PRK00049 elongation factor Tu; 97.4 0.00074 1.6E-08 62.0 8.6 80 1-80 99-201 (396)
450 cd01875 RhoG RhoG subfamily. 97.4 0.00053 1.2E-08 56.2 7.0 79 1-79 75-174 (191)
451 COG2895 CysN GTPases - Sulfate 97.4 0.00039 8.4E-09 61.7 6.0 70 1-70 110-191 (431)
452 PTZ00416 elongation factor 2; 97.4 0.00031 6.7E-09 70.3 6.1 35 98-132 20-54 (836)
453 cd04137 RheB Rheb (Ras Homolog 97.4 0.00081 1.7E-08 54.1 7.6 82 1-82 73-163 (180)
454 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.00071 1.5E-08 57.2 7.4 67 1-67 104-181 (225)
455 PRK04004 translation initiatio 97.4 0.0013 2.8E-08 63.3 10.0 80 1-80 95-216 (586)
456 cd04116 Rab9 Rab9 subfamily. 97.3 0.0011 2.3E-08 52.8 8.0 77 1-77 78-166 (170)
457 COG0370 FeoB Fe2+ transport sy 97.3 0.00017 3.7E-09 68.9 3.7 80 1-82 82-164 (653)
458 COG3276 SelB Selenocysteine-sp 97.3 0.0013 2.7E-08 60.0 9.0 82 1-82 74-162 (447)
459 KOG1145 Mitochondrial translat 97.3 0.0012 2.5E-08 61.8 8.9 80 1-81 225-315 (683)
460 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.00043 9.3E-09 55.4 5.5 67 1-67 67-148 (167)
461 PLN00116 translation elongatio 97.3 0.00048 1E-08 69.0 6.9 25 98-122 20-44 (843)
462 PRK04000 translation initiatio 97.3 0.00033 7.1E-09 64.6 5.2 25 96-120 8-32 (411)
463 smart00176 RAN Ran (Ras-relate 97.3 0.00056 1.2E-08 56.8 6.1 51 103-153 1-55 (200)
464 KOG1249 Predicted GTPases [Gen 97.3 1.9E-05 4.1E-10 73.0 -3.0 97 97-193 309-416 (572)
465 TIGR00490 aEF-2 translation el 97.3 0.00023 5E-09 70.1 4.3 57 98-154 20-98 (720)
466 cd04103 Centaurin_gamma Centau 97.3 0.00052 1.1E-08 54.6 5.3 78 1-78 66-155 (158)
467 PRK05433 GTP-binding protein L 97.3 0.00045 9.8E-09 66.6 5.8 57 98-154 8-86 (600)
468 TIGR01394 TypA_BipA GTP-bindin 97.2 0.00092 2E-08 64.4 7.6 82 1-82 88-191 (594)
469 cd04129 Rho2 Rho2 subfamily. 97.2 0.00093 2E-08 54.5 6.4 80 1-80 73-171 (187)
470 PRK07560 elongation factor EF- 97.2 0.00069 1.5E-08 66.9 6.4 23 98-120 21-43 (731)
471 PRK12740 elongation factor G; 97.2 0.00077 1.7E-08 65.9 6.6 52 103-154 1-72 (668)
472 cd01873 RhoBTB RhoBTB subfamil 97.2 0.0011 2.3E-08 54.8 6.4 23 97-119 2-25 (195)
473 PF09439 SRPRB: Signal recogni 97.2 0.00032 7E-09 57.2 3.1 57 98-155 4-62 (181)
474 cd04177 RSR1 RSR1 subgroup. R 97.2 0.0017 3.7E-08 51.7 7.3 78 1-78 73-160 (168)
475 PTZ00132 GTP-binding nuclear p 97.2 0.0021 4.5E-08 53.6 8.0 78 1-78 82-164 (215)
476 KOG0092 GTPase Rab5/YPT51 and 97.1 0.0015 3.3E-08 53.1 6.7 59 93-151 1-63 (200)
477 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.1 0.0019 4.1E-08 54.5 7.5 79 1-79 73-173 (222)
478 TIGR00073 hypB hydrogenase acc 97.1 0.0021 4.5E-08 53.5 7.6 53 27-79 148-204 (207)
479 cd04165 GTPBP1_like GTPBP1-lik 97.1 0.0012 2.7E-08 55.8 6.3 21 99-119 1-21 (224)
480 PLN00043 elongation factor 1-a 97.1 0.0017 3.8E-08 60.4 7.6 71 1-71 109-202 (447)
481 KOG0462 Elongation factor-type 97.1 0.0017 3.8E-08 60.6 7.2 80 1-80 149-233 (650)
482 cd04104 p47_IIGP_like p47 (47- 97.0 0.0034 7.4E-08 51.8 8.0 82 1-84 81-186 (197)
483 PRK10218 GTP-binding protein; 97.0 0.0025 5.5E-08 61.5 8.2 82 1-82 92-195 (607)
484 COG2229 Predicted GTPase [Gene 97.0 0.0039 8.5E-08 50.5 7.9 75 2-76 93-172 (187)
485 KOG0073 GTP-binding ADP-ribosy 97.0 0.002 4.3E-08 51.2 5.8 57 96-153 15-71 (185)
486 PLN03126 Elongation factor Tu; 97.0 0.0043 9.4E-08 58.3 9.1 67 1-67 168-247 (478)
487 cd04167 Snu114p Snu114p subfam 97.0 0.0036 7.9E-08 52.2 7.8 40 1-40 95-136 (213)
488 TIGR00101 ureG urease accessor 96.9 0.0027 6E-08 52.6 6.6 76 1-79 113-193 (199)
489 KOG1144 Translation initiation 96.9 0.009 2E-07 57.8 10.2 117 1-118 564-749 (1064)
490 COG2229 Predicted GTPase [Gene 96.8 0.0029 6.4E-08 51.2 5.8 61 96-156 9-82 (187)
491 PTZ00141 elongation factor 1- 96.8 0.0034 7.3E-08 58.5 7.1 71 1-71 109-202 (446)
492 cd01885 EF2 EF2 (for archaea a 96.8 0.0038 8.2E-08 52.7 6.8 40 1-40 97-138 (222)
493 KOG0075 GTP-binding ADP-ribosy 96.8 0.0078 1.7E-07 47.1 7.8 81 1-81 89-181 (186)
494 COG4917 EutP Ethanolamine util 96.8 0.00084 1.8E-08 51.1 2.4 47 99-154 3-49 (148)
495 KOG0461 Selenocysteine-specifi 96.8 0.0064 1.4E-07 54.0 7.9 78 1-79 94-190 (522)
496 COG1084 Predicted GTPase [Gene 96.8 0.006 1.3E-07 53.8 7.7 80 1-80 248-334 (346)
497 TIGR01425 SRP54_euk signal rec 96.8 0.004 8.8E-08 57.4 7.0 22 97-118 100-121 (429)
498 cd01886 EF-G Elongation factor 96.7 0.0045 9.8E-08 53.8 6.9 41 1-41 88-130 (270)
499 TIGR00750 lao LAO/AO transport 96.7 0.0038 8.3E-08 55.1 6.5 56 25-80 170-236 (300)
500 KOG0098 GTPase Rab2, small G p 96.7 0.0059 1.3E-07 49.7 6.8 58 97-154 6-67 (216)
No 1
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.9e-53 Score=372.19 Aligned_cols=253 Identities=40% Similarity=0.684 Sum_probs=227.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|+|++|+|||.|.+++++.+.+.+.++|+++|+||+||++++..+.|.+++++.+..++++|++++.|+++|.+.+.++
T Consensus 25 aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 25 VDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred CCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 69999999999999999999988888899999999999998877789999998767778999999999999999988888
Q ss_pred HhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCCcH
Q 025200 81 ASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~ 160 (256)
.++......+++.....++++++|+||||||||||+|.+++.+.+++.||+|++.+++.++.+++++||||+++|...+.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 105 LKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred HHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCCCCcH
Confidence 76654433444445567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHHh----cCC--cHHHHH
Q 025200 161 AAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNG--DTHQAA 234 (256)
Q Consensus 161 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~~----~~~--D~~~aa 234 (256)
+.+.++++++++.+..++..+++.++++.+.+. +++.+..+|+++....+.++|++.+|++. ++| |+++||
T Consensus 185 ~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa 261 (287)
T PRK09563 185 EVGLKLALTGAIKDEALDLEEVAIFALEYLSKH---YPERLKERYKLDELPEDILELLEAIARKRGALRKGGEIDYERAS 261 (287)
T ss_pred HHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh---CHHHHHHHhCCCCCCCCHHHHHHHHHHHhCccccCCccCHHHHH
Confidence 999999999999999999999999999999887 68889999999754457889999999874 345 999999
Q ss_pred HHHHHHHHcCCCCceecccCCC
Q 025200 235 FRILTDFRKGKFGWISLERPPR 256 (256)
Q Consensus 235 ~~~l~d~~~G~l~~~~l~~p~~ 256 (256)
+.||+||++||+|+||||.||.
T Consensus 262 ~~~l~d~~~Gklg~~~ld~~~~ 283 (287)
T PRK09563 262 ELLLNEFRNGKLGKITLETPEM 283 (287)
T ss_pred HHHHHHHHcCCCCcEEccCCcc
Confidence 9999999999999999999873
No 2
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=3.2e-52 Score=362.64 Aligned_cols=249 Identities=41% Similarity=0.650 Sum_probs=224.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|+|++|+|||.|.++.++.+.+.+.++|+|+|+||+||++++....|.+++++.+..++++|++++.|.++|.+.+.++
T Consensus 22 aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 22 VDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred CCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 69999999999999999999998888899999999999998877888999987767778999999999999999998888
Q ss_pred HhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCCcH
Q 025200 81 ASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~ 160 (256)
+++.......++.....++++++|+||||||||||+|.+++.+.+++.||+|+..+++.++.+++++||||+++|.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 102 LKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred HHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCcccCCCCch
Confidence 76654444444444567899999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHHh----cCC--cHHHHH
Q 025200 161 AAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNG--DTHQAA 234 (256)
Q Consensus 161 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~~----~~~--D~~~aa 234 (256)
+.++++++++++.+..++..+++.++++.+.++ ++..+...|+++....+..+|++.+|++. ++| |+++||
T Consensus 182 ~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~i~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa 258 (276)
T TIGR03596 182 EVGLKLAATGAIKDEALDLEDVALFLLEYLLEH---YPERLKERYKLDELPEDIVELLEAIAKKRGCLLKGGELDLDRAA 258 (276)
T ss_pred HHHHHHHHhCCcccccCChHHHHHHHHHHHHhh---CHHHHHHHhCcCCCCCCHHHHHHHHHHHhCccccCCccCHHHHH
Confidence 999999999999999999999999999999987 67889999999865557889999999874 344 999999
Q ss_pred HHHHHHHHcCCCCceecc
Q 025200 235 FRILTDFRKGKFGWISLE 252 (256)
Q Consensus 235 ~~~l~d~~~G~l~~~~l~ 252 (256)
+.||+||++||+|++|||
T Consensus 259 ~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 259 EILLNDFRKGKLGRITLE 276 (276)
T ss_pred HHHHHHHHcCCCCceecC
Confidence 999999999999999997
No 3
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=3.6e-49 Score=344.82 Aligned_cols=243 Identities=36% Similarity=0.558 Sum_probs=187.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchh--HHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM--KLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~--~L~ 74 (256)
+||||||+|||+|++++++++++++ ++|++|+||||+||+|++.+++|+.||++++..++|.++....+.. .+.
T Consensus 147 sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~~~~~ 226 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNSKNLQ 226 (435)
T ss_pred hheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccccccc
Confidence 5999999999999999999999987 4699999999999999999999999999999999998766544331 111
Q ss_pred --H-HHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCC
Q 025200 75 --R-LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 151 (256)
Q Consensus 75 --~-~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG 151 (256)
. .-.+.+-.....+...+..+..+++||+|+|||||||+||+|..++.|.+|+.||+|+.+|+++++.++.|+|+||
T Consensus 227 ~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 227 SSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred cchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 0 0001111111112234445678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHHh----cC
Q 025200 152 IIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FN 227 (256)
Q Consensus 152 i~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~~----~~ 227 (256)
+++++.++.. .+++.+++.. .+..+....+...|.++ ..+.+...|.++. ....++|+..+|+++ +|
T Consensus 307 iv~~~~~~~~---~~~Lrn~~~i--~~~~dp~~~v~~iL~~~---~~e~~~~~Y~~~~-~~~~~~Fl~~~ar~~G~~~kG 377 (435)
T KOG2484|consen 307 IVPPSIDEKD---ALALRNCIPI--GKVADPVTPVSCILKRC---SKESRSVLYNIPS-IRATDDFLEKFARRRGLLLKG 377 (435)
T ss_pred eeecCCCccc---hhhhhccccc--ccccCccchHHHHHHHh---hHHHHHHHhcCCC-cchHHHHHHHHHHHHhhhhcC
Confidence 9998877655 3444444422 12233333344455555 4577888999874 335568999998863 56
Q ss_pred C--cHHHHHHHHHHHHHcCCCCceecc
Q 025200 228 G--DTHQAAFRILTDFRKGKFGWISLE 252 (256)
Q Consensus 228 ~--D~~~aa~~~l~d~~~G~l~~~~l~ 252 (256)
| |.+.||..||+||+.|||+|||++
T Consensus 378 G~pd~~~AA~~vl~Dw~~Gki~y~~~p 404 (435)
T KOG2484|consen 378 GIPDVNAAAFAVLNDWRTGKIGYYTLP 404 (435)
T ss_pred CCCcHHHHHHHHHHhhccCceeeeeCC
Confidence 6 999999999999999999999964
No 4
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.1e-47 Score=336.98 Aligned_cols=252 Identities=37% Similarity=0.631 Sum_probs=214.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHc-CCeEEEecCcCCcchhHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-~~~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
+|+|++|+|||+|.+++++.+++++++++.++|+||+||+++..+++|.++|.++ +...++++++.+.+...+...+..
T Consensus 35 ~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 114 (322)
T COG1161 35 VDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEK 114 (322)
T ss_pred CCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999887 567788999998888888876665
Q ss_pred HHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCCc
Q 025200 80 LASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 159 (256)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~ 159 (256)
+..........++..+...++++||+||||||||||+|.+++.+.+|+.||+|++.|++.+..+++|+||||+++|...+
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 115 LSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred HHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccc
Confidence 54444444445565667789999999999999999999999999999999999999999999999999999999999888
Q ss_pred -HHHHHHHHHhccccccccchhHHHHHHHHHH--HhCCCcChhHHHh-hhcCCC-CCCchHHHHHHHHHHh-----cCC-
Q 025200 160 -QAAAIKLAICDDIGERSYDVADVAAILVQML--ARIPTVGITALQN-RYKIDM-DGTCGKTFVQKLALHL-----FNG- 228 (256)
Q Consensus 160 -~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l--~~~~~~~~~~l~~-~y~i~~-~~~~~~~~l~~~~~~~-----~~~- 228 (256)
+..+.+++..++|.+.+++...++.+++..+ ..+ +++.+.. .|.... .....+++++.+|.++ ++|
T Consensus 195 ~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~y~~~~~~~~~~~~~l~~~a~~rg~~l~~~g~ 271 (322)
T COG1161 195 DELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEH---YGEKLNITRYESNPIHRTDPEEFLELIAKKRGWLLLKGGE 271 (322)
T ss_pred hHHHhhccccccccCccccChHHHHHHHHhhhhhhhh---hhHhhCCcccccccccccCHHHHHHHHHHHhhhhhcCCCC
Confidence 8888899999999999999999999888877 333 4444444 444322 1235667888888764 233
Q ss_pred -cHHHHHHHHHHHHHcCCCCceecccCC
Q 025200 229 -DTHQAAFRILTDFRKGKFGWISLERPP 255 (256)
Q Consensus 229 -D~~~aa~~~l~d~~~G~l~~~~l~~p~ 255 (256)
|+++||..+++||+.|++|++++|.++
T Consensus 272 ~d~~~~~~~~~~d~~~gklg~~~~~~~~ 299 (322)
T COG1161 272 PDLERAAETILKDIRNGKLGWFSLEEPE 299 (322)
T ss_pred ccHHHHHHHHHHHHHhCCcceeecCCcc
Confidence 999999999999999999999998653
No 5
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=3.5e-44 Score=312.63 Aligned_cols=233 Identities=28% Similarity=0.479 Sum_probs=194.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC----CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCc-CCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ-LGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~-~~~g~~~L~~ 75 (256)
.||||+|+|||+|+++++..++++++ .|.+|+|+||+||+|....+.|...+.+....+.|.++. ...|...|.+
T Consensus 214 SDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~ 293 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQ 293 (572)
T ss_pred cceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHH
Confidence 49999999999999999999999997 467899999999999999999999998887777665443 3456667888
Q ss_pred HHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 76 LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
+++++..... ....+.|++||||||||||+||+|..+++|.|+++||-|+-+|++.+...|+||||||+++|
T Consensus 294 llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 294 LLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYP 365 (572)
T ss_pred HHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCC
Confidence 8888765432 23468899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHH----hcCC--c
Q 025200 156 RISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH----LFNG--D 229 (256)
Q Consensus 156 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~----~~~~--D 229 (256)
...+... +.+.+.+ ++-.+.+.-+|+-..|.|+ .++.|...|+|+- ..+..+|++++|.+ ++|| |
T Consensus 366 s~dset~---ivLkGvV--RVenv~~pe~yi~~vl~R~---k~ehl~rtYkI~~-w~d~~dfle~La~k~GkLlKGGEPd 436 (572)
T KOG2423|consen 366 SSDSETD---IVLKGVV--RVENVKNPEDYIDGVLERC---KPEHLSRTYKISG-WNDSTDFLEKLAIKQGKLLKGGEPD 436 (572)
T ss_pred CCCchHH---HHhhcee--eeeecCCHHHHHHHHHHhh---hHHHHHhhhCCCc-cccHHHHHHHHHHHhCccccCCCCc
Confidence 7633222 2333333 3334566667777788887 6899999999973 45678999999985 4676 9
Q ss_pred HHHHHHHHHHHHHcCCCCcee
Q 025200 230 THQAAFRILTDFRKGKFGWIS 250 (256)
Q Consensus 230 ~~~aa~~~l~d~~~G~l~~~~ 250 (256)
....|+++|+||+.|||+||.
T Consensus 437 ~~~vsKmvLnDwqRGkiP~FV 457 (572)
T KOG2423|consen 437 LVVVSKMVLNDWQRGKIPFFV 457 (572)
T ss_pred hhHHHHHHhhHhhcCCCceec
Confidence 999999999999999999998
No 6
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=6.6e-41 Score=300.79 Aligned_cols=243 Identities=25% Similarity=0.391 Sum_probs=177.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC----CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCC----cc--h
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG----MG--T 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~----~g--~ 70 (256)
.|+||+|+|||+|+..+++++++++. .|..++++||+||+++++...|.+||++.++.++|.||... .+ .
T Consensus 175 SDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~ 254 (562)
T KOG1424|consen 175 SDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVL 254 (562)
T ss_pred cceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccch
Confidence 49999999999999999999999986 37789999999999999999999999999999999998651 11 1
Q ss_pred hH----------HHH---------HHHHHH---hhhhhhhhc----------cC-CCCCceEEEEECCCCCcHHHHHHHH
Q 025200 71 MK----------LSR---------LAKALA---SDVNVKRRS----------KG-LLPRAVRAGIVGYPNVGKSSLINRL 117 (256)
Q Consensus 71 ~~----------L~~---------~i~~l~---~~~~~~~~~----------~~-~~~~~~~i~~~G~pnvGKSslin~l 117 (256)
.+ -.. .+.+.. .+...-... .+ ..+..++||+||||||||||+||+|
T Consensus 255 ~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaL 334 (562)
T KOG1424|consen 255 KEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINAL 334 (562)
T ss_pred hhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHH
Confidence 00 000 000000 000000000 00 0122589999999999999999999
Q ss_pred hcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCCcHHHHHHHHHhccccccccchhHHHHHH--HH-HHHhCC
Q 025200 118 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAIL--VQ-MLARIP 194 (256)
Q Consensus 118 ~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~--~~-~l~~~~ 194 (256)
.|++.+.|+..||.||++|++.+...+.|+||||+++|.+...... .+++ .++.++++.++. +. +.+++
T Consensus 335 vG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~e---mvl~----GiLPIDQmrd~~~~~~llaerI- 406 (562)
T KOG1424|consen 335 VGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAE---MVLN----GILPIDQLRDHYGAVGLLAERI- 406 (562)
T ss_pred hcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHH---HHHh----cCccHHHhhcccchHHHHHHhc-
Confidence 9999999999999999999999999999999999999988753332 2222 233344443321 12 23344
Q ss_pred CcChhHHHhhhcCC-------CCCCchHHHHHHHHHHh-----c-CCcHHHHHHHHHHHHHcCCCCceecccCC
Q 025200 195 TVGITALQNRYKID-------MDGTCGKTFVQKLALHL-----F-NGDTHQAAFRILTDFRKGKFGWISLERPP 255 (256)
Q Consensus 195 ~~~~~~l~~~y~i~-------~~~~~~~~~l~~~~~~~-----~-~~D~~~aa~~~l~d~~~G~l~~~~l~~p~ 255 (256)
....|...|+.. ..++++.+++..+|+.+ + ..|..|||+.||+||.+|||.|+. .||
T Consensus 407 --P~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~--~PP 476 (562)
T KOG1424|consen 407 --PRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCF--PPP 476 (562)
T ss_pred --CHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeee--CCC
Confidence 456788888521 12357789999999864 1 239999999999999999998887 454
No 7
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=8.9e-39 Score=272.54 Aligned_cols=246 Identities=28% Similarity=0.386 Sum_probs=187.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCc--chhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGM--GTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~--g~~~L~~~i 77 (256)
+|+||||+|||+|++++|+.+.+.+..||+|+|+||+||+++.+....+++++.++. ..++.++.... ++..+...+
T Consensus 47 ~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il 126 (335)
T KOG2485|consen 47 VDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKIL 126 (335)
T ss_pred ccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHH
Confidence 699999999999999999999999999999999999999998777888888876653 33444444332 345555555
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhc-----CCCcccCCCCCceeeeEE-EEe--CCcEEEEec
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGVTRVLKW-VRF--GKDLEFLDS 149 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~-----~~~~~~~~~~g~T~~~~~-~~~--~~~~~l~Dt 149 (256)
..+..+..... +..+...+++|+|.||||||||||++.. ++.+.|++.||+|+.++. +++ ...++++||
T Consensus 127 ~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDT 203 (335)
T KOG2485|consen 127 TILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDT 203 (335)
T ss_pred HHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecC
Confidence 54444332211 1134578999999999999999999864 467889999999999864 666 345999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCC-CCCchHHHHHHHHHHhc--
Q 025200 150 PGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDM-DGTCGKTFVQKLALHLF-- 226 (256)
Q Consensus 150 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~-~~~~~~~~l~~~~~~~~-- 226 (256)
||++.|++.+.|.+++||+|++++++.++...+++|++++|+++..+.. .+.++... ...+.+.-+..++.++.
T Consensus 204 PGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y---~~~l~~~~~~~dd~~~nl~~l~v~~~~~ 280 (335)
T KOG2485|consen 204 PGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSY---VKDLKPGSTPADDIEQNLAVLAVRRTKN 280 (335)
T ss_pred CCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcchh---HHHhccCCCccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999854332 22333322 22233333455554321
Q ss_pred ------CC---------cHHHHHHHHHHHHHcCCCCceecc
Q 025200 227 ------NG---------DTHQAAFRILTDFRKGKFGWISLE 252 (256)
Q Consensus 227 ------~~---------D~~~aa~~~l~d~~~G~l~~~~l~ 252 (256)
.| .+-.+|+.+++-||+|.+|.+.++
T Consensus 281 ~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~~ln 321 (335)
T KOG2485|consen 281 EKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPEELN 321 (335)
T ss_pred ceeeEecCCceeEEechHHHHHHHHHHHHHHhccccceeec
Confidence 12 367899999999999999966554
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=100.00 E-value=1.4e-32 Score=220.03 Aligned_cols=144 Identities=31% Similarity=0.560 Sum_probs=124.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC----CCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L~~ 75 (256)
+|+|++|+|++.|.++.+..+.+.+. ++|+|+|+||+||++++....|.+++++... .++.+|++.+.|.++|.+
T Consensus 9 aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 9 SDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred CCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHH
Confidence 79999999999999988888888775 3899999999999988888889999876542 346789999999999988
Q ss_pred HHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCC
Q 025200 76 LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 152 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 152 (256)
.+.++..... .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++++||||+
T Consensus 89 ~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 89 LLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred HHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 8877644210 12357899999999999999999999999999999999999999999888999999997
No 9
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=100.00 E-value=1.9e-32 Score=222.21 Aligned_cols=143 Identities=38% Similarity=0.652 Sum_probs=114.7
Q ss_pred cEEEEEEecCCCCCCCCHHHHHh--h--CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCc---------
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--------- 68 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~--l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~--------- 68 (256)
|+|++|+|||.|+++.++++.+. + .++|+|+|+||+||++++.+.+|.++|++....+.|.|+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999888 3 3689999999999999999999999998876655565543221
Q ss_pred ----------------chhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCce
Q 025200 69 ----------------GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 132 (256)
Q Consensus 69 ----------------g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T 132 (256)
|.+.+.+.++++ ...+.....++++++|+||||||||||+|.+++.+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNY--------SRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHH--------hhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 111111111111 11122345689999999999999999999999999999999999
Q ss_pred eeeEEEEeCCcEEEEecCCC
Q 025200 133 RVLKWVRFGKDLEFLDSPGI 152 (256)
Q Consensus 133 ~~~~~~~~~~~~~l~DtPGi 152 (256)
++.+++.++.+++++||||+
T Consensus 153 ~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEeCCCEEEEECcCC
Confidence 99999999889999999997
No 10
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.98 E-value=3.2e-31 Score=211.80 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=124.9
Q ss_pred cEEEEEEecCCCCCCCCHHHH-Hhh--CCCCEEEEEecCCCCChHHHHHHHHHHHHc-CCeEEEecCcCCcchhHHHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~-~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-~~~vi~~sa~~~~g~~~L~~~i 77 (256)
|++++|+|++.|.++.+..+. ..+ .++|.|+|+||+||+++++..+|..++++. +..++++|++++.|++.|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 899999999999999988877 343 378999999999999888788898777654 4568899999999999998877
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 152 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 152 (256)
.+...+........+......+++++|.|||||||++|+|.+...+.+++.||+|++++++..+.+++++||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 654322222222222234578899999999999999999999988899999999999999999889999999997
No 11
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.97 E-value=3.3e-30 Score=202.88 Aligned_cols=126 Identities=36% Similarity=0.667 Sum_probs=114.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC----CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 76 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~ 76 (256)
+|+|++|+|+|.|.++.+..+.+++. ++|+++|+||+||++++...+|.+++++.+..++++|++++.+
T Consensus 12 aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~------- 84 (141)
T cd01857 12 SDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA------- 84 (141)
T ss_pred CCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-------
Confidence 69999999999999999888888773 6899999999999988888899999988888889999987643
Q ss_pred HHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 77 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 77 i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
+++++|.||||||||+|+|.++....++..||+|++.+++.++.++.++|||||++|
T Consensus 85 ----------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 85 ----------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred ----------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 479999999999999999999988899999999999999999889999999999876
No 12
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.97 E-value=1.9e-29 Score=204.72 Aligned_cols=152 Identities=47% Similarity=0.864 Sum_probs=129.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|+|++|+|++.|..+.+..+.+.+.++|.++|+||+||++++...+|.++++..+..++++|++++.|+++|.+.+.+.
T Consensus 20 aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 20 VDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred CCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 69999999999999888877777777899999999999987776778988888777778999999999999999888876
Q ss_pred HhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 81 ASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
.+.... ..+.+..+..++++++|.||||||||+|+|.+...+.+++.||+|++++.+.++.++.++||||++
T Consensus 100 l~~~~~-~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 100 LKDIEK-LKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred HHHHhh-hhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 543221 122233445689999999999999999999998888899999999999998888889999999984
No 13
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.96 E-value=1.5e-27 Score=190.51 Aligned_cols=142 Identities=35% Similarity=0.568 Sum_probs=120.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+|++++|+|++.|....+..+.+++ .++|+++|+||+|+.+.+....|..+.+..+.+++++|++++.|+++|.+.+.
T Consensus 13 aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 13 SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIK 92 (156)
T ss_pred CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHH
Confidence 6999999999999888887776654 36899999999999877666677655455566789999999999999999888
Q ss_pred HHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCC
Q 025200 79 ALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 152 (256)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 152 (256)
++.+.. ....+++++|.|||||||++|+|.+.....+++.+|+|++.+++..+.++.++||||+
T Consensus 93 ~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 93 ELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred HHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 776531 2356789999999999999999999888889999999999998888888999999997
No 14
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.95 E-value=1.9e-27 Score=196.05 Aligned_cols=139 Identities=32% Similarity=0.430 Sum_probs=111.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHH----HHHHHHHH--HHcC---CeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYF--AKQG---TKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~----~~~w~~~~--~~~~---~~vi~~sa~~~~g~~ 71 (256)
+|+|++|+|++++..+.++.+.....++|+++|+||+|+.+++. .+.|.+.+ +..+ ..++++||+++.|++
T Consensus 35 ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~ 114 (190)
T cd01855 35 KALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVE 114 (190)
T ss_pred CcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHH
Confidence 68999999999998887777754445789999999999986532 34454211 2222 257889999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCC--------CcccCCCCCceeeeEEEEeCCc
Q 025200 72 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVTRVLKWVRFGKD 143 (256)
Q Consensus 72 ~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~--------~~~~~~~~g~T~~~~~~~~~~~ 143 (256)
+|.+.+.+..+. ..+++++|.||||||||||+|.+.. ...++..||||++.+.+.++.+
T Consensus 115 eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~ 181 (190)
T cd01855 115 ELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNG 181 (190)
T ss_pred HHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCC
Confidence 998888766531 3468999999999999999999854 3467899999999999999878
Q ss_pred EEEEecCCC
Q 025200 144 LEFLDSPGI 152 (256)
Q Consensus 144 ~~l~DtPGi 152 (256)
+.++|||||
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 999999997
No 15
>PRK13796 GTPase YqeH; Provisional
Probab=99.94 E-value=5.1e-26 Score=205.07 Aligned_cols=177 Identities=24% Similarity=0.350 Sum_probs=131.2
Q ss_pred EEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCCh----HHHHHHHHHHH-HcCC---eEEEecCcCCcchhHHH
Q 025200 3 VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 3 vvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~~~-~~~~---~vi~~sa~~~~g~~~L~ 74 (256)
+|++|+|+.++.+++.+.+.++.+++|+++|+||+||+++ +.+.+|.+++. +.|. .++++||+++.|+++|.
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~ 151 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELL 151 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHH
Confidence 8999999999999999999888888999999999999864 34567877554 3443 57889999999999988
Q ss_pred HHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcC-----CCcccCCCCCceeeeEEEEeCCcEEEEec
Q 025200 75 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFGKDLEFLDS 149 (256)
Q Consensus 75 ~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~-----~~~~~~~~~g~T~~~~~~~~~~~~~l~Dt 149 (256)
+.+.+... ..++++||.||||||||||+|.+. +.+.++..||||++.+++.++.+..++||
T Consensus 152 ~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DT 217 (365)
T PRK13796 152 EAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDT 217 (365)
T ss_pred HHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEEC
Confidence 87765421 136899999999999999999854 34568999999999999999888999999
Q ss_pred CCCCCCC-CC---cHHHHHHHHHhccccccccchhHHHHHHHHHHHhC
Q 025200 150 PGIIPMR-IS---DQAAAIKLAICDDIGERSYDVADVAAILVQMLARI 193 (256)
Q Consensus 150 PGi~~~~-~~---~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~ 193 (256)
||++.+. +. +.+....+.....+++..+....-..+++..|.|+
T Consensus 218 PGi~~~~~~~~~l~~~~l~~~~p~k~i~p~~~~l~~gq~l~~ggl~r~ 265 (365)
T PRK13796 218 PGIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLNEEQTLFLGGLARF 265 (365)
T ss_pred CCccccchhhhcCCHHHHhhcCCCcccCceEEEECCCCEEEEeeEEEE
Confidence 9997541 11 22222233333445555544444444444444443
No 16
>PRK12289 GTPase RsgA; Reviewed
Probab=99.94 E-value=7.7e-26 Score=202.03 Aligned_cols=139 Identities=23% Similarity=0.331 Sum_probs=116.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.|++|+|+.+|.... ..+.+++ .+.|.++|+||+||+++++.+.|.++|+..|..++++|++++.|+++|.+
T Consensus 90 vD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 90 ADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred CCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 69999999998775332 2344443 26899999999999988778899998988888899999999999888776
Q ss_pred HHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC-------ceeeeEEEEeCCcEEEEe
Q 025200 76 LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDLEFLD 148 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~l~D 148 (256)
.+.. ..++++|.||||||||||+|.+.....++..+| ||++.+++.+..+..|+|
T Consensus 169 ~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liD 230 (352)
T PRK12289 169 QLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLAD 230 (352)
T ss_pred hhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEe
Confidence 5531 136999999999999999999998889999988 999999999977789999
Q ss_pred cCCCCCCCCC
Q 025200 149 SPGIIPMRIS 158 (256)
Q Consensus 149 tPGi~~~~~~ 158 (256)
||||..+.+.
T Consensus 231 TPG~~~~~l~ 240 (352)
T PRK12289 231 TPGFNQPDLD 240 (352)
T ss_pred CCCccccccc
Confidence 9999987663
No 17
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.94 E-value=1.3e-25 Score=202.09 Aligned_cols=141 Identities=28% Similarity=0.394 Sum_probs=118.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChH----HHHHHHH-HHHHcCC---eEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~-~~~~~~~---~vi~~sa~~~~g~~~ 72 (256)
+|+|++|+|+.++.+++.+++.+.+.++|+++|+||+||++++ ...+|.+ ++++.+. .++++||+++.|+++
T Consensus 64 ~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~e 143 (360)
T TIGR03597 64 NALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDE 143 (360)
T ss_pred CcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHH
Confidence 4799999999999999999999888889999999999998653 4566764 4455554 478899999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCC-----CcccCCCCCceeeeEEEEeCCcEEEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVLKWVRFGKDLEFL 147 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~-----~~~~~~~~g~T~~~~~~~~~~~~~l~ 147 (256)
+.+.+.++.. ..++++||.||||||||||+|.+.. .+.+++.||+|++.+.+.++.++.++
T Consensus 144 L~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~ 209 (360)
T TIGR03597 144 LLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLY 209 (360)
T ss_pred HHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEE
Confidence 8887765421 1368999999999999999999853 46789999999999999988889999
Q ss_pred ecCCCCCC
Q 025200 148 DSPGIIPM 155 (256)
Q Consensus 148 DtPGi~~~ 155 (256)
||||+..+
T Consensus 210 DtPG~~~~ 217 (360)
T TIGR03597 210 DTPGIINS 217 (360)
T ss_pred ECCCCCCh
Confidence 99999865
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=198.55 Aligned_cols=150 Identities=25% Similarity=0.309 Sum_probs=119.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
||+||+|+|++..++..+..+.+++. +||+|+|+||+|-...+ ....+ |.+.| .+.+.+||.+|.|+.+|.+.+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e--~~~~e-fyslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE--ELAYE-FYSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh--hhHHH-HHhcCCCCceEeehhhccCHHHHHHHH
Confidence 79999999999999999999998886 58999999999975322 22223 33445 567889999999999999988
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE---eCCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~ 154 (256)
.+.++ ........+ ...+++|+++|.||||||||+|+|+|...+.+++.||||++..... -+..+.++||.|+..
T Consensus 161 ~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRr 238 (444)
T COG1160 161 LELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRR 238 (444)
T ss_pred HhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCc
Confidence 87764 221111111 1257999999999999999999999999999999999999975433 367799999999986
Q ss_pred C
Q 025200 155 M 155 (256)
Q Consensus 155 ~ 155 (256)
.
T Consensus 239 k 239 (444)
T COG1160 239 K 239 (444)
T ss_pred c
Confidence 4
No 19
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.93 E-value=9.2e-25 Score=186.89 Aligned_cols=139 Identities=23% Similarity=0.298 Sum_probs=111.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHHH-HHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~-~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|.++.|.|+++|..+.+. +.+++ .+.|.++|+||+||.+.... .+|.+.|++.+.+++++||++|.|+++|.
T Consensus 37 ~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 37 IDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred CCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 6899999999999866433 34443 36899999999999865543 47888888888889999999999988877
Q ss_pred HHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-------CceeeeEEEEeCCcEEEE
Q 025200 75 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKDLEFL 147 (256)
Q Consensus 75 ~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~l~ 147 (256)
+.+.. -.++++|.||||||||||+|.+.....++..+ +||++.+++.+ .+..++
T Consensus 116 ~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~li 176 (245)
T TIGR00157 116 EALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIA 176 (245)
T ss_pred hhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEE
Confidence 65431 14799999999999999999998777666554 49999999998 567999
Q ss_pred ecCCCCCCCCCc
Q 025200 148 DSPGIIPMRISD 159 (256)
Q Consensus 148 DtPGi~~~~~~~ 159 (256)
|||||..+.+.+
T Consensus 177 DtPG~~~~~l~~ 188 (245)
T TIGR00157 177 DTPGFNEFGLWH 188 (245)
T ss_pred eCCCccccCCCC
Confidence 999999877653
No 20
>PRK12288 GTPase RsgA; Reviewed
Probab=99.90 E-value=6.7e-23 Score=183.07 Aligned_cols=138 Identities=24% Similarity=0.332 Sum_probs=109.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChH---HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~---~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.++.|.+.. |..+. ..+.+++ .+.|.++|+||+||++.. ...+|.++|++.+.+++++|++++.|+++
T Consensus 121 vD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gide 198 (347)
T PRK12288 121 IDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEE 198 (347)
T ss_pred ccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHH
Confidence 58877777754 43332 2334443 257999999999998754 35678888888888999999999999988
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC-------ceeeeEEEEeCCcEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDLE 145 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~ 145 (256)
|.+.+... .++++|.||||||||||+|.+.....++..++ ||++.+++.++.+..
T Consensus 199 L~~~L~~k------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~ 260 (347)
T PRK12288 199 LEAALTGR------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGD 260 (347)
T ss_pred HHHHHhhC------------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCCE
Confidence 87765421 26899999999999999999998888887775 899999999987888
Q ss_pred EEecCCCCCCCCC
Q 025200 146 FLDSPGIIPMRIS 158 (256)
Q Consensus 146 l~DtPGi~~~~~~ 158 (256)
|+|||||....+.
T Consensus 261 liDTPGir~~~l~ 273 (347)
T PRK12288 261 LIDSPGVREFGLW 273 (347)
T ss_pred EEECCCCCcccCC
Confidence 9999999887654
No 21
>PRK00098 GTPase RsgA; Reviewed
Probab=99.89 E-value=1.2e-22 Score=178.64 Aligned_cols=138 Identities=23% Similarity=0.322 Sum_probs=110.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCC-ChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~-~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++|+|++.|....+ .+.+++ .++|.++|+||+||. +.+...+|.+++++.+.+++++|++++.|+++|.
T Consensus 81 iD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 81 VDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELK 159 (298)
T ss_pred CCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHH
Confidence 699999999998865533 223332 268999999999997 4455677888888778889999999999988777
Q ss_pred HHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC-------ceeeeEEEEeCCcEEEE
Q 025200 75 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDLEFL 147 (256)
Q Consensus 75 ~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~l~ 147 (256)
+.+. ...++++|.||||||||||+|.+.....++..++ ||++.+++.+..+.+++
T Consensus 160 ~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~ 221 (298)
T PRK00098 160 PLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLI 221 (298)
T ss_pred hhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEE
Confidence 6542 1257999999999999999999988777776664 89889998888788999
Q ss_pred ecCCCCCCCC
Q 025200 148 DSPGIIPMRI 157 (256)
Q Consensus 148 DtPGi~~~~~ 157 (256)
||||+....+
T Consensus 222 DtpG~~~~~~ 231 (298)
T PRK00098 222 DTPGFSSFGL 231 (298)
T ss_pred ECCCcCccCC
Confidence 9999986544
No 22
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.89 E-value=3e-22 Score=175.21 Aligned_cols=137 Identities=22% Similarity=0.281 Sum_probs=108.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|++.|..+. ..+++++ .++|.++|+||+||.++.....|..++.+.+.+++++|++++.|+++|..
T Consensus 79 vD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 79 VDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred CCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHh
Confidence 69999999999987321 2344443 36899999999999887655667777777788899999999999887776
Q ss_pred HHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-------CCceeeeEEEEeCCcEEEEe
Q 025200 76 LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDLEFLD 148 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-------~g~T~~~~~~~~~~~~~l~D 148 (256)
.+.. -.++++|.+|||||||||+|.+.....++.. ++||++.+++.+..+..++|
T Consensus 158 ~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liD 219 (287)
T cd01854 158 YLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLID 219 (287)
T ss_pred hhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEE
Confidence 5431 2479999999999999999998766555433 45899999999876779999
Q ss_pred cCCCCCCC
Q 025200 149 SPGIIPMR 156 (256)
Q Consensus 149 tPGi~~~~ 156 (256)
|||+....
T Consensus 220 tPG~~~~~ 227 (287)
T cd01854 220 TPGFREFG 227 (287)
T ss_pred CCCCCccC
Confidence 99997654
No 23
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.1e-20 Score=176.14 Aligned_cols=148 Identities=26% Similarity=0.256 Sum_probs=108.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+...+. +..+++ ..+ ...+++||++|.|+++|.+.+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i 194 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDLLDAV 194 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHH
Confidence 69999999999987766666666654 689999999999864321 122222 223 245789999999999998877
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 154 (256)
.+...+... ........++|+++|.||||||||+|+|.+.....+++.||+|++... +.. +..+.++||||+..
T Consensus 195 ~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 195 LAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred Hhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 655433111 111123468999999999999999999999887788999999998642 222 44688999999864
No 24
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3e-20 Score=171.61 Aligned_cols=149 Identities=26% Similarity=0.269 Sum_probs=111.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+.+.+. ...++ .+.+ ..++.+||++|.|++++.+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I 157 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--DAYEF-YSLGLGEPYPISAEHGRGIGDLLDAI 157 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--hHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHH
Confidence 69999999999988877666666665 689999999999765321 22222 2334 347889999999999888776
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE---eCCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~ 154 (256)
.+...... ........++|+++|.||||||||+|+|.+.....++..||+|++..... -+..+.++||||+..
T Consensus 158 ~~~~~~~~----~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 158 LEELPEEE----EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred HhhCCccc----cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 65322111 00112357999999999999999999999998888999999999875332 245689999999976
Q ss_pred CC
Q 025200 155 MR 156 (256)
Q Consensus 155 ~~ 156 (256)
..
T Consensus 234 ~~ 235 (435)
T PRK00093 234 KG 235 (435)
T ss_pred Cc
Confidence 43
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=3.8e-20 Score=170.53 Aligned_cols=149 Identities=28% Similarity=0.341 Sum_probs=114.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|+|++|+|++.+++..+..+.+++. ++|+++|+||+|+.+.+.. ..+ +.+.| .+++.+||++|.|+.++.+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 69999999999988877777777775 6899999999999765432 122 33445 368899999999999998887
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+........ .......++|+++|.||||||||+|+|.+.....+++.||+|++.....+ +..+.++||||+..
T Consensus 156 ~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 156 LELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred HHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 7655432110 11123468999999999999999999999888888999999998643332 45689999999975
Q ss_pred C
Q 025200 155 M 155 (256)
Q Consensus 155 ~ 155 (256)
.
T Consensus 233 ~ 233 (429)
T TIGR03594 233 K 233 (429)
T ss_pred c
Confidence 4
No 26
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=7.5e-20 Score=178.00 Aligned_cols=150 Identities=25% Similarity=0.237 Sum_probs=109.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++|+|+|++.+++..+..+.+++. ++|+++|+||+|+...... ..+++. .+ ...+++||++|.|+++|.+.+
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~~~-lg~~~~~~iSA~~g~GI~eLl~~i 431 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEFWK-LGLGEPYPISAMHGRGVGDLLDEA 431 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHHHH-cCCCCeEEEECCCCCCchHHHHHH
Confidence 69999999999887776666766664 7899999999998654221 122222 23 346789999999999998877
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE---EeCCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV---RFGKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~---~~~~~~~l~DtPGi~~ 154 (256)
.+....... ..+.-......+|+++|.||||||||+|+|.+.+...++..||+|++.... .-+..+.++||||+..
T Consensus 432 ~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 432 LDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred HHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 665533111 000001124579999999999999999999998877789999999987432 2245688999999864
No 27
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.7e-19 Score=154.44 Aligned_cols=138 Identities=25% Similarity=0.330 Sum_probs=107.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHHHH--HHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~--~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|-++.|+-+-.|..+.+ .+.+++ .+-.-++|+||+||++.+... ++...++..|..++++|++++.+.+.|
T Consensus 80 ~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l 158 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL 158 (301)
T ss_pred cceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH
Confidence 356677888888866532 344443 255678889999999887655 577788889999999999999998877
Q ss_pred HHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-------CCceeeeEEEEeCCcEEE
Q 025200 74 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDLEF 146 (256)
Q Consensus 74 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-------~g~T~~~~~~~~~~~~~l 146 (256)
.+.++. . ..+++|.+|||||||||+|.+.....++.. -+||++...+.+..+.++
T Consensus 159 ~~~l~~-----------------~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~i 220 (301)
T COG1162 159 AELLAG-----------------K-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWI 220 (301)
T ss_pred HHHhcC-----------------C-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEE
Confidence 665431 1 358999999999999999998766555433 369999999999888999
Q ss_pred EecCCCCCCCC
Q 025200 147 LDSPGIIPMRI 157 (256)
Q Consensus 147 ~DtPGi~~~~~ 157 (256)
+|||||....+
T Consensus 221 iDTPGf~~~~l 231 (301)
T COG1162 221 IDTPGFRSLGL 231 (301)
T ss_pred EeCCCCCccCc
Confidence 99999988766
No 28
>PRK01889 GTPase RsgA; Reviewed
Probab=99.78 E-value=2.3e-18 Score=154.85 Aligned_cols=141 Identities=20% Similarity=0.279 Sum_probs=103.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChH-HHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~-~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|.++.|+++..++.. ..+++++ .+.+.++|+||+||+++. ...+|...+ ..+.+++++|++++.|++.|.
T Consensus 113 vD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 113 VDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred CCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHHH
Confidence 6999999999633332 2444443 257789999999998753 222343333 456789999999999988877
Q ss_pred HHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-------CCceeeeEEEEeCCcEEEE
Q 025200 75 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDLEFL 147 (256)
Q Consensus 75 ~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-------~g~T~~~~~~~~~~~~~l~ 147 (256)
+.+.. .-+++++|.||+|||||+|+|.+.....++.. .++|+..++..+..+..++
T Consensus 190 ~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 190 AWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLI 252 (356)
T ss_pred HHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeec
Confidence 66531 12589999999999999999998766555433 2477777888887778999
Q ss_pred ecCCCCCCCCCcHH
Q 025200 148 DSPGIIPMRISDQA 161 (256)
Q Consensus 148 DtPGi~~~~~~~~~ 161 (256)
||||+..+.+.+.+
T Consensus 253 DtpG~~~~~l~~~~ 266 (356)
T PRK01889 253 DTPGMRELQLWDAE 266 (356)
T ss_pred CCCchhhhcccCch
Confidence 99999877665543
No 29
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.66 E-value=2.8e-16 Score=125.20 Aligned_cols=95 Identities=25% Similarity=0.319 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCccc
Q 025200 46 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 125 (256)
Q Consensus 46 ~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~ 125 (256)
++|.+.|++.|.+++++|++++.|+++|.+.++. -.++++|.+|||||||||+|.+.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 5789999999999999999999998888765432 2579999999999999999999765554
Q ss_pred CC-------CCCceeeeEEEEeCCcEEEEecCCCCCCCCC
Q 025200 126 AP-------RPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 158 (256)
Q Consensus 126 ~~-------~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~ 158 (256)
+. --+||++.+.+.+..+..+||||||....+.
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 32 2368999999999889999999999876655
No 30
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.61 E-value=1.3e-15 Score=121.06 Aligned_cols=61 Identities=36% Similarity=0.540 Sum_probs=46.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCCCCc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 159 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~ 159 (256)
++|+++|.||||||||+|+|+|.+ ..+++.||+|.+.....+ +..+.++||||+......+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 479999999999999999999988 689999999999764333 4579999999998754443
No 31
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.8e-15 Score=129.01 Aligned_cols=68 Identities=29% Similarity=0.519 Sum_probs=57.3
Q ss_pred CCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCCCCcHH
Q 025200 93 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQA 161 (256)
Q Consensus 93 ~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~ 161 (256)
..+...+|.++|+||||||||+++|++.+. .++++|+|||.++.-+. +..+++|||||++...+++..
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 345678999999999999999999998776 89999999999986665 346999999999987665433
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2.8e-14 Score=129.03 Aligned_cols=62 Identities=35% Similarity=0.485 Sum_probs=54.9
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 155 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 155 (256)
...+++++++|.||||||||+|+|.++..+.|++.||||||+...++ +..+.++||.|+...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 45689999999999999999999999999999999999999965444 456899999999853
No 33
>COG1159 Era GTPase [General function prediction only]
Probab=99.51 E-value=2.8e-14 Score=122.42 Aligned_cols=59 Identities=34% Similarity=0.585 Sum_probs=51.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEe--CCcEEEEecCCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~--~~~~~l~DtPGi~~~~ 156 (256)
.-|+++|.||||||||+|+|.|.+.+.+|+.|.|||+. +.+.. +..+.++||||+..|+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 46899999999999999999999999999999999985 33333 4569999999999874
No 34
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=6.4e-14 Score=114.22 Aligned_cols=62 Identities=29% Similarity=0.529 Sum_probs=55.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 158 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~ 158 (256)
..-|+++|.+|||||||||+|++++ .+++|..||.|+.+.++.++..+.++|.||.-.....
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVP 86 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCC
Confidence 4569999999999999999999966 5899999999999999999988999999999876544
No 35
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.47 E-value=1e-13 Score=104.91 Aligned_cols=58 Identities=38% Similarity=0.633 Sum_probs=49.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~~ 156 (256)
+|+++|.||+|||||+|+|++.+.+.++..|++|++.... .. +..+.++||||+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 5899999999999999999998888999999999998442 33 3457899999998754
No 36
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=7.3e-14 Score=126.04 Aligned_cols=59 Identities=39% Similarity=0.590 Sum_probs=51.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE---eCCcEEEEecCCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPMR 156 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~ 156 (256)
..|++||.||||||||+|+|.+++.+.|++.||+|||..+-. .+..+.+|||+|+.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence 469999999999999999999999999999999999975432 25679999999998654
No 37
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=9.1e-13 Score=119.37 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=52.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+++|+++|.||||||||+|+|.++....|++.||||||.....+ +..+.|+||.|+..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 468999999999999999999999999999999999999754333 55699999999997
No 38
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.33 E-value=4.8e-12 Score=104.70 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=49.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCC-CCCceeeeEEEEe---CCcEEEEecCCCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~ 157 (256)
++|+++|.||||||||+|+|.|++.+.++. .+|+|+.++.... +..+.++||||+.....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 369999999999999999999988766653 5789998775432 45699999999997643
No 39
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.32 E-value=3.1e-12 Score=111.17 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=48.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE-EEEe--CCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtPGi~~~ 155 (256)
+|+++|.||||||||+|+|.+.+.+.+++.|+||++.. .+.. +..+.++||||+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999999888999999999853 2222 345889999999865
No 40
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.31 E-value=1.3e-11 Score=110.92 Aligned_cols=58 Identities=29% Similarity=0.339 Sum_probs=48.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe--CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtPGi~~ 154 (256)
..++|+++|+||||||||+|+|++.. ..+++.||+|++... +.+ +..+.++||||++.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45899999999999999999999977 567889999988753 333 34689999999965
No 41
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=4.4e-12 Score=108.96 Aligned_cols=62 Identities=26% Similarity=0.510 Sum_probs=53.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC---CcEEEEecCCCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMR 156 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~~ 156 (256)
.+.++|+++|.||||||||.|.+.|.+.+.++..+.|||+-..--+. ..+.++||||++.+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 45689999999999999999999999999999999999986544332 358899999999764
No 42
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.28 E-value=9.9e-12 Score=106.59 Aligned_cols=62 Identities=26% Similarity=0.344 Sum_probs=52.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
..+++|+++|.+|||||||+|+|.+...+.++..+++|+..+.+.. +..+.++||||+....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence 4578999999999999999999999998888888888888775543 4468999999998753
No 43
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=5.9e-12 Score=114.54 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=48.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--eC--CcEEEEecCCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR 156 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~~--~~~~l~DtPGi~~~~ 156 (256)
.|++||+||||||||+|+|++.+. .++++|+||+...... .. ..+.++||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 699999999999999999998775 8999999999876433 33 359999999998653
No 44
>PTZ00258 GTP-binding protein; Provisional
Probab=99.25 E-value=1.2e-11 Score=111.92 Aligned_cols=59 Identities=36% Similarity=0.490 Sum_probs=48.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--------------------CCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~l~DtPGi~~~ 155 (256)
..++|++||.||||||||+|+|++.+ +.++++||+|++.+.-.+ +..+.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46789999999999999999998776 589999999988654222 124899999999864
No 45
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.24 E-value=1.2e-11 Score=110.79 Aligned_cols=57 Identities=40% Similarity=0.546 Sum_probs=47.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC------------------cEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK------------------DLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~------------------~~~l~DtPGi~~~ 155 (256)
++|++||+||||||||+|+|++.+ +.++++||+|++.. .+.+.. .+.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 689999999999999999999988 68999999998865 223221 4899999999864
No 46
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=1.2e-11 Score=107.27 Aligned_cols=55 Identities=42% Similarity=0.524 Sum_probs=45.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeCC------------------cEEEEecCCCCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM 155 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~~------------------~~~l~DtPGi~~~ 155 (256)
|++||.||||||||+|+|++.+. .++++||+|++... +.+.. .+.++||||+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999999887 89999999988653 22221 3899999999964
No 47
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.23 E-value=4.5e-11 Score=110.89 Aligned_cols=59 Identities=36% Similarity=0.486 Sum_probs=50.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~ 154 (256)
..++|+++|+||||||||+|+|.+.+.+.+++.||+|++.... .+ +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 4689999999999999999999998877899999999987533 33 34689999999964
No 48
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.7e-10 Score=108.87 Aligned_cols=59 Identities=34% Similarity=0.559 Sum_probs=49.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
..+|+++|.||||||||+|+|+|.+. .++|.||+|.+...-.. +..+.++|.||+.+-.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~ 64 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT 64 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC
Confidence 35699999999999999999998765 89999999988754333 5569999999998653
No 49
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.22 E-value=7.4e-11 Score=102.32 Aligned_cols=60 Identities=33% Similarity=0.489 Sum_probs=50.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE---EEEeCCcEEEEecCCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~---~~~~~~~~~l~DtPGi~~~ 155 (256)
....++++||+||||||||+|+|++.+. .++++|+||.... ..+-+-.++++|+||++..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccC
Confidence 4567999999999999999999998765 7899999998863 2333667999999999864
No 50
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.21 E-value=3.8e-11 Score=97.78 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=52.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
+..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|++..++..+.++.++||||+...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 46789999999999999999999875 5677889999999887776778999999998654
No 51
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.21 E-value=1.1e-11 Score=112.46 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=57.6
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC---CcEEEEecCCCCCCCCCcHHHHHHHHH
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQAAAIKLAI 168 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~~~~~~~~~~~l~~ 168 (256)
.+..-+..+||+|||||||++|.++..+. .+.++|+||+.+-..+++ ..++++|||||+.+.+++.....+.++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 45567899999999999999999996554 799999999987544443 347899999999988877555444443
No 52
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.19 E-value=4.6e-11 Score=98.16 Aligned_cols=60 Identities=32% Similarity=0.527 Sum_probs=52.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
...+|+++|.+|||||||+|+|.+.+ ...+++.+|+|+.+++...+..+.++||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 45789999999999999999999875 6678889999999888777778999999998654
No 53
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.19 E-value=7.8e-11 Score=103.12 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=48.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE---eCCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~ 155 (256)
..++|+++|.+||||||++|+|.|+..+.++..++.|....... .+..+.+|||||+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 46899999999999999999999998888888877665543222 2557999999999875
No 54
>PRK11058 GTPase HflX; Provisional
Probab=99.18 E-value=1.1e-10 Score=107.55 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=46.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeC--CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~--~~~~l~DtPGi~~ 154 (256)
.+|++||+||||||||+|+|++.+.. +++.||+|++... +.++ ..+.++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 57999999999999999999987764 8899999998754 3333 2678999999965
No 55
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.17 E-value=1e-10 Score=108.17 Aligned_cols=61 Identities=38% Similarity=0.478 Sum_probs=51.2
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-CCcEEEEecCCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~ 155 (256)
...++|+++|.||||||||+|+|.+.....+++.||+|++..... + +..+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 457899999999999999999999988788999999999875333 3 345889999999653
No 56
>PRK15494 era GTPase Era; Provisional
Probab=99.15 E-value=1.3e-10 Score=104.14 Aligned_cols=60 Identities=30% Similarity=0.583 Sum_probs=50.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 155 (256)
+..+|+++|.||||||||+|+|.+.+...+++.|++|++... +.. +..+.++||||+..+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 356899999999999999999999988888999999988643 222 446899999999754
No 57
>PRK04213 GTP-binding protein; Provisional
Probab=99.14 E-value=1e-10 Score=96.80 Aligned_cols=56 Identities=38% Similarity=0.568 Sum_probs=47.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+.. ..++..||+|+....+..+ ++.++||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccc
Confidence 35789999999999999999999876 5688899999987766555 79999999974
No 58
>COG2262 HflX GTPases [General function prediction only]
Probab=99.14 E-value=2.3e-10 Score=102.27 Aligned_cols=114 Identities=25% Similarity=0.243 Sum_probs=76.1
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e--CCcEEEEecCCCCCCCCCcHHHHHHHHHhc
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIPMRISDQAAAIKLAICD 170 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~ 170 (256)
..-..|++|||+|+|||||+|+|++... .+.+..+.|.+....+ + +..+.|-||.||+..-++....+++-.+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3457899999999999999999997554 6677777666654332 3 356999999999988777776776654432
Q ss_pred ----cccccccchhHH-----HHHHHHHHHhCCCcChhHHHhhhcCCC
Q 025200 171 ----DIGERSYDVADV-----AAILVQMLARIPTVGITALQNRYKIDM 209 (256)
Q Consensus 171 ----~i~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~l~~~y~i~~ 209 (256)
++.-.++|..+. ..-+...|..+....++.+...+|+|.
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 222233333332 233455666665445667777788773
No 59
>PRK00089 era GTPase Era; Reviewed
Probab=99.13 E-value=1e-10 Score=102.63 Aligned_cols=60 Identities=35% Similarity=0.569 Sum_probs=49.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE-EEe-C-CcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~-~~~-~-~~~~l~DtPGi~~~~ 156 (256)
.-.|+++|.||||||||+|+|.|.+.+.+++.|++|++... +.. + ..+.++||||+..+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 34689999999999999999999999899999999987542 222 2 468999999997654
No 60
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.12 E-value=8.4e-11 Score=108.49 Aligned_cols=56 Identities=43% Similarity=0.631 Sum_probs=48.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|.||||||||+|+|.++..+.+++.||+|++.+.... +..+.++||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC
Confidence 379999999999999999999888889999999998764432 45689999999854
No 61
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=1.3e-10 Score=103.72 Aligned_cols=57 Identities=35% Similarity=0.447 Sum_probs=47.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe--CCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtPGi~~~ 155 (256)
..|++||+||||||||+|+|++.+. .++++|+||+..+. +.. ...+.++||||++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 3589999999999999999998664 68999999998764 333 246999999999864
No 62
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=1.5e-10 Score=106.14 Aligned_cols=55 Identities=33% Similarity=0.489 Sum_probs=47.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~~ 154 (256)
.|++||+||||||||||+|++.+. +++++|+||+..+...+ +..+.++||||++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 699999999999999999998764 67899999998764433 35699999999975
No 63
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=1.5e-10 Score=107.68 Aligned_cols=57 Identities=35% Similarity=0.495 Sum_probs=47.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~ 155 (256)
..|++||+||||||||||+|++.+. .++++|+||+..... .. +..++++||||++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 4799999999999999999998765 679999999987543 33 346899999999854
No 64
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.06 E-value=2.1e-10 Score=99.19 Aligned_cols=56 Identities=32% Similarity=0.404 Sum_probs=47.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~~~ 155 (256)
.|++||+||+|||||+|+|.+.+. +++.+++||...+.-.. ...+.+.|.|||+.-
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccc
Confidence 589999999999999999998887 99999999998753222 234899999999974
No 65
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.05 E-value=3.6e-10 Score=94.74 Aligned_cols=63 Identities=27% Similarity=0.391 Sum_probs=43.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccC-CCCCceeeeEEEEe---CCcEEEEecCCCCCCCCCcH
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQ 160 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~ 160 (256)
++|+++|.+|+||||++|+|+|+....++ ...++|+.++.... +..+.++||||+..+...+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 47999999999999999999999887766 34567777764433 55799999999987765443
No 66
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.05 E-value=3e-10 Score=90.92 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=43.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CC-cEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~-~~~l~DtPGi~~ 154 (256)
.|+++|.||||||||+|+|.+... .++..|++|+..... .. +. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 489999999999999999998654 678888888765432 22 33 789999999864
No 67
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.04 E-value=5.1e-10 Score=87.91 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=48.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-CCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~ 155 (256)
++|+++|.||+|||||+|+|.+.....+++.||+|.+..... . +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 579999999999999999999988777889999998865433 2 336889999998654
No 68
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=1e-09 Score=103.88 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=48.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-CCceeeeEEEE--eCCcEEEEecCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVR--FGKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~--~~~~~~l~DtPGi~~~~~ 157 (256)
-.++|+++|.|||||||++|+|.|++.+.++.. ++||+...... .+..+.+|||||+.....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 357899999999999999999999988877775 66666433322 245689999999998643
No 69
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=5.7e-10 Score=104.30 Aligned_cols=58 Identities=40% Similarity=0.564 Sum_probs=49.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
..+|++||.||||||||+|+|.+...+.+++.||+|++...... +..+.++||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 46899999999999999999999887788999999998765432 45688999999863
No 70
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.02 E-value=7.5e-10 Score=96.79 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=47.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe--CCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtPGi~~~ 155 (256)
-|++||+||+|||||||+++..+. +++++|+||.... .++. ...+.+-|-||++.-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence 489999999999999999997765 8999999999864 3443 456999999999974
No 71
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=5.4e-10 Score=101.89 Aligned_cols=57 Identities=30% Similarity=0.362 Sum_probs=45.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-------------------------CCcEEEEecC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-------------------------GKDLEFLDSP 150 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-------------------------~~~~~l~DtP 150 (256)
++|++||.||||||||+|+|++.+. .++++|++|.+...- .. ...++++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5799999999999999999998764 778999999876431 11 1236899999
Q ss_pred CCCCC
Q 025200 151 GIIPM 155 (256)
Q Consensus 151 Gi~~~ 155 (256)
|+...
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99864
No 72
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.02 E-value=6.5e-10 Score=88.86 Aligned_cols=55 Identities=40% Similarity=0.613 Sum_probs=44.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|.||||||||+|+|.+... .++..|++|+....... +..+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999998764 46677888887764333 24789999999854
No 73
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.01 E-value=4.7e-10 Score=100.07 Aligned_cols=57 Identities=35% Similarity=0.500 Sum_probs=46.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeC--CcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~--~~~~l~DtPGi~~~ 155 (256)
..|++||+||||||||+|+|++.+. .++++|+||+..+. +..+ ..+.++||||++..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 3689999999999999999998654 68999999988653 3333 46899999999754
No 74
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.01 E-value=5.6e-10 Score=103.23 Aligned_cols=57 Identities=44% Similarity=0.638 Sum_probs=49.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|.||||||||+|+|.+...+.++..||+|++...... +..+.++||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 3699999999999999999999888788999999998754332 45689999999986
No 75
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.00 E-value=2.9e-09 Score=88.32 Aligned_cols=59 Identities=27% Similarity=0.294 Sum_probs=44.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CC-cEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~-~~~l~DtPGi~~~ 155 (256)
..++|+++|.||||||||+|+|.+... .+.+.+++|.+... +.. +. .+.++||||+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 357999999999999999999998653 45566676665543 222 22 6899999999653
No 76
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.00 E-value=7.5e-10 Score=88.21 Aligned_cols=59 Identities=39% Similarity=0.558 Sum_probs=48.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~ 155 (256)
+++|+++|.||+|||||+|+|.+.....++..|++|+..... .. +..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 578999999999999999999988777778889998876422 22 456889999999754
No 77
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.00 E-value=1.1e-09 Score=86.29 Aligned_cols=60 Identities=35% Similarity=0.571 Sum_probs=48.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
..+|+++|.||+|||||+|++.+...+..++.+++|+....... ...+.++||||+..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 46799999999999999999999887777888888876543222 2458899999997643
No 78
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.99 E-value=8.9e-10 Score=108.03 Aligned_cols=58 Identities=31% Similarity=0.519 Sum_probs=48.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 155 (256)
.++|+++|.||||||||+|+|+|.+. .+++.||+|.+...... +..+.++||||+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 46899999999999999999998765 79999999998654333 346899999999753
No 79
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.97 E-value=7e-10 Score=87.20 Aligned_cols=55 Identities=45% Similarity=0.663 Sum_probs=45.1
Q ss_pred EEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCC
Q 025200 101 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 155 (256)
Q Consensus 101 ~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 155 (256)
+++|.+|||||||+|+|.+.....++..|++|++...... +..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4799999999999999999877778889999987654332 346889999999764
No 80
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.95 E-value=1.6e-09 Score=92.24 Aligned_cols=56 Identities=34% Similarity=0.580 Sum_probs=45.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 155 (256)
+|+++|.||+|||||+|+|++.. ..+++.|++|.+... +.. +..++++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 68999999999999999999875 357889999977643 222 456899999998754
No 81
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.95 E-value=1.6e-09 Score=85.47 Aligned_cols=53 Identities=42% Similarity=0.668 Sum_probs=42.8
Q ss_pred EECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCCC
Q 025200 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 102 ~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 155 (256)
++|.+|||||||+|++.+.. ..++..||+|.+.+. +.. +.++.++||||+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCcccc
Confidence 58999999999999999876 577888999998743 333 346899999999654
No 82
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.95 E-value=1.3e-09 Score=106.66 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=49.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|.||||||||+|+|++.+.+.+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999999888889999999998765433 34689999999874
No 83
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.93 E-value=2e-09 Score=85.20 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=48.1
Q ss_pred EEEECCCCCcHHHHHHHHhc-CCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~-~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
|+++|.+|+|||||+|+|.+ ......++.+|+|.....+.....+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 79999999999999999994 445567888999998888877778999999998654
No 84
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.92 E-value=1.1e-09 Score=88.00 Aligned_cols=52 Identities=38% Similarity=0.569 Sum_probs=42.3
Q ss_pred EECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe--CCcEEEEecCCCCC
Q 025200 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 154 (256)
Q Consensus 102 ~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtPGi~~ 154 (256)
++|.+|||||||+|+|.+... .+++.|++|++... +.. +..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999998776 67888999987643 222 45689999999853
No 85
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.91 E-value=1.8e-09 Score=95.81 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=43.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-------------------------CCcEEEEecCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI 152 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-------------------------~~~~~l~DtPGi 152 (256)
|+++|.||||||||+|+|++... .++++|++|.+... ... .-.++++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999998764 88999999977542 111 124789999999
Q ss_pred CCC
Q 025200 153 IPM 155 (256)
Q Consensus 153 ~~~ 155 (256)
+..
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 754
No 86
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.8e-09 Score=94.64 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=46.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-------------------CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-------------------~~~~~l~DtPGi~~~ 155 (256)
.+++|+||.||||||||+|+|+... +.++++|++|-+... +.+ .-.+.++|.+|+++-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999877 789999999987532 111 113789999999864
No 87
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.85 E-value=9e-09 Score=87.06 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=47.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC-Cccc-CCCCCceeeeEEEE--e----CCcEEEEecCCCCCCCCCc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR-MCPA-APRPGVTRVLKWVR--F----GKDLEFLDSPGIIPMRISD 159 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~-~~~~-~~~~g~T~~~~~~~--~----~~~~~l~DtPGi~~~~~~~ 159 (256)
-..|+++|.|++|||+|+|.|.+.. ...+ ...+.+|+.+.... . +..+.++||||+..+...+
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc
Confidence 3468999999999999999999972 3344 45578888865322 1 2569999999999775543
No 88
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.85 E-value=5.7e-09 Score=82.66 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=39.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCccc--CCCCCceeeeEE--EEe--CCcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKW--VRF--GKDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~--~~~~g~T~~~~~--~~~--~~~~~l~DtPGi~ 153 (256)
.|+++|.||||||||+|+|.+...... ...+++|.+... +.. +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 589999999999999999997543222 235677766543 222 3468899999973
No 89
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.85 E-value=8.4e-09 Score=80.23 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=44.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeC---CcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~---~~~~l~DtPGi~ 153 (256)
++|+++|.+|+|||||+|++.+.. ...+..+++|.+... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 589999999999999999999887 677888888888754 3333 347889999953
No 90
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.84 E-value=4e-09 Score=89.95 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=48.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC----CceeeeEEEEeCCcEEEEecCCCCCCCCCc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP----GVTRVLKWVRFGKDLEFLDSPGIIPMRISD 159 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~----g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~ 159 (256)
.+++|.++|.+|+|||||||+|.+.....++..+ -+|+.++.+.. +.+.|+||||+-...-.|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhh
Confidence 5889999999999999999999976666665444 34444454443 789999999998866555
No 91
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.81 E-value=6.5e-09 Score=90.78 Aligned_cols=60 Identities=35% Similarity=0.398 Sum_probs=48.7
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--------------------CCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~l~DtPGi~~ 154 (256)
...+++++||.|||||||++|+|+..+.. .+++|.+|-+...-++ .-.+.+.|..|++.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 34679999999999999999999977664 9999999998653332 12378999999986
Q ss_pred C
Q 025200 155 M 155 (256)
Q Consensus 155 ~ 155 (256)
.
T Consensus 97 G 97 (391)
T KOG1491|consen 97 G 97 (391)
T ss_pred C
Confidence 4
No 92
>COG1159 Era GTPase [General function prediction only]
Probab=98.80 E-value=1.9e-08 Score=86.80 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=74.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCC--CCEEEEEecCCCCChHH-HHHHHHHHHHcC--CeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGN--RKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~--k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~--~~vi~~sa~~~~g~~~L~~ 75 (256)
||+|++|+||..+++..+..+.+.++. .|+++++||+|.++++. +.+..+++.... ..++++||++|.+++.|.+
T Consensus 86 vDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~ 165 (298)
T COG1159 86 VDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLE 165 (298)
T ss_pred CcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHH
Confidence 799999999999999988888777764 59999999999998876 566677666543 5789999999999999999
Q ss_pred HHHHHHhhhhhhhhc
Q 025200 76 LAKALASDVNVKRRS 90 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~ 90 (256)
.+.+.+++...++..
T Consensus 166 ~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 166 IIKEYLPEGPWYYPE 180 (298)
T ss_pred HHHHhCCCCCCcCCh
Confidence 999988876555443
No 93
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.79 E-value=3.6e-08 Score=77.08 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=65.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCC-ChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~-~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
||+|++|.||..+.+...|.+...+ ++|+|=|+||+|+. +.++++.-.++++..| .+++.+|+.+|+|+++|.+.++
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 7999999999999999999998776 59999999999998 4556666666777777 4578899999999999988765
No 94
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.74 E-value=1.8e-08 Score=90.48 Aligned_cols=58 Identities=34% Similarity=0.367 Sum_probs=47.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeC------------------CcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPGi~~~ 155 (256)
+++++||+||||||||+|+|++.+...++++|++|..... +... ..+.++|.||++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6789999999999999999998876588999999987642 3322 24789999999863
No 95
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.74 E-value=2.9e-08 Score=82.17 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=41.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCC----CCCceeeeEEEEe--CCcEEEEecCCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP----RPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~----~~g~T~~~~~~~~--~~~~~l~DtPGi~~~~~ 157 (256)
+++|+++|.+|||||||+|+|++......+. ...+|+....+.. ..++.++||||+.....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccC
Confidence 3689999999999999999999854322111 1224544443332 24689999999976433
No 96
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.73 E-value=9.2e-08 Score=76.41 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcC--CeEEEecCcCCcchhHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~--~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+|++++|+|+..+.+.....+.....++|+++++||+|+.+. ....+.+++++.+ .+++++|+++|.|++++.+.+.
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 699999999998876666555554446899999999999643 3344555555555 3789999999999999998877
Q ss_pred HHHhh
Q 025200 79 ALASD 83 (256)
Q Consensus 79 ~l~~~ 83 (256)
+....
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 66543
No 97
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.73 E-value=2.3e-08 Score=79.63 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=40.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe------CCcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~------~~~~~l~DtPGi~ 153 (256)
.|+++|.+|+|||||+|+|.+... .....+++|.+...... +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 489999999999999999997654 33455677776542222 3468999999974
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.72 E-value=2.9e-08 Score=78.61 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=39.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeCC---cEEEEecCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGI 152 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~~---~~~l~DtPGi 152 (256)
+|+++|.||||||||+|++.+.+.. .+..|++|.+... +..+. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 6899999999999999999987653 3556666665432 32322 3789999995
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.70 E-value=5.3e-08 Score=77.15 Aligned_cols=56 Identities=29% Similarity=0.370 Sum_probs=41.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+..... ..+.+|.+.....+..+. .+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999999865432 455566665555444433 47899999964
No 100
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.70 E-value=3.5e-08 Score=77.09 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=40.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeC---CcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+.+.... .+..|.+.....+... ..+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 4799999999999999999998765443 3344444444444432 347899999974
No 101
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.69 E-value=6.3e-08 Score=76.81 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=39.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 152 (256)
++|+++|.+|||||||+|++.+.+... ..+..|.+.....+..+. .+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 689999999999999999999877544 444555444333333332 4679999995
No 102
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.69 E-value=1.1e-07 Score=82.58 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHH-cC-CeEEEecCcCCcchhHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG-TKVIFSNGQLGMGTMKLSRL 76 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~-~~-~~vi~~sa~~~~g~~~L~~~ 76 (256)
+|++++|+|++.+.+.. ..+...+. ++|.++|+||+|+.+++....+...+.. .+ .+++++||++|.|+++|.+.
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~ 158 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAF 158 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence 69999999999875543 34444443 6899999999999876654444433332 22 36899999999999999999
Q ss_pred HHHHHhhhh
Q 025200 77 AKALASDVN 85 (256)
Q Consensus 77 i~~l~~~~~ 85 (256)
+.+.+++..
T Consensus 159 l~~~l~~~~ 167 (270)
T TIGR00436 159 IEVHLPEGP 167 (270)
T ss_pred HHHhCCCCC
Confidence 888776543
No 103
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.68 E-value=1.5e-08 Score=84.64 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=40.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCccc------------------------------CCCCCceeeeEEEEe---CCcEE
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GKDLE 145 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~---~~~~~ 145 (256)
+|+++|+||+|||||+|+|.......+ ...+|+|++...... +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986443222 112788888654333 44689
Q ss_pred EEecCCCC
Q 025200 146 FLDSPGII 153 (256)
Q Consensus 146 l~DtPGi~ 153 (256)
++||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999973
No 104
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=81.84 Aligned_cols=68 Identities=28% Similarity=0.238 Sum_probs=45.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee----EEEEeCCcEEEEecCCCCCCCCCcHHHHHH
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL----KWVRFGKDLEFLDSPGIIPMRISDQAAAIK 165 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~----~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~ 165 (256)
...|++|||+|+|||||||+|++. .....+..+-|.+. -...-+..+.+.||-||+...+.....++.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~A-al~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKA-ALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhh-hcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 456999999999999999999943 33333444444443 223335568999999999865544444443
No 105
>PLN03118 Rab family protein; Provisional
Probab=98.67 E-value=6.9e-08 Score=80.62 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=43.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+.......+..|++.....+.++. .+.++||||...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 36899999999999999999999876544455555544444444443 478999999743
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.66 E-value=1.6e-07 Score=72.98 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=55.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHH-HHHHHHHHHHcCC-eEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++++|+|+.++.+..+..+.+.. .+|.++|+||+||.+... .+.-.++.++.+. +++.+||++|.|++++.+.+
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 6999999999999888776665544 469999999999975322 2222333444453 67889999999998877654
No 107
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.66 E-value=9.3e-08 Score=76.70 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=39.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccC-CCCCceeeeEEEEeCC---cEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 152 (256)
.++|+++|.||||||||+|++.+....... ...|.+.....+.... .+.++||||-
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 368999999999999999999986543332 2334444434444433 5789999995
No 108
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.66 E-value=1.8e-07 Score=73.34 Aligned_cols=76 Identities=28% Similarity=0.314 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++++|+|++.+.+..+..+.+++. +.|+++|+||+|+.+.... ...+...+. +++.+|++++.|++++.+.+
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 68999999999988887777766665 6899999999999876543 222333443 67899999999999887765
Q ss_pred HH
Q 025200 78 KA 79 (256)
Q Consensus 78 ~~ 79 (256)
.+
T Consensus 154 ~~ 155 (157)
T cd01894 154 LE 155 (157)
T ss_pred Hh
Confidence 43
No 109
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.66 E-value=7.3e-08 Score=79.05 Aligned_cols=82 Identities=23% Similarity=0.159 Sum_probs=57.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChH---HHHHHHHHH-HHcC------CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA---DRNAWATYF-AKQG------TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~---~~~~w~~~~-~~~~------~~vi~~sa~~~~ 68 (256)
+|++|+|+||+.++.....+....+. +.|.++|+||+|+...+ ..+++.+.+ +..+ .+++++||.+|.
T Consensus 94 ~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~ 173 (188)
T PF00009_consen 94 ADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGD 173 (188)
T ss_dssp SSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTB
T ss_pred cccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCC
Confidence 69999999999886654444444433 68999999999998332 233444333 2222 368999999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|++.|.+.+.++.+
T Consensus 174 gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 174 GIDELLEALVELLP 187 (188)
T ss_dssp THHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHhCc
Confidence 99999998877654
No 110
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.65 E-value=3.1e-08 Score=81.42 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=40.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC------CcccCCCCCceeeeEEE--Ee---------------CCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~------~~~~~~~~g~T~~~~~~--~~---------------~~~~~l~DtPGi~ 153 (256)
++|+++|.+|+|||||+|+|.+.. ....+..+|+|.+.... .+ +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 479999999999999999999741 22234456888775421 11 3368999999973
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.64 E-value=7.8e-08 Score=77.53 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=39.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.......+..|.... .+.. ...+.++||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 457899999999999999999998755444444443222 2222 3357899999974
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.63 E-value=2.7e-07 Score=73.32 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=60.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCCh--HHHHHHHHHHHHc-----CCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~~~~~-----~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+..|.+..+..+...+ .++|+++|+||+|+.+. .....+.+.+++. ..+++.+|++.+.|++
T Consensus 85 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (174)
T cd01895 85 ADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVD 164 (174)
T ss_pred cCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHH
Confidence 5899999999999887665555444 36899999999999876 4555666655442 2568899999999998
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++.+.+.+
T Consensus 165 ~~~~~l~~ 172 (174)
T cd01895 165 KLFDAIDE 172 (174)
T ss_pred HHHHHHHH
Confidence 88776654
No 113
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.62 E-value=1.3e-07 Score=75.29 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=38.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+.+.. ....|.++.+. ..+..+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 68999999999999999999976542 23334443332 2333333 47899999974
No 114
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.61 E-value=9.3e-08 Score=91.62 Aligned_cols=51 Identities=45% Similarity=0.684 Sum_probs=42.2
Q ss_pred CCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-CCcEEEEecCCCCCC
Q 025200 104 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 104 G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~ 155 (256)
|.||||||||+|+|++.+. .+++.||+|.+..... . +..+.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 8999999999999998764 7999999999875432 2 446899999999754
No 115
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.61 E-value=1.2e-07 Score=85.34 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=39.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC-----CcccCCCCCceeeeEEEEeC--CcEEEEecCCCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPMRIS 158 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~-----~~~~~~~~g~T~~~~~~~~~--~~~~l~DtPGi~~~~~~ 158 (256)
+++|+|+|-+|+|||||||+|.|-. .+.+|.. .||.....+.-. .++.++|.||+-.+.+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~ 102 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP 102 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC
Confidence 6899999999999999999998732 3333332 355555544433 47999999999776654
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.61 E-value=7e-08 Score=75.01 Aligned_cols=56 Identities=32% Similarity=0.413 Sum_probs=45.7
Q ss_pred EECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCCCCCC
Q 025200 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 102 ~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~~~~~ 157 (256)
++|.+|+|||||+|+|.+......+..+++|........ ...+.++||||+.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 589999999999999999877778888888887654443 44799999999987543
No 117
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.61 E-value=1.5e-07 Score=74.69 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=37.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeC---CcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~---~~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+..... ...|.++.+ ...+... -.+.++||||.-
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 479999999999999999999876422 223322222 2223332 247899999973
No 118
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.60 E-value=1.8e-07 Score=73.94 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH---hhCCCCEEEEEecCCCCChHH----HHHHHHHHHH---cCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMISMAD----RNAWATYFAK---QGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~---~l~~k~~ilVlNK~DL~~~~~----~~~w~~~~~~---~~~~vi~~sa~~~~g~ 70 (256)
+|++++|+|++.+.......... ..+.+|+++|+||+|+.+... .+++.+.++. .+.+++++|++++.|+
T Consensus 75 ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 75 IDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred CCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 69999999998744332222211 223359999999999987532 2445555554 3467889999999999
Q ss_pred hHHHHHHHH
Q 025200 71 MKLSRLAKA 79 (256)
Q Consensus 71 ~~L~~~i~~ 79 (256)
+++.+.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 988776643
No 119
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.59 E-value=1.3e-07 Score=82.44 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=40.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCC--------CCCcee-eeEEEEe--C---CcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVTR-VLKWVRF--G---KDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~--------~~g~T~-~~~~~~~--~---~~~~l~DtPGi~~~ 155 (256)
.++|+++|.+|+|||||+|+|.+......+. .+.++. ......+ . -.+.++||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 5789999999999999999999887655432 222221 1111122 2 24889999999754
No 120
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.59 E-value=3.1e-07 Score=72.23 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=63.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCC-ChHHHHHHHHHHHHcC--CeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~-~~~~~~~w~~~~~~~~--~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+..|.+.....+.+.+. +.|.++|+||+|+. +.....++.+++.... .+++.+|++.+.|++++.+
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 58999999999996666666655554 48999999999998 5666777888777654 5778899999999998888
Q ss_pred HHHH
Q 025200 76 LAKA 79 (256)
Q Consensus 76 ~i~~ 79 (256)
.+.+
T Consensus 163 ~l~~ 166 (168)
T cd04163 163 EIVK 166 (168)
T ss_pred HHHh
Confidence 7754
No 121
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.59 E-value=1.3e-07 Score=75.88 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=40.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 3688999999999999999999987554444555544322111 24568899999964
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.59 E-value=9.7e-08 Score=75.57 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=38.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC--CcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++.+.......+..|.+. ..+... ..+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 47999999999999999999877654444444332 223332 358899999974
No 123
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.58 E-value=2.6e-07 Score=78.18 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=58.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHH----HHHHHHHc-------------------
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA----WATYFAKQ------------------- 55 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~----w~~~~~~~------------------- 55 (256)
+|++++|+||+.++......+..++. +.|.++|+||+|++++....+ +.+.++..
T Consensus 110 ~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~ 189 (224)
T cd04165 110 PDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAA 189 (224)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehh
Confidence 58999999999887765555555543 689999999999987754433 33333311
Q ss_pred -------CCeEEEecCcCCcchhHHHHHHHHH
Q 025200 56 -------GTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 56 -------~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
..+++.+|+.+|.|++.|.+.+..+
T Consensus 190 ~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 190 SNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred hcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1367789999999999998887654
No 124
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.57 E-value=2e-07 Score=73.84 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=36.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCcee--eeEEEEeCC---cEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPGi 152 (256)
++|+++|.||+|||||+|++.+.+. .....+.++. ....+..+. .+.++||||-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 4799999999999999999997654 2222233332 223334433 4779999995
No 125
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.57 E-value=2.2e-07 Score=74.41 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=38.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.||||||||+|++.+.+... ..+..|++.....+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 4789999999999999999999765322 122233333333344433 47899999954
No 126
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.57 E-value=2e-07 Score=73.88 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=36.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|+|.+.+... ..+..|.......+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 479999999999999999999765322 122223222222333332 47899999963
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.55 E-value=1.8e-07 Score=76.46 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=39.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+..+|+++|.+|||||||+|++.+.....+.+..+.|. ..+.. +..+.++||||...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCHH
Confidence 35789999999999999999999875543333333332 22222 34578999999753
No 128
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.55 E-value=8.5e-08 Score=77.67 Aligned_cols=56 Identities=29% Similarity=0.401 Sum_probs=39.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccC---------------CCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|+|||||+|+|.+....... ..+|+|........ ...+.++||||...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence 3799999999999999999986543321 22455655433222 34689999999753
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.55 E-value=1.9e-07 Score=74.55 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCCC-CCCC-HH----HHHh---hCCCCEEEEEecCCCCChHHHHHHHHHHHHc--CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPL-STTH-PL----MDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQ--GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-~~~~-~~----l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~--~~~vi~~sa~~~~g 69 (256)
+|++++|+|+..+. +..+ .. +.+. +.++|+++|+||+|+.++....+|.+.+... +..++.+|++.+.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 68999999999872 2211 11 2221 1258999999999998877666666654443 56788999999999
Q ss_pred hhHHHHHHHH
Q 025200 70 TMKLSRLAKA 79 (256)
Q Consensus 70 ~~~L~~~i~~ 79 (256)
++++.+.+.+
T Consensus 159 i~~l~~~i~~ 168 (170)
T cd01898 159 LDELLRKLAE 168 (170)
T ss_pred HHHHHHHHHh
Confidence 9988776654
No 130
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.55 E-value=2.9e-07 Score=72.96 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=38.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.||||||||+|++.+... ++..++++.+. ....+.. .+.++||||..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 36899999999999999999997543 34444444332 2222332 36789999965
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.55 E-value=1.5e-07 Score=74.39 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=38.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|++.+.......+..|.+... +.. ...+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCChh
Confidence 4899999999999999999988744444444444322 222 34689999999754
No 132
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.55 E-value=1.9e-07 Score=75.46 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=39.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
..+|+++|.+|||||||+|++.+.......+..|.+.. .+.. ...+.++||||..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCH
Confidence 46899999999999999999987655444444444432 2222 3468999999974
No 133
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.55 E-value=1.3e-07 Score=85.47 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=48.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC----CCc-----------ccCCCCC---ceeeeEE-------EEeC----CcEEE
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKW-------VRFG----KDLEF 146 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~----~~~-----------~~~~~~g---~T~~~~~-------~~~~----~~~~l 146 (256)
..+.|+++|.-|+|||||||++++. ... -+++.+| +|++..+ +... ..+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999987 554 5788899 8888755 2223 56899
Q ss_pred EecCCCCCC
Q 025200 147 LDSPGIIPM 155 (256)
Q Consensus 147 ~DtPGi~~~ 155 (256)
+||+|+...
T Consensus 96 IDcvG~~v~ 104 (492)
T TIGR02836 96 VDCVGYTVK 104 (492)
T ss_pred EECCCcccC
Confidence 999999753
No 134
>PRK00089 era GTPase Era; Reviewed
Probab=98.55 E-value=5.5e-07 Score=78.98 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCC-ChHHHHHHHHHHHHc--CCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~-~~~~~~~w~~~~~~~--~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+..+++.....+.+.+. ++|.++|+||+|+. +++......+.+.+. ..+++.+||+++.|+++|.+
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLD 164 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHH
Confidence 69999999999877766566666554 57999999999999 556666666666542 25688899999999999998
Q ss_pred HHHHHHhh
Q 025200 76 LAKALASD 83 (256)
Q Consensus 76 ~i~~l~~~ 83 (256)
.+.+.+++
T Consensus 165 ~L~~~l~~ 172 (292)
T PRK00089 165 VIAKYLPE 172 (292)
T ss_pred HHHHhCCC
Confidence 88877654
No 135
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.54 E-value=1.1e-07 Score=87.76 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=44.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc------------------------------CCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|++|+|||||+|+|+....... ...+|+|++.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 468999999999999999999985432211 126899999876555 34
Q ss_pred cEEEEecCCCC
Q 025200 143 DLEFLDSPGII 153 (256)
Q Consensus 143 ~~~l~DtPGi~ 153 (256)
.+.++||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 68999999963
No 136
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.54 E-value=9.2e-08 Score=76.42 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=33.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
+|+++|.||||||||+|+|.+.... . ..|..+.+ ... .++||||....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v~~---~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAVEF---NDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEEEE---CCC-CcccCCccccC
Confidence 5899999999999999999986421 1 23333222 111 27999998654
No 137
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.53 E-value=1.7e-07 Score=74.12 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=37.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC--cccCCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~--~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|++.+... ....+..|.+... ...-...+.++||||...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh
Confidence 479999999999999999998642 2334444544321 111233578999999753
No 138
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.52 E-value=2.8e-07 Score=75.50 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=37.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+.+... ..+..|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999999765421 222223222223344443 25689999974
No 139
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.52 E-value=3.6e-07 Score=72.98 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=36.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEEeC---CcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~---~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.+... ...| |++.....+... -.+.++||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 579999999999999999999866422 1222 222222223322 247899999964
No 140
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.52 E-value=3.5e-07 Score=72.06 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=35.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+... ....++++.+. ..+.++. .+.++||||--
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999997653 22233333221 1223332 26789999964
No 141
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.52 E-value=1.3e-07 Score=75.32 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc---ccCCCCCceeee--EEEEe-CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~---~~~~~~g~T~~~--~~~~~-~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|+|.+.... .....+..|... ..+.. +..+.++||||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh
Confidence 3799999999999999999864321 111122333332 22333 34688999999753
No 142
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.52 E-value=3.6e-07 Score=72.85 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=37.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi 152 (256)
.++|+++|.+|||||||++++.+...... ....|+......+..+. .+.++||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 46899999999999999999986543222 12223222233344433 5789999995
No 143
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-07 Score=79.21 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=46.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE---EEeCCcEEEEecCCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~---~~~~~~~~l~DtPGi~~~ 155 (256)
...-||+++|+|.||||||+..+++.+. ..+++.+||..+.. .+-+-+++++|.|||+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 3567999999999999999999997544 55666778876632 233668999999999864
No 144
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.50 E-value=4e-07 Score=72.72 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=35.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||+|++.+...... ....|.+.....+..+. .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 4799999999999999999997653211 12223222222233333 25689999963
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.50 E-value=3.5e-07 Score=71.61 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=59.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|++++|+|++.+.+..+..+.....++|+++|+||+|+.+.... .....+.+++.+|++++.|++++.+.+.+.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999888777666555567999999999999876543 223335678999999999999988876653
No 146
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.50 E-value=8.6e-07 Score=73.70 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCC-CCCCHHHHHhh---CCCCEEEEEecCCCCChHHHH----HHHHHHHH---cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPL-STTHPLMDQWL---GNRKRILVLNREDMISMADRN----AWATYFAK---QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-~~~~~~l~~~l---~~k~~ilVlNK~DL~~~~~~~----~w~~~~~~---~~~~vi~~sa~~~~g 69 (256)
+|++++|+|++.|. ..........+ +.+|+++|+||+|+.+..... +..+.+.. .+.+++++||++|.|
T Consensus 107 ~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g 186 (203)
T cd01888 107 MDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN 186 (203)
T ss_pred CCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence 59999999999863 22222222222 235789999999998754432 23333332 245688999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
+++|.+.+.+..
T Consensus 187 i~~L~~~l~~~l 198 (203)
T cd01888 187 IDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHhC
Confidence 999988876543
No 147
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.49 E-value=5.8e-07 Score=83.97 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCCCCCCCH---------HHHHh------------hCCCCEEEEEecCCCCChHHHHHH-HHHHHHcCCe
Q 025200 1 MDVVIEVRDARIPLSTTHP---------LMDQW------------LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTK 58 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~---------~l~~~------------l~~k~~ilVlNK~DL~~~~~~~~w-~~~~~~~~~~ 58 (256)
+|++|+|+|+..+...+++ ++..+ +.++|.|+|+||+|+.+.....++ .+.+.+.+.+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 6899999999653222221 23222 236899999999999765444333 3355556778
Q ss_pred EEEecCcCCcchhHHHHHHHHHHhh
Q 025200 59 VIFSNGQLGMGTMKLSRLAKALASD 83 (256)
Q Consensus 59 vi~~sa~~~~g~~~L~~~i~~l~~~ 83 (256)
++.+||+++.|+++|...+.++...
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998888777654
No 148
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.49 E-value=3.5e-07 Score=74.70 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=38.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
+..+|+++|.+|||||||+|++.+.......+..+.+. ..+.. +..+.++||||-.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 45789999999999999999999865433333223222 22223 3457899999953
No 149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.49 E-value=3.5e-07 Score=73.61 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=38.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||++++....... ..|.++.+...+.. ...+.++||||..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--ccCCcccceEEEEECCEEEEEEECCCCH
Confidence 35789999999999999999998654322 23333222222222 3358899999984
No 150
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.49 E-value=3.9e-07 Score=72.33 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
+|+++|.||||||||+|++.+.... ...++++.+. .....+. .+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 7999999999999999999976532 2222333322 1222322 467899999754
No 151
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.49 E-value=3.5e-07 Score=72.90 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=37.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.+.. ....|..+.+. ..+..+. .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999976532 23334333332 2233332 47899999953
No 152
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.48 E-value=3e-07 Score=79.89 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=38.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----ccc------------CCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~-----~~~------------~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|++|+|||||+|+|..... ..+ ....|+|.+.....+ +..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 379999999999999999963211 111 124577777543332 44688999999764
No 153
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.47 E-value=3.9e-07 Score=75.58 Aligned_cols=56 Identities=30% Similarity=0.507 Sum_probs=38.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.||||||||+|++.+.... ....|.++.+. ..+..+. .+.++||||...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 37999999999999999999976532 22345444332 2233333 367999999853
No 154
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.47 E-value=4.5e-07 Score=81.01 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCCCCC-----C---CHHHHHh---hCCCCEEEEEecCCCCChHHHHHHHHHHHH-cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLST-----T---HPLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-----~---~~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+-.+ . ..++..+ +.++|.++|+||+|+.+.+..+++.+++.+ .+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 5899999999865211 1 0112121 236899999999999877666666666653 35678999999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 316 GI~eL~~~I~~~ 327 (329)
T TIGR02729 316 GLDELLYALAEL 327 (329)
T ss_pred CHHHHHHHHHHH
Confidence 999988876654
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.47 E-value=2.5e-07 Score=76.17 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=38.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCccc---------------CCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~---------------~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|+|.+...... ....|+|.......+ ...+.++||||...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 689999999999999999996321111 112566655443332 34588999999853
No 156
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.47 E-value=2.1e-07 Score=72.38 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=31.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 152 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 152 (256)
+|+++|.||||||||+|++.+.... .+ .|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cceeEEE---cC--eeecCchh
Confidence 6899999999999999999986531 11 1322222 22 68999997
No 157
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.47 E-value=4.7e-07 Score=72.52 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=36.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.||||||||+|++.+.... ...+.++.. ...+..+ ..+.++||||...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 57999999999999999999866532 222222221 1223333 2468999999754
No 158
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.47 E-value=1.6e-07 Score=75.73 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcc--------------cCCCCCceeeeEEEEe--------CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~--------------~~~~~g~T~~~~~~~~--------~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|+|.+...+. +....|+|...+.... ...+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 58999999999999999998743211 1112356655432221 22367999999864
No 159
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.46 E-value=2.8e-07 Score=73.72 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=35.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC----ceeeeEEEEeCCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG----VTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.+.. +..|. +|...........+.++||||..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 37899999999999999999976542 22333 22222111112347899999975
No 160
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.46 E-value=5.8e-07 Score=71.69 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=36.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||+|+|.+.+. .....|...... ...... ..+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 4799999999999999999998664 222222221111 111221 2478999999864
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.46 E-value=5.4e-07 Score=70.85 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHHHHHHHHH-HcCCeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~-~~~~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++++|+|++.+.. ...+...+ .++|+++|+||+|+.+......+.+.+. ..+.+++.+|+..+.|++++.+.+
T Consensus 75 ~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 75 PDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred CcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 589999999987633 22232222 3689999999999987654444443333 346678999999999999887776
Q ss_pred HHH
Q 025200 78 KAL 80 (256)
Q Consensus 78 ~~l 80 (256)
..+
T Consensus 153 ~~~ 155 (158)
T cd01879 153 AEL 155 (158)
T ss_pred HHH
Confidence 554
No 162
>PRK15494 era GTPase Era; Provisional
Probab=98.46 E-value=7.3e-07 Score=80.02 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=63.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC--CeEEEecCcCCcchhHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRL 76 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~--~~vi~~sa~~~~g~~~L~~~ 76 (256)
+|++++|+|++.++......+.+.+. +.|.++|+||+|+.+. ...+..+++...+ ..++++||++|.|++++.+.
T Consensus 132 aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~ 210 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEY 210 (339)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHH
Confidence 69999999998876655444544443 5688999999999754 3344445554443 46889999999999999998
Q ss_pred HHHHHhhhhhhh
Q 025200 77 AKALASDVNVKR 88 (256)
Q Consensus 77 i~~l~~~~~~~~ 88 (256)
+.+.+++....+
T Consensus 211 L~~~l~~~~~~~ 222 (339)
T PRK15494 211 ITSKAKISPWLY 222 (339)
T ss_pred HHHhCCCCCCCC
Confidence 888776644433
No 163
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.46 E-value=3.1e-07 Score=74.26 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=35.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~---~~~~l~DtPGi~~ 154 (256)
.+|+++|.||||||||+|++.+... ....++++.. ...+... -.+.++||||...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 61 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE 61 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh
Confidence 4799999999999999999997543 2222222221 1112222 2468999999753
No 164
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.46 E-value=4.9e-07 Score=71.57 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=35.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeC-----CcEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-----KDLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~-----~~~~l~DtPGi 152 (256)
++|+++|.+|||||||+|++.+.... ....|..+.+. ..+.+. -.+.++||||-
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 37999999999999999999975432 12233333332 222222 24789999995
No 165
>CHL00071 tufA elongation factor Tu
Probab=98.46 E-value=3.5e-07 Score=84.12 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=42.8
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCc---------------ccCCCCCceeeeEEEEe---CCcEEEEecCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 152 (256)
+..++|+++|.+|+|||||+|+|++.... .....+|+|.+...... +..+.++||||.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 35689999999999999999999974221 11233799988654433 335889999995
No 166
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.46 E-value=5.6e-07 Score=73.40 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=37.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|++.........+..|.+.....+.. +..+.++||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 57899999999999999999987654322122232222222222 1247899999963
No 167
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.45 E-value=5.5e-07 Score=73.91 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=36.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi 152 (256)
++|+++|.+|||||||+|++.+.........|.++.+. ..+.++. .+.++||||-
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 37899999999999999999876542212223222222 2233332 4789999995
No 168
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.44 E-value=7.1e-07 Score=71.27 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=35.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||+|++.+.... ....| +.+. ...+... ..+.++||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheE-EEEEEECCEEEEEEEEECCCCCc
Confidence 57999999999999999999976532 11112 1111 1222222 2477999999854
No 169
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.44 E-value=6.7e-07 Score=70.75 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.||||||||+|++.+... +...+.++.+. ..+..+. .+.++||||...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999997543 22333343322 2233332 356899999753
No 170
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.44 E-value=1.3e-06 Score=69.71 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCCCCCCH---HHHHhh----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP---LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~---~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+..+.+.... .+...+ .+.|+++|+||+|+.+.....+..++.+..+.+++.+||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 3789999999877542111 122222 267999999999998765544322333333466889999999999998
Q ss_pred HHHHHH
Q 025200 74 SRLAKA 79 (256)
Q Consensus 74 ~~~i~~ 79 (256)
.+.+.+
T Consensus 160 ~~~l~~ 165 (168)
T cd01897 160 KNKACE 165 (168)
T ss_pred HHHHHH
Confidence 876554
No 171
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.44 E-value=6.7e-07 Score=73.08 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=37.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 379999999999999999999765432 223334333333344433 36789999953
No 172
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.44 E-value=5.9e-07 Score=81.93 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHh-hCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~-l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
||+|++|+|++.|....++.+... ..++|+++|+||+||.++...... + ...+..++.+|++++.|++.|.+.+.+
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~--~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K--LANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h--ccCCCceEEEEecCccCHHHHHHHHHH
Confidence 799999999999988888777763 347899999999999987543322 1 112345789999999999999998887
Q ss_pred HHhh
Q 025200 80 LASD 83 (256)
Q Consensus 80 l~~~ 83 (256)
+...
T Consensus 374 ~~~~ 377 (454)
T COG0486 374 LFGK 377 (454)
T ss_pred HHhh
Confidence 6543
No 173
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.43 E-value=4.6e-07 Score=71.77 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=34.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++........ .|.+......+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT--IPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc--CCccCcCeEEEEECCEEEEEEECCCCH
Confidence 479999999999999999976554322 2311111112222 3457899999985
No 174
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.43 E-value=1.1e-06 Score=71.16 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHH----HHHHHHH--------------cCCeEE
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA----WATYFAK--------------QGTKVI 60 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~----w~~~~~~--------------~~~~vi 60 (256)
+|.+++|+|+..+.......+...+. ++|+++|+||+|+..++.... ..+.++. ...+++
T Consensus 86 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (189)
T cd00881 86 SDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIV 165 (189)
T ss_pred cCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEE
Confidence 68999999999887654444444433 789999999999987443222 2223322 246788
Q ss_pred EecCcCCcchhHHHHHHHHH
Q 025200 61 FSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 61 ~~sa~~~~g~~~L~~~i~~l 80 (256)
++|++.|.|++++.+.+...
T Consensus 166 ~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 166 PGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred EEecccCcCHHHHHHHHHhh
Confidence 89999999999888776654
No 175
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.43 E-value=4.5e-07 Score=75.08 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=41.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC------Cc---------ccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~------~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
.++|+++|++|+|||||+++|++.. .. ......|+|.+...... +..+.++||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 4689999999999999999998531 00 11125688887654444 3458999999985
No 176
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.43 E-value=4.4e-07 Score=72.19 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=37.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.||||||||+|++..... ....++++.+. ..+.++. .+.++||||...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999986432 23344444332 2233332 356899999753
No 177
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.43 E-value=3.7e-07 Score=78.00 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=51.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
.+..++++.|.+|||||||||.+...+... .+..+|-|+..+.++.+..++++|.||.-.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGR 195 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCccc
Confidence 346889999999999999999999876542 334899999999999999999999999543
No 178
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.43 E-value=7.6e-07 Score=80.20 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCCCCCCH----HHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~----~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++|+|+.+|.+..+. .+.+.+. ++|+++|+||+|+.+......+ .....+++++||++|.|+++|.
T Consensus 269 ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~----~~~~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 269 ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL----EEGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHH----HhCCCCEEEEEccCCCCHHHHH
Confidence 6999999999988654321 1222233 6899999999999875543322 2223457899999999999988
Q ss_pred HHHHH
Q 025200 75 RLAKA 79 (256)
Q Consensus 75 ~~i~~ 79 (256)
+.+.+
T Consensus 345 ~~I~~ 349 (351)
T TIGR03156 345 EAIAE 349 (351)
T ss_pred HHHHh
Confidence 87654
No 179
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.42 E-value=4.3e-07 Score=71.82 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.||||||||+|++...... ....+++.+. .....+ ..+.++||||...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 60 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhh
Confidence 37999999999999999999965432 2333333321 112222 2478899999653
No 180
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.42 E-value=9.4e-07 Score=70.71 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=37.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.||||||||+|++.+..... ...|..+.+. ..+..+. .+.++||||-.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 35899999999999999999998754322 2223222222 2233332 36789999953
No 181
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.41 E-value=4.1e-07 Score=71.53 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC---CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~---~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|++.+.. ..+..+.+|.+.. .+... ..+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 48999999999999999999765 3444444444332 22333 2477999999754
No 182
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.41 E-value=1.1e-06 Score=70.21 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=36.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCc---eeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV---TRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~---T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.... ...+.+ +.....+..+. .+.++||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999976432 222322 22222333433 47899999964
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.40 E-value=7.9e-07 Score=69.44 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=35.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC-CcEEEEecCCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGII 153 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 153 (256)
|+++|.+|||||||+|+|.+... .....|.+......+..+ ..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 78999999999999999998653 223334333332222222 347899999964
No 184
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.40 E-value=1.8e-06 Score=70.86 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH--hhCCCCEEEEEecCCCCChHH----HHHHHHHHHH-------cCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISMAD----RNAWATYFAK-------QGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~--~l~~k~~ilVlNK~DL~~~~~----~~~w~~~~~~-------~~~~vi~~sa~~~ 67 (256)
+|++++|+|++........+... ...++|.++|+||+|+...+. .+++.+++.. .+.+++.+||++|
T Consensus 92 ~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g 171 (192)
T cd01889 92 IDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPG 171 (192)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCC
Confidence 58999999999765432221111 123679999999999985443 2333333321 2457899999999
Q ss_pred cchhHHHHHHHHH
Q 025200 68 MGTMKLSRLAKAL 80 (256)
Q Consensus 68 ~g~~~L~~~i~~l 80 (256)
.|+++|.+.+...
T Consensus 172 ~gi~~L~~~l~~~ 184 (192)
T cd01889 172 GGEAELGKDLNNL 184 (192)
T ss_pred CCHHHHHHHHHhc
Confidence 9999988877654
No 185
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.40 E-value=1.7e-06 Score=69.78 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHh-h-CCCCEEEEEecCCCCChHH---HHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~~---~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|+|++.+.+..+...... . .++|+++|+||+|+.+... .+++.+.+.-....++.+||++|.|++++.+
T Consensus 91 ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 170 (179)
T cd01890 91 CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLE 170 (179)
T ss_pred cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHH
Confidence 689999999998766544332222 2 3679999999999964321 2233332211112478899999999998877
Q ss_pred HHHH
Q 025200 76 LAKA 79 (256)
Q Consensus 76 ~i~~ 79 (256)
.+.+
T Consensus 171 ~l~~ 174 (179)
T cd01890 171 AIVE 174 (179)
T ss_pred HHHh
Confidence 7654
No 186
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.40 E-value=7.6e-07 Score=70.13 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+..... ...+.++... ..+.... .+.++||||-.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 379999999999999999999765432 2222222222 2232222 47899999953
No 187
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.39 E-value=6.8e-07 Score=85.51 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=46.3
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-CC-cEEEEecCCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GK-DLEFLDSPGIIP 154 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~-~~~l~DtPGi~~ 154 (256)
..++.+|+++|++|+|||||+|+|.+... ..+..+|+|.+..... . +. .+.++||||-..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~ 147 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA 147 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence 45678999999999999999999997654 3455678888765333 2 23 699999999753
No 188
>COG2262 HflX GTPases [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=78.85 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=63.3
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHh---h--CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQW---L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~---l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++|+||.+|......+ ..+. + .++|.|+|+||+|+++...... .+.......+++||++|.|++.|+
T Consensus 272 aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~---~~~~~~~~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 272 ADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILA---ELERGSPNPVFISAKTGEGLDLLR 348 (411)
T ss_pred CCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhh---hhhhcCCCeEEEEeccCcCHHHHH
Confidence 69999999999993322111 1122 2 2689999999999987664211 122212357899999999999999
Q ss_pred HHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCc
Q 025200 75 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVG 109 (256)
Q Consensus 75 ~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvG 109 (256)
+.+.......... --..+++.+.|
T Consensus 349 ~~i~~~l~~~~~~-----------~~l~lp~~~~~ 372 (411)
T COG2262 349 ERIIELLSGLRTE-----------VTLELPYTDAG 372 (411)
T ss_pred HHHHHHhhhcccc-----------eEEEcCccccc
Confidence 9888776543211 12566777777
No 189
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.39 E-value=1e-06 Score=70.12 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=35.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++.+...... .+..+.+........+. .+.++||||--
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 4799999999999999999987543221 11122222111222322 36799999964
No 190
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.39 E-value=1.3e-06 Score=78.14 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=56.2
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-------CCCCEEEEEecCCCCChHHHH--HHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~--~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|++++|+|+..+.+..+ ..+.+.+ .++|.++|+||+|+.+.+... .+..+++..+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 589999999986542111 1121212 368999999999998654322 222233444567899999999999
Q ss_pred hHHHHHHHHHHhh
Q 025200 71 MKLSRLAKALASD 83 (256)
Q Consensus 71 ~~L~~~i~~l~~~ 83 (256)
+++.+.+.+...+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9998888766543
No 191
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.39 E-value=1.7e-06 Score=71.63 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh---C--CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL---G--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l---~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++|+|++++.+..+. .+.+++ . ++|+++|+||+|+.+..... ..+...+.+++++||+++.|++++.
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHHHHH
Confidence 5899999999988765432 222222 2 57999999999998765443 2333445678899999999998887
Q ss_pred HHHHH
Q 025200 75 RLAKA 79 (256)
Q Consensus 75 ~~i~~ 79 (256)
+.+.+
T Consensus 198 ~~L~~ 202 (204)
T cd01878 198 EAIEE 202 (204)
T ss_pred HHHHh
Confidence 76543
No 192
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.39 E-value=1.2e-06 Score=70.25 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCce--eeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||++++.+.... ....|..+ .....+.++. .+.++||||..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 468999999999999999999875431 11222222 1122233333 47899999964
No 193
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.38 E-value=2e-06 Score=65.14 Aligned_cols=79 Identities=23% Similarity=0.211 Sum_probs=65.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
+|++++|..|.+|.+...|-+.... .+|+|-|++|+||+.++++..-.+++.+.| .+++.+|+.+..|+++|.+.+..
T Consensus 65 advi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 65 ADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 6899999999999999888886544 467999999999997777777777777777 56777999999999999887654
Q ss_pred H
Q 025200 80 L 80 (256)
Q Consensus 80 l 80 (256)
.
T Consensus 144 ~ 144 (148)
T COG4917 144 L 144 (148)
T ss_pred h
Confidence 3
No 194
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.38 E-value=7.7e-07 Score=71.47 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=37.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++.+.......+..|.++. .+.. ...+.++||||-.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcH
Confidence 379999999999999999998643334444555432 2333 3458899999953
No 195
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.38 E-value=1.2e-06 Score=70.28 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=35.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||+|++.+.... .....++.+. ..+.++. .+.++||||--.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47999999999999999999876532 1122222211 1233333 267899999743
No 196
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.38 E-value=1.3e-06 Score=72.35 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=37.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||++++.+.... ...+..|+......+..+. .+.++||||-.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 579999999999999999999976532 1122223222222333332 47799999964
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.38 E-value=1.1e-06 Score=74.94 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=36.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcc--cC---------------CCCCceeeeEEEE--e-CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCP--AA---------------PRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~--~~---------------~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|+|||||+++|....... .+ ...|+|....... . +..+.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 37999999999999999998642211 11 1123343332222 2 44689999999964
No 198
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.37 E-value=7.1e-08 Score=76.82 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHH----HHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR----NAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~----~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
.|+|+.|+||+.. .++..+...+ .++|.++|+||+|++.+... +.+.+ ..|.+++++||++++|+++|+
T Consensus 79 ~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~---~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE---RLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH---HHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH---HhCCCEEEEEeCCCcCHHHHH
Confidence 5999999999863 3344443333 27999999999999876532 33333 347889999999999999988
Q ss_pred HHH
Q 025200 75 RLA 77 (256)
Q Consensus 75 ~~i 77 (256)
+.+
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 754
No 199
>PRK09866 hypothetical protein; Provisional
Probab=98.37 E-value=2e-06 Score=81.73 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=59.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--C--CCEEEEEecCCCCC-----hHHHHHHHH-HHHHc---CCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS-----MADRNAWAT-YFAKQ---GTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~--k~~ilVlNK~DL~~-----~~~~~~w~~-~~~~~---~~~vi~~sa~~~ 67 (256)
+|+|++|+|++.+.+..+..+.+.++ + .|+++|+||+|+.+ .+.+.++.+ ++.+. ...++++||+.|
T Consensus 259 ADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG 338 (741)
T PRK09866 259 ASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWG 338 (741)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Confidence 69999999999887777777766665 3 39999999999986 333444443 22222 246899999999
Q ss_pred cchhHHHHHHHH
Q 025200 68 MGTMKLSRLAKA 79 (256)
Q Consensus 68 ~g~~~L~~~i~~ 79 (256)
.|++.|.+.+..
T Consensus 339 ~nid~LLdeI~~ 350 (741)
T PRK09866 339 YLANRARHELAN 350 (741)
T ss_pred CCHHHHHHHHHh
Confidence 999999888765
No 200
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.37 E-value=1.4e-06 Score=69.11 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=35.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.||||||||++++....... ..+.++.+. ..+.++. .+.++||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999998754322 222222211 2233332 36789999964
No 201
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.36 E-value=7.1e-07 Score=77.97 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=35.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccC-CCC------CceeeeE--EEEe-----CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVLK--WVRF-----GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~------g~T~~~~--~~~~-----~~~~~l~DtPGi~~~ 155 (256)
.++|++||-+|+|||||||+|.+....... ..+ ..|..+. ...+ .-++.++||||+-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 478999999999999999999987554432 111 1111121 1222 124789999999653
No 202
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.33 E-value=1.2e-06 Score=71.94 Aligned_cols=53 Identities=25% Similarity=0.225 Sum_probs=34.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++...... ...++++.+. ..+.++. .+.++||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 4799999999999999999865432 2233333221 1222322 37789999963
No 203
>PRK12735 elongation factor Tu; Reviewed
Probab=98.33 E-value=1.3e-06 Score=80.05 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=43.2
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcC------CCc---------ccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~------~~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
+..++|+++|++|+|||||+|+|++. ... ......|+|.+...... +..+.++||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 35789999999999999999999862 111 11125689988755544 3358999999973
No 204
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.33 E-value=1.4e-06 Score=71.05 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=36.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||++++.........+..|.+ ...+.. +-.+.++||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~--~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFN--VETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccc--eEEEEECCEEEEEEECCCCH
Confidence 578999999999999999999754433222222222 222222 2357899999974
No 205
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.33 E-value=1.8e-06 Score=69.20 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=35.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||+|++..... ....+..|.......+... -.+.++||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 3799999999999999999985432 1222223332222222222 2478999999754
No 206
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.32 E-value=3.2e-06 Score=83.14 Aligned_cols=60 Identities=30% Similarity=0.510 Sum_probs=46.9
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
..++..|+++|++|+|||||+++|.+... ..+..+|+|.+.....+ +..+.++||||...
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~ 349 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA 349 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence 45788999999999999999999987554 35566788877654333 35689999999754
No 207
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.32 E-value=2.9e-06 Score=65.78 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=58.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHHHHHH---H--HHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWAT---Y--FAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~---~--~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+..+.......+.... .+.|.++|+||+|+.+......|.+ . ....+.+++.+|++++.|++++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 5899999999988777665422222 3789999999999998877666642 1 1223467888999999999888
Q ss_pred HHHHHH
Q 025200 74 SRLAKA 79 (256)
Q Consensus 74 ~~~i~~ 79 (256)
.+.+.+
T Consensus 156 ~~~l~~ 161 (163)
T cd00880 156 REALIE 161 (163)
T ss_pred HHHHHh
Confidence 877654
No 208
>PLN03110 Rab GTPase; Provisional
Probab=98.31 E-value=2.1e-06 Score=72.08 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=38.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||++++.+..... ..+..|++.....+.++. .+.++||||-.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 5799999999999999999999765422 122223332223344433 57899999964
No 209
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.31 E-value=3.4e-06 Score=67.15 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|+|+..+.+..+. .+...+ .+.|+++|+||+|+.+. ...+..++.+..+.+++.+||++|.|++++.+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 5899999999877554321 222222 26799999999999543 22333344344456788999999999998877
Q ss_pred HHHHH
Q 025200 76 LAKAL 80 (256)
Q Consensus 76 ~i~~l 80 (256)
.+.+.
T Consensus 152 ~l~~~ 156 (161)
T cd04124 152 DAIKL 156 (161)
T ss_pred HHHHH
Confidence 66543
No 210
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.31 E-value=1.7e-06 Score=69.44 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=35.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|++.+... .. +..|..... +.. ...+.++||||...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEEECCEEEEEEECCCChh
Confidence 479999999999999999997632 12 233433322 222 23578999999753
No 211
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.31 E-value=2.2e-06 Score=67.97 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCce---eeeEEEEeC----CcEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT---RVLKWVRFG----KDLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T---~~~~~~~~~----~~~~l~DtPGi 152 (256)
++|+++|.+|||||||++++.+...........++ .....+... ..+.++||||.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH
Confidence 47999999999999999999864222222222222 111222222 24789999995
No 212
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.30 E-value=2.4e-06 Score=83.63 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=40.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCc-----ccCC------------CCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~-----~~~~------------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|++|+|||||+|+|...... .+.+ ..|+|.+.....+ +..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 47999999999999999999742211 1111 3577776543222 45689999999975
No 213
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.30 E-value=2.2e-06 Score=70.92 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=36.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeC--C--cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG--K--DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~--~--~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.... ....|.+..+ ...+..+ . .+.++||||-.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 47999999999999999999975432 1122322222 2333433 2 37899999974
No 214
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.3e-06 Score=73.38 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=39.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccC-------CCCCceeeeE-EEEe-----CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRVLK-WVRF-----GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~-------~~~g~T~~~~-~~~~-----~~~~~l~DtPGi~~~ 155 (256)
.++||+||-++.||||++|+|...+....+ ++|-||---. ..-+ .-++.++||||+-..
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 588999999999999999999976654433 2233321110 1111 224789999999763
No 215
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.30 E-value=1.8e-06 Score=68.74 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=35.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++...... +..|.+......+.. .-.+.++||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 37999999999999999999654332 223322222222222 2357899999974
No 216
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.30 E-value=2.1e-06 Score=78.42 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCCCCCCC-----HHHHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHHHHc-C--CeEEEecCc
Q 025200 1 MDVVIEVRDARIPLSTTH-----PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQ-G--TKVIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-----~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-~--~~vi~~sa~ 65 (256)
+|++++|+|+... ...+ ..+.+.+ .++|.++|+||+|+.+.+...+..+.+.+. + ..++++||+
T Consensus 238 advlL~VVD~s~~-~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPI-DGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcc-cccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 6899999998722 1111 1121211 258999999999998766555555444332 3 368899999
Q ss_pred CCcchhHHHHHHHHHHhhh
Q 025200 66 LGMGTMKLSRLAKALASDV 84 (256)
Q Consensus 66 ~~~g~~~L~~~i~~l~~~~ 84 (256)
++.|+++|.+.+.+++++.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999998888776653
No 217
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.29 E-value=2.4e-06 Score=69.39 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH----HHHHHHHHHHcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~--~~vi~~sa~~~~g~ 70 (256)
+|.+++|+|++.+++..+..+.+++. ++|+++|+||+|+.+... .+++.+.+...+ .+++.+||++|+|+
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 37899999999887776665555553 689999999999986543 344555555543 37899999999986
No 218
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.29 E-value=1.1e-06 Score=76.16 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
+|+++|.+|+|||||+|+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999999999753
No 219
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.28 E-value=2.6e-06 Score=68.79 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++|+++|.+|||||||+|++.+.+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 220
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.28 E-value=2.4e-06 Score=69.58 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=35.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeC--C--cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~--~--~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.... ....|.+..+. ..+... . .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 47999999999999999999976532 22223222221 122222 2 36899999953
No 221
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.27 E-value=2.8e-06 Score=68.78 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=37.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||++++...... ...|.+..+...+.. ...+.++||||...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccceEEEEECCEEEEEEECCCChh
Confidence 578999999999999999999644332 223432222222322 23578999999743
No 222
>PTZ00369 Ras-like protein; Provisional
Probab=98.27 E-value=3e-06 Score=69.41 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=36.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||++++.+..... ..+..|.+.. ..+.++. .+.++||||.-.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCcc
Confidence 5789999999999999999999754321 1122222211 1222332 367899999754
No 223
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.27 E-value=2.2e-06 Score=79.80 Aligned_cols=75 Identities=31% Similarity=0.382 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|++++|+|+..|.+..+..+.....++|+++|+||+|+.+..... ...+..++.+|+++|.|+++|.+.+.+.
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 6999999999988765544433334578999999999997654322 2234567899999999999988877654
Q ss_pred H
Q 025200 81 A 81 (256)
Q Consensus 81 ~ 81 (256)
.
T Consensus 369 l 369 (449)
T PRK05291 369 A 369 (449)
T ss_pred H
Confidence 3
No 224
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.26 E-value=3.5e-06 Score=67.15 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=36.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..+|+++|.+|||||||++++.+... ..+..+.++.+. ..+.... .+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 47899999999999999999986433 222223232222 1233332 36789999964
No 225
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.26 E-value=3.2e-06 Score=67.33 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++.+.... ....|.+..+. ..+..+. .+.++||||-.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 36899999999999999999976542 22233222222 2333332 46789999964
No 226
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.26 E-value=6.5e-06 Score=67.36 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=59.3
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHH----HHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~----w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+++++|+|++.+.+.....+.+++. +.|+++++||+|+.+..+.+. ..+.+......++++|++++.|++++.+
T Consensus 108 ~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~ 187 (196)
T PRK00454 108 KGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRA 187 (196)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHH
Confidence 6788999999887665544545443 578999999999987654433 3333433346788999999999999998
Q ss_pred HHHHHHh
Q 025200 76 LAKALAS 82 (256)
Q Consensus 76 ~i~~l~~ 82 (256)
.+.+++.
T Consensus 188 ~i~~~~~ 194 (196)
T PRK00454 188 AIAKWLA 194 (196)
T ss_pred HHHHHhc
Confidence 8877654
No 227
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.26 E-value=2.5e-06 Score=71.47 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=36.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC----cEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK----DLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~----~~~l~DtPGi 152 (256)
++|+++|.+|||||||+|++.+... .....|.++.+. ..+.++. .+.++||||-
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 4789999999999999999997543 223334333333 2233322 4689999995
No 228
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.25 E-value=3.4e-06 Score=63.39 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=36.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc---ccCCCCCceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~---~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
||+++|.+||||||||++|.+.... ......+.|......... ..+.+.|++|-..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999987654 122333444443333332 1378899999954
No 229
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.25 E-value=2.6e-06 Score=68.28 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=34.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~~ 154 (256)
|+++|.+|||||||+|++.+... .....|.+.... ..+.++. .+.++||||...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 57999999999999999997653 222223222211 2233332 378999999753
No 230
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.25 E-value=1.9e-06 Score=68.99 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCC-----CCCC--H----HHHHh--------hCCCCEEEEEecCCCCChHHHHHHH--HHHHHcCCeE
Q 025200 1 MDVVIEVRDARIPL-----STTH--P----LMDQW--------LGNRKRILVLNREDMISMADRNAWA--TYFAKQGTKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-----~~~~--~----~l~~~--------l~~k~~ilVlNK~DL~~~~~~~~w~--~~~~~~~~~v 59 (256)
+|++++|+|+..+. .+.+ . .+... +.++|+++|+||+|+.+......|. ......+..+
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEV 154 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCE
Confidence 68999999998874 2111 0 11111 1368999999999998877666662 2222334668
Q ss_pred EEecCcCCcchhHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~ 78 (256)
+.+|++.+.|++++.+.+.
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 155 VPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EEEehhhhcCHHHHHHHHH
Confidence 8999999999988877553
No 231
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.24 E-value=3.3e-06 Score=71.18 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCc-cc-CCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMC-PA-APRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~-~~-~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++.+.... .. ....+.+.....+.+ ...+.++||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 37999999999999999999754432 11 111111222222333 2347899999986
No 232
>PLN03127 Elongation factor Tu; Provisional
Probab=98.24 E-value=2.5e-06 Score=79.24 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=43.6
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcC------CCc---------ccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~------~~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
+..++|+++|++|+|||||+++|.+. ... .....+|+|.+...... +..+.++||||..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 35789999999999999999999732 111 12234799998765555 2358999999984
No 233
>PLN03108 Rab family protein; Provisional
Probab=98.24 E-value=4.2e-06 Score=69.93 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=38.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|++.+...... .+..|.+.....+.+.. .+.++||||..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 47899999999999999999997654322 12233333333344432 47799999964
No 234
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.24 E-value=5.3e-06 Score=77.17 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCC-CCCCC-HH--HHHhhCCCCEEEEEecCCCCChHHHHH----HHHHHHH---cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIP-LSTTH-PL--MDQWLGNRKRILVLNREDMISMADRNA----WATYFAK---QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p-~~~~~-~~--l~~~l~~k~~ilVlNK~DL~~~~~~~~----w~~~~~~---~~~~vi~~sa~~~~g 69 (256)
+|++++|+||..+ ..... +. +.+.++-++.|+|+||+|+++.+...+ +.++++. .+.+++++||.+|.|
T Consensus 141 ~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n 220 (460)
T PTZ00327 141 MDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN 220 (460)
T ss_pred CCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence 6999999999975 33221 22 222344567899999999997654333 3333322 246789999999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
++.|++.+.+..+
T Consensus 221 I~~Ll~~L~~~lp 233 (460)
T PTZ00327 221 IDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHhhCC
Confidence 9999998885443
No 235
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.23 E-value=4.2e-06 Score=67.45 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=35.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC---CcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~---~~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++.+... .....|.+..+.. .+... ..+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 689999999999999999997643 1122232222222 22222 247899999974
No 236
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.23 E-value=2.4e-06 Score=68.06 Aligned_cols=54 Identities=28% Similarity=0.421 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
+|+++|.||||||||++++..... .+..+.++.. ...+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 479999999999999999986432 3334444322 12223333 367999999874
No 237
>PRK00007 elongation factor G; Reviewed
Probab=98.23 E-value=3e-06 Score=82.96 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=40.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-----cccC------------CCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~-----~~~~------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|.+|+|||||+|+|..... ..+. ...|+|.+.....+ +..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4799999999999999999973111 1122 25688877533222 55799999999753
No 238
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.22 E-value=4.9e-06 Score=67.17 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=36.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCcee-eeE-EEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLK-WVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~-~~~-~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||++++.+.... .....++. ... .+.++. .+.++||||...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE 62 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh
Confidence 468999999999999999999875432 11111221 111 223332 378899999753
No 239
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.22 E-value=4.3e-06 Score=69.97 Aligned_cols=55 Identities=27% Similarity=0.408 Sum_probs=37.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC--C--cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--K--DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~--~--~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.+.... ..|.++.+.. .+.+. . .+.++||||-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 6899999999999999999997654332 2233333321 22222 2 47899999963
No 240
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.21 E-value=8.7e-06 Score=66.80 Aligned_cols=80 Identities=21% Similarity=0.165 Sum_probs=61.3
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHH----cC---CeEEEecCcCCcchhH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK----QG---TKVIFSNGQLGMGTMK 72 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~----~~---~~vi~~sa~~~~g~~~ 72 (256)
..+++|+|+|.|+...+.++.+++. +.|.++|+||+|.++..+..+.+...++ .. ..++++|+.++.|+++
T Consensus 108 ~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 108 KGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHH
Confidence 3689999999999988888888876 6899999999999987655433333332 11 1277889999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 188 l~~~i~~~~ 196 (200)
T COG0218 188 LKAKILEWL 196 (200)
T ss_pred HHHHHHHHh
Confidence 888877654
No 241
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.21 E-value=4.1e-06 Score=68.31 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=36.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 152 (256)
.++|+++|.+|||||||++++.........+..|. +...+.. +-.+.++||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~--~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccCCcce--eEEEEEECCEEEEEEECCCC
Confidence 57899999999999999999986443322222232 2222332 335889999995
No 242
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.21 E-value=2.4e-06 Score=81.84 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=40.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC--cccCCCCCceeeeEEEEe---CCcEEEEecCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~--~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 152 (256)
.|+++|++|+|||||+|+|++... ......+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 589999999999999999997542 222345788887754332 245789999995
No 243
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.20 E-value=8.7e-06 Score=64.64 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH--HHHHHHHHHHH-------cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAK-------QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~-------~~~~vi~~sa~~~~g 69 (256)
+|++++|+|+..+...........+ .++|.++|+||+|+.... ........+.. ...+++.+|+++|.|
T Consensus 74 ~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 74 TDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 6899999999876533222222222 368999999999997432 11111111111 124678999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++++.+.+.++.
T Consensus 154 i~~l~~~l~~~~ 165 (168)
T cd01887 154 IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHHhh
Confidence 999988876654
No 244
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.19 E-value=6.1e-06 Score=69.45 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=40.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||++++...+. ....+..|++.....+..+ -.+.++||||--.
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 468999999999999999999875442 2234444555443333222 2578999999753
No 245
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.19 E-value=2.6e-06 Score=81.56 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=27.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-Cceee
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV 134 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-g~T~~ 134 (256)
+..|+++|.+|+|||||+|+|.+... +...| |+|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~ 40 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH 40 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence 45699999999999999999998643 33344 46654
No 246
>PRK00049 elongation factor Tu; Reviewed
Probab=98.19 E-value=2.7e-06 Score=77.92 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=43.7
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCC------Cc---------ccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~------~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
...++|+++|++|+|||||+++|++.. .. ......|+|.+...... +..+.++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 356899999999999999999998631 10 11125799988765554 3458899999973
No 247
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.18 E-value=6e-06 Score=66.24 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=34.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee-eEEEEeCC---cEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||++++.+..... ...|.+... ...+.++. .+.++||||.-
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 68999999999999999999754321 111211111 11223322 46899999974
No 248
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.18 E-value=4e-06 Score=70.70 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=36.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||++++...+.... .|-+..+...... ...+.++||||-..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~--~~Tig~~~~~~~~~~~~l~iwDt~G~e~ 56 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT--VSTVGGAFYLKQWGPYNISIWDTAGREQ 56 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC--CCccceEEEEEEeeEEEEEEEeCCCccc
Confidence 4789999999999999999997664322 2211111111111 23578999999753
No 249
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.18 E-value=6.7e-06 Score=71.38 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
+|+++|++|+|||||+|+|+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 250
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.18 E-value=2.6e-06 Score=83.08 Aligned_cols=59 Identities=25% Similarity=0.484 Sum_probs=43.7
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-----CCcEEEEecCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGII 153 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-----~~~~~l~DtPGi~ 153 (256)
..++..|+++|++|+|||||+++|.+... ..+..+|+|.+...+. + +..+.++||||.-
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 45678999999999999999999987554 3345577776643221 1 2468999999963
No 251
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.16 E-value=5.6e-06 Score=76.21 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCC-----CCCCC---HHHHHh---hCCCCEEEEEecCCCCChH-HHHHHHHHHHHcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIP-----LSTTH---PLMDQW---LGNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p-----~~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~-~~~~w~~~~~~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+ +.... .++..+ +.++|.++|+||+||.... ..+++.+ ..+.+++++||+++.
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~---~l~~~i~~iSA~tge 313 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE---KLGPKVFPISALTGQ 313 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH---HhCCcEEEEeCCCCC
Confidence 5899999999643 21111 112221 2368999999999985332 2233333 333578899999999
Q ss_pred chhHHHHHHHHHHhh
Q 025200 69 GTMKLSRLAKALASD 83 (256)
Q Consensus 69 g~~~L~~~i~~l~~~ 83 (256)
|+++|.+.+.+....
T Consensus 314 GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 GLDELLYAVAELLEE 328 (424)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999998888766543
No 252
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.16 E-value=3.4e-06 Score=66.58 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=50.0
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH------HcCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~------~~~~~vi~~sa~~~ 67 (256)
+|++++|+|++++.+.. ...+.+.+ .+.|+++|+||+|+.......+....+. +.+..++.+||++|
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence 58999999999875321 12233332 3579999999999964322222222221 12235778999999
Q ss_pred cchhHHHHHHH
Q 025200 68 MGTMKLSRLAK 78 (256)
Q Consensus 68 ~g~~~L~~~i~ 78 (256)
.|++++.+.+.
T Consensus 148 ~gv~~~~~~i~ 158 (160)
T cd04156 148 EGLAEAFRKLA 158 (160)
T ss_pred CChHHHHHHHh
Confidence 99998877653
No 253
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.15 E-value=3.8e-06 Score=67.63 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+.+..+ ..+..++ .+.|+++|+||+|+......++..+.+. ..+.+++.+||++|.
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 589999999987743221 2233322 3679999999999975432233333332 223568899999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 162 gi~~l~~~l 170 (173)
T cd04154 162 GLLQGIDWL 170 (173)
T ss_pred CHHHHHHHH
Confidence 998877654
No 254
>PRK13768 GTPase; Provisional
Probab=98.14 E-value=5.1e-06 Score=71.55 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHHH--------------------
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFA-------------------- 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~~-------------------- 53 (256)
.|++++|+|++.+....+.....++ .++|.++|+||+|+++..+.++..++++
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 208 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS 208 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH
Confidence 4799999999876554433332221 3689999999999997765433333222
Q ss_pred --------HcC--CeEEEecCcCCcchhHHHHHHHHHHh
Q 025200 54 --------KQG--TKVIFSNGQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 54 --------~~~--~~vi~~sa~~~~g~~~L~~~i~~l~~ 82 (256)
+.+ .+++.+|++++.|+++|.+.+.+...
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 223 46788999999999999988877653
No 255
>PRK12739 elongation factor G; Reviewed
Probab=98.14 E-value=3.9e-06 Score=82.15 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=40.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC-----cccC------------CCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~-----~~~~------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
-.+|+++|++|+|||||+|+|..... ..+. ...|+|.+.....+ +..+.++||||...
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35799999999999999999974211 1122 25688877643332 45689999999853
No 256
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.14 E-value=5.4e-06 Score=68.45 Aligned_cols=54 Identities=28% Similarity=0.390 Sum_probs=35.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||+|++.+.... ...+.++... ..+.+.. .+.++||||...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 59 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh
Confidence 4799999999999999999976532 2233333222 1222322 578999999753
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.14 E-value=2e-06 Score=83.43 Aligned_cols=27 Identities=37% Similarity=0.378 Sum_probs=23.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
..++|+++|.+|+|||||+|+|.....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC
Confidence 468899999999999999999997543
No 258
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.13 E-value=1.2e-05 Score=77.05 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCC-EEEEEecCCCCChHHHH----HHHHHHHHc----CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~----~w~~~~~~~----~~~vi~~sa~~~~g 69 (256)
+|++++|+|++.+......+...++ .+.| .++|+||+|+++.+... +..++++.. +.+++++|+++|.|
T Consensus 74 aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 74 IDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 6999999999986543322222222 2456 99999999999866432 222333332 35788999999999
Q ss_pred hhHHHHHHHHHHhhh
Q 025200 70 TMKLSRLAKALASDV 84 (256)
Q Consensus 70 ~~~L~~~i~~l~~~~ 84 (256)
++++.+.+.++....
T Consensus 154 I~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 154 IGELKKELKNLLESL 168 (581)
T ss_pred chhHHHHHHHHHHhC
Confidence 999988887766543
No 259
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.13 E-value=5.2e-06 Score=76.04 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=43.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC------CCcc---------cCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~------~~~~---------~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
..++|+++|++|+|||||+++|++. .... .....|+|.+...+.. +..+.++||||..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 4689999999999999999999842 1111 1123799988765555 2358899999974
No 260
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.13 E-value=1.6e-05 Score=62.49 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.8
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHH----H--HcCCeEEEecCcCCcchhHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF----A--KQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~----~--~~~~~vi~~sa~~~~g~~~L 73 (256)
++++.|+|+..+.+.....+.+++. +.|+++|+||+|+.++.........+ + ....+++++|++++.+..++
T Consensus 83 ~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 83 KGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred hEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHH
Confidence 6789999998876655555555554 57999999999998765443333222 2 12356889999999999998
Q ss_pred HHHHHHH
Q 025200 74 SRLAKAL 80 (256)
Q Consensus 74 ~~~i~~l 80 (256)
.+.+.++
T Consensus 163 ~~~l~~~ 169 (170)
T cd01876 163 RALIEKW 169 (170)
T ss_pred HHHHHHh
Confidence 8877654
No 261
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.12 E-value=7.1e-06 Score=68.41 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=37.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC----cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK----DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~----~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||+|++.+...........++.......... .+.++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence 789999999999999999999765543222111222222222222 378999999854
No 262
>PRK12736 elongation factor Tu; Reviewed
Probab=98.12 E-value=4.8e-06 Score=76.27 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=42.8
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCC------Cc---------ccCCCCCceeeeEEEEe---CCcEEEEecCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 152 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~------~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 152 (256)
+..++|+++|++++|||||+++|++.. .. ......|+|.+...... +..+.++||||.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 347899999999999999999998621 11 11125699988765554 345889999995
No 263
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.12 E-value=1.1e-05 Score=64.28 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCH-HH----HHhhC-----CCCEEEEEecCCCCChH--HHHHHHHHHHHcC-CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM----DQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQG-TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l----~~~l~-----~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~-~~vi~~sa~~~ 67 (256)
+|++|+|+|+.++.+..+. .+ ..... +.|+++|+||+|+.++. ..+....+.+..+ ..++.+|+++|
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 152 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEA 152 (172)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCC
Confidence 6899999999987643222 11 11122 57999999999998322 1222233334444 67889999999
Q ss_pred cchhHHHHHHHHHH
Q 025200 68 MGTMKLSRLAKALA 81 (256)
Q Consensus 68 ~g~~~L~~~i~~l~ 81 (256)
.|++++.+.+.+.+
T Consensus 153 ~gv~~l~~~i~~~~ 166 (172)
T cd01862 153 INVEQAFETIARKA 166 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998887766543
No 264
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.11 E-value=5.5e-06 Score=65.51 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=50.1
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+..+.+.. ...+..++ .++|+++|+||+|+.+.....+..+.+. ..+.+++++||++|.
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGE 146 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence 68999999998763221 12232222 2589999999999975432233333332 112358899999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 147 gi~~l~~~l 155 (158)
T cd04151 147 GLDEGMDWL 155 (158)
T ss_pred CHHHHHHHH
Confidence 998887654
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.11 E-value=7.7e-06 Score=68.03 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=36.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-----CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|||||||++.|.......+ .+.++........ +..+.++||||...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence 589999999999999999997643222 2222222222222 34589999999753
No 266
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.11 E-value=1e-05 Score=64.77 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|.|..++.+..+. .+...+ .+.|+++|.||+|+.......+-.++.+..+..++.+||++|.|++++.+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHH
Confidence 6899999999877554321 121222 26899999999999743321111223334456788999999999998877
Q ss_pred HHHH
Q 025200 76 LAKA 79 (256)
Q Consensus 76 ~i~~ 79 (256)
.+.+
T Consensus 153 ~l~~ 156 (166)
T cd00877 153 WLAR 156 (166)
T ss_pred HHHH
Confidence 6654
No 267
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.10 E-value=1.4e-05 Score=77.03 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHHH----HHHHHHHHHcC---CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADR----NAWATYFAKQG---TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~----~~w~~~~~~~~---~~vi~~sa~~~~g~ 70 (256)
+|++++|+|++.++.....+...++. +.| .++|+||+|+++++.. +++.+++...+ .+++.+|+++|.|+
T Consensus 75 ~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 75 IDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 69999999999876654444333332 455 5799999999876543 23444444433 56889999999999
Q ss_pred hHHHHHHHHHHhh
Q 025200 71 MKLSRLAKALASD 83 (256)
Q Consensus 71 ~~L~~~i~~l~~~ 83 (256)
++|.+.+.++...
T Consensus 155 ~~L~~~L~~~~~~ 167 (614)
T PRK10512 155 DALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHhhcc
Confidence 9999988876543
No 268
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.10 E-value=9.5e-06 Score=66.12 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=50.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH--Hc----CCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--KQ----GTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~--~~----~~~vi~~sa~~~ 67 (256)
+|++++|+|+.++.+..+ ..+.++. .++|+++|+||+|+........+...+. .. +..++.+||+++
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 689999999987632211 1122221 2589999999999864222222222211 11 134678999999
Q ss_pred cchhHHHHHHHHHH
Q 025200 68 MGTMKLSRLAKALA 81 (256)
Q Consensus 68 ~g~~~L~~~i~~l~ 81 (256)
.|++++.+.+.+..
T Consensus 156 ~gi~~l~~~l~~~l 169 (183)
T cd04152 156 EGLQEGLEKLYEMI 169 (183)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998887765444
No 269
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.10 E-value=5.6e-06 Score=65.84 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChH---HHHHHHHHHH----HcCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFA----KQGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~---~~~~w~~~~~----~~~~~vi~~sa~~ 66 (256)
+|++++|+|+..+.+... ..+..++ .+.|+++|+||+|+.+.. +..++.+.+. ..+.+++.+||++
T Consensus 74 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 74 CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 589999999987632111 1222222 257999999999986543 2333333221 1124688899999
Q ss_pred CcchhHHHHHH
Q 025200 67 GMGTMKLSRLA 77 (256)
Q Consensus 67 ~~g~~~L~~~i 77 (256)
|.|++++.+.+
T Consensus 154 g~gv~e~~~~l 164 (167)
T cd04160 154 GTGVREGIEWL 164 (167)
T ss_pred CcCHHHHHHHH
Confidence 99998876654
No 270
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.10 E-value=4.7e-06 Score=65.22 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=33.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
||+++|.+++|||||+++|.+... ....|..+++ .. ..|||||=..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~--~~IDTPGEyi 48 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YD--NTIDTPGEYI 48 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---cc--cEEECChhhe
Confidence 689999999999999999998543 2334444443 23 3599999764
No 271
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.09 E-value=7.8e-06 Score=78.39 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++..|+++|++|+|||||+|+|.+..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 356679999999999999999998754
No 272
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.08 E-value=1.2e-05 Score=65.77 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=34.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee-eEEEEeC---CcEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~---~~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||++++.+...... ..|..... ...+..+ ..+.++||||--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999997554221 12221111 1222232 247899999974
No 273
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4.3e-06 Score=77.19 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=79.5
Q ss_pred EEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHH---c---------C-------CeEEEec
Q 025200 3 VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK---Q---------G-------TKVIFSN 63 (256)
Q Consensus 3 vvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~---~---------~-------~~vi~~s 63 (256)
++..|+|-.+-+.+..+.+...+..+..+++.||.|+.+....--....+.. . + ..+..++
T Consensus 113 ~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r 192 (572)
T KOG1249|consen 113 LARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIR 192 (572)
T ss_pred ceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhh
Confidence 4567788776666777777777776677999999999987642111111111 0 0 1133467
Q ss_pred CcCCcchhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCc-----------ccCCCCCce
Q 025200 64 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAPRPGVT 132 (256)
Q Consensus 64 a~~~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~-----------~~~~~~g~T 132 (256)
++++.|+++|.-++.....- +| -+..+|.+||||||++|+|+....+ .+++-||||
T Consensus 193 ~ktgyg~eeLI~~lvd~~df-------~G------df~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTt 259 (572)
T KOG1249|consen 193 AKTGYGIEELIVMLVDIVDF-------RG------DFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTT 259 (572)
T ss_pred hhhcccHHHHHHHhhheeec-------cC------ceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccc
Confidence 78888888776655432221 11 2689999999999999999987655 345667777
Q ss_pred eeeE
Q 025200 133 RVLK 136 (256)
Q Consensus 133 ~~~~ 136 (256)
....
T Consensus 260 lsll 263 (572)
T KOG1249|consen 260 LSLL 263 (572)
T ss_pred cchh
Confidence 6543
No 274
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.08 E-value=8.1e-06 Score=64.44 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=49.7
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~ 66 (256)
+|++|+|+|+.++.+... ..+..++ .+.|+++|+||+|+.+.....++.+.+.- ....++.+||++
T Consensus 69 ~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~ 148 (162)
T cd04157 69 IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALT 148 (162)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCC
Confidence 689999999998754211 1222221 25799999999999764333333333221 112467799999
Q ss_pred CcchhHHHHHH
Q 025200 67 GMGTMKLSRLA 77 (256)
Q Consensus 67 ~~g~~~L~~~i 77 (256)
|.|++++.+.+
T Consensus 149 g~gv~~~~~~l 159 (162)
T cd04157 149 GEGLDEGVQWL 159 (162)
T ss_pred CCchHHHHHHH
Confidence 99999887665
No 275
>PLN03126 Elongation factor Tu; Provisional
Probab=98.07 E-value=9.6e-06 Score=75.92 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=42.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCc---------------ccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
+..++|+++|.+|+|||||+++|...... ......|+|.+...... +..+.++||||..
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 35789999999999999999999953211 12334688877654433 4468999999964
No 276
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.07 E-value=1.8e-05 Score=72.89 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCCC-CCCCHHHHHhh---CCCCEEEEEecCCCCChHHH----HHHHHHHHH---cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPL-STTHPLMDQWL---GNRKRILVLNREDMISMADR----NAWATYFAK---QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-~~~~~~l~~~l---~~k~~ilVlNK~DL~~~~~~----~~w~~~~~~---~~~~vi~~sa~~~~g 69 (256)
+|++++|+|++.|. .....+....+ +.+|.++|+||+|+++.+.. ++..++++. .+.+++.+||++|.|
T Consensus 109 ~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 188 (411)
T PRK04000 109 MDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVN 188 (411)
T ss_pred CCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence 59999999999876 33222222222 23578999999999875432 222233322 135688999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
+++|.+.+....
T Consensus 189 I~~L~~~L~~~l 200 (411)
T PRK04000 189 IDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhC
Confidence 999988887654
No 277
>PRK04213 GTP-binding protein; Provisional
Probab=98.07 E-value=2.1e-05 Score=64.78 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCC-----------CCHHHHHhh--CCCCEEEEEecCCCCChH--HHHHHHHHHHHc------CCeE
Q 025200 1 MDVVIEVRDARIPLST-----------THPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ------GTKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-----------~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~------~~~v 59 (256)
+|+++.|+|+...... .+..+...+ .+.|.++|+||+|+.+.. ..+++.+.+... +..+
T Consensus 91 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (201)
T PRK04213 91 ILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDII 170 (201)
T ss_pred heEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcE
Confidence 4799999998653211 012233333 268999999999997654 334444433210 1247
Q ss_pred EEecCcCCcchhHHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~ 81 (256)
+.+||++| |++++.+.+.+..
T Consensus 171 ~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 171 APISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred EEEecccC-CHHHHHHHHHHhh
Confidence 88999999 9998888776543
No 278
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.06 E-value=1.6e-05 Score=62.81 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHh----h-CCCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQW----L-GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~----l-~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+++|.+.... .+... . .+.|+++|.||+|+.+.. ..+...++.++.+.+++.+|++++.|+++
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 73 AVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 6999999999987654221 11111 1 257999999999987532 12223333344567789999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 153 l~~~i~~~ 160 (164)
T smart00175 153 AFEELARE 160 (164)
T ss_pred HHHHHHHH
Confidence 88776554
No 279
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.06 E-value=8.7e-06 Score=78.46 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=41.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc--ccCCCCCceeeeEEEEe----CCcEEEEecCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 152 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~--~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi 152 (256)
-|+++|.+|+|||||+|+|+|.... ......|+|.+..+... +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 4899999999999999999985432 33445799988754433 335789999996
No 280
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.05 E-value=1.5e-05 Score=65.31 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCCCCCCC-----HHHHHhhC-CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-----PLMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-----~~l~~~l~-~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+ ..+.+... +.|+++|+||+|+..+.. ..++....+..+.+++.+||++|.|+++
T Consensus 74 ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 74 AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVEL 153 (191)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 689999999987643221 11111122 469999999999974322 1223333344566789999999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+.+..
T Consensus 154 l~~~l~~~~~~ 164 (191)
T cd04112 154 AFTAVAKELKH 164 (191)
T ss_pred HHHHHHHHHHH
Confidence 98887665544
No 281
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.05 E-value=5.2e-06 Score=63.43 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=32.9
Q ss_pred EECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe---CCcEEEEecCCCCC
Q 025200 102 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 102 ~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~---~~~~~l~DtPGi~~ 154 (256)
++|.+|+|||||+|++.+.........+ +..+... ... ...+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYET-TIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccccc-chhheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999986652111111 1112211 111 34589999999764
No 282
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.05 E-value=1.6e-05 Score=63.95 Aligned_cols=54 Identities=22% Similarity=0.154 Sum_probs=36.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~ 153 (256)
++++++|.+|||||||++++.+... ....+.++.+.. .+.++. .+.++||||..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 4789999999999999999986542 233444443321 223332 46789999984
No 283
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.05 E-value=1.9e-05 Score=72.56 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCC-CCCCHH-H--HHhhCCCCEEEEEecCCCCChHHHHH----HHHHHHHc---CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPL-STTHPL-M--DQWLGNRKRILVLNREDMISMADRNA----WATYFAKQ---GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-~~~~~~-l--~~~l~~k~~ilVlNK~DL~~~~~~~~----w~~~~~~~---~~~vi~~sa~~~~g 69 (256)
+|++++|+||+.+. .....+ + ...++.+++++|+||+|+++.+...+ ..++++.. +.+++++||++|.|
T Consensus 104 aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 183 (406)
T TIGR03680 104 MDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNAN 183 (406)
T ss_pred CCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCC
Confidence 59999999999875 332222 2 12233467899999999987654322 22222221 35688899999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
+++|.+.+....+
T Consensus 184 i~~L~e~L~~~l~ 196 (406)
T TIGR03680 184 IDALLEAIEKFIP 196 (406)
T ss_pred hHHHHHHHHHhCC
Confidence 9999988876543
No 284
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.05 E-value=2e-05 Score=63.35 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=38.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee---eEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~---~~~~~~~~---~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||++++.+.... +..+.+|+.. ...+..+. .+.+.||+|-..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 66 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV 66 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccc
Confidence 3678999999999999999999976532 2333333321 12333332 367889999653
No 285
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.03 E-value=2e-05 Score=63.83 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee-eE-EEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~-~~-~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||++++....- ......++.+ .. .+..+. .+.++||||--.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999997543 1222222222 11 223332 467999999854
No 286
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.02 E-value=1.7e-05 Score=62.65 Aligned_cols=78 Identities=17% Similarity=0.053 Sum_probs=51.9
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh------CCCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l------~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~ 67 (256)
+|++|+|.|++++.+.... .+.+.. .+.|+++|.||+|+.++. ...+..++.++.+.+++.+||+++
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 152 (168)
T cd04119 73 TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTG 152 (168)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 5899999999987442211 122222 236899999999997322 122333333445667889999999
Q ss_pred cchhHHHHHHH
Q 025200 68 MGTMKLSRLAK 78 (256)
Q Consensus 68 ~g~~~L~~~i~ 78 (256)
.|++++.+.+.
T Consensus 153 ~gi~~l~~~l~ 163 (168)
T cd04119 153 EGVNEMFQTLF 163 (168)
T ss_pred CCHHHHHHHHH
Confidence 99998877654
No 287
>PRK11058 GTPase HflX; Provisional
Probab=98.02 E-value=2.2e-05 Score=72.59 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCCCCCCHH----HHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCCe-EEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL----MDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~----l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~-vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.+|.+..+.. +...+. ++|+++|+||+|+.+..... .... ..+.+ ++++||++|.|+++|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~-~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRD-EENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHH-hcCCCceEEEeCCCCCCHHHH
Confidence 69999999999886543321 122222 58999999999997542211 1111 12333 478999999999999
Q ss_pred HHHHHHHH
Q 025200 74 SRLAKALA 81 (256)
Q Consensus 74 ~~~i~~l~ 81 (256)
.+.+.+..
T Consensus 354 ~e~I~~~l 361 (426)
T PRK11058 354 FQALTERL 361 (426)
T ss_pred HHHHHHHh
Confidence 98877654
No 288
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.02 E-value=3.8e-05 Score=63.57 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=47.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHHHHH-----HHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA-----WATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~~-----w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+||+.+.......+..++. ++| .|+++||+|+++.++..+ ..+++.+.+ .+++++||.+|
T Consensus 89 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g 168 (195)
T cd01884 89 MDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKA 168 (195)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccc
Confidence 69999999999876655544444443 466 678999999985443222 223334333 56899999998
Q ss_pred cch
Q 025200 68 MGT 70 (256)
Q Consensus 68 ~g~ 70 (256)
.+.
T Consensus 169 ~n~ 171 (195)
T cd01884 169 LEG 171 (195)
T ss_pred cCC
Confidence 764
No 289
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.02 E-value=1e-05 Score=65.09 Aligned_cols=77 Identities=12% Similarity=0.000 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCC---hHHHHHHHHH--HHHcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMIS---MADRNAWATY--FAKQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~---~~~~~~w~~~--~~~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+ ..+.+.+ .+.|+++|.||+|+.. .+++.++.+. +......++.+||++|.
T Consensus 77 a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 689999999988743221 1232333 2479999999999864 3344444321 11112346789999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 157 gv~~~~~~l 165 (168)
T cd04149 157 GLYEGLTWL 165 (168)
T ss_pred ChHHHHHHH
Confidence 988776554
No 290
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.02 E-value=2.3e-05 Score=64.45 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH---HHHHHHHHHHH-------cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYFAK-------QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~---~~~~w~~~~~~-------~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..........+...+ .+.|.++|+||+|+.... ..+++.+++.. .+.+++++||++|.
T Consensus 89 ~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~ 168 (194)
T cd01891 89 VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGW 168 (194)
T ss_pred cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccc
Confidence 5899999999875332222222222 267999999999996432 24455555532 24578899999998
Q ss_pred chhHH
Q 025200 69 GTMKL 73 (256)
Q Consensus 69 g~~~L 73 (256)
|..++
T Consensus 169 ~~~~~ 173 (194)
T cd01891 169 ASLNL 173 (194)
T ss_pred ccccc
Confidence 87544
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.01 E-value=1.4e-05 Score=67.54 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=40.0
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
...+..|+++|.||+|||||+|+|.+.. ...++...|+.. + ....+..+.++||||.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~-i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPIT-V-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEE-E-EecCCceEEEEeCCchH
Confidence 3456789999999999999999999752 223344455321 1 11235668999999854
No 292
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=8.9e-06 Score=72.59 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=40.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc------cCCCCCceeeeEE--EEeCC-----cEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKW--VRFGK-----DLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~------~~~~~g~T~~~~~--~~~~~-----~~~l~DtPGi~~~ 155 (256)
.+++|+||-.|.|||||||+|.+..... ....|..|..+.. ..+.. ++.++||||+...
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 6899999999999999999999863321 2223333444432 22222 4788999999753
No 293
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.01 E-value=1.5e-05 Score=63.96 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhhC-----CCCEEEEEecCCCCCh---HHHHHHHHHHHH-cC--CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISM---ADRNAWATYFAK-QG--TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l~-----~k~~ilVlNK~DL~~~---~~~~~w~~~~~~-~~--~~vi~~sa~~~ 67 (256)
+|.+++|+|+.++.+.. ...+.+.+. +.|+++|.||+|+.+. ++..++..+... .+ ..++.+||++|
T Consensus 67 ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCC
Confidence 58999999998764321 122333332 3699999999999643 333333322111 11 24556899999
Q ss_pred cchhHHHHHHHH
Q 025200 68 MGTMKLSRLAKA 79 (256)
Q Consensus 68 ~g~~~L~~~i~~ 79 (256)
.|++++.+.+.+
T Consensus 147 ~gv~~~f~~l~~ 158 (169)
T cd04158 147 MGLYEGLDWLSR 158 (169)
T ss_pred CCHHHHHHHHHH
Confidence 999988776644
No 294
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.00 E-value=1.3e-05 Score=63.76 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=47.5
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+..+.+.. ...+.+.+. +.|+++|.||+||.+.....+..+.+. .....++.+||++|.
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 68999999998654321 122333332 479999999999964322222222221 112235568999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 148 gv~~~~~~l 156 (159)
T cd04150 148 GLYEGLDWL 156 (159)
T ss_pred CHHHHHHHH
Confidence 998876654
No 295
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.99 E-value=1.7e-05 Score=63.49 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=34.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
|+++|.+|||||||++++.+.... ...+..|.. ...+.. ...+.++||||-..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcc
Confidence 789999999999999999975431 111222321 112222 33578999999753
No 296
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.99 E-value=1.2e-05 Score=64.70 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh---CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCC-eEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l---~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~-~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.+|.+..+ ..+.+.+ .+.|+++|.||+|+.+.... .+..++-+..+. .++.+||+++.|++++
T Consensus 78 ~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 78 CDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 699999999987743222 1222223 25799999999999654321 111222233343 3578999999999888
Q ss_pred HHHHHHH
Q 025200 74 SRLAKAL 80 (256)
Q Consensus 74 ~~~i~~l 80 (256)
.+.+.+.
T Consensus 158 f~~l~~~ 164 (169)
T cd01892 158 FTKLATA 164 (169)
T ss_pred HHHHHHH
Confidence 7766554
No 297
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.99 E-value=2.6e-05 Score=61.72 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh----CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l----~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|.|+.++.+..+ ..+.+.+ .+.|.++|.||+|+.+..+. ..+..+-...+..++.+|++++.|++++
T Consensus 76 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 76 PSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence 689999999987644321 1111111 24799999999999755322 1222233334567788999999999988
Q ss_pred HHHHHH
Q 025200 74 SRLAKA 79 (256)
Q Consensus 74 ~~~i~~ 79 (256)
.+.+.+
T Consensus 156 ~~~l~~ 161 (164)
T cd04101 156 FESLAR 161 (164)
T ss_pred HHHHHH
Confidence 876654
No 298
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.98 E-value=2.8e-05 Score=61.11 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC-CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.+++|+|+.++.+.... .+..... +.|+++|+||+|+..... .++..++.+..+..++.+|++++.|+++
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5899999998776442211 1122222 479999999999975432 2334445555567788999999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+..
T Consensus 153 ~~~~l~~ 159 (162)
T cd04123 153 LFLSLAK 159 (162)
T ss_pred HHHHHHH
Confidence 8877643
No 299
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.98 E-value=3.1e-05 Score=61.05 Aligned_cols=79 Identities=16% Similarity=-0.005 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCCh--HHHHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISM--ADRNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~--~~~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.++.|+|..+|-+..+ ..+..+. .+.|+++|+||+|+.+. .......++..+.+.+++.+|++++.|++
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 72 GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVE 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHH
Confidence 478899999887643221 1122222 25899999999999762 12233333444456788999999999999
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++.+.+.+
T Consensus 152 ~l~~~l~~ 159 (164)
T cd04139 152 KAFYDLVR 159 (164)
T ss_pred HHHHHHHH
Confidence 98876654
No 300
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.96 E-value=3.6e-05 Score=63.59 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh-----CCCCEEEEEecCCCCChH--HHHHHHHHHHHcC-CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQG-TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l-----~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~-~~vi~~sa~~~ 67 (256)
+|++|+|.|..+|.+..+. .+...+ .+.|+++|.||+||.+.. ...+..++.+..+ ..++.+||++|
T Consensus 74 a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~ 153 (201)
T cd04107 74 AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEG 153 (201)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 5899999999887554321 122211 246999999999996321 1223333344445 57889999999
Q ss_pred cchhHHHHHHHHHH
Q 025200 68 MGTMKLSRLAKALA 81 (256)
Q Consensus 68 ~g~~~L~~~i~~l~ 81 (256)
.|++++.+.+.+..
T Consensus 154 ~~v~e~f~~l~~~l 167 (201)
T cd04107 154 INIEEAMRFLVKNI 167 (201)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998877765543
No 301
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.96 E-value=3e-05 Score=61.25 Aligned_cols=78 Identities=14% Similarity=-0.077 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|+|+.++.+..+. .+.+.. .+.|+++|+||+|+.+... .++-.++.+..+..++.+||++|.|++
T Consensus 74 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 74 GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVD 153 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHH
Confidence 5899999999876543221 111111 2569999999999975432 112222333445678899999999999
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++.+.+.
T Consensus 154 ~l~~~l~ 160 (164)
T cd04145 154 KAFHDLV 160 (164)
T ss_pred HHHHHHH
Confidence 8876654
No 302
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.96 E-value=3.2e-05 Score=63.13 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=36.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++.+..... ...| |.......+..+. .+.++||+|--
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 478999999999999999998754321 1222 2222112334432 47899999974
No 303
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.96 E-value=1.9e-05 Score=62.18 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..|.+... ..+..+. .+.|+++|+||+|+......++..+.+.. ...+++.+|+++|.
T Consensus 67 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd00878 67 TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGD 146 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCC
Confidence 589999999997743221 1222222 25799999999999864422222222221 22467889999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 147 gv~~~~~~l~ 156 (158)
T cd00878 147 GLDEGLDWLL 156 (158)
T ss_pred CHHHHHHHHh
Confidence 9988876553
No 304
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.96 E-value=1.8e-05 Score=64.00 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=34.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeC---CcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+.++..... .....| ++.+. ..+.++ -.+.++||||--
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC-cceeeeEEEEEECCEEEEEEEEECCCch
Confidence 5899999999999999999986432 111122 11111 112222 247799999964
No 305
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.95 E-value=3.4e-05 Score=63.11 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh----CCCCEEEEEecCCCCChH----H--HHHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMA----D--RNAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l----~~k~~ilVlNK~DL~~~~----~--~~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++++|.|+.++.+..+ ..+.+.+ .+.|+++|.||+|+.+.. . ..+..++....+..++.+||+++.|
T Consensus 74 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 74 AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQN 153 (193)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 689999999987744322 1122222 257999999999997532 1 1122233334456778899999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++++.+.+.+..
T Consensus 154 v~~l~~~i~~~~ 165 (193)
T cd04118 154 VDELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999888776544
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.95 E-value=1.2e-05 Score=64.26 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=27.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcccCCCCCce
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 132 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T 132 (256)
|+++|..++|||||||+|.|....+++..|.|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~ 33 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTA 33 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccccc
Confidence 689999999999999999999877777766433
No 307
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.95 E-value=2.7e-05 Score=62.18 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh----CCCCEEEEEecCCCCChHHH---HHHHHHHH-Hc-C-CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR---NAWATYFA-KQ-G-TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l----~~k~~ilVlNK~DL~~~~~~---~~w~~~~~-~~-~-~~vi~~sa~~~~ 68 (256)
+|++++|+|+.+|.+..+ ..+...+ .+.|+++|.||+|+.+.... ++....+. +. . ..++.+||+++.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 589999999988766543 1222222 25799999999999764431 22222221 11 1 367889999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 151 ~v~~lf~~~~~~ 162 (166)
T cd01893 151 NVSEVFYYAQKA 162 (166)
T ss_pred CHHHHHHHHHHH
Confidence 999888766543
No 308
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.95 E-value=5.4e-06 Score=67.92 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=39.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc-----------------cCCCCCceeeeEEEE-----eCCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~-----------------~~~~~g~T~~~~~~~-----~~~~~~l~DtPGi~ 153 (256)
-++|+++|..++|||||+++|.+..... .....|.|.+..... -...+.++||||-.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999643211 012235665543333 24569999999964
No 309
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.94 E-value=2.5e-05 Score=67.01 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=35.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
+|+++|.+|||||||+|++.+.... ....+|+.+. ..+.++. .+.++||||..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 6899999999999999999865432 1233333222 2334433 46799999974
No 310
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.94 E-value=4.6e-05 Score=60.70 Aligned_cols=80 Identities=14% Similarity=-0.004 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|.|..++.+... ..+.+.+ .+.|+++|.||+||.+... .++-.++.+..+.+++.+||++|.|+++
T Consensus 74 ~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 74 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQ 153 (165)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 589999999986643221 1111112 2468999999999975432 1222233344566788999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 154 l~~~l~~~ 161 (165)
T cd01865 154 VFERLVDI 161 (165)
T ss_pred HHHHHHHH
Confidence 87766543
No 311
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.94 E-value=1.7e-05 Score=63.95 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+.+.. ...+.+++ .+.|+++|+||+|+.......+..+.+. .....++.+||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 68999999998764321 12233333 2479999999999864322222222221 122357889999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 163 gi~e~~~~l 171 (174)
T cd04153 163 GLPEGLDWI 171 (174)
T ss_pred CHHHHHHHH
Confidence 998877654
No 312
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.94 E-value=3.2e-05 Score=63.11 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh---CCCCEEEEEecCCCCC----hH--HHHHHHH-HHHHcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMIS----MA--DRNAWAT-YFAKQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l---~~k~~ilVlNK~DL~~----~~--~~~~w~~-~~~~~~~~vi~~sa~~~~ 68 (256)
+|++++|.|+.++.+..+ ..+.... ...+.++|.||+||.. .+ ...+..+ +-+..+..++.+||++|.
T Consensus 73 a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~ 152 (182)
T cd04128 73 AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSI 152 (182)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 689999999988765433 1122221 1233478999999962 11 1122222 223445678899999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 153 ~v~~lf~~l~~~l 165 (182)
T cd04128 153 NVQKIFKIVLAKA 165 (182)
T ss_pred CHHHHHHHHHHHH
Confidence 9999887665433
No 313
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.94 E-value=2.1e-05 Score=69.87 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=39.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc----CCCCC-c--eeeeE--EEEeC-----CcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG-V--TRVLK--WVRFG-----KDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~----~~~~g-~--T~~~~--~~~~~-----~~~~l~DtPGi~~~ 155 (256)
-+++||+||-.|.||||+||+|.+...... ...+. + |..+. ...+. -++.++||||+...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 378999999999999999999998743222 11121 1 11121 12221 24789999999863
No 314
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.94 E-value=2.5e-05 Score=63.13 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.+|.+.. ...+..++ .+.|+++|+||+||.+.....+..+.+. .....++.+||++|.
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 68999999998764321 12222222 2469999999999964322122222221 111235568999999
Q ss_pred chhHHHHHHHH
Q 025200 69 GTMKLSRLAKA 79 (256)
Q Consensus 69 g~~~L~~~i~~ 79 (256)
|++++.+.+.+
T Consensus 161 gv~e~~~~l~~ 171 (175)
T smart00177 161 GLYEGLTWLSN 171 (175)
T ss_pred CHHHHHHHHHH
Confidence 99988776644
No 315
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.94 E-value=2.1e-05 Score=61.29 Aligned_cols=78 Identities=8% Similarity=0.002 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+... ..+..++ .++|+++|+||+|+.+......+.+.+. .....++.+|+++|.
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKT 147 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCC
Confidence 589999999987643211 1222222 2579999999999976544444443332 112467889999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 148 gi~~l~~~l~ 157 (159)
T cd04159 148 NIDIVLDWLI 157 (159)
T ss_pred ChHHHHHHHh
Confidence 9998877654
No 316
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.93 E-value=4e-05 Score=62.34 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=35.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||++++.+..- .....|.+.... ..+.++. .+.++||||--
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999997543 222222211111 1223332 37899999963
No 317
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.93 E-value=1.2e-05 Score=68.28 Aligned_cols=57 Identities=35% Similarity=0.511 Sum_probs=43.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EE-EeCCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~-~~~~~~~l~DtPGi~~~ 155 (256)
-+++++|+|.|||||+++.|.+-. ..+.++-|+|-... .+ +-+.+++|.|.|||+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 489999999999999999999743 35666666664432 22 23668999999999863
No 318
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.93 E-value=3.2e-05 Score=61.11 Aligned_cols=55 Identities=35% Similarity=0.468 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
||+++|.++||||||++++.+..... ..+..|.......+.... .+.++||||-.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999765321 111223333333333322 47899999953
No 319
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.93 E-value=1.9e-05 Score=62.81 Aligned_cols=78 Identities=15% Similarity=-0.012 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHHHHHH-------------HHHHHHcCC-eEE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADRNAW-------------ATYFAKQGT-KVI 60 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~~w-------------~~~~~~~~~-~vi 60 (256)
+|++++|.|+.++.+.... .+... ..+.|+++|.||+|+.+......| .++....+. .++
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 72 TDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 5899999999876543221 11111 235899999999999866533221 222233343 788
Q ss_pred EecCcCCcchhHHHHHHH
Q 025200 61 FSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 61 ~~sa~~~~g~~~L~~~i~ 78 (256)
.+|++.+.|++++.+.+.
T Consensus 152 ~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 152 ECSALTQEGVKEVFEEAI 169 (171)
T ss_pred EeecCCCCCHHHHHHHHh
Confidence 899999999988877654
No 320
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.93 E-value=3.5e-05 Score=60.84 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHH----HhhCCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMD----QWLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~----~~l~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|+++.|.|+.++.+..+. .+. +...+.|+++|.||+|+.+... .++-.++.+..+.+++.+|++++.|++++
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 5889999999877543221 111 1123679999999999975432 12223334455677889999999999888
Q ss_pred HHHHH
Q 025200 74 SRLAK 78 (256)
Q Consensus 74 ~~~i~ 78 (256)
.+.+.
T Consensus 155 ~~~l~ 159 (162)
T cd04106 155 FEYLA 159 (162)
T ss_pred HHHHH
Confidence 76654
No 321
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.92 E-value=4.2e-05 Score=63.92 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=35.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||++.+.... .....+..|.......+.... .+.++||||-.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 46899999999999999997654322 222223334333222222222 47789999963
No 322
>PTZ00099 rab6; Provisional
Probab=97.92 E-value=4.4e-05 Score=62.09 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh----CCCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l----~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+ ..+.... .+.|+++|.||+||.... ...+...+.+..+..++.+||++|.|+++
T Consensus 53 ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 53 SAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKV 132 (176)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 699999999987654322 1222222 145789999999996421 11222233333455667799999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+..++
T Consensus 133 lf~~l~~~l~~ 143 (176)
T PTZ00099 133 LFKKIAAKLPN 143 (176)
T ss_pred HHHHHHHHHHh
Confidence 88877665544
No 323
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.92 E-value=4e-05 Score=60.93 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHH----hh-CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQ----WL-GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~----~l-~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+.. +. .+.|+++|.||+|+...... ++-..+.+..+.+++.+|+++|.|+++
T Consensus 75 ~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 75 AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQ 154 (166)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHH
Confidence 5899999999876543221 1111 11 24799999999998654321 222222234456789999999999988
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 155 ~~~~i~~ 161 (166)
T cd01869 155 AFMTMAR 161 (166)
T ss_pred HHHHHHH
Confidence 8766543
No 324
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.92 E-value=2.1e-05 Score=64.23 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCCC--CCHHHHHhh-----CCCCEEEEEecCCCC---ChHHHHHHHHHHHH---------cCCeEEE
Q 025200 1 MDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMI---SMADRNAWATYFAK---------QGTKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~--~~~~l~~~l-----~~k~~ilVlNK~DL~---~~~~~~~w~~~~~~---------~~~~vi~ 61 (256)
+|.+++|+|+.+|.+. ....+.+++ .++|+++|+||+|+. +.+++.+.+..... ....++.
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence 6899999999877332 112333333 367999999999985 33344433321111 1134788
Q ss_pred ecCcCCcchhHHHHHHH
Q 025200 62 SNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~ 78 (256)
+||+++.|.+++.+.+.
T Consensus 165 ~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 165 CSVVRRMGYGEGFKWLS 181 (184)
T ss_pred eecccCCChHHHHHHHH
Confidence 99999999988877654
No 325
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.92 E-value=4e-05 Score=61.79 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|.|+.++.+..+. .+...+ .+.|+++|.||+|+.+... .++..++.++.+.+++.+||++|.|++
T Consensus 87 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~ 166 (180)
T cd04127 87 AMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVE 166 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 6899999999876554332 111111 2458999999999975321 122222333445678899999999999
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++.+.+.+
T Consensus 167 ~l~~~l~~ 174 (180)
T cd04127 167 KAVERLLD 174 (180)
T ss_pred HHHHHHHH
Confidence 88877654
No 326
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.92 E-value=3.1e-05 Score=63.09 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=49.8
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHHcC-----CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQG-----TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-----~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+ ..+.+++ .+.|+++|.||+|+......++..+++.-.. ..++.+||++|.
T Consensus 85 a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 689999999987643221 2233333 2579999999999865443333333332111 123457999999
Q ss_pred chhHHHHHHHH
Q 025200 69 GTMKLSRLAKA 79 (256)
Q Consensus 69 g~~~L~~~i~~ 79 (256)
|++++.+.+.+
T Consensus 165 gv~e~~~~l~~ 175 (181)
T PLN00223 165 GLYEGLDWLSN 175 (181)
T ss_pred CHHHHHHHHHH
Confidence 99887766543
No 327
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.91 E-value=4.7e-05 Score=62.65 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=37.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.++||||||++++...... ....|..+.+. ..+.++. .+.++||||--
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3579999999999999999999974321 11112223332 2233332 46789999984
No 328
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.90 E-value=4.1e-05 Score=64.08 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC----CCCEEEEEecCCCCChHH-H-HHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD-R-NAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~----~k~~ilVlNK~DL~~~~~-~-~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++|+|+|+.++.+..+. .+.+... +.|+++|.||+||..... . .+..++.+..+...+++||++|.|
T Consensus 74 ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g 153 (215)
T cd04109 74 AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR 153 (215)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 6999999999987554322 1112211 136889999999974321 1 122222233456778899999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++++.+.+.+..
T Consensus 154 v~~lf~~l~~~l 165 (215)
T cd04109 154 VNLLFQQLAAEL 165 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999887765543
No 329
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.90 E-value=4.5e-05 Score=61.42 Aligned_cols=83 Identities=18% Similarity=0.019 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCCCCCC-HHHH-HhhC-----CCCEEEEEecCCCCChHHH---H-HHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMD-QWLG-----NRKRILVLNREDMISMADR---N-AWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~-~~l~-----~k~~ilVlNK~DL~~~~~~---~-~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++++|.|+.++.+..+ ..+. .+.. ..|+++|.||+|+.+.... . +-.++.++.+..++.+||++|.|
T Consensus 73 ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 73 AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGEN 152 (170)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 689999999987533321 1122 2222 1358999999999754321 1 11122233456778899999999
Q ss_pred hhHHHHHHHHHHhh
Q 025200 70 TMKLSRLAKALASD 83 (256)
Q Consensus 70 ~~~L~~~i~~l~~~ 83 (256)
++++.+.+.+++.+
T Consensus 153 v~~lf~~l~~~~~~ 166 (170)
T cd04108 153 VREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877766543
No 330
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.90 E-value=5.5e-05 Score=61.48 Aligned_cols=81 Identities=15% Similarity=0.006 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCCCCCCHH--HHHhh----CCCCEEEEEecCCCCChH------HHHHHHHHHHHcCC-eEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMA------DRNAWATYFAKQGT-KVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~~~------~~~~w~~~~~~~~~-~vi~~sa~~~ 67 (256)
+|++|+|.|+.++.+..+.. +...+ .+.|+++|.||+||.+.. ...+-.++.+..+. .++.+||++|
T Consensus 73 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 73 VDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 68999999998775543321 21111 357999999999996532 01122222233454 7889999999
Q ss_pred cchhHHHHHHHHHH
Q 025200 68 MGTMKLSRLAKALA 81 (256)
Q Consensus 68 ~g~~~L~~~i~~l~ 81 (256)
.|++++.+.+...+
T Consensus 153 ~~v~~~f~~l~~~~ 166 (187)
T cd04132 153 ENVEEVFDTAIEEA 166 (187)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998877665544
No 331
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.90 E-value=2.3e-05 Score=72.44 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCc------------------------------ccCCCCCceeeeEEEEe---C
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---G 141 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~ 141 (256)
...++|+++|.+++|||||+++|+..... ......|+|.+.....+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 34688999999999999999999842111 01124588988765544 2
Q ss_pred CcEEEEecCCC
Q 025200 142 KDLEFLDSPGI 152 (256)
Q Consensus 142 ~~~~l~DtPGi 152 (256)
..+.++||||.
T Consensus 85 ~~i~iiDtpGh 95 (426)
T TIGR00483 85 YEVTIVDCPGH 95 (426)
T ss_pred eEEEEEECCCH
Confidence 35889999994
No 332
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.89 E-value=4.2e-05 Score=63.19 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.++.+..+. .+...+ ...|+++|.||+|+.+... ..+..++.+..+..++.+|+++|.|++++
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~l 158 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEM 158 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHH
Confidence 5889999999877543221 111111 2468999999999976432 23333344455677889999999999998
Q ss_pred HHHHHHHH
Q 025200 74 SRLAKALA 81 (256)
Q Consensus 74 ~~~i~~l~ 81 (256)
.+.+....
T Consensus 159 f~~l~~~~ 166 (199)
T cd04110 159 FNCITELV 166 (199)
T ss_pred HHHHHHHH
Confidence 87765543
No 333
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.88 E-value=5.4e-05 Score=60.40 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|++++|.|+.++.+..+ +.+++ .+.|.++|.||+|+.+... .++..++.+..+.+++.+||+.+.|+
T Consensus 76 ad~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 76 AMGIILVYDITDEKSFEN--IRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred CCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 689999999987654322 22221 1468999999999974321 22333344455667899999999999
Q ss_pred hHHHHHHHH
Q 025200 71 MKLSRLAKA 79 (256)
Q Consensus 71 ~~L~~~i~~ 79 (256)
+++.+.+.+
T Consensus 154 ~~~~~~i~~ 162 (167)
T cd01867 154 EEAFFTLAK 162 (167)
T ss_pred HHHHHHHHH
Confidence 987766544
No 334
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.88 E-value=5.1e-05 Score=59.54 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.++.|+|..++.+..+. .+.+.. .+.|+++|.||+|+.+... ..+..++.+..+.+++.+||++|.|+++
T Consensus 73 ~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 73 GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHH
Confidence 5788999998765432221 111221 2579999999999975432 2233333444566788999999999998
Q ss_pred HHHHHH
Q 025200 73 LSRLAK 78 (256)
Q Consensus 73 L~~~i~ 78 (256)
+.+.+.
T Consensus 153 l~~~l~ 158 (162)
T cd04138 153 AFYTLV 158 (162)
T ss_pred HHHHHH
Confidence 776654
No 335
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.87 E-value=6.2e-05 Score=59.55 Aligned_cols=79 Identities=10% Similarity=-0.106 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|.|+.++.+..+. . +.+.. .+.|+++|.||+|+.+... ...-.++.+..+.+++.+||+++.|++
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 151 (164)
T smart00173 72 GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVD 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHH
Confidence 5889999999876443221 1 11111 1579999999999975321 112222233445678899999999999
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++.+.+.+
T Consensus 152 ~l~~~l~~ 159 (164)
T smart00173 152 EAFYDLVR 159 (164)
T ss_pred HHHHHHHH
Confidence 88776654
No 336
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.87 E-value=5.9e-05 Score=62.48 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=49.7
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh--------CCCCEEEEEecCCCCChHHHH--HHHHHHH-HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL--------GNRKRILVLNREDMISMADRN--AWATYFA-KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l--------~~k~~ilVlNK~DL~~~~~~~--~w~~~~~-~~~~~vi~~sa~~~~ 68 (256)
+|++|+|.|+.++.+..+- .+.+.+ .+.|+++|.||+|+....... ...++.. ..+..++.+||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 6999999999877544321 111111 246999999999996532211 1111112 235667899999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 161 ~v~~lf~~i~ 170 (198)
T cd04142 161 HILLLFKELL 170 (198)
T ss_pred CHHHHHHHHH
Confidence 9988766544
No 337
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.87 E-value=5.4e-05 Score=60.05 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----C-CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~-~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.+|+|.|+.++.+..+- .+...+ . +.|+++|.||+|+..... .++...+.+..+..++.+||++|.|+++
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 76 AVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 5789999999876554221 111111 1 478999999999975432 2233333444566788999999999988
Q ss_pred HHHHHH
Q 025200 73 LSRLAK 78 (256)
Q Consensus 73 L~~~i~ 78 (256)
+.+.+.
T Consensus 156 l~~~l~ 161 (165)
T cd01868 156 AFKQLL 161 (165)
T ss_pred HHHHHH
Confidence 877654
No 338
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.86 E-value=5.4e-05 Score=63.00 Aligned_cols=54 Identities=31% Similarity=0.474 Sum_probs=35.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
.|+++|.+|||||||++++....-. ....|.++.+. ..+.++. .+.++||+|--
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 6899999999999999999865431 11122222222 2344432 46899999974
No 339
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.86 E-value=9.8e-05 Score=59.02 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|++++|+|+.++.+.. .+..++ .+.|+++|.||+|+.+... .++-..+..+.+..++.+|++.+.|+
T Consensus 77 ~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 77 AAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred CCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 58999999998765432 222222 2568999999999974322 22233344555677889999999999
Q ss_pred hHHHHHHHH
Q 025200 71 MKLSRLAKA 79 (256)
Q Consensus 71 ~~L~~~i~~ 79 (256)
+++...+.+
T Consensus 155 ~~~~~~~~~ 163 (168)
T cd01866 155 EEAFINTAK 163 (168)
T ss_pred HHHHHHHHH
Confidence 887655443
No 340
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.86 E-value=1.4e-05 Score=66.78 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
+|+++|.+++|||||+++|....
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998643
No 341
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.85 E-value=7.4e-05 Score=61.17 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh--------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l--------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++|+|.|..++.+..+ ..+...+ .+.|+++|.||+|+.+...+ ..-.++.+..+..++.+||++|.|
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~ 150 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 589999999987654322 1121111 24699999999999643221 111222233456788999999999
Q ss_pred hhHHHHHHHHH
Q 025200 70 TMKLSRLAKAL 80 (256)
Q Consensus 70 ~~~L~~~i~~l 80 (256)
++++.+.+.+.
T Consensus 151 v~~l~~~l~~~ 161 (190)
T cd04144 151 VERAFYTLVRA 161 (190)
T ss_pred HHHHHHHHHHH
Confidence 99887766543
No 342
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.85 E-value=5.8e-05 Score=62.25 Aligned_cols=80 Identities=9% Similarity=-0.054 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCCh-HH--HHHHHHHHH-HcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWATYFA-KQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~-~~--~~~w~~~~~-~~~~~vi~~sa~~~~g 69 (256)
+|++++|+|+.++.+..+. .+.+.. .+.|+++|+||+|+.+. .. .....+... ..+..++.+||++|.|
T Consensus 71 ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 150 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN 150 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCC
Confidence 6899999999876443211 111111 25799999999999763 21 112222222 2235678899999999
Q ss_pred hhHHHHHHHHH
Q 025200 70 TMKLSRLAKAL 80 (256)
Q Consensus 70 ~~~L~~~i~~l 80 (256)
++++.+.+.+.
T Consensus 151 v~~l~~~l~~~ 161 (198)
T cd04147 151 VLEVFKELLRQ 161 (198)
T ss_pred HHHHHHHHHHH
Confidence 99988876553
No 343
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.85 E-value=2.7e-05 Score=73.01 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..++|+++|.+|+|||||+++|...
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 4789999999999999999999754
No 344
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.85 E-value=5e-05 Score=63.06 Aligned_cols=79 Identities=11% Similarity=-0.031 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|.|+..+.+..+. . +.+...+.|+++|.||+||.......+-.++.+..+..++.+||++|.|++++.+
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 5899999999877554221 1 2222235699999999998643211111223334456788999999999888776
Q ss_pred HHHH
Q 025200 76 LAKA 79 (256)
Q Consensus 76 ~i~~ 79 (256)
.+.+
T Consensus 148 ~l~~ 151 (200)
T smart00176 148 WLAR 151 (200)
T ss_pred HHHH
Confidence 6543
No 345
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.84 E-value=6.5e-05 Score=59.27 Aligned_cols=78 Identities=10% Similarity=-0.064 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|.|..++.+..+. .+...+ .+.|+++|.||+|+.+.... +.-.++.+..+.+++.+||++|.|++
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 73 GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 5889999999876543221 111111 25799999999999754321 11112223335678899999999998
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++.+.+.
T Consensus 153 ~l~~~l~ 159 (163)
T cd04136 153 EVFADLV 159 (163)
T ss_pred HHHHHHH
Confidence 8877654
No 346
>PRK09866 hypothetical protein; Provisional
Probab=97.84 E-value=6.7e-05 Score=71.59 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=43.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC----CcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~~ 154 (256)
.+.++++|.+|+|||||+|+|.|....++++.|.+|. ..++..+ ....+.||-|++.
T Consensus 69 ~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~dtvgfI~ 129 (741)
T PRK09866 69 EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIRHTPGQKEPVLHFSHVAPID 129 (741)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEEecCCcCceeeecCCccchH
Confidence 3789999999999999999999999999988887766 3333322 2245667777775
No 347
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.84 E-value=6.6e-05 Score=61.77 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhhCCCCEEEEEecCCCCCh-----HHHHHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMISM-----ADRNAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~~~-----~~~~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|.+|+|.|..++.+..+-. +.+...+.|+|+|.||+||... ++.+.|. ++.+..++.+||++|.|+
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a---~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA---ERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH---HHcCCEEEEecCCCCCCH
Confidence 68999999999886654321 2112235699999999999642 2333443 445677889999999999
Q ss_pred hHHHHHHHH
Q 025200 71 MKLSRLAKA 79 (256)
Q Consensus 71 ~~L~~~i~~ 79 (256)
+++.+.+.+
T Consensus 156 ~~~F~~l~~ 164 (189)
T cd04121 156 TESFTELAR 164 (189)
T ss_pred HHHHHHHHH
Confidence 887766554
No 348
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.84 E-value=5.1e-05 Score=58.95 Aligned_cols=77 Identities=18% Similarity=0.051 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCC-ChH-HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMI-SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~-~~~-~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+... ..+...+ .+.|.++|+||+|+. +.. ..++..++..+.+..++.+|++.+.|+++
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEE 152 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 589999999987543211 1111111 247999999999996 222 22334444445567889999999999988
Q ss_pred HHHHH
Q 025200 73 LSRLA 77 (256)
Q Consensus 73 L~~~i 77 (256)
+.+.+
T Consensus 153 ~~~~i 157 (159)
T cd00154 153 LFQSL 157 (159)
T ss_pred HHHHH
Confidence 87664
No 349
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.84 E-value=0.00016 Score=61.80 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
..++++||-.++||||++|+|.|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 4479999999999999999999864
No 350
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.83 E-value=5.6e-05 Score=61.60 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=48.8
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+.. ...+.+.+. +.|+++|.||.|+.......+..+++.. ....++.+||++|.
T Consensus 85 ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 68999999997654321 122333332 4799999999998643222222222211 11123457999999
Q ss_pred chhHHHHHHHH
Q 025200 69 GTMKLSRLAKA 79 (256)
Q Consensus 69 g~~~L~~~i~~ 79 (256)
|++++.+.+.+
T Consensus 165 gv~e~~~~l~~ 175 (182)
T PTZ00133 165 GLYEGLDWLSA 175 (182)
T ss_pred CHHHHHHHHHH
Confidence 99988877654
No 351
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.83 E-value=3.9e-05 Score=67.62 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=57.6
Q ss_pred cEEEEEEecCCCCCCCCH---------HHHHh---hCCCCEEEEEecCC-CCChHHHHHHHHHHHHcC-CeEE-EecCcC
Q 025200 2 DVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNRED-MISMADRNAWATYFAKQG-TKVI-FSNGQL 66 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~---------~l~~~---l~~k~~ilVlNK~D-L~~~~~~~~w~~~~~~~~-~~vi-~~sa~~ 66 (256)
-++++|+|+..- ..++| ++..+ +.+||.++|+||+| ..+.+..++..+++.+.. ..+. ++|+.+
T Consensus 239 ~vL~hviD~s~~-~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 239 RVLLHVIDLSPI-DGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred heeEEEEecCcc-cCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 478999998622 21222 22222 34799999999999 456677777888877543 2222 299999
Q ss_pred CcchhHHHHHHHHHHhhhh
Q 025200 67 GMGTMKLSRLAKALASDVN 85 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~~~~ 85 (256)
++|++.|...+.++.....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999988887766543
No 352
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.83 E-value=3.7e-05 Score=64.96 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
+|+++|.++.|||||+++|....
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 353
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.83 E-value=6.8e-05 Score=63.22 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCCCCCCHH--HHHhh----CCCCEEEEEecCCCCC------------------------hHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMIS------------------------MADRNAWAT 50 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~------------------------~~~~~~w~~ 50 (256)
+|++|+|.|+.++.+..+.. +..+. .+.|+|+|.||+||.+ .++...|.+
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~ 147 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence 68999999999875543321 22221 2468999999999975 122233433
Q ss_pred HHHHc-----------CCeEEEecCcCCcchhHHHHHHHHH
Q 025200 51 YFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 51 ~~~~~-----------~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
.+... ...++.+||++|.|++++...+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 148 RINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred HhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 22111 1357889999999999877665543
No 354
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.82 E-value=3.9e-05 Score=62.53 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=49.8
Q ss_pred CcEEEEEEecCCCCCCC--CHHHHHhh-----CCCCEEEEEecCCCCCh---HHHHHHHHHHHH-------------cCC
Q 025200 1 MDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISM---ADRNAWATYFAK-------------QGT 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL~~~---~~~~~w~~~~~~-------------~~~ 57 (256)
+|.+++|+|+.++.+.. ...+...+ .+.|+++|+||+|+... ++.+++....+. ...
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeE
Confidence 58899999998663221 12233333 25799999999999643 333333321110 113
Q ss_pred eEEEecCcCCcchhHHHHHHHH
Q 025200 58 KVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 58 ~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
.++.+||++|.|++++.+.+.+
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHh
Confidence 4678999999999888776543
No 355
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.82 E-value=3.2e-05 Score=59.79 Aligned_cols=77 Identities=23% Similarity=0.175 Sum_probs=47.3
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC-CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
|+++.|.|+..+.......+..... +.|+++|+||+|+..........+.+...+ ..++.+||+.+.|++++.+.++
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 3444444444333222222333333 679999999999987543344444444333 4688899999999988877653
No 356
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.81 E-value=6.2e-05 Score=62.76 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--C-CCEEEEEecCCCCCh--HHH----HHHHHHHHHcC---CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----NAWATYFAKQG---TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~--~~~----~~w~~~~~~~~---~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+..........++. + +++|+|+||+|+.+. +.. .+..+.++..+ .+++++||++|.
T Consensus 101 ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ 180 (208)
T cd04166 101 ADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGD 180 (208)
T ss_pred CCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCC
Confidence 69999999999876544433323222 3 456779999999742 211 22222333334 347899999998
Q ss_pred chhH
Q 025200 69 GTMK 72 (256)
Q Consensus 69 g~~~ 72 (256)
|+.+
T Consensus 181 ni~~ 184 (208)
T cd04166 181 NVVS 184 (208)
T ss_pred CCcc
Confidence 8754
No 357
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.81 E-value=8.5e-05 Score=59.14 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|.+|+|.|+.++.+..+ +..++ .+.|+++|.||+|+..... .++-.++.+..+..++.+||++|.|+
T Consensus 75 ~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 75 AAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred CCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 589999999988754322 22222 1468999999999965422 12222223344567888999999998
Q ss_pred hHHHHHH
Q 025200 71 MKLSRLA 77 (256)
Q Consensus 71 ~~L~~~i 77 (256)
+++...+
T Consensus 153 ~e~f~~l 159 (166)
T cd04122 153 EDAFLET 159 (166)
T ss_pred HHHHHHH
Confidence 8865433
No 358
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.80 E-value=7.2e-05 Score=62.25 Aligned_cols=57 Identities=30% Similarity=0.329 Sum_probs=36.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeC------C--cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG------K--DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~------~--~~~l~DtPGi~~ 154 (256)
++|+++|.++||||||++.+.+...... .+..|.+.....+... . .+.++||+|--.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 4799999999999999999997643211 1122322222223332 1 378999999743
No 359
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.80 E-value=6.2e-05 Score=59.32 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC----CCCEEEEEecCCCCChH-HHHH-HHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMA-DRNA-WATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~----~k~~ilVlNK~DL~~~~-~~~~-w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|.|+.++.+..+ ..+..+.. +.|+++|.||+|+.... ...+ .....+..+..++.+|++++.|+++
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 589999999987654322 11212111 37899999999995432 1222 2333344467788999999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 153 l~~~i~~ 159 (161)
T cd01861 153 LFRKIAS 159 (161)
T ss_pred HHHHHHH
Confidence 8877654
No 360
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.80 E-value=7.5e-05 Score=62.90 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|.|+.++.+..+ ..+...+ .+.|+|+|.||+|+.+...+ ++..++-...+..++.+||+++.|++
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 689999999998755331 1222211 25799999999999754321 11222223345678899999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+....
T Consensus 153 ~l~~~l~~~~ 162 (221)
T cd04148 153 ELLEGIVRQI 162 (221)
T ss_pred HHHHHHHHHH
Confidence 8887766544
No 361
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.79 E-value=8e-05 Score=59.18 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcC-CeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQG-TKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~-~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+..+.+... +.+...+ .+.|+++|.||+|+..... .+.-.+..+..+ ..++.+||++|.|++
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 589999999988755322 2222222 1468999999999975432 112222223333 357889999999998
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++.+.+.
T Consensus 156 ~~~~~l~ 162 (165)
T cd01864 156 EAFLLMA 162 (165)
T ss_pred HHHHHHH
Confidence 8776654
No 362
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.79 E-value=8.9e-05 Score=64.79 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=50.3
Q ss_pred CcEEEEEEecCCCCCCCCHH---------HH---HhhCCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHPL---------MD---QWLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~---------l~---~~l~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~ 66 (256)
++++++|+|...+.. ++|. ++ +-+.++|.++|+||+|+.+.++ +.+..++++ +..|+.+||++
T Consensus 275 ~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq--~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ--NPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC--CCcEEEeeecc
Confidence 578999999986632 2221 11 1234689999999999853222 133333332 24589999999
Q ss_pred CcchhHHHHHHHH
Q 025200 67 GMGTMKLSRLAKA 79 (256)
Q Consensus 67 ~~g~~~L~~~i~~ 79 (256)
++|.++|++.+++
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999998887764
No 363
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.78 E-value=3.3e-05 Score=64.95 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=39.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------------------------cccCCCCCceeeeEEEEe---CCcEE
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKDLE 145 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~------------------------------~~~~~~~g~T~~~~~~~~---~~~~~ 145 (256)
+|+++|.+++|||||+.+|..... .......|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 379999999999999999963210 001124688988754443 45689
Q ss_pred EEecCCCC
Q 025200 146 FLDSPGII 153 (256)
Q Consensus 146 l~DtPGi~ 153 (256)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 364
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.78 E-value=8.7e-05 Score=60.58 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=34.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~---~~~~l~DtPGi~~ 154 (256)
.+|+++|.+|||||||+|++....... ...|.+.... ..+.+. ..+.++||||...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChh
Confidence 378999999999999999998543211 1122111111 122222 2367899999753
No 365
>PTZ00369 Ras-like protein; Provisional
Probab=97.78 E-value=9.2e-05 Score=60.55 Aligned_cols=79 Identities=11% Similarity=-0.092 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC--CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|.|+.++.+..+. .+.+... +.|+++|.||+|+.+... ..+..++.+..+.+++.+||++|.|++
T Consensus 77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 77 GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVD 156 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 5899999999877542211 1111111 458999999999864321 112222233345678899999999998
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++.+.+.+
T Consensus 157 ~~~~~l~~ 164 (189)
T PTZ00369 157 EAFYELVR 164 (189)
T ss_pred HHHHHHHH
Confidence 87766543
No 366
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.78 E-value=6.7e-05 Score=74.10 Aligned_cols=79 Identities=22% Similarity=0.119 Sum_probs=56.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHH-HHcCCeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~-~~~~~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|+++.|+||.+. .++..+...+. ++|+++|+||+|+..+.......+.+ ++.|.+++.+|++++.|++++.+.+
T Consensus 86 aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I 163 (772)
T PRK09554 86 ADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAI 163 (772)
T ss_pred CCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 5999999999864 23333333332 68999999999997554333333333 3457789999999999999998887
Q ss_pred HHHH
Q 025200 78 KALA 81 (256)
Q Consensus 78 ~~l~ 81 (256)
.+..
T Consensus 164 ~~~~ 167 (772)
T PRK09554 164 DRHQ 167 (772)
T ss_pred HHhh
Confidence 7654
No 367
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.78 E-value=8.1e-05 Score=59.27 Aligned_cols=80 Identities=14% Similarity=0.009 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh--------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l--------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|.+++|.|..++.+..+ ..+...+ .+.|+++|.||+|+.+...+ .+-..+....+..++.+||++|.|
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~ 152 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHN 152 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCC
Confidence 588999999987765432 1121111 24699999999999753221 111222233345678899999999
Q ss_pred hhHHHHHHHHH
Q 025200 70 TMKLSRLAKAL 80 (256)
Q Consensus 70 ~~~L~~~i~~l 80 (256)
++++.+.+.++
T Consensus 153 v~~~f~~l~~~ 163 (165)
T cd04140 153 VQELFQELLNL 163 (165)
T ss_pred HHHHHHHHHhc
Confidence 99887766543
No 368
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.77 E-value=0.00011 Score=70.91 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH-hh-CCCCEEEEEecCCCCChHH---HHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~~~---~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.+|+|+|++.+.......... .. .+.|+++|+||+|+.+... .+++.+.+.-....++++||++|.|+++|.+
T Consensus 98 aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~ 177 (600)
T PRK05433 98 CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLE 177 (600)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHH
Confidence 68999999999876543322222 22 3679999999999864321 2233332211112478999999999999988
Q ss_pred HHHHHHhh
Q 025200 76 LAKALASD 83 (256)
Q Consensus 76 ~i~~l~~~ 83 (256)
.+.+..+.
T Consensus 178 ~I~~~lp~ 185 (600)
T PRK05433 178 AIVERIPP 185 (600)
T ss_pred HHHHhCcc
Confidence 88765543
No 369
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.77 E-value=7.8e-05 Score=59.11 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHhh-----CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~l-----~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|.|..++.+..+. .+ ..+. .+.|+++|.||+|+.+.... ..-.++-++.+.+++.+||++|.|++
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 73 GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVN 152 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 5889999998766443221 11 1121 25699999999999753211 11112223345678899999999999
Q ss_pred HHHHHHHH
Q 025200 72 KLSRLAKA 79 (256)
Q Consensus 72 ~L~~~i~~ 79 (256)
++...+.+
T Consensus 153 ~~~~~l~~ 160 (164)
T cd04175 153 EIFYDLVR 160 (164)
T ss_pred HHHHHHHH
Confidence 88776543
No 370
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.77 E-value=0.0001 Score=61.93 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=44.0
Q ss_pred CcEEEEEEecCCCCC-------CCCHHHHHh---hCCCCEEEEEecCCCCC----hHHHH----HHHHHHHHcC-----C
Q 025200 1 MDVVIEVRDARIPLS-------TTHPLMDQW---LGNRKRILVLNREDMIS----MADRN----AWATYFAKQG-----T 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~-------~~~~~l~~~---l~~k~~ilVlNK~DL~~----~~~~~----~w~~~~~~~~-----~ 57 (256)
+|++++|+|+..+.. ......... ++.+|+++|+||+|+.. +.... +..+.++..+ .
T Consensus 101 ~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 180 (219)
T cd01883 101 ADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDV 180 (219)
T ss_pred CCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCc
Confidence 689999999987521 111111111 23468889999999983 22222 2222344433 4
Q ss_pred eEEEecCcCCcchh
Q 025200 58 KVIFSNGQLGMGTM 71 (256)
Q Consensus 58 ~vi~~sa~~~~g~~ 71 (256)
+++++||++|.|++
T Consensus 181 ~ii~iSA~tg~gi~ 194 (219)
T cd01883 181 PFIPISGLTGDNLI 194 (219)
T ss_pred eEEEeecCcCCCCC
Confidence 58899999999875
No 371
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.77 E-value=7.2e-05 Score=60.08 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------------RNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~~-~v 59 (256)
+|++|+|.|..++.+..+. .+...+ .+.|.++|.||+||.+... .++-.++.++.+. .+
T Consensus 72 a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 151 (173)
T cd04130 72 TDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY 151 (173)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE
Confidence 6899999999988664332 222222 2579999999999975321 1112222233444 78
Q ss_pred EEecCcCCcchhHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i 77 (256)
+.+||++|.|++++.+.+
T Consensus 152 ~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 152 IECSALTQKNLKEVFDTA 169 (173)
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 899999999998887653
No 372
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.77 E-value=9.8e-05 Score=71.07 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHhh-CCCCEEEEEecCCCCCh--HH-HHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISM--AD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~--~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.+|+|+|+..+....... +.... .+.|+++|+||+|+.+. +. .+++.+.+.-...+++++||++|.|+++|.+
T Consensus 94 aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle 173 (595)
T TIGR01393 94 CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILE 173 (595)
T ss_pred CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHH
Confidence 68999999999876654332 22222 36799999999999642 21 2334333321112478999999999999988
Q ss_pred HHHHHHh
Q 025200 76 LAKALAS 82 (256)
Q Consensus 76 ~i~~l~~ 82 (256)
.+.+..+
T Consensus 174 ~I~~~lp 180 (595)
T TIGR01393 174 AIVKRVP 180 (595)
T ss_pred HHHHhCC
Confidence 8766554
No 373
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.77 E-value=9.2e-05 Score=70.21 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 025200 97 AVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~ 118 (256)
..+|+++|++|+|||||+++|.
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll 32 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVL 32 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999985
No 374
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.76 E-value=0.00011 Score=57.88 Aligned_cols=78 Identities=17% Similarity=0.063 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCCHH-H----HHhh--CCCCEEEEEecCCCCChH-HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-M----DQWL--GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l----~~~l--~~k~~ilVlNK~DL~~~~-~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+..... + .++. .+.|+++|.||+|+.... ..++-.++.+..+..++.+|+++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence 68999999998765432211 1 1111 256899999999997332 12222333344566788999999999988
Q ss_pred HHHHHH
Q 025200 73 LSRLAK 78 (256)
Q Consensus 73 L~~~i~ 78 (256)
+.+.+.
T Consensus 153 ~~~~~~ 158 (161)
T cd01863 153 AFEELV 158 (161)
T ss_pred HHHHHH
Confidence 876654
No 375
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.76 E-value=0.0001 Score=58.98 Aligned_cols=79 Identities=16% Similarity=0.021 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHH-HH-------------HHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD-RN-------------AWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~-~~-------------~w~~~~~~~~~-~v 59 (256)
+|++|+|.|+.++.+..+. .+... ..+.|+++|.||+|+.+... .. +-.++.++.+. .+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 5899999999877554322 12222 23689999999999975321 11 11112233443 67
Q ss_pred EEecCcCCcchhHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~ 79 (256)
+.+||+++.|++++.+.+..
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 150 LECSALTQEGVREVFEEAIR 169 (174)
T ss_pred EEecCCCCCCHHHHHHHHHH
Confidence 88999999999888776543
No 376
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.76 E-value=9.2e-05 Score=62.53 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=35.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~ 153 (256)
++|++||.+|||||||++++.+... .....|.+.-.. ..+.++. .+.++||+|--
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCcH
Confidence 5799999999999999999997543 222223221111 1223322 36789999964
No 377
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.75 E-value=9.4e-05 Score=58.77 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh---CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCC-cc
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG-MG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l---~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~-~g 69 (256)
+|++|+|.|+.++.+..+. .+.... .+.|+++|.||+|+..... .++..++-+..+..++.+|++++ .|
T Consensus 72 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~ 151 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDG 151 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchh
Confidence 6899999999887543221 112211 2579999999999864321 12222233344567788999998 48
Q ss_pred hhHHHHHHH
Q 025200 70 TMKLSRLAK 78 (256)
Q Consensus 70 ~~~L~~~i~ 78 (256)
++++.+.+.
T Consensus 152 v~~~f~~l~ 160 (165)
T cd04146 152 VHSVFHELC 160 (165)
T ss_pred HHHHHHHHH
Confidence 887766544
No 378
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.74 E-value=9.8e-05 Score=58.30 Aligned_cols=77 Identities=16% Similarity=-0.006 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHh---h--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~---l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.+++|+|+.++.+..+. .+... . .+.|+++|.||+|+.+... .++...+.+..+..++.+|++++.|+++
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 5899999999887654331 12111 1 2578999999999975432 2333444455567889999999999988
Q ss_pred HHHHH
Q 025200 73 LSRLA 77 (256)
Q Consensus 73 L~~~i 77 (256)
+.+.+
T Consensus 153 ~~~~~ 157 (161)
T cd04113 153 AFLKC 157 (161)
T ss_pred HHHHH
Confidence 77654
No 379
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.74 E-value=0.00014 Score=59.50 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=35.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi 152 (256)
.++|+++|.++||||||++++....-. ....|-+.-.. ..+.++. .+.++||+|-
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 578999999999999999999975431 11112111111 1223333 3789999996
No 380
>PRK10218 GTP-binding protein; Provisional
Probab=97.73 E-value=0.00013 Score=70.29 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=40.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc---------------cCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP---------------AAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~---------------~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|.+++|||||+++|....... .....|+|.......+ +..+.++||||...
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 469999999999999999999632211 1123577766543333 34689999999764
No 381
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.73 E-value=0.00012 Score=57.69 Aligned_cols=79 Identities=19% Similarity=0.062 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+... ..+...+ .+.|+++|.||+|+.+.. ......++.+..+..++.+|+++|.|+.+
T Consensus 74 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 74 AAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNE 153 (163)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 589999999987644322 1121111 245799999999987432 23344445555567789999999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 154 l~~~l~~ 160 (163)
T cd01860 154 LFTEIAK 160 (163)
T ss_pred HHHHHHH
Confidence 8776544
No 382
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.73 E-value=0.0002 Score=65.84 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH---hhCCCCEEEEEecCCCCChH--HH----HHHHHHHHHcC---CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMISMA--DR----NAWATYFAKQG---TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~---~l~~k~~ilVlNK~DL~~~~--~~----~~w~~~~~~~~---~~vi~~sa~~~~ 68 (256)
+|++++|+||+.++.....+... .++.+++++|+||+|+++.. .. +++.++++..+ .+++++||.+|.
T Consensus 104 aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ 183 (406)
T TIGR02034 104 ADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGD 183 (406)
T ss_pred CCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCC
Confidence 69999999999887765543322 33445688899999998532 11 22222333333 358899999999
Q ss_pred chhH
Q 025200 69 GTMK 72 (256)
Q Consensus 69 g~~~ 72 (256)
|+++
T Consensus 184 ni~~ 187 (406)
T TIGR02034 184 NVVS 187 (406)
T ss_pred CCcc
Confidence 8765
No 383
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.72 E-value=4.6e-05 Score=70.08 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..++|+++|.+|+|||||+++|.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe
Confidence 3688999999999999999999864
No 384
>PLN03108 Rab family protein; Provisional
Probab=97.72 E-value=0.00019 Score=59.92 Aligned_cols=81 Identities=11% Similarity=0.063 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCCH-H-HHHhh----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.+++|.|+..+.+..+. . +.... ...|+++|.||+||..... ..+-.++.++.+..++.+|++++.|+++
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5899999999877544321 1 11111 2468999999999965321 1222233344567788999999999988
Q ss_pred HH-HHHHHHH
Q 025200 73 LS-RLAKALA 81 (256)
Q Consensus 73 L~-~~i~~l~ 81 (256)
+. .+++.+.
T Consensus 159 ~f~~l~~~~~ 168 (210)
T PLN03108 159 AFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHH
Confidence 54 3444443
No 385
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.71 E-value=9.3e-05 Score=56.32 Aligned_cols=77 Identities=18% Similarity=-0.043 Sum_probs=52.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHH-----H--hhCCCCEEEEEecCCCCChHHHHHH---HHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMD-----Q--WLGNRKRILVLNREDMISMADRNAW---ATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~-----~--~l~~k~~ilVlNK~DL~~~~~~~~w---~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|.+++|+|+..+.+..+.... . ...++|.++|+||+|+.+....... .........+++.+|+..+.|+
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 5899999999987654433221 1 1126899999999999876544332 1222334567889999999998
Q ss_pred hHHHHHH
Q 025200 71 MKLSRLA 77 (256)
Q Consensus 71 ~~L~~~i 77 (256)
+++.+.+
T Consensus 149 ~~~~~~l 155 (157)
T cd00882 149 EELFEEL 155 (157)
T ss_pred HHHHHHH
Confidence 8777654
No 386
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.71 E-value=0.00011 Score=60.34 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=35.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||++++....-. ...+.-|.... ..+.++. .+.++||||--
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCch
Confidence 478999999999999999999865421 11111121111 1122332 37899999974
No 387
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.71 E-value=0.00011 Score=58.10 Aligned_cols=78 Identities=14% Similarity=-0.042 Sum_probs=49.7
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|.|..++.+..+. .+...+ .+.|+++|.||+|+.+.... .+...+-+..+..++.+||++|.|++
T Consensus 73 ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 73 GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 5899999999876543221 111111 25799999999999653221 11112222335677889999999998
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++...+.
T Consensus 153 ~l~~~l~ 159 (163)
T cd04176 153 ELFAEIV 159 (163)
T ss_pred HHHHHHH
Confidence 8776543
No 388
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.70 E-value=0.00012 Score=60.45 Aligned_cols=78 Identities=15% Similarity=-0.008 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCCh-------------------H--HHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM-------------------A--DRNAWATYFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~-------------------~--~~~~w~~~~~ 53 (256)
+|++|+|.|..++.+..+. .+...+ .+.|+++|.||+||.+. . ..++-.++-+
T Consensus 88 ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~ 167 (195)
T cd01873 88 SDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAK 167 (195)
T ss_pred CCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHH
Confidence 6899999999888665432 122222 25699999999999631 0 0122222234
Q ss_pred HcCCeEEEecCcCCcchhHHHHHHH
Q 025200 54 KQGTKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 54 ~~~~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+.+..++.+||++|.|++++.+.+.
T Consensus 168 ~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 168 ELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4566788899999999988766543
No 389
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.70 E-value=8.9e-05 Score=62.35 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=50.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHH----HhhCCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMD----QWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~----~~l~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|.+|+|.|..++.+..+. .+. +...+.|+++|.||+||.+... .+.+ ++.+..+..++.+||++|.|++++.
T Consensus 86 ~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164 (219)
T ss_pred ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHH
Confidence 5889999999877544321 111 1223579999999999964322 1222 3334455678889999999988877
Q ss_pred HHHH
Q 025200 75 RLAK 78 (256)
Q Consensus 75 ~~i~ 78 (256)
..+.
T Consensus 165 ~~l~ 168 (219)
T PLN03071 165 LYLA 168 (219)
T ss_pred HHHH
Confidence 6544
No 390
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.70 E-value=0.00014 Score=60.56 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=50.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHHH--HHHHHHHHH-cCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMADR--NAWATYFAK-QGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~-~~~~vi~~sa~~~~g~~ 71 (256)
+|.+|+|.|..++.+..+. .+...+ .+.|+++|.||+||.+..++ .+-.++-++ .+..++.+||++|.|++
T Consensus 73 ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~ 152 (202)
T cd04120 73 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVD 152 (202)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 6899999999987655332 111222 24689999999999643322 111112222 24567889999999998
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++.+.+.
T Consensus 153 e~F~~l~ 159 (202)
T cd04120 153 EIFLKLV 159 (202)
T ss_pred HHHHHHH
Confidence 8765544
No 391
>PRK12736 elongation factor Tu; Reviewed
Probab=97.70 E-value=0.0002 Score=65.59 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHHHH-----HHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~-----~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+|++.+......+...++. +.| .|+++||+|+++.++.. +..++++..+ .+++++||.+|
T Consensus 99 ~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 99 MDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 59999999999876655444444432 567 57889999998654322 2333444333 46889999987
Q ss_pred c--------chhHHHHHHHHHH
Q 025200 68 M--------GTMKLSRLAKALA 81 (256)
Q Consensus 68 ~--------g~~~L~~~i~~l~ 81 (256)
. +...|.+.+.+..
T Consensus 179 ~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 179 LEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred ccCCCcchhhHHHHHHHHHHhC
Confidence 3 3455666555543
No 392
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0002 Score=66.58 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=58.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC---------CeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~---------~~vi~~sa~~~~g 69 (256)
+|++|+|+|+.+....+-.+-.+.++ +-|+++.+||+|..+.. .......+.+.| ..++.+||++|.|
T Consensus 79 tDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 79 TDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred ccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 69999999999988876555444554 67999999999987432 222222233323 3467899999999
Q ss_pred hhHHHHHHHHHHhh
Q 025200 70 TMKLSRLAKALASD 83 (256)
Q Consensus 70 ~~~L~~~i~~l~~~ 83 (256)
+.+|+.++.-+++-
T Consensus 158 i~eLL~~ill~aev 171 (509)
T COG0532 158 IDELLELILLLAEV 171 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887655443
No 393
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.70 E-value=7.1e-05 Score=71.98 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH-hh-CCCCEEEEEecCCCCChHHHHHHHHHH-HHcCCeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~~~~~~w~~~~-~~~~~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|+++.|+|+.... ++..+.. .. .++|+++|+||+|+........-.+.+ +..+.+++.+||++|.|++++.+.+
T Consensus 73 aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 73 PDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred CCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 59999999998642 2333222 22 268999999999997543322212223 3346788999999999999998877
Q ss_pred HHH
Q 025200 78 KAL 80 (256)
Q Consensus 78 ~~l 80 (256)
.+.
T Consensus 151 ~~~ 153 (591)
T TIGR00437 151 RKA 153 (591)
T ss_pred HHH
Confidence 654
No 394
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.69 E-value=6.4e-05 Score=72.30 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=39.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcc--------c------CCCCCceeeeEEEEe-----C---CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~--------~------~~~~g~T~~~~~~~~-----~---~~~~l~DtPGi~~ 154 (256)
+|+++|.+++|||||+++|....... + ....|+|...+.+.+ + ..+.++||||...
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 68999999999999999998642211 1 122477776543332 2 2478999999975
No 395
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.69 E-value=0.00013 Score=59.30 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=35.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
++|+++|.++||||||++++....- .....| |.+-. ..+.++ -.+.++||+|--.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~ 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQED 61 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcc
Confidence 5799999999999999999996543 212222 21111 122332 2478999999754
No 396
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.69 E-value=0.00014 Score=57.88 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh----C-CCCEEEEEecCCCCChHH-HHHHHHHHHH-cCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD-RNAWATYFAK-QGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l----~-~k~~ilVlNK~DL~~~~~-~~~w~~~~~~-~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|++++.+..+ +.+...+ . +.|.++|.||+|+.+..+ .....+.+.+ ....++.+|+++|.|+++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 689999999987644321 1222212 2 468899999999975433 2233333433 235678899999999988
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+..
T Consensus 160 l~~~i~~ 166 (169)
T cd04114 160 LFLDLAC 166 (169)
T ss_pred HHHHHHH
Confidence 8776553
No 397
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.68 E-value=0.00016 Score=58.31 Aligned_cols=75 Identities=12% Similarity=-0.066 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhh--CCCCEEEEEecCCCCCh-----HHHHHHHHHHHHcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISM-----ADRNAWATYFAKQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~~~-----~~~~~w~~~~~~~~~~vi~~sa~~~~ 68 (256)
+|.+|.|.|..++.+..+.. +.+.. .+.|+++|.||+|+... ++..+|. ++.+..++.+||++|.
T Consensus 74 ~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a---~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 74 GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA---REFNCPFFETSAALRH 150 (172)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH---HHhCCEEEEEecCCCC
Confidence 58999999998887654422 22211 25799999999998543 2223333 3446678889999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 151 ~v~~~f~~l~ 160 (172)
T cd04141 151 YIDDAFHGLV 160 (172)
T ss_pred CHHHHHHHHH
Confidence 9988766544
No 398
>PLN03118 Rab family protein; Provisional
Probab=97.68 E-value=0.00014 Score=60.49 Aligned_cols=82 Identities=13% Similarity=-0.018 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCCHH--HHHhh------CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~--l~~~l------~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|++|+|+|+.++.+..+.. +...+ .+.|.++|.||+|+.....+ +...++....+..++.+||+++.|+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 58999999998765433221 21111 14589999999999754322 2233333445667788999999999
Q ss_pred hHHHHHHHHHHh
Q 025200 71 MKLSRLAKALAS 82 (256)
Q Consensus 71 ~~L~~~i~~l~~ 82 (256)
+++.+.+.....
T Consensus 166 ~~l~~~l~~~~~ 177 (211)
T PLN03118 166 EQCFEELALKIM 177 (211)
T ss_pred HHHHHHHHHHHH
Confidence 998877665443
No 399
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.67 E-value=7.7e-05 Score=61.93 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~ 120 (256)
++|+++|..++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 400
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.66 E-value=0.00021 Score=66.11 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=46.1
Q ss_pred CcEEEEEEecCC--CCCCCCHHHHHh---hCCCCEEEEEecCCCCCh--HHH----HHHHHHHHHcC-----CeEEEecC
Q 025200 1 MDVVIEVRDARI--PLSTTHPLMDQW---LGNRKRILVLNREDMISM--ADR----NAWATYFAKQG-----TKVIFSNG 64 (256)
Q Consensus 1 ~Dvvi~VvDar~--p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~~--~~~----~~w~~~~~~~~-----~~vi~~sa 64 (256)
+|++++|+|+.. +......+...+ ++.+++++|+||+|+.+. +.. ++..++++..+ .+++++||
T Consensus 108 aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA 187 (425)
T PRK12317 108 ADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSA 187 (425)
T ss_pred CCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeec
Confidence 699999999998 443333332222 223468899999999752 111 22333344333 35789999
Q ss_pred cCCcchhH
Q 025200 65 QLGMGTMK 72 (256)
Q Consensus 65 ~~~~g~~~ 72 (256)
++|.|+++
T Consensus 188 ~~g~gi~~ 195 (425)
T PRK12317 188 FEGDNVVK 195 (425)
T ss_pred ccCCCccc
Confidence 99999875
No 401
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.66 E-value=4.7e-05 Score=70.06 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=37.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc--------------c------------------CCCCCceeeeEEEEe---CC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP--------------A------------------APRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~--------------~------------------~~~~g~T~~~~~~~~---~~ 142 (256)
++|+++|++++|||||+++|....... . ...-|+|.+...... +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 478999999999999999996432110 0 012366777654443 34
Q ss_pred cEEEEecCCC
Q 025200 143 DLEFLDSPGI 152 (256)
Q Consensus 143 ~~~l~DtPGi 152 (256)
.+.++||||.
T Consensus 81 ~~~liDtPGh 90 (406)
T TIGR02034 81 KFIVADTPGH 90 (406)
T ss_pred EEEEEeCCCH
Confidence 5889999995
No 402
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.65 E-value=0.00019 Score=66.68 Aligned_cols=73 Identities=23% Similarity=0.187 Sum_probs=48.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+|++++|+|+..+.+..+. +...+ .++|+++|+||+|+.+. ....+ .+..+.+++.+|+++ .|++++.+.+.
T Consensus 283 aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 283 ADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred CCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec-CCHHHHHHHHH
Confidence 6999999999988764433 33333 26899999999999754 22222 223345677889987 47666655544
Q ss_pred H
Q 025200 79 A 79 (256)
Q Consensus 79 ~ 79 (256)
+
T Consensus 357 ~ 357 (442)
T TIGR00450 357 Q 357 (442)
T ss_pred H
Confidence 3
No 403
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.65 E-value=0.00021 Score=58.24 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhhC-CCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWLG-NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l~-~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|.|+.++.+..+. . +..+.. ..|.++|.||+|+.+...+ ..-..+.+..+.+++.+||+++.|+++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 6899999999876543221 1 111112 4689999999999743211 111122233456788999999999988
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 153 ~f~~l~~~~ 161 (188)
T cd04125 153 AFILLVKLI 161 (188)
T ss_pred HHHHHHHHH
Confidence 777655443
No 404
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.64 E-value=6.8e-05 Score=60.76 Aligned_cols=57 Identities=25% Similarity=0.473 Sum_probs=39.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
.+..+|+++|.+|+||||+++.|.......+.+.-|.. ...+.. +..+.++|.+|=.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQE 69 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSSG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEeccccc
Confidence 35789999999999999999999976544433333322 233333 3368999999963
No 405
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.64 E-value=0.00017 Score=58.30 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=50.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHHH-------------HHHHHHH-HHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR-------------NAWATYF-AKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~-------------~~w~~~~-~~~~-~~v 59 (256)
+|++|+|.|..++.+..+. .+...+ .+.|+++|.||+|+.+.... .+..+.+ ++.+ ..+
T Consensus 73 a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~ 152 (175)
T cd01874 73 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY 152 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE
Confidence 5899999999887655432 132222 25799999999998654221 1111112 2233 467
Q ss_pred EEecCcCCcchhHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~ 78 (256)
+.+||++|.|++++.+.+.
T Consensus 153 ~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 153 VECSALTQKGLKNVFDEAI 171 (175)
T ss_pred EEecCCCCCCHHHHHHHHH
Confidence 8899999999988776544
No 406
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.64 E-value=0.0002 Score=60.83 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=35.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeC---CcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~---~~~~l~DtPGi~ 153 (256)
.++|+++|.++||||||++++.+..-. ....|.+.... ..+.++ -.+.|+||+|--
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSP 72 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCch
Confidence 578999999999999999999865321 11122111111 112222 247899999953
No 407
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.63 E-value=0.00023 Score=65.87 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred CcEEEEEEecCCCCCCCCHH------HHHhhCCCCEEEEEecCCCCC--hHH----HHHHHHHHHHcC-----CeEEEec
Q 025200 1 MDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMIS--MAD----RNAWATYFAKQG-----TKVIFSN 63 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~~--~~~----~~~w~~~~~~~~-----~~vi~~s 63 (256)
+|++++|+|++.+.+...+. +.+.++.+++++|+||+|+++ ++. .+++.+++++.+ .+++.+|
T Consensus 109 aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iS 188 (426)
T TIGR00483 109 ADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPIS 188 (426)
T ss_pred CCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEee
Confidence 69999999999874332222 122233457889999999974 322 234444555444 4578899
Q ss_pred CcCCcchhH
Q 025200 64 GQLGMGTMK 72 (256)
Q Consensus 64 a~~~~g~~~ 72 (256)
|++|.|+.+
T Consensus 189 A~~g~ni~~ 197 (426)
T TIGR00483 189 AWNGDNVIK 197 (426)
T ss_pred ccccccccc
Confidence 999998864
No 408
>PLN00023 GTP-binding protein; Provisional
Probab=97.63 E-value=0.0002 Score=63.62 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=39.5
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC----------------cEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK----------------DLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~----------------~~~l~DtPGi~ 153 (256)
...++|+++|..+||||||++.+.+..... ..+.-|.+.....+.++. .+.|+||+|--
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 346899999999999999999999754321 122334443333333321 27899999964
No 409
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.62 E-value=0.00021 Score=67.08 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=48.9
Q ss_pred CcEEEEEEecCCCCCCCCH---HHHHhhCCCCEEEEEecCCCCCh--HHHHHHHH----HHHHc----CCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISM--ADRNAWAT----YFAKQ----GTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~---~l~~~l~~k~~ilVlNK~DL~~~--~~~~~w~~----~~~~~----~~~vi~~sa~~~ 67 (256)
+|++++|+||+.++..... .+...++.+++|+|+||+|+++. +...+..+ ++... ..+++++|+++|
T Consensus 131 aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g 210 (474)
T PRK05124 131 CDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEG 210 (474)
T ss_pred CCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecC
Confidence 6999999999987655333 23334445678999999999842 22222222 22222 256889999999
Q ss_pred cchhHHH
Q 025200 68 MGTMKLS 74 (256)
Q Consensus 68 ~g~~~L~ 74 (256)
.|+..+.
T Consensus 211 ~ni~~~~ 217 (474)
T PRK05124 211 DNVVSQS 217 (474)
T ss_pred CCccccc
Confidence 9886543
No 410
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.62 E-value=0.00018 Score=58.06 Aligned_cols=78 Identities=18% Similarity=0.035 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHH-HHHH-------------HHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD-RNAW-------------ATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~-~~~w-------------~~~~~~~~-~~v 59 (256)
+|++|+|.|..++.+..+- .+...+ .+.|+++|.||+||.+... .+.+ .++.++.+ ..+
T Consensus 73 ~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (174)
T cd01871 73 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 152 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 6899999999887654432 122222 2579999999999964321 1111 11222334 367
Q ss_pred EEecCcCCcchhHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~ 78 (256)
+.+||++|.|++++.+.+.
T Consensus 153 ~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 153 LECSALTQKGLKTVFDEAI 171 (174)
T ss_pred EEecccccCCHHHHHHHHH
Confidence 7899999999988876543
No 411
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.60 E-value=0.00029 Score=56.38 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCCCCCCCH------HHHHhhCCCCEEEEEecCCCCChHHHHH-----------HH---HHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRNA-----------WA---TYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL~~~~~~~~-----------w~---~~~~~~~-~~v 59 (256)
+|+++.|.|...+.+..+. .+.+...+.|+++|.||+|+.+.....+ |. ++-+..+ ..+
T Consensus 73 ~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (175)
T cd01870 73 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE
Confidence 5889999998866432221 1111223689999999999875432110 11 1111223 367
Q ss_pred EEecCcCCcchhHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~ 79 (256)
+.+||+.|.|++++.+.+.+
T Consensus 153 ~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 153 MECSAKTKEGVREVFEMATR 172 (175)
T ss_pred EEeccccCcCHHHHHHHHHH
Confidence 88999999999988776653
No 412
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.60 E-value=0.00025 Score=57.66 Aligned_cols=76 Identities=14% Similarity=-0.011 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChH---------------HHHHHHHHHHHcCC-e
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA---------------DRNAWATYFAKQGT-K 58 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~---------------~~~~w~~~~~~~~~-~ 58 (256)
+|.+|.|.|..++.+..+- .+...+ .+-|+++|.||+||.+.. +..+|. ++.+. .
T Consensus 73 a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a---~~~~~~~ 149 (176)
T cd04133 73 ADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR---KQIGAAA 149 (176)
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH---HHcCCCE
Confidence 5899999999888776442 222222 256899999999995431 223333 33354 4
Q ss_pred EEEecCcCCcchhHHHHHHHH
Q 025200 59 VIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 59 vi~~sa~~~~g~~~L~~~i~~ 79 (256)
++.+||++|.|++++.+.+.+
T Consensus 150 ~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 150 YIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred EEECCCCcccCHHHHHHHHHH
Confidence 788999999999888766554
No 413
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.60 E-value=0.00024 Score=56.51 Aligned_cols=55 Identities=31% Similarity=0.355 Sum_probs=34.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
++|+++|.+|||||||++++....-... .+..+. ....+.++. .+.+.||+|--.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~--~~~~i~~~~~~~~l~i~D~~g~~~ 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGR--FKKEVLVDGQSHLLLIRDEGGAPD 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccc--eEEEEEECCEEEEEEEEECCCCCc
Confidence 3689999999999999998875432111 111111 112233332 378899999853
No 414
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.60 E-value=0.00015 Score=68.80 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 025200 98 VRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~ 118 (256)
.+|+++|++|+|||||.++|.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll 31 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLL 31 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 415
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.59 E-value=0.00023 Score=61.03 Aligned_cols=81 Identities=15% Similarity=-0.010 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHh-------------hCCCCEEEEEecCCCCChH--HHHHHHHHHHH-cCCeEEEe
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQW-------------LGNRKRILVLNREDMISMA--DRNAWATYFAK-QGTKVIFS 62 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~-------------l~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~-~~~~vi~~ 62 (256)
+|++|+|.|..++.+..+- .+ .++ ..+.|+|+|.||+|+.... ..++..+++.. .+..++.+
T Consensus 72 ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ev 151 (247)
T cd04143 72 GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEV 151 (247)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEE
Confidence 5899999999876443221 11 111 1257999999999997422 12233333332 23568899
Q ss_pred cCcCCcchhHHHHHHHHHH
Q 025200 63 NGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 63 sa~~~~g~~~L~~~i~~l~ 81 (256)
||+++.|++++.+.+..+.
T Consensus 152 SAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 152 SAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999888776654
No 416
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.59 E-value=0.00024 Score=56.86 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=49.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHh----h--CCCCEEEEEecCCCCChHHH-HHHH-HHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQW----L--GNRKRILVLNREDMISMADR-NAWA-TYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~----l--~~k~~ilVlNK~DL~~~~~~-~~w~-~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.+|.+..+. .+... . .+.|+++|.||+|+....+. .... ++.+.....++.+||+++.+..
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEND 155 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCC
Confidence 5899999999877654332 12111 1 24799999999998644321 1122 2223334567889999955444
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
.+.+.+..++.
T Consensus 156 ~i~~~f~~l~~ 166 (170)
T cd04115 156 HVEAIFMTLAH 166 (170)
T ss_pred CHHHHHHHHHH
Confidence 55555555543
No 417
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.59 E-value=0.0001 Score=58.96 Aligned_cols=76 Identities=11% Similarity=-0.052 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh---CCCCEEEEEecCCCCChHHHHHHHHH-----H-HHcCCeEEEecCcC---
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMISMADRNAWATY-----F-AKQGTKVIFSNGQL--- 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l---~~k~~ilVlNK~DL~~~~~~~~w~~~-----~-~~~~~~vi~~sa~~--- 66 (256)
+|++++|+|+.++.+..+ ..+.+++ .+.|+++|.||+|+..........++ + ++.+..++.+||++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGS 147 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCC
Confidence 689999999987753221 1223333 36799999999998654333322222 2 22344556677776
Q ss_pred ---CcchhHHHHH
Q 025200 67 ---GMGTMKLSRL 76 (256)
Q Consensus 67 ---~~g~~~L~~~ 76 (256)
++|++++.+.
T Consensus 148 ~~~~~~v~~~~~~ 160 (164)
T cd04162 148 PSRMEAVKDLLSQ 160 (164)
T ss_pred hhHHHHHHHHHHH
Confidence 6666665543
No 418
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.59 E-value=0.00013 Score=58.20 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHHcC-----CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQG-----TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-----~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+.+..+ ..+...+ .+.|+++++||+|+......++..+.+.-.. ..++.+||++|.
T Consensus 82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 589999999986532211 1122222 2579999999999976544444444332111 246689999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 162 gi~~~~~~l 170 (173)
T cd04155 162 GLQEGMNWV 170 (173)
T ss_pred CHHHHHHHH
Confidence 998877654
No 419
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.59 E-value=0.00025 Score=68.07 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCC--hHHHHHHHHHHH----HcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS--MADRNAWATYFA----KQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~--~~~~~~w~~~~~----~~~--~~vi~~sa~~~~g~ 70 (256)
+|++|+|+|+.++......+..... .+.|+++++||+|+.. .+....+...+. ..+ ..++.+||++|.|+
T Consensus 159 aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 159 TDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 5899999999976554433333333 2679999999999953 333333332111 111 35788999999999
Q ss_pred hHHHHHHHH
Q 025200 71 MKLSRLAKA 79 (256)
Q Consensus 71 ~~L~~~i~~ 79 (256)
++|.+.+..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 998887643
No 420
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.59 E-value=8.6e-05 Score=60.19 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=50.0
Q ss_pred CcEEEEEEecCCCCCC--CCHHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHH------HcCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~--~~~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~------~~~~~vi~~sa~~~ 67 (256)
+|.||+|+|+.++..- ....+.+++. +.|+++++||.|+.+.....+..+++. +....++.+|+.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 5899999999876321 1122333333 579999999999865433344444332 12245677899999
Q ss_pred cchhHHHHHHH
Q 025200 68 MGTMKLSRLAK 78 (256)
Q Consensus 68 ~g~~~L~~~i~ 78 (256)
.|+.+..+.+.
T Consensus 162 ~Gv~e~l~WL~ 172 (175)
T PF00025_consen 162 EGVDEGLEWLI 172 (175)
T ss_dssp BTHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99877665543
No 421
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.58 E-value=0.00022 Score=58.38 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=51.5
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHHHH--------------HHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------------AWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~~--------------~w~~~~~~~~-~~v 59 (256)
+|++|+|.|..++.+..+. .+...+ .+.|+++|.||+||....... +-.+..++.+ ..+
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 5899999998887654322 122222 257999999999997543211 1111222333 467
Q ss_pred EEecCcCCcchhHHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~ 81 (256)
+.+||++|.|++++.+.+.+..
T Consensus 152 ~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred EEccCCcCCCHHHHHHHHHHHH
Confidence 8899999999998876665443
No 422
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.56 E-value=0.00031 Score=59.68 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHh----hCCCCEEEEEecCCCCCh------------H--HHHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISM------------A--DRNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~----l~~k~~ilVlNK~DL~~~------------~--~~~~w~~~~~~~~~-~v 59 (256)
+|++|+|.|..++.+..+ ..+... ..+.|+|+|.||+||.+. . ..++-.++-++.+. .+
T Consensus 85 ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 85 SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 689999999998876543 122222 235789999999998531 0 11223333344565 57
Q ss_pred EEecCcCCc-chhHHHHHHHH
Q 025200 60 IFSNGQLGM-GTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~-g~~~L~~~i~~ 79 (256)
+.+||++|. |++++...+..
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHH
Confidence 789999997 78887766544
No 423
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.56 E-value=0.00027 Score=67.83 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=54.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH-----------------H-HHHH-------HHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-----------------R-NAWA-------TYFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~-----------------~-~~w~-------~~~~ 53 (256)
+|++++|+|+++.......+...++. +.|.++|+||+|+.+... + ..+. ..+.
T Consensus 93 aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~ 172 (590)
T TIGR00491 93 ADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLH 172 (590)
T ss_pred CCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 69999999999865544443333333 689999999999975210 0 0110 0111
Q ss_pred Hc---------------CCeEEEecCcCCcchhHHHHHHHHHHh
Q 025200 54 KQ---------------GTKVIFSNGQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 54 ~~---------------~~~vi~~sa~~~~g~~~L~~~i~~l~~ 82 (256)
+. ..+++++||++|.|+++|...+..+..
T Consensus 173 ~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 173 EEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 11 146889999999999999987765443
No 424
>CHL00071 tufA elongation factor Tu
Probab=97.56 E-value=0.00035 Score=64.36 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=45.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHHHH-----HHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~-----~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+||+.++.....+...++. +.| +|+++||+|+++.++.. +..++++..+ .+++++|+.+|
T Consensus 99 ~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g 178 (409)
T CHL00071 99 MDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLA 178 (409)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhc
Confidence 69999999999876654444444432 567 66889999999755422 3333444433 46788898877
Q ss_pred c
Q 025200 68 M 68 (256)
Q Consensus 68 ~ 68 (256)
.
T Consensus 179 ~ 179 (409)
T CHL00071 179 L 179 (409)
T ss_pred c
Confidence 5
No 425
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.56 E-value=0.00032 Score=56.02 Aligned_cols=78 Identities=14% Similarity=-0.036 Sum_probs=48.9
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHHH--------------HHHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR--------------NAWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~--------------~~w~~~~~~~~-~~v 59 (256)
+|+++.|.|..++-+..+. .+... ..+.|+++|.||+|+.+.... ++-.++.++.+ ..+
T Consensus 72 ~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY 151 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 5889999999877553221 12222 236899999999998643211 01111222334 357
Q ss_pred EEecCcCCcchhHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~ 78 (256)
+.+||++|.|++++.+.+.
T Consensus 152 ~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 152 VECSALTQKGLKTVFDEAI 170 (174)
T ss_pred EEecCCcCCCHHHHHHHHH
Confidence 7899999999988876543
No 426
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.55 E-value=0.00029 Score=57.55 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCCh-----------H---HHHHHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM-----------A---DRNAWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~-----------~---~~~~w~~~~~~~~-~~v 59 (256)
+|++|+|.|..++.+..+- .+...+ .+.|+++|.||+||.+. . ..++-.++-++.+ ..+
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 6899999999888665431 222222 25799999999998531 0 0122222333445 368
Q ss_pred EEecCcCCcc-hhHHHHHHH
Q 025200 60 IFSNGQLGMG-TMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g-~~~L~~~i~ 78 (256)
+.+||++|.| ++++...+.
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~ 176 (182)
T cd04172 157 IECSALQSENSVRDIFHVAT 176 (182)
T ss_pred EECCcCCCCCCHHHHHHHHH
Confidence 8899999998 887765543
No 427
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.55 E-value=0.00034 Score=56.81 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=50.1
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCCh-----------H---HHHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM-----------A---DRNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~-----------~---~~~~w~~~~~~~~~-~v 59 (256)
+|++|+|.|..++.+..+- .+...+ .+.|+++|.||+||.+. . ..++-.++-++.+. .+
T Consensus 73 a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~ 152 (178)
T cd04131 73 SDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIY 152 (178)
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEE
Confidence 6899999999888665431 222222 35799999999998531 0 01122222234453 67
Q ss_pred EEecCcCCcc-hhHHHHHHHH
Q 025200 60 IFSNGQLGMG-TMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g-~~~L~~~i~~ 79 (256)
+.+||++|.+ ++++...+..
T Consensus 153 ~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred EECccCcCCcCHHHHHHHHHH
Confidence 8899999984 8877665443
No 428
>PRK13351 elongation factor G; Reviewed
Probab=97.55 E-value=0.00015 Score=71.17 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc--ccCC---------------CCCceeeeEE--EEe-CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAP---------------RPGVTRVLKW--VRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~--~~~~---------------~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 154 (256)
..+|+++|..|+|||||+++|...... ..+. ..|.|..... +.. +..+.++||||...
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 357999999999999999999853211 0110 1244433221 122 44689999999864
No 429
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.55 E-value=0.00038 Score=68.25 Aligned_cols=81 Identities=20% Similarity=0.142 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCCh--HHHHHHHHHH----HHcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~--~~~~~w~~~~----~~~~--~~vi~~sa~~~~g~ 70 (256)
+|++|+|+||.++......+....+. +.|+|+|+||+|+.+. +.+.+++..+ ...+ .+++++||++|.|+
T Consensus 319 aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 69999999998765543333333332 6899999999999753 2233332211 1122 46889999999999
Q ss_pred hHHHHHHHHHH
Q 025200 71 MKLSRLAKALA 81 (256)
Q Consensus 71 ~~L~~~i~~l~ 81 (256)
++|.+.+..+.
T Consensus 399 deLle~I~~l~ 409 (742)
T CHL00189 399 DKLLETILLLA 409 (742)
T ss_pred HHHHHhhhhhh
Confidence 99988776553
No 430
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.55 E-value=0.00034 Score=58.46 Aligned_cols=81 Identities=19% Similarity=0.045 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCCH-H-HH---HhhC--CCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-L-MD---QWLG--NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~-l~---~~l~--~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|.|..++.+..+. . +. +... ..|+++|.||+|+.+...+ ++-.++-+..+..++.+|+++|.|++
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 5899999999887543221 1 11 1111 2457889999999753221 11112223345678899999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 156 e~f~~l~~~~ 165 (211)
T cd04111 156 EAFELLTQEI 165 (211)
T ss_pred HHHHHHHHHH
Confidence 9888776544
No 431
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.55 E-value=0.0003 Score=55.02 Aligned_cols=78 Identities=14% Similarity=-0.000 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCC-HH----HHHhhC--CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH-PL----MDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~----l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|+++.|+|...+.+..+ .. +.+... ..|+++|+||+|+.+... .+.-..+..+.+.+++.+|++.+.|++
T Consensus 71 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHH
Confidence 589999999877643221 11 111222 589999999999976322 122223334445678899999999998
Q ss_pred HHHHHHH
Q 025200 72 KLSRLAK 78 (256)
Q Consensus 72 ~L~~~i~ 78 (256)
++.+.+.
T Consensus 151 ~l~~~l~ 157 (160)
T cd00876 151 EVFKLLV 157 (160)
T ss_pred HHHHHHH
Confidence 8877654
No 432
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.54 E-value=0.00075 Score=61.85 Aligned_cols=68 Identities=18% Similarity=0.059 Sum_probs=43.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEE-EEEecCCCCChHHHH-----HHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~~~~-----~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+||+.+......+...++. +.|.+ +|+||+|+++.++.. +..++++..+ .+++++|+.++
T Consensus 99 ~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 99 MDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 59999999999865544333333332 56655 689999998754321 2333444333 56888999876
Q ss_pred c
Q 025200 68 M 68 (256)
Q Consensus 68 ~ 68 (256)
.
T Consensus 179 ~ 179 (394)
T TIGR00485 179 L 179 (394)
T ss_pred c
Confidence 4
No 433
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.54 E-value=0.00018 Score=67.02 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc------------------------------ccCCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|..++|||||+.+|...... ......|+|.+...... +.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4689999999999999999999741100 01123488877755443 33
Q ss_pred cEEEEecCCCC
Q 025200 143 DLEFLDSPGII 153 (256)
Q Consensus 143 ~~~l~DtPGi~ 153 (256)
.+.++||||-.
T Consensus 86 ~i~lIDtPGh~ 96 (446)
T PTZ00141 86 YFTIIDAPGHR 96 (446)
T ss_pred EEEEEECCChH
Confidence 58899999953
No 434
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.53 E-value=0.00038 Score=67.66 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH---hhCCCCEEEEEecCCCCC--hHHHHH----HHHHHHHcC---CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMIS--MADRNA----WATYFAKQG---TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~---~l~~k~~ilVlNK~DL~~--~~~~~~----w~~~~~~~~---~~vi~~sa~~~~ 68 (256)
+|++++|+||..+......+... .++.+++|+|+||+|+++ ++..++ ..+++++.+ .+++++||++|.
T Consensus 128 aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ 207 (632)
T PRK05506 128 ADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGD 207 (632)
T ss_pred CCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCC
Confidence 69999999999887665443322 233467888999999985 222222 222333333 358899999999
Q ss_pred chhH
Q 025200 69 GTMK 72 (256)
Q Consensus 69 g~~~ 72 (256)
|+.+
T Consensus 208 ni~~ 211 (632)
T PRK05506 208 NVVT 211 (632)
T ss_pred Cccc
Confidence 8763
No 435
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.52 E-value=0.00033 Score=69.18 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCCh--HHHHHHHHHH----HHcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~~----~~~~--~~vi~~sa~~~~g~ 70 (256)
+|++|+|+|+.+.......+..... .+.|+|+++||+|+... +.+..++..+ ...+ .+++++||++|.|+
T Consensus 361 aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 361 TDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 5999999999987554433333333 26899999999999542 2222222211 1122 46889999999999
Q ss_pred hHHHHHHHHH
Q 025200 71 MKLSRLAKAL 80 (256)
Q Consensus 71 ~~L~~~i~~l 80 (256)
++|.+.+...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9998877543
No 436
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.51 E-value=0.00027 Score=61.61 Aligned_cols=86 Identities=22% Similarity=0.226 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC---CCCEEEEEecCCCCChHH-----------------HHHHHHHHHHc-----
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATYFAKQ----- 55 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~---~k~~ilVlNK~DL~~~~~-----------------~~~w~~~~~~~----- 55 (256)
+|+|+.|+||.++-...+|.+...+. +-|-|+|+||+|...... ..+|.+.|...
T Consensus 156 AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~ 235 (379)
T KOG1423|consen 156 ADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEK 235 (379)
T ss_pred CCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccc
Confidence 69999999998766666776555443 679999999999764431 12455544211
Q ss_pred ---------CCeEEEecCcCCcchhHHHHHHHHHHhhhhh
Q 025200 56 ---------GTKVIFSNGQLGMGTMKLSRLAKALASDVNV 86 (256)
Q Consensus 56 ---------~~~vi~~sa~~~~g~~~L~~~i~~l~~~~~~ 86 (256)
...++++||.+|.|++++++.+...++....
T Consensus 236 ~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 236 WRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred cccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 1358899999999999999988766554433
No 437
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.50 E-value=0.00059 Score=69.16 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH------------------HHHH-------HHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------------------RNAW-------ATYFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~------------------~~~w-------~~~~~ 53 (256)
+|++++|+|+..++.....+....+. +.|+++|+||+|+.+... .++. ...+.
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~ 629 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLY 629 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHH
Confidence 69999999999876554444333332 679999999999975211 0111 00112
Q ss_pred Hc---------------CCeEEEecCcCCcchhHHHHHHHHHHh
Q 025200 54 KQ---------------GTKVIFSNGQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 54 ~~---------------~~~vi~~sa~~~~g~~~L~~~i~~l~~ 82 (256)
+. ...++.+||++|.|+++|...+..+.+
T Consensus 630 ~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 630 ELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 22 146788999999999999987765543
No 438
>PLN03110 Rab GTPase; Provisional
Probab=97.50 E-value=0.00053 Score=57.44 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--------CCCCEEEEEecCCCCChHHH-HHHHHHH-HHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL~~~~~~-~~w~~~~-~~~~~~vi~~sa~~~~g~ 70 (256)
+|.+|+|.|.+++.+..+ +..++ .+.|+++|.||+||...... .+....+ ...+..++.+||++|.|+
T Consensus 85 ~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 85 AVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred CCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 588999999987755322 22222 14789999999998643221 1112222 234677899999999999
Q ss_pred hHHHHHHHHHH
Q 025200 71 MKLSRLAKALA 81 (256)
Q Consensus 71 ~~L~~~i~~l~ 81 (256)
+++.+.+....
T Consensus 163 ~~lf~~l~~~i 173 (216)
T PLN03110 163 EKAFQTILLEI 173 (216)
T ss_pred HHHHHHHHHHH
Confidence 98877765443
No 439
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.49 E-value=0.00041 Score=54.93 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=38.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-CCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|.++|-++||||||+-+......-...+. -|+--.+..+.++. ++.++||.|--.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 58999999999999999999986433222221 23333333444533 478999999854
No 440
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.49 E-value=0.00018 Score=61.02 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=36.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--C--CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--G--KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~--~~~~l~DtPGi~~ 154 (256)
||+++|..++||||..+.+..+-...-...-|.|.++...++ . -.+.++|+||-..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 589999999999999999997654443445577777765444 2 2589999999964
No 441
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.47 E-value=0.00047 Score=61.60 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=49.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHh-hCCCCEEEEEecCCCCChHHHHHHHHHHHH-----------cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMISMADRNAWATYFAK-----------QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~-l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----------~~~~vi~~sa~~~~ 68 (256)
+|++++|.+ |.+..+...... +-+..-++|+||+|+.+..........+++ ...+++++||.++.
T Consensus 170 aD~vlvv~~---p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~ 246 (332)
T PRK09435 170 VDFFLLLQL---PGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE 246 (332)
T ss_pred CCEEEEEec---CCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC
Confidence 689999965 333322221111 112334999999999876543333333321 11578999999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|+++|.+.+.++.+
T Consensus 247 GIdeL~~~I~~~~~ 260 (332)
T PRK09435 247 GIDEIWQAIEDHRA 260 (332)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887654
No 442
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.46 E-value=0.00024 Score=68.33 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=37.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc-----cc----------CCCCCceeeeEEE--E-eCCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC-----PA----------APRPGVTRVLKWV--R-FGKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~-----~~----------~~~~g~T~~~~~~--~-~~~~~~l~DtPGi~~ 154 (256)
+|+++|+.++|||||+++|...... .+ ....|+|...... . -+..+.++||||...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence 5899999999999999999853211 01 1123666554322 2 245689999999754
No 443
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.45 E-value=0.00079 Score=57.96 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=35.2
Q ss_pred EEEEEEecC---CCCCCCCHHHH--Hhh-C-CCCEEEEEecCCCCChHHHHHHHHHHHH
Q 025200 3 VVIEVRDAR---IPLSTTHPLMD--QWL-G-NRKRILVLNREDMISMADRNAWATYFAK 54 (256)
Q Consensus 3 vvi~VvDar---~p~~~~~~~l~--~~l-~-~k~~ilVlNK~DL~~~~~~~~w~~~~~~ 54 (256)
+|++|+|.- .|.+.....+. .++ + +-|.|+|+||+|+.+.+-..+|+.-|+.
T Consensus 150 vv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~ 208 (366)
T KOG1532|consen 150 VVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEA 208 (366)
T ss_pred EEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHH
Confidence 688999973 23222222221 122 2 5699999999999999988999987653
No 444
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00047 Score=60.51 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCCCCC----CCHHHHHhhCCCCEEEEEecCCCCChHHHH----HHHHHHH---HcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFA---KQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~----~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~----~w~~~~~---~~~~~vi~~sa~~~~g 69 (256)
.|-.++|+.|..|.-. ......+.++-|.+|+|=||+||++++... +.++|.+ ..+.+++++||..+.+
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~N 189 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKAN 189 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccC
Confidence 4778999999866322 222233456678999999999999987543 2333333 1346799999999999
Q ss_pred hhHHHHHHHHHHhh
Q 025200 70 TMKLSRLAKALASD 83 (256)
Q Consensus 70 ~~~L~~~i~~l~~~ 83 (256)
++.|.+.+.+..+.
T Consensus 190 IDal~e~i~~~Ipt 203 (415)
T COG5257 190 IDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998877544
No 445
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.43 E-value=0.00019 Score=57.97 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=41.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc----ccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC----PAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~----~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
..++|.+.|-+|||||||+|....++-. .+=..-..||+++.-.-.--++++||.|--
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE 69 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH
Confidence 4689999999999999999999875432 122234677776532111237899999974
No 446
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.43 E-value=0.00047 Score=54.75 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHH----hhC-CCCEEEEEecCCCCChHHH-HHHHHHH-HHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQ----WLG-NRKRILVLNREDMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~----~l~-~k~~ilVlNK~DL~~~~~~-~~w~~~~-~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|+++.|.|..++-+..+. .+.+ ... +.|+++|.||+||.....+ .+....+ +..+..++.+||++|.|+++
T Consensus 73 ~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 73 AQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5899999998876443221 1111 111 4689999999999654321 1122222 33456678899999999888
Q ss_pred HHHHHH
Q 025200 73 LSRLAK 78 (256)
Q Consensus 73 L~~~i~ 78 (256)
+...+.
T Consensus 153 ~f~~l~ 158 (161)
T cd04117 153 SFTRLT 158 (161)
T ss_pred HHHHHH
Confidence 766554
No 447
>PLN03127 Elongation factor Tu; Provisional
Probab=97.41 E-value=0.00085 Score=62.48 Aligned_cols=44 Identities=18% Similarity=0.044 Sum_probs=32.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCE-EEEEecCCCCChHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD 44 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~-ilVlNK~DL~~~~~ 44 (256)
+|++++|+||+.+......+...++. +.|. |+++||+|+++.++
T Consensus 148 aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 148 MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 69999999999887655544444443 5674 68899999997543
No 448
>PRK12735 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.00074 Score=61.94 Aligned_cols=81 Identities=17% Similarity=0.074 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEE-EEEecCCCCChHHHH-----HHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~~~~-----~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+||.........+....+. +.|.+ +|+||+|+++.++.. +..++++..+ .+++++|+.+|
T Consensus 99 aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 99 MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcc
Confidence 59999999999765443333333332 56766 579999998644322 2223333322 46788999887
Q ss_pred c----------chhHHHHHHHHHH
Q 025200 68 M----------GTMKLSRLAKALA 81 (256)
Q Consensus 68 ~----------g~~~L~~~i~~l~ 81 (256)
. +...|.+.+.+..
T Consensus 179 ~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 179 LEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred ccCCCCCcccccHHHHHHHHHhcC
Confidence 3 4556666665543
No 449
>PRK00049 elongation factor Tu; Reviewed
Probab=97.40 E-value=0.00074 Score=61.96 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=50.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEE-EEEecCCCCChHHH-H----HHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADR-N----AWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~~~-~----~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++++|+||+.+......++..++. +.|.+ +++||+|+++.++. + +..+++...+ .+++++|+.++
T Consensus 99 aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g 178 (396)
T PRK00049 99 MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred CCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccc
Confidence 69999999999877655444444433 57876 58999999864332 1 2223343322 46788999876
Q ss_pred c----------chhHHHHHHHHH
Q 025200 68 M----------GTMKLSRLAKAL 80 (256)
Q Consensus 68 ~----------g~~~L~~~i~~l 80 (256)
. +...|.+.+.+.
T Consensus 179 ~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 179 LEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cCCCCcccccccHHHHHHHHHhc
Confidence 4 334555555543
No 450
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.40 E-value=0.00053 Score=56.21 Aligned_cols=79 Identities=16% Similarity=0.022 Sum_probs=50.8
Q ss_pred CcEEEEEEecCCCCCCCCHH--HHHhh----CCCCEEEEEecCCCCChHH-H------------HHHHHHH-HHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMAD-R------------NAWATYF-AKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~~~~-~------------~~w~~~~-~~~~-~~v 59 (256)
+|++|+|.|..++.+..+.. +...+ .+.|+++|.||.||.+... . .+..+.+ ++.+ ..+
T Consensus 75 a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 154 (191)
T cd01875 75 TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKY 154 (191)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 68999999998876643321 22212 3579999999999964321 0 0111112 2334 467
Q ss_pred EEecCcCCcchhHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~ 79 (256)
+.+||++|.|++++.+.+.+
T Consensus 155 ~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 155 LECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred EEeCCCCCCCHHHHHHHHHH
Confidence 88999999999887776554
No 451
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00039 Score=61.73 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCC---CCHHHHHhhCCCCEEEEEecCCCCChHH------HHHHHHHHHHcC---CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLST---THPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG---TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~------~~~w~~~~~~~~---~~vi~~sa~~~~ 68 (256)
||+.|.++|||..+.. +...+..+++-+.+++.+||+||++-.+ ..++..+-++.+ ..++++||..|.
T Consensus 110 adlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GD 189 (431)
T COG2895 110 ADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGD 189 (431)
T ss_pred ccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCC
Confidence 6999999999977654 3455777778889999999999996532 233333334445 457889999887
Q ss_pred ch
Q 025200 69 GT 70 (256)
Q Consensus 69 g~ 70 (256)
++
T Consensus 190 NV 191 (431)
T COG2895 190 NV 191 (431)
T ss_pred cc
Confidence 65
No 452
>PTZ00416 elongation factor 2; Provisional
Probab=97.37 E-value=0.00031 Score=70.29 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=25.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCce
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 132 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T 132 (256)
.+|+++|++++|||||+++|............|.|
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~ 54 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDA 54 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCce
Confidence 47999999999999999999975443333333433
No 453
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.36 E-value=0.00081 Score=54.14 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCCCCCH-H-HHHh---h--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-L-MDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~-l~~~---l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|.|..+..+.... . +..+ . .+.|+++|.||+|+..+.. ...+..+.+..+.+++.+|++++.|+.
T Consensus 73 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 73 IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVE 152 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 4778888888764322111 1 1111 1 2469999999999964322 223333344445678899999999999
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
++.+.+.....
T Consensus 153 ~l~~~l~~~~~ 163 (180)
T cd04137 153 EAFELLIEEIE 163 (180)
T ss_pred HHHHHHHHHHH
Confidence 88777665443
No 454
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.36 E-value=0.00071 Score=57.18 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=44.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEE-EEEecCCCCChH-HHHHHHHHHHH-------cCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMA-DRNAWATYFAK-------QGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~-~~~~w~~~~~~-------~~~~vi~~sa~~~ 67 (256)
+|++++|+|++.+.......+..++. +.|.+ +|+||+|++++. ...+..+.+++ .+.+++++||++.
T Consensus 104 aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred cCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 69999999999877766666655553 46755 599999998433 23333322211 2367899998865
No 455
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.35 E-value=0.0013 Score=63.28 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=51.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHH------------------H-------HHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD------------------R-------NAWATYFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~------------------~-------~~w~~~~~ 53 (256)
+|++++|+|++........+...++ .+.|.++++||+|+.+... . .+...++.
T Consensus 95 aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~ 174 (586)
T PRK04004 95 ADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLS 174 (586)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6899999999975443333333333 2689999999999863211 0 01112232
Q ss_pred HcC---------------CeEEEecCcCCcchhHHHHHHHHH
Q 025200 54 KQG---------------TKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 54 ~~~---------------~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+.| .+++.+||.+|.|+++|.+.+..+
T Consensus 175 ~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 175 ELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 222 357889999999999888776543
No 456
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.34 E-value=0.0011 Score=52.81 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHhh--------CCCCEEEEEecCCCCChHH-HHHHHHHHHHcC-CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQWL--------GNRKRILVLNREDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~l--------~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~-~~vi~~sa~~~~ 68 (256)
+|++++|.|..++.+.... .+ ..++ .+.|+++|.||+|+..... .++..++.++.+ ..++.+||++|.
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 78 SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 5889999998877543322 11 1111 1358999999999964321 223333334444 467889999999
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|+.++.+.+
T Consensus 158 ~v~~~~~~~ 166 (170)
T cd04116 158 NVAAAFEEA 166 (170)
T ss_pred CHHHHHHHH
Confidence 988776654
No 457
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00017 Score=68.87 Aligned_cols=80 Identities=24% Similarity=0.155 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCCCCCCCHHH-HHhhC-CCCEEEEEecCCCCChHHHHHHHHHH-HHcCCeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l-~~~l~-~k~~ilVlNK~DL~~~~~~~~w~~~~-~~~~~~vi~~sa~~~~g~~~L~~~i 77 (256)
.|+||-|+||.+.. ||-.+ .+++. ++|.++++|++|.+.+..+.--.+.+ +..|.++++++|++|.|++++++.+
T Consensus 82 ~D~ivnVvDAtnLe--RnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 82 PDLIVNVVDATNLE--RNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred CCEEEEEcccchHH--HHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 59999999998652 33322 12332 78999999999998765432222222 3468999999999999999998877
Q ss_pred HHHHh
Q 025200 78 KALAS 82 (256)
Q Consensus 78 ~~l~~ 82 (256)
.+..+
T Consensus 160 ~~~~~ 164 (653)
T COG0370 160 IELAE 164 (653)
T ss_pred HHhcc
Confidence 65543
No 458
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0013 Score=60.03 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=60.6
Q ss_pred CcEEEEEEecCCCCCCCCH---HHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHH----cCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----QGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~---~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~----~~~~vi~~sa~~~~g~~~L 73 (256)
+|..++|+|+.+.+....- .+.++++.+..++|+||+|.++++.+++..+.+.+ ...+++.+|++.|.|+++|
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred CceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence 4889999999866665433 34455566777999999999988765554444322 1245677899999999999
Q ss_pred HHHHHHHHh
Q 025200 74 SRLAKALAS 82 (256)
Q Consensus 74 ~~~i~~l~~ 82 (256)
++.+.++..
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHhhh
Confidence 999998874
No 459
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0012 Score=61.77 Aligned_cols=80 Identities=20% Similarity=0.085 Sum_probs=57.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHc-------C--CeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-------G--TKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-------~--~~vi~~sa~~~~g 69 (256)
+|+|+.|+-|.+.....-.+..+..+ +-|+|+.+||+|.. ....++.+..+... | .+++.+||++|.|
T Consensus 225 tDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred ccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 59999999999888765444444443 67999999999963 33334444444433 3 4689999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
.+.|.+.+.-++
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999888765443
No 460
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.33 E-value=0.00043 Score=55.40 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=41.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH------HcC--CeEEEecCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA------KQG--TKVIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~------~~~--~~vi~~sa~ 65 (256)
+|++|+|+|+.++.+..+ ..+...+ .++|+++|+||+|+.......+..+++. +.+ ..++.+||+
T Consensus 67 a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~ 146 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146 (167)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEce
Confidence 689999999987743221 1122222 2579999999999975443333333321 112 235558999
Q ss_pred CC
Q 025200 66 LG 67 (256)
Q Consensus 66 ~~ 67 (256)
+|
T Consensus 147 ~g 148 (167)
T cd04161 147 EG 148 (167)
T ss_pred eC
Confidence 88
No 461
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.32 E-value=0.00048 Score=69.00 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
.+|+++|+.++|||||+++|.....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g 44 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999986543
No 462
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.31 E-value=0.00033 Score=64.58 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..++|+++|..++|||||+.+|.+.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCe
Confidence 4689999999999999999999763
No 463
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.30 E-value=0.00056 Score=56.78 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.8
Q ss_pred ECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeC---CcEEEEecCCCC
Q 025200 103 VGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 153 (256)
Q Consensus 103 ~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~ 153 (256)
+|.+|||||||++++...... ...+..|.+.....+..+ -.+.++||||--
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e 55 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE 55 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch
Confidence 699999999999999854321 112222333322233332 257899999974
No 464
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.30 E-value=1.9e-05 Score=73.02 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=60.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC-----cccCCCCCceeeeEEEE--eCCcEEEEecCCCCCCCC----CcHHHHHH
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMRI----SDQAAAIK 165 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~-----~~~~~~~g~T~~~~~~~--~~~~~~l~DtPGi~~~~~----~~~~~~~~ 165 (256)
..-|+.||.++.||+++||++...-. ..-++.||+|.....+. ....-.+.||||++.+.. -..|+...
T Consensus 309 ~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~ 388 (572)
T KOG1249|consen 309 AGPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLN 388 (572)
T ss_pred ccchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhh
Confidence 45589999999999999999984322 23468899998765444 344568999999987531 12333334
Q ss_pred HHHhccccccccchhHHHHHHHHHHHhC
Q 025200 166 LAICDDIGERSYDVADVAAILVQMLARI 193 (256)
Q Consensus 166 l~~~~~i~~~~~~~~~~~~~~~~~l~~~ 193 (256)
++....+.++.+.+..--.+++..|-|+
T Consensus 389 v~p~~~lrprtf~vkpG~sl~iGGl~RL 416 (572)
T KOG1249|consen 389 VTPRRVLRPRTFRVKPGYSLFIGGLVRL 416 (572)
T ss_pred cCcccccccceEEcCCCcEEEEeeeEEe
Confidence 4444555555555443333334444443
No 465
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.30 E-value=0.00023 Score=70.08 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=37.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCc---------c-cC-----CCCCceeeeEEEE----e---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMC---------P-AA-----PRPGVTRVLKWVR----F---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~---------~-~~-----~~~g~T~~~~~~~----~---~~~~~l~DtPGi~~ 154 (256)
.+|+++|..++|||||+++|...... . .. ...|+|.....+. . +..+.++||||...
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 47999999999999999999742110 0 01 1145565432111 1 23588999999975
No 466
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.27 E-value=0.00052 Score=54.58 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh------CCCCEEEEEecCCCCC--hHH-HHHHHHHHH-Hc-CCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMIS--MAD-RNAWATYFA-KQ-GTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l------~~k~~ilVlNK~DL~~--~~~-~~~w~~~~~-~~-~~~vi~~sa~~~~ 68 (256)
+|++++|.|..++.+..+ ..+...+ .+.|+++|.||.||.. +.. ..+..+.+. +. +..++.+||+++.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 589999999988866544 2222222 2358999999999842 221 122222232 22 3567889999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 146 ~i~~~f~~~~ 155 (158)
T cd04103 146 NVERVFQEAA 155 (158)
T ss_pred CHHHHHHHHH
Confidence 9988766543
No 467
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.26 E-value=0.00045 Score=66.61 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=38.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCc--------cc------CCCCCceeeeEEEEe--------CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMC--------PA------APRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~--------~~------~~~~g~T~~~~~~~~--------~~~~~l~DtPGi~~ 154 (256)
.+|+++|+.++|||||+++|...... .+ ....|.|-..+.+.+ ...+.++||||...
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 36899999999999999999853211 01 112466655433322 22478999999975
No 468
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.24 E-value=0.00092 Score=64.36 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCCh---HHHHHHHHHHHHc-------CCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM---ADRNAWATYFAKQ-------GTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~---~~~~~w~~~~~~~-------~~~vi~~sa~~~~ 68 (256)
+|.+++|+||..........+...+ .+.|.|+|+||+|+... +..++..+.|.+. ..++++.||+.|.
T Consensus 88 aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 88 VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGW 167 (594)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCc
Confidence 6999999999876543333333333 26799999999998642 2234445555322 2467889999885
Q ss_pred ----------chhHHHHHHHHHHh
Q 025200 69 ----------GTMKLSRLAKALAS 82 (256)
Q Consensus 69 ----------g~~~L~~~i~~l~~ 82 (256)
|+..|.+.+.+..+
T Consensus 168 ~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 168 ASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred ccccCcccccCHHHHHHHHHHhCC
Confidence 56666666555443
No 469
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.21 E-value=0.00093 Score=54.46 Aligned_cols=80 Identities=18% Similarity=0.022 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHH------------HHHHHHHHHHcC-CeEEE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD------------RNAWATYFAKQG-TKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~------------~~~w~~~~~~~~-~~vi~ 61 (256)
+|+++.+.|...+.+..+. .+...+ .+.|+++|.||+|+.+... .++-..+-++.+ ..++.
T Consensus 73 a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 152 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYME 152 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEE
Confidence 5789999998766443221 122222 2579999999999854210 011111122334 36788
Q ss_pred ecCcCCcchhHHHHHHHHH
Q 025200 62 SNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~~l 80 (256)
+||++|.|++++.+.+.+.
T Consensus 153 ~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 153 CSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ccCCCCCCHHHHHHHHHHH
Confidence 9999999999887776543
No 470
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.20 E-value=0.00069 Score=66.94 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~ 120 (256)
.+|+++|+.++|||||+.+|...
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~ 43 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAG 43 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 471
>PRK12740 elongation factor G; Reviewed
Probab=97.19 E-value=0.00077 Score=65.95 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=33.3
Q ss_pred ECCCCCcHHHHHHHHhcCCCcc-----------cC------CCCCceeeeEEEE---eCCcEEEEecCCCCC
Q 025200 103 VGYPNVGKSSLINRLLKRRMCP-----------AA------PRPGVTRVLKWVR---FGKDLEFLDSPGIIP 154 (256)
Q Consensus 103 ~G~pnvGKSslin~l~~~~~~~-----------~~------~~~g~T~~~~~~~---~~~~~~l~DtPGi~~ 154 (256)
+|.+|+|||||+|+|....... +. ...|.|....... -+..+.++||||...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH
Confidence 6999999999999996432211 11 1245555443222 245689999999864
No 472
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.17 E-value=0.0011 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.3
Q ss_pred ceEEEEECCCCCcHHHHHH-HHhc
Q 025200 97 AVRAGIVGYPNVGKSSLIN-RLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin-~l~~ 119 (256)
.++|+++|.+|||||||++ ...+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~ 25 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACN 25 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999996 4543
No 473
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.17 E-value=0.00032 Score=57.21 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=33.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCccc--CCCCCceeeeEEEEeCCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~--~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 155 (256)
-.|+++|.+|+||++|+..|...+...+ |-.|..+... .-..+..+.++|+||--.-
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHH
Confidence 3689999999999999999997643221 1111111110 0011456899999998654
No 474
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.16 E-value=0.0017 Score=51.73 Aligned_cols=78 Identities=10% Similarity=-0.069 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCChHHH--HHHHHHHHHcC-CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMADR--NAWATYFAKQG-TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~-~~vi~~sa~~~~g~ 70 (256)
+|.+++|+|..++.+..+. .+.+.. .+.|+++|.||+|+.+.... ++-.++.+..+ .+++.+||+++.|+
T Consensus 73 ~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 73 GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCH
Confidence 4778899998766433211 111111 25799999999999754321 11122223334 56889999999998
Q ss_pred hHHHHHHH
Q 025200 71 MKLSRLAK 78 (256)
Q Consensus 71 ~~L~~~i~ 78 (256)
+++.+.+.
T Consensus 153 ~~~f~~i~ 160 (168)
T cd04177 153 DEVFIDLV 160 (168)
T ss_pred HHHHHHHH
Confidence 87766543
No 475
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.15 E-value=0.0021 Score=53.61 Aligned_cols=78 Identities=13% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.+++|.|.....+..+. . +.+...+.|+++|.||+|+.+.....+..++.+..+..++.+|++++.|+++...
T Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 82 GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 4788999998765543211 1 1112235788999999999754332333444455566788899999999877655
Q ss_pred HHH
Q 025200 76 LAK 78 (256)
Q Consensus 76 ~i~ 78 (256)
.+.
T Consensus 162 ~ia 164 (215)
T PTZ00132 162 WLA 164 (215)
T ss_pred HHH
Confidence 443
No 476
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0015 Score=53.12 Aligned_cols=59 Identities=29% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCCc---EEEEecCC
Q 025200 93 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 151 (256)
Q Consensus 93 ~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~~---~~l~DtPG 151 (256)
.....+++.++|..|||||||+-+....+--.. .+.-|..--.+.+.++.. +.++||.|
T Consensus 1 ~~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG 63 (200)
T KOG0092|consen 1 MATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG 63 (200)
T ss_pred CCcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC
No 477
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.12 E-value=0.0019 Score=54.53 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChH-HHHH------------HHHHH-HHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA-DRNA------------WATYF-AKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~-~~~~------------w~~~~-~~~~-~~v 59 (256)
+|++|+|.|..++.+..+- .+...+ .+.|+|+|.||+||.+.. .... -.+.+ ++.+ ..+
T Consensus 73 ~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y 152 (222)
T cd04173 73 SDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSY 152 (222)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEE
Confidence 6899999999988554332 122111 357999999999996421 1111 11111 2334 367
Q ss_pred EEecCcCCc-chhHHHHHHHH
Q 025200 60 IFSNGQLGM-GTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~-g~~~L~~~i~~ 79 (256)
+.+||+++. |++++...+..
T Consensus 153 ~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 153 VECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred EEcCCCcCCcCHHHHHHHHHH
Confidence 889999887 48877665443
No 478
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.11 E-value=0.0021 Score=53.49 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=39.7
Q ss_pred CCCEEEEEecCCCCCh--HHHHHHHHHHHHcC--CeEEEecCcCCcchhHHHHHHHH
Q 025200 27 NRKRILVLNREDMISM--ADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 27 ~k~~ilVlNK~DL~~~--~~~~~w~~~~~~~~--~~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
.++.++|+||+|+.+. ....+..+.+++.+ .+++.+|++++.|++++.+.+.+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999864 22444555555433 67889999999999988877654
No 479
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.11 E-value=0.0012 Score=55.75 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
+|+++|.+++|||||++++..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999984
No 480
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.09 E-value=0.0017 Score=60.43 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=44.3
Q ss_pred CcEEEEEEecCCCCCC----CCHHHHHhh-----CCC-CEEEEEecCCCCChH--------HHHHHHHHHHHcC-----C
Q 025200 1 MDVVIEVRDARIPLST----THPLMDQWL-----GNR-KRILVLNREDMISMA--------DRNAWATYFAKQG-----T 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~----~~~~l~~~l-----~~k-~~ilVlNK~DL~~~~--------~~~~w~~~~~~~~-----~ 57 (256)
+|.+|.|+||...... +.++..+.+ .+. ++|+++||+|+.+.. ..++..+++++.| .
T Consensus 109 aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~ 188 (447)
T PLN00043 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKI 188 (447)
T ss_pred ccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6899999999974211 112222221 244 568889999987321 1334445555555 4
Q ss_pred eEEEecCcCCcchh
Q 025200 58 KVIFSNGQLGMGTM 71 (256)
Q Consensus 58 ~vi~~sa~~~~g~~ 71 (256)
.++++|+..|.|+.
T Consensus 189 ~~ipiSa~~G~ni~ 202 (447)
T PLN00043 189 PFVPISGFEGDNMI 202 (447)
T ss_pred eEEEEecccccccc
Confidence 57899999998864
No 481
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0017 Score=60.61 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHhh-CCCCEEEEEecCCCC--ChHHHH-HHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMI--SMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~--~~~~~~-~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
||-+|.|+||...+...--. +...+ .+-.+|.|+||+|+- +++.+. +..+.|.....+++++||+.|.+.+++.+
T Consensus 149 c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~ 228 (650)
T KOG0462|consen 149 CDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLE 228 (650)
T ss_pred cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHH
Confidence 57799999998776543211 11112 367889999999985 344433 34444544557899999999999999887
Q ss_pred HHHHH
Q 025200 76 LAKAL 80 (256)
Q Consensus 76 ~i~~l 80 (256)
.+-+-
T Consensus 229 AII~r 233 (650)
T KOG0462|consen 229 AIIRR 233 (650)
T ss_pred HHHhh
Confidence 76543
No 482
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.02 E-value=0.0034 Score=51.75 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH---------HHHHHHH--------HHHcC---Ce
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------RNAWATY--------FAKQG---TK 58 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~---------~~~w~~~--------~~~~~---~~ 58 (256)
+|++++|.|. +++..+..+.+.+. ++|+++|+||+|+..+.. .++.++. +...+ ..
T Consensus 81 ~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~ 158 (197)
T cd04104 81 YDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPP 158 (197)
T ss_pred cCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4788887654 35655555555554 589999999999964321 1122221 22222 46
Q ss_pred EEEecCc--CCcchhHHHHHHHHHHhhh
Q 025200 59 VIFSNGQ--LGMGTMKLSRLAKALASDV 84 (256)
Q Consensus 59 vi~~sa~--~~~g~~~L~~~i~~l~~~~ 84 (256)
++.+|+. .+.+...|.+.+..-+++.
T Consensus 159 v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 159 VFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred EEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 7778887 4677788887776655543
No 483
>PRK10218 GTP-binding protein; Provisional
Probab=97.02 E-value=0.0025 Score=61.46 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCCh---HHHHHHHHHHHH-------cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM---ADRNAWATYFAK-------QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~---~~~~~w~~~~~~-------~~~~vi~~sa~~~~ 68 (256)
+|.+|+|+|+..........+...+ .+.|.++|+||+|+... +.+++..+.|.. ...+++++||.+|.
T Consensus 92 aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 92 VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCc
Confidence 6899999999876554433333332 36899999999998532 334555555533 12458899999987
Q ss_pred ----------chhHHHHHHHHHHh
Q 025200 69 ----------GTMKLSRLAKALAS 82 (256)
Q Consensus 69 ----------g~~~L~~~i~~l~~ 82 (256)
|+..|.+.+....+
T Consensus 172 ~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 172 AGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccCCccccccchHHHHHHHHHhCC
Confidence 35556555554443
No 484
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.01 E-value=0.0039 Score=50.47 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=55.3
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC--C-CCEEEEEecCCCCChHHHHHHHHHHHHc--CCeEEEecCcCCcchhHHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 76 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~~~~~~w~~~~~~~--~~~vi~~sa~~~~g~~~L~~~ 76 (256)
+-.|.++|++.|.......+.+++. + -|.++..||.||-+....++..+++... ..+++..++..+++..+....
T Consensus 93 ~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 93 VGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHH
Confidence 4578899999998875566666654 3 6899999999998665555566666554 578889999988886654443
No 485
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.98 E-value=0.002 Score=51.24 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=40.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 153 (256)
+.++|.++|..|+||||+++++.+.....+++.-|.--..-. .-+-.+.+.|.-|=.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQK 71 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEE-ecceEEEEEEcCCcc
Confidence 478999999999999999999999886666666553221111 113356778877764
No 486
>PLN03126 Elongation factor Tu; Provisional
Probab=96.97 E-value=0.0043 Score=58.25 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHHH-H----HHHHHHHHc-----CCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADR-N----AWATYFAKQ-----GTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~-~----~w~~~~~~~-----~~~vi~~sa~~~ 67 (256)
+|+++.|+||..+......+....+. +.| .|+++||+|+++.++. + +..+++++. ..+++++|+.++
T Consensus 168 aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 168 MDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 69999999999876544333333322 567 6778999999975432 1 333344443 245778888766
No 487
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.96 E-value=0.0036 Score=52.18 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=29.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 40 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 40 (256)
+|+++.|+|+....+.....+.+.. .++|.++|+||+|++
T Consensus 95 aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 95 SDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 6899999999877654333332322 368999999999986
No 488
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.92 E-value=0.0027 Score=52.62 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCCh--HHH---HHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM--ADR---NAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~--~~~---~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.+|.|+|+........ .....+ ..-=++|+||+|+++. .+. .++.+.+ ..+.+++++|+++|.|++++.+
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~qi-~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~el~~ 189 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPGI-TRSDLLVINKIDLAPMVGADLGVMERDAKKM-RGEKPFIFTNLKTKEGLDTVID 189 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhHh-hhccEEEEEhhhccccccccHHHHHHHHHHh-CCCCCEEEEECCCCCCHHHHHH
Confidence 367889999875433211 101111 1223899999999852 233 3333333 2346789999999999999988
Q ss_pred HHHH
Q 025200 76 LAKA 79 (256)
Q Consensus 76 ~i~~ 79 (256)
.+.+
T Consensus 190 ~i~~ 193 (199)
T TIGR00101 190 WIEH 193 (199)
T ss_pred HHHh
Confidence 7764
No 489
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.009 Score=57.80 Aligned_cols=117 Identities=24% Similarity=0.231 Sum_probs=72.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCC------hHH------------HHHHHH-------HHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS------MAD------------RNAWAT-------YFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~------~~~------------~~~w~~-------~~~ 53 (256)
||++|.|+|....+-..-.+-.++++ +-|+|+.|||+|-+- ... +.++.. .|.
T Consensus 564 C~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa 643 (1064)
T KOG1144|consen 564 CDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA 643 (1064)
T ss_pred cceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 79999999998877665444344554 569999999999641 111 111211 222
Q ss_pred HcC---------------CeEEEecCcCCcchhHHHHHHHHHHhhhhhhhh---------------------------cc
Q 025200 54 KQG---------------TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRR---------------------------SK 91 (256)
Q Consensus 54 ~~~---------------~~vi~~sa~~~~g~~~L~~~i~~l~~~~~~~~~---------------------------~~ 91 (256)
++| ...+++||.+|.|+.+|..++.++.+.....+- ..
T Consensus 644 EQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvN 723 (1064)
T KOG1144|consen 644 EQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVN 723 (1064)
T ss_pred HcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEc
Confidence 333 235678999999999998888776554322110 11
Q ss_pred CCCCCceEEEEECCCCCcHHHHHHHHh
Q 025200 92 GLLPRAVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 92 ~~~~~~~~i~~~G~pnvGKSslin~l~ 118 (256)
|.....=+|++||+-|- =-|-|++|+
T Consensus 724 G~L~eGD~IvvcG~~Gp-IvTtIRaLL 749 (1064)
T KOG1144|consen 724 GELHEGDQIVVCGLQGP-IVTTIRALL 749 (1064)
T ss_pred ceeccCCEEEEcCCCCc-hhHHHHHhc
Confidence 22233457899998765 345566665
No 490
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.83 E-value=0.0029 Score=51.16 Aligned_cols=61 Identities=13% Similarity=0.322 Sum_probs=43.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccC------CCCC---ceeeeEEEEe----CCcEEEEecCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA------PRPG---VTRVLKWVRF----GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~------~~~g---~T~~~~~~~~----~~~~~l~DtPGi~~~~ 156 (256)
...+|++.|--++||+|++.++..+....+. ..-+ +|....+-.+ +.++.|+||||-...+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence 4678999999999999999999987643331 1223 6666543332 3579999999986543
No 491
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.83 E-value=0.0034 Score=58.54 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=43.4
Q ss_pred CcEEEEEEecCCCCC-------CCCHHHHHhh--CCCC-EEEEEecCCC--CC--hHH----HHHHHHHHHHcC-----C
Q 025200 1 MDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDM--IS--MAD----RNAWATYFAKQG-----T 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~-------~~~~~l~~~l--~~k~-~ilVlNK~DL--~~--~~~----~~~w~~~~~~~~-----~ 57 (256)
+|+++.|+||..+.. ..-.+...++ .+.| +|+++||+|. ++ ++. .++..+++...+ .
T Consensus 109 aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 188 (446)
T PTZ00141 109 ADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKV 188 (446)
T ss_pred cCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 699999999997652 1111222222 2455 5789999994 32 222 233444444433 4
Q ss_pred eEEEecCcCCcchh
Q 025200 58 KVIFSNGQLGMGTM 71 (256)
Q Consensus 58 ~vi~~sa~~~~g~~ 71 (256)
+++++|+.+|.|+.
T Consensus 189 ~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 189 PFIPISGWQGDNMI 202 (446)
T ss_pred eEEEeecccCCCcc
Confidence 57899999998875
No 492
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.83 E-value=0.0038 Score=52.73 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=30.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 40 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 40 (256)
+|.++.|+|+..+.+.....+.+.. .+.|.++|+||+|+.
T Consensus 97 aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 97 CDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 6899999999987765544443333 257999999999985
No 493
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=96.82 E-value=0.0078 Score=47.11 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=52.6
Q ss_pred CcEEEEEEecCCCCC--CCCHHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~--~~~~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|+|++++||.+|-. ....++.+++. +.|++++-||.|+-+.-.-....+.+. ....-++.+|++...
T Consensus 89 v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCc
Confidence 689999999998633 22345555543 579999999999864432223333221 111335678999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
+++.+.+.+.+..
T Consensus 169 Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 169 NIDITLDWLIEHS 181 (186)
T ss_pred cHHHHHHHHHHHh
Confidence 9988887766543
No 494
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.81 E-value=0.00084 Score=51.07 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=33.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
|||+||..++||+||.|+|.|.... +--|..+.+ . +-..|||||-..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQAve~---~-d~~~IDTPGEy~ 49 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQAVEF---N-DKGDIDTPGEYF 49 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----hcccceeec---c-CccccCCchhhh
Confidence 6899999999999999999986542 223333332 1 224789999875
No 495
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0064 Score=54.05 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCCH---HHHHhhCCCCEEEEEecCCCCChHHHHHHHHH----H----HHc---C-CeEEEecCc
Q 025200 1 MDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISMADRNAWATY----F----AKQ---G-TKVIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~---~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~----~----~~~---~-~~vi~~sa~ 65 (256)
+|+.+.|+|+....-+... .+-+ +.-+++++|+||+|+.++.+.+.-++. + +.. | .+++.+|+.
T Consensus 94 iDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~ 172 (522)
T KOG0461|consen 94 IDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAA 172 (522)
T ss_pred eeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecC
Confidence 4899999999765544332 2322 235789999999999988654333332 2 222 2 568889999
Q ss_pred CC----cchhHHHHHHHH
Q 025200 66 LG----MGTMKLSRLAKA 79 (256)
Q Consensus 66 ~~----~g~~~L~~~i~~ 79 (256)
.| +++.+|++.+.+
T Consensus 173 ~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 173 DGYFKEEMIQELKEALES 190 (522)
T ss_pred CCccchhHHHHHHHHHHH
Confidence 98 566666666554
No 496
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.77 E-value=0.006 Score=53.83 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCCCCC-CCHH--HHHhhC---CCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLST-THPL--MDQWLG---NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-~~~~--l~~~l~---~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L 73 (256)
.++|++++|++.-.+- .+.+ +.+.++ .+|+++|+||+|+.+.+..++...++...|. ....+++..+.+.+.+
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKL 327 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHH
Confidence 4799999999833221 1111 222222 4799999999999988887777777666553 3456777777777766
Q ss_pred HHHHHHH
Q 025200 74 SRLAKAL 80 (256)
Q Consensus 74 ~~~i~~l 80 (256)
...+...
T Consensus 328 ~~~v~~~ 334 (346)
T COG1084 328 REEVRKT 334 (346)
T ss_pred HHHHHHH
Confidence 6555443
No 497
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.76 E-value=0.004 Score=57.43 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 025200 97 AVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~ 118 (256)
+..|+++|.+||||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999997
No 498
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.75 E-value=0.0045 Score=53.82 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=31.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 41 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 41 (256)
+|++++|+||..........+.+.+. ++|+++++||+|+..
T Consensus 88 aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 88 LDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 68999999998876655444544443 689999999999964
No 499
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.74 E-value=0.0038 Score=55.06 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=38.4
Q ss_pred hCCCCEEEEEecCCCCChHHHHHHH-------HHHHH----cCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 25 LGNRKRILVLNREDMISMADRNAWA-------TYFAK----QGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 25 l~~k~~ilVlNK~DL~~~~~~~~w~-------~~~~~----~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+.++|.++|+||+|+.+........ ..+.+ ...+++++|++++.|+++|.+.+.+.
T Consensus 170 l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 170 LMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 3478999999999998765321111 11111 11358899999999999998887665
No 500
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0059 Score=49.66 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=40.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCC-CCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.+++.++|-++||||.|+-..+.+.-.++-. .-|+--....+.++. +++++||.|--.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~ 67 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQES 67 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHH
Confidence 4678999999999999999999776544332 233333334455543 488999999854
Done!