Query 025200
Match_columns 256
No_of_seqs 316 out of 3085
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 3.1E-54 1.1E-58 375.3 29.8 252 1-255 24-281 (282)
2 3cnl_A YLQF, putative uncharac 100.0 2.3E-46 8E-51 322.4 12.3 221 1-255 22-249 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 1.1E-26 3.8E-31 208.8 14.2 142 1-156 72-226 (369)
4 3h2y_A GTPase family protein; 99.9 4.5E-26 1.6E-30 204.7 12.5 142 1-156 70-225 (368)
5 1t9h_A YLOQ, probable GTPase E 99.9 2.4E-23 8.1E-28 182.2 6.5 137 1-157 87-239 (307)
6 1mky_A Probable GTP-binding pr 99.9 5.5E-22 1.9E-26 182.1 11.5 153 1-154 82-240 (439)
7 2hjg_A GTP-binding protein ENG 99.8 4.9E-22 1.7E-26 182.2 5.8 148 1-155 83-236 (436)
8 2rcn_A Probable GTPase ENGC; Y 99.8 7E-21 2.4E-25 169.6 11.6 135 1-155 131-281 (358)
9 2yv5_A YJEQ protein; hydrolase 99.8 4E-20 1.4E-24 161.8 15.0 135 1-155 80-229 (302)
10 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.7E-25 174.3 7.6 149 1-155 103-256 (456)
11 1u0l_A Probable GTPase ENGC; p 99.8 1.2E-18 4.2E-23 152.3 13.5 137 1-157 85-236 (301)
12 2e87_A Hypothetical protein PH 99.7 1.2E-18 4.2E-23 155.7 -1.2 151 6-157 63-229 (357)
13 4a9a_A Ribosome-interacting GT 99.4 1.5E-13 5.2E-18 123.1 7.4 59 96-155 71-132 (376)
14 2qtf_A Protein HFLX, GTP-bindi 99.3 8.2E-14 2.8E-18 124.7 -4.9 59 97-156 178-240 (364)
15 3lxw_A GTPase IMAP family memb 99.2 1.7E-11 5.7E-16 103.8 6.8 60 96-155 20-83 (247)
16 1svi_A GTP-binding protein YSX 99.2 5.4E-11 1.8E-15 95.8 8.6 62 96-157 22-84 (195)
17 1wf3_A GTP-binding protein; GT 99.2 2.7E-11 9.2E-16 105.6 7.3 60 97-156 7-69 (301)
18 3pqc_A Probable GTP-binding pr 99.2 1.2E-10 4.1E-15 93.4 9.8 62 96-157 22-83 (195)
19 1mky_A Probable GTP-binding pr 99.2 1.9E-11 6.6E-16 111.8 5.1 56 99-154 3-61 (439)
20 4dhe_A Probable GTP-binding pr 99.2 3.7E-11 1.3E-15 99.0 6.3 62 96-157 28-94 (223)
21 3iev_A GTP-binding protein ERA 99.1 5.4E-11 1.9E-15 103.9 7.4 61 96-156 9-73 (308)
22 3i8s_A Ferrous iron transport 99.1 5.2E-11 1.8E-15 102.3 7.2 59 97-156 3-64 (274)
23 3gee_A MNME, tRNA modification 99.1 2.9E-11 1E-15 111.7 5.4 59 96-154 232-293 (476)
24 1h65_A Chloroplast outer envel 99.1 1.4E-10 4.9E-15 99.2 8.8 61 96-156 38-101 (270)
25 2gj8_A MNME, tRNA modification 99.1 9.3E-11 3.2E-15 93.3 6.8 59 97-155 4-65 (172)
26 3lxx_A GTPase IMAP family memb 99.1 1.5E-10 5E-15 97.1 8.3 63 96-159 28-95 (239)
27 1xzp_A Probable tRNA modificat 99.1 2.3E-11 7.8E-16 112.5 3.4 57 97-153 243-302 (482)
28 3def_A T7I23.11 protein; chlor 99.1 2E-10 6.8E-15 97.9 8.5 61 96-156 35-98 (262)
29 3b1v_A Ferrous iron uptake tra 99.1 3.4E-10 1.2E-14 97.2 9.9 59 97-156 3-63 (272)
30 3iby_A Ferrous iron transport 99.1 1.7E-10 5.9E-15 98.2 7.9 57 99-156 3-62 (256)
31 3a1s_A Iron(II) transport prot 99.1 2.5E-10 8.7E-15 97.2 8.4 61 96-157 4-67 (258)
32 2hjg_A GTP-binding protein ENG 99.1 6.2E-11 2.1E-15 108.4 4.1 57 98-154 4-63 (436)
33 2cxx_A Probable GTP-binding pr 99.0 5E-10 1.7E-14 89.5 8.4 57 98-156 2-58 (190)
34 1f5n_A Interferon-induced guan 99.0 2E-10 6.9E-15 108.3 6.8 60 96-155 37-104 (592)
35 1ega_A Protein (GTP-binding pr 99.0 1.7E-10 5.7E-15 100.5 5.7 57 97-153 8-67 (301)
36 2xtp_A GTPase IMAP family memb 99.0 3.1E-10 1.1E-14 96.2 7.2 63 96-158 21-87 (260)
37 1jal_A YCHF protein; nucleotid 99.0 2.4E-10 8E-15 101.9 6.4 56 98-154 3-78 (363)
38 3k53_A Ferrous iron transport 99.0 5.1E-10 1.7E-14 95.8 7.9 60 97-157 3-65 (271)
39 1wxq_A GTP-binding protein; st 99.0 1.3E-10 4.4E-15 105.1 4.3 56 98-154 1-83 (397)
40 3geh_A MNME, tRNA modification 99.0 1.4E-10 4.8E-15 106.7 3.9 59 96-154 223-284 (462)
41 4dcu_A GTP-binding protein ENG 99.0 2.7E-10 9.3E-15 104.7 5.8 58 97-154 23-83 (456)
42 3t5d_A Septin-7; GTP-binding p 99.0 5E-10 1.7E-14 96.0 7.0 58 97-154 8-77 (274)
43 2nzj_A GTP-binding protein REM 99.0 8.3E-10 2.8E-14 86.9 7.6 59 96-154 3-64 (175)
44 2wji_A Ferrous iron transport 99.0 1.5E-09 5E-14 85.5 8.5 58 97-155 3-63 (165)
45 1pui_A ENGB, probable GTP-bind 99.0 4.4E-10 1.5E-14 91.7 4.9 59 96-154 25-84 (210)
46 2ohf_A Protein OLA1, GTP-bindi 99.0 5E-10 1.7E-14 100.8 5.7 60 95-155 20-99 (396)
47 2dyk_A GTP-binding protein; GT 98.9 7E-10 2.4E-14 86.1 5.3 58 98-155 2-62 (161)
48 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 9.2E-10 3.1E-14 99.1 6.7 62 94-155 17-98 (392)
49 2wjg_A FEOB, ferrous iron tran 98.9 3.4E-09 1.1E-13 84.7 9.3 59 96-155 6-67 (188)
50 2qu8_A Putative nucleolar GTP- 98.9 1.2E-09 4E-14 90.8 6.6 59 95-154 27-88 (228)
51 1z0j_A RAB-22, RAS-related pro 98.9 2.5E-09 8.5E-14 83.6 7.9 58 96-153 5-66 (170)
52 2aka_B Dynamin-1; fusion prote 98.9 6.3E-10 2.1E-14 95.9 4.3 35 96-130 25-64 (299)
53 1jwy_B Dynamin A GTPase domain 98.9 2.6E-09 8.8E-14 92.9 7.6 27 96-122 23-49 (315)
54 3q72_A GTP-binding protein RAD 98.9 2.1E-09 7.2E-14 83.9 5.8 57 97-154 2-61 (166)
55 2x2e_A Dynamin-1; nitration, h 98.9 2.8E-09 9.7E-14 94.7 6.8 35 96-130 30-69 (353)
56 1ek0_A Protein (GTP-binding pr 98.9 5.6E-09 1.9E-13 81.4 7.7 57 97-153 3-63 (170)
57 1kao_A RAP2A; GTP-binding prot 98.8 8.9E-09 3E-13 79.9 8.3 56 97-154 3-63 (167)
58 2j69_A Bacterial dynamin-like 98.8 7.6E-09 2.6E-13 99.7 9.0 36 96-131 68-103 (695)
59 2fg5_A RAB-22B, RAS-related pr 98.8 7E-09 2.4E-13 83.5 7.5 58 96-153 22-83 (192)
60 1upt_A ARL1, ADP-ribosylation 98.8 6.2E-09 2.1E-13 81.5 7.0 57 95-153 5-62 (171)
61 1x3s_A RAS-related protein RAB 98.8 4E-09 1.4E-13 84.5 5.9 99 1-112 88-194 (195)
62 3r7w_A Gtpase1, GTP-binding pr 98.8 3.8E-09 1.3E-13 92.1 6.1 58 96-153 2-63 (307)
63 1r2q_A RAS-related protein RAB 98.8 7.9E-09 2.7E-13 80.6 7.2 59 96-154 5-67 (170)
64 2dby_A GTP-binding protein; GD 98.8 2.2E-09 7.5E-14 95.9 4.0 57 98-155 2-82 (368)
65 2g6b_A RAS-related protein RAB 98.8 1.3E-08 4.6E-13 80.3 7.7 59 95-153 8-71 (180)
66 2qpt_A EH domain-containing pr 98.8 5.9E-09 2E-13 97.9 6.5 39 96-134 64-104 (550)
67 2www_A Methylmalonic aciduria 98.8 3.9E-09 1.3E-13 93.7 5.0 25 95-119 72-96 (349)
68 1z0f_A RAB14, member RAS oncog 98.8 1.4E-08 4.9E-13 79.9 7.8 58 96-153 14-75 (179)
69 4dsu_A GTPase KRAS, isoform 2B 98.8 1.5E-08 5.3E-13 80.5 8.0 57 96-154 3-64 (189)
70 1wms_A RAB-9, RAB9, RAS-relate 98.8 1.4E-08 4.9E-13 80.0 7.5 58 96-153 6-67 (177)
71 1ksh_A ARF-like protein 2; sma 98.8 1.2E-08 4.1E-13 81.3 7.1 56 96-153 17-73 (186)
72 2ged_A SR-beta, signal recogni 98.8 8.9E-09 3.1E-13 82.6 6.4 80 67-155 23-104 (193)
73 2lkc_A Translation initiation 98.8 4.5E-09 1.5E-13 82.9 4.4 59 95-154 6-67 (178)
74 1z2a_A RAS-related protein RAB 98.8 1.9E-08 6.7E-13 78.3 7.9 58 96-154 4-66 (168)
75 1u8z_A RAS-related protein RAL 98.8 2.3E-08 7.9E-13 77.6 8.2 55 97-153 4-63 (168)
76 1z08_A RAS-related protein RAB 98.8 2E-08 6.7E-13 78.5 7.9 57 96-153 5-66 (170)
77 2oil_A CATX-8, RAS-related pro 98.8 2E-08 6.9E-13 80.6 7.9 60 95-154 23-86 (193)
78 2efe_B Small GTP-binding prote 98.7 2.3E-08 7.7E-13 79.1 8.0 58 96-153 11-72 (181)
79 3tw8_B RAS-related protein RAB 98.7 1.3E-08 4.4E-13 80.3 6.4 57 96-153 8-69 (181)
80 1c1y_A RAS-related protein RAP 98.7 2.5E-08 8.7E-13 77.5 7.9 56 97-154 3-63 (167)
81 2p5s_A RAS and EF-hand domain 98.7 1.7E-08 5.8E-13 81.7 7.1 58 96-153 27-88 (199)
82 1fzq_A ADP-ribosylation factor 98.7 7.7E-09 2.6E-13 82.6 4.8 56 96-153 15-71 (181)
83 1z06_A RAS-related protein RAB 98.7 2.9E-08 1E-12 79.4 8.2 58 96-153 19-80 (189)
84 2gf9_A RAS-related protein RAB 98.7 2.8E-08 9.6E-13 79.5 8.0 59 96-154 21-83 (189)
85 1g16_A RAS-related protein SEC 98.7 1.7E-08 6E-13 78.7 6.4 57 97-154 3-64 (170)
86 1x3s_A RAS-related protein RAB 98.7 2.9E-08 1E-12 79.4 7.7 59 96-154 14-76 (195)
87 2h17_A ADP-ribosylation factor 98.7 1.2E-08 4.3E-13 81.1 5.3 57 96-154 20-77 (181)
88 4dhe_A Probable GTP-binding pr 98.7 3.2E-08 1.1E-12 81.2 7.9 83 1-83 116-211 (223)
89 1zbd_A Rabphilin-3A; G protein 98.7 4.1E-08 1.4E-12 79.4 8.4 58 96-153 7-68 (203)
90 1zj6_A ADP-ribosylation factor 98.7 1.6E-08 5.4E-13 80.9 5.9 57 96-154 15-72 (187)
91 3gj0_A GTP-binding nuclear pro 98.7 1.2E-08 4E-13 84.0 5.2 60 95-154 13-76 (221)
92 2x77_A ADP-ribosylation factor 98.7 1.4E-08 4.7E-13 81.3 5.2 57 96-154 21-78 (189)
93 1lnz_A SPO0B-associated GTP-bi 98.7 4.5E-09 1.5E-13 93.1 2.5 55 99-154 160-218 (342)
94 3cph_A RAS-related protein SEC 98.7 3.9E-08 1.3E-12 79.9 8.0 58 96-154 19-81 (213)
95 2il1_A RAB12; G-protein, GDP, 98.7 2.9E-08 9.8E-13 79.9 7.0 58 96-153 25-86 (192)
96 2ce2_X GTPase HRAS; signaling 98.7 4.6E-08 1.6E-12 75.6 7.9 56 97-154 3-63 (166)
97 3tkl_A RAS-related protein RAB 98.7 4.1E-08 1.4E-12 78.7 7.8 58 96-154 15-77 (196)
98 1vg8_A RAS-related protein RAB 98.7 4E-08 1.4E-12 79.5 7.8 57 96-153 7-68 (207)
99 2y8e_A RAB-protein 6, GH09086P 98.7 3.9E-08 1.3E-12 77.3 7.4 57 96-153 13-74 (179)
100 3t5g_A GTP-binding protein RHE 98.7 4.1E-08 1.4E-12 77.7 7.5 58 96-154 5-66 (181)
101 2erx_A GTP-binding protein DI- 98.7 6.4E-08 2.2E-12 75.4 8.6 57 96-154 2-63 (172)
102 2a9k_A RAS-related protein RAL 98.7 5.5E-08 1.9E-12 77.0 8.2 57 96-154 17-78 (187)
103 3clv_A RAB5 protein, putative; 98.7 4.4E-08 1.5E-12 78.5 7.7 27 96-122 6-32 (208)
104 1moz_A ARL1, ADP-ribosylation 98.7 1.2E-08 4E-13 81.0 4.2 57 96-154 17-74 (183)
105 2bov_A RAla, RAS-related prote 98.7 6.1E-08 2.1E-12 78.3 8.5 57 96-154 13-74 (206)
106 2fh5_B SR-beta, signal recogni 98.7 3.7E-08 1.3E-12 80.4 7.1 56 96-153 6-65 (214)
107 1m2o_B GTP-binding protein SAR 98.7 2.7E-08 9.1E-13 80.1 6.2 57 96-154 22-79 (190)
108 2a5j_A RAS-related protein RAB 98.7 3.7E-08 1.3E-12 79.0 6.9 60 95-154 19-82 (191)
109 3con_A GTPase NRAS; structural 98.7 5.4E-08 1.8E-12 77.8 7.8 56 96-153 20-80 (190)
110 2bme_A RAB4A, RAS-related prot 98.7 4.2E-08 1.4E-12 78.0 7.1 57 96-153 9-70 (186)
111 2hxs_A RAB-26, RAS-related pro 98.7 2.9E-08 9.8E-13 78.2 6.0 60 95-154 4-68 (178)
112 4bas_A ADP-ribosylation factor 98.7 3.8E-08 1.3E-12 79.0 6.8 57 96-154 16-75 (199)
113 2h57_A ADP-ribosylation factor 98.7 3.6E-08 1.2E-12 79.0 6.5 57 96-154 20-79 (190)
114 1ky3_A GTP-binding protein YPT 98.6 3.2E-08 1.1E-12 78.1 6.0 58 96-153 7-69 (182)
115 1f6b_A SAR1; gtpases, N-termin 98.6 2.2E-08 7.6E-13 81.2 4.9 57 96-154 24-81 (198)
116 3kkq_A RAS-related protein M-R 98.6 9.5E-08 3.2E-12 75.7 8.5 58 96-154 17-78 (183)
117 3qq5_A Small GTP-binding prote 98.6 7.4E-09 2.5E-13 94.2 2.1 60 96-155 33-96 (423)
118 1r8s_A ADP-ribosylation factor 98.6 4.4E-08 1.5E-12 76.1 6.3 54 98-153 1-55 (164)
119 2iwr_A Centaurin gamma 1; ANK 98.6 5.9E-08 2E-12 76.6 7.0 58 96-154 6-66 (178)
120 2bcg_Y Protein YP2, GTP-bindin 98.6 5.9E-08 2E-12 78.7 7.2 58 96-154 7-69 (206)
121 2atv_A RERG, RAS-like estrogen 98.6 1E-07 3.4E-12 76.8 8.5 58 96-154 27-88 (196)
122 3oes_A GTPase rhebl1; small GT 98.6 5.7E-08 2E-12 78.6 7.0 57 96-154 23-84 (201)
123 3bc1_A RAS-related protein RAB 98.6 8.6E-08 2.9E-12 76.3 7.9 58 96-153 10-81 (195)
124 2fn4_A P23, RAS-related protei 98.6 9.5E-08 3.2E-12 75.2 8.0 58 96-155 8-70 (181)
125 1zd9_A ADP-ribosylation factor 98.6 5.9E-08 2E-12 77.7 6.8 57 95-153 20-78 (188)
126 4djt_A GTP-binding nuclear pro 98.6 3.5E-08 1.2E-12 80.8 5.3 60 96-155 10-74 (218)
127 3zvr_A Dynamin-1; hydrolase, D 98.6 1.3E-07 4.4E-12 91.5 9.9 64 62-127 18-81 (772)
128 2gf0_A GTP-binding protein DI- 98.6 1.2E-07 4E-12 76.2 8.1 58 96-154 7-68 (199)
129 2ew1_A RAS-related protein RAB 98.6 9.5E-08 3.2E-12 77.8 7.5 57 96-153 25-86 (201)
130 2o52_A RAS-related protein RAB 98.6 6E-08 2E-12 78.6 6.2 58 95-153 23-85 (200)
131 3cpj_B GTP-binding protein YPT 98.6 8E-08 2.7E-12 79.2 7.0 59 96-154 12-74 (223)
132 3pqc_A Probable GTP-binding pr 98.6 1E-07 3.4E-12 76.1 7.3 81 1-81 105-192 (195)
133 3q85_A GTP-binding protein REM 98.6 1E-07 3.6E-12 74.3 6.7 57 97-154 2-63 (169)
134 2gco_A H9, RHO-related GTP-bin 98.6 1.1E-07 3.7E-12 77.0 7.0 58 95-153 23-84 (201)
135 3j2k_7 ERF3, eukaryotic polype 98.6 7.3E-08 2.5E-12 88.1 6.5 58 96-153 16-106 (439)
136 2j1l_A RHO-related GTP-binding 98.6 1.3E-07 4.4E-12 77.5 7.4 56 96-153 33-93 (214)
137 2fv8_A H6, RHO-related GTP-bin 98.6 1.1E-07 3.8E-12 77.3 6.9 58 96-154 24-85 (207)
138 2q3h_A RAS homolog gene family 98.5 1.3E-07 4.3E-12 76.3 7.1 58 95-154 18-80 (201)
139 3iev_A GTP-binding protein ERA 98.5 1E-07 3.5E-12 83.1 6.9 83 1-83 93-182 (308)
140 3c5c_A RAS-like protein 12; GD 98.5 1.9E-07 6.6E-12 74.8 7.8 58 96-155 20-82 (187)
141 1mh1_A RAC1; GTP-binding, GTPa 98.5 2.1E-07 7.2E-12 73.6 7.9 57 96-154 4-65 (186)
142 2yc2_C IFT27, small RAB-relate 98.5 4E-08 1.4E-12 79.4 3.7 58 96-153 19-84 (208)
143 2hup_A RAS-related protein RAB 98.5 1.2E-07 4E-12 77.0 6.4 58 95-153 27-89 (201)
144 3dz8_A RAS-related protein RAB 98.5 3.1E-08 1.1E-12 79.5 2.8 57 96-152 22-82 (191)
145 2b6h_A ADP-ribosylation factor 98.5 7.7E-08 2.6E-12 77.5 5.2 57 96-154 28-85 (192)
146 1svi_A GTP-binding protein YSX 98.5 1.8E-07 6.1E-12 74.9 7.3 79 2-80 107-192 (195)
147 4gzl_A RAS-related C3 botulinu 98.5 1.9E-07 6.4E-12 76.0 7.4 56 96-153 29-89 (204)
148 1nrj_B SR-beta, signal recogni 98.5 7.1E-08 2.4E-12 78.9 4.9 55 96-154 11-67 (218)
149 3reg_A RHO-like small GTPase; 98.5 1.6E-07 5.3E-12 75.4 6.7 56 96-153 22-82 (194)
150 3izq_1 HBS1P, elongation facto 98.5 5.9E-08 2E-12 92.2 4.7 59 95-153 165-256 (611)
151 2cjw_A GTP-binding protein GEM 98.5 1.1E-07 3.9E-12 76.6 5.6 59 96-154 5-68 (192)
152 3t5g_A GTP-binding protein RHE 98.5 5.1E-08 1.8E-12 77.2 3.4 81 1-81 78-167 (181)
153 1m7b_A RND3/RHOE small GTP-bin 98.5 3.2E-07 1.1E-11 73.0 7.6 57 96-153 6-66 (184)
154 3llu_A RAS-related GTP-binding 98.5 2E-07 6.8E-12 75.2 6.4 59 96-154 19-81 (196)
155 4bas_A ADP-ribosylation factor 98.5 1.8E-07 6.2E-12 75.0 6.0 83 1-83 87-189 (199)
156 2zej_A Dardarin, leucine-rich 98.5 2.2E-07 7.7E-12 74.1 6.4 57 97-153 2-67 (184)
157 3t1o_A Gliding protein MGLA; G 98.5 2.1E-07 7.1E-12 74.3 6.2 81 1-81 98-190 (198)
158 3cbq_A GTP-binding protein REM 98.5 9.2E-08 3.2E-12 77.4 4.0 58 96-154 22-84 (195)
159 3lvq_E ARF-GAP with SH3 domain 98.5 2.1E-07 7.1E-12 86.1 6.8 57 95-153 320-377 (497)
160 2fu5_C RAS-related protein RAB 98.5 6.4E-08 2.2E-12 76.8 2.9 57 96-153 7-68 (183)
161 1upt_A ARL1, ADP-ribosylation 98.5 2.5E-07 8.5E-12 72.2 6.2 81 1-81 75-167 (171)
162 3p26_A Elongation factor 1 alp 98.5 1E-07 3.6E-12 88.1 4.6 59 96-154 32-123 (483)
163 1xzp_A Probable tRNA modificat 98.4 2.8E-07 9.6E-12 85.1 7.4 79 1-80 324-402 (482)
164 2h57_A ADP-ribosylation factor 98.4 1.6E-07 5.5E-12 75.1 5.2 81 1-81 91-185 (190)
165 2g3y_A GTP-binding protein GEM 98.4 2.3E-07 7.8E-12 76.4 6.1 58 96-153 36-98 (211)
166 3bwd_D RAC-like GTP-binding pr 98.4 1E-07 3.5E-12 75.3 3.7 57 96-154 7-68 (182)
167 3ihw_A Centg3; RAS, centaurin, 98.4 6.1E-07 2.1E-11 71.7 8.2 59 95-154 18-79 (184)
168 2f7s_A C25KG, RAS-related prot 98.4 1.3E-07 4.4E-12 77.3 4.2 28 95-122 23-50 (217)
169 3mca_A HBS1, elongation factor 98.4 5.2E-08 1.8E-12 92.3 2.0 59 95-153 175-266 (592)
170 3t34_A Dynamin-related protein 98.4 4.4E-07 1.5E-11 80.6 7.6 26 98-123 35-60 (360)
171 3l0i_B RAS-related protein RAB 98.4 3.8E-08 1.3E-12 79.6 0.4 58 96-154 32-94 (199)
172 3bc1_A RAS-related protein RAB 98.4 5E-07 1.7E-11 71.8 7.0 83 1-83 94-185 (195)
173 3t1o_A Gliding protein MGLA; G 98.4 4.3E-07 1.5E-11 72.4 6.6 59 96-154 13-86 (198)
174 2j0v_A RAC-like GTP-binding pr 98.4 6E-07 2E-11 73.0 7.3 57 96-154 8-69 (212)
175 3gee_A MNME, tRNA modification 98.4 6.3E-07 2.2E-11 82.7 8.2 79 1-81 313-396 (476)
176 2lkc_A Translation initiation 98.4 9.1E-07 3.1E-11 69.4 8.1 81 1-82 79-170 (178)
177 1gwn_A RHO-related GTP-binding 98.4 7E-07 2.4E-11 72.8 7.6 57 96-153 27-87 (205)
178 1ksh_A ARF-like protein 2; sma 98.4 3.9E-07 1.3E-11 72.4 5.8 82 1-82 86-179 (186)
179 3q5d_A Atlastin-1; G protein, 98.4 1.8E-07 6.2E-12 85.4 4.3 24 97-120 67-90 (447)
180 1udx_A The GTP-binding protein 98.4 2.8E-07 9.7E-12 83.5 5.5 55 99-154 159-217 (416)
181 3q3j_B RHO-related GTP-binding 98.4 8.4E-07 2.9E-11 72.7 7.8 57 96-153 26-86 (214)
182 2x77_A ADP-ribosylation factor 98.4 3.6E-07 1.2E-11 72.9 5.3 82 1-82 90-183 (189)
183 1wf3_A GTP-binding protein; GT 98.4 2.6E-07 8.9E-12 80.3 4.7 81 1-82 87-172 (301)
184 2dyk_A GTP-binding protein; GT 98.4 2.1E-07 7E-12 71.9 3.7 76 1-79 80-158 (161)
185 1r8s_A ADP-ribosylation factor 98.4 3.5E-07 1.2E-11 70.9 4.9 80 1-80 68-159 (164)
186 3cb4_D GTP-binding protein LEP 98.4 1.8E-07 6E-12 88.6 3.8 114 1-120 95-216 (599)
187 2atx_A Small GTP binding prote 98.4 7.8E-07 2.7E-11 71.2 7.0 57 96-154 17-78 (194)
188 3sjy_A Translation initiation 98.4 7.1E-07 2.4E-11 80.5 7.5 82 1-82 99-191 (403)
189 3izy_P Translation initiation 98.4 4.1E-08 1.4E-12 91.7 -0.7 57 96-153 3-63 (537)
190 2f9l_A RAB11B, member RAS onco 98.4 1.1E-06 3.8E-11 70.9 7.9 58 97-154 5-66 (199)
191 2g6b_A RAS-related protein RAB 98.3 6.6E-07 2.3E-11 70.4 6.4 81 1-81 84-172 (180)
192 3cph_A RAS-related protein SEC 98.3 9.1E-07 3.1E-11 71.7 7.2 83 1-83 93-182 (213)
193 3o47_A ADP-ribosylation factor 98.3 3.3E-07 1.1E-11 80.6 4.7 54 96-153 164-220 (329)
194 1zj6_A ADP-ribosylation factor 98.3 5.7E-07 2E-11 71.6 5.7 81 1-81 84-176 (187)
195 3tw8_B RAS-related protein RAB 98.3 7.2E-07 2.5E-11 70.0 6.2 84 1-84 82-172 (181)
196 2j0v_A RAC-like GTP-binding pr 98.3 4.4E-07 1.5E-11 73.8 4.8 82 1-82 81-179 (212)
197 1moz_A ARL1, ADP-ribosylation 98.3 4.8E-07 1.6E-11 71.5 4.8 82 1-82 86-179 (183)
198 2e87_A Hypothetical protein PH 98.3 3.2E-06 1.1E-10 75.0 10.5 83 1-83 247-336 (357)
199 1oix_A RAS-related protein RAB 98.3 1.6E-06 5.5E-11 69.6 7.9 59 96-154 28-90 (191)
200 2qu8_A Putative nucleolar GTP- 98.3 3.3E-06 1.1E-10 69.7 10.0 82 1-82 109-204 (228)
201 2f7s_A C25KG, RAS-related prot 98.3 1.1E-06 3.7E-11 71.7 6.6 83 1-83 108-199 (217)
202 2h17_A ADP-ribosylation factor 98.3 4.8E-07 1.6E-11 71.8 4.3 78 1-78 89-178 (181)
203 3tr5_A RF-3, peptide chain rel 98.3 9.8E-08 3.3E-12 89.2 0.2 58 97-154 13-94 (528)
204 1zd9_A ADP-ribosylation factor 98.3 6.8E-07 2.3E-11 71.4 5.2 81 1-81 91-183 (188)
205 2a9k_A RAS-related protein RAL 98.3 8.3E-07 2.8E-11 70.1 5.6 82 1-82 90-180 (187)
206 1u8z_A RAS-related protein RAL 98.3 7.6E-07 2.6E-11 68.8 5.2 80 1-80 76-164 (168)
207 2efe_B Small GTP-binding prote 98.3 6.9E-07 2.4E-11 70.3 5.0 81 1-81 85-173 (181)
208 2qag_A Septin-2, protein NEDD5 98.3 6E-07 2E-11 79.9 5.0 59 96-154 36-107 (361)
209 1wb1_A Translation elongation 98.3 3E-07 1E-11 85.0 3.1 57 96-152 18-83 (482)
210 1d2e_A Elongation factor TU (E 98.3 6.1E-07 2.1E-11 80.8 5.0 57 97-153 3-77 (397)
211 1kk1_A EIF2gamma; initiation o 98.3 7.6E-07 2.6E-11 80.5 5.6 41 96-136 9-51 (410)
212 2b6h_A ADP-ribosylation factor 98.3 6.7E-07 2.3E-11 71.9 4.7 80 1-80 97-188 (192)
213 4djt_A GTP-binding nuclear pro 98.3 1.6E-06 5.6E-11 70.7 7.1 83 1-83 85-175 (218)
214 3dpu_A RAB family protein; roc 98.3 2.3E-06 7.8E-11 79.9 8.8 85 67-153 13-109 (535)
215 3geh_A MNME, tRNA modification 98.3 5.1E-07 1.7E-11 83.0 4.2 79 1-81 304-382 (462)
216 1z0f_A RAB14, member RAS oncog 98.2 1.3E-06 4.4E-11 68.5 5.9 79 1-79 88-174 (179)
217 1f60_A Elongation factor EEF1A 98.2 1.8E-07 6.2E-12 85.9 0.8 58 96-153 6-96 (458)
218 3c5h_A Glucocorticoid receptor 98.2 1.6E-06 5.6E-11 73.2 6.7 80 1-80 163-252 (255)
219 1z2a_A RAS-related protein RAB 98.2 1.4E-06 4.8E-11 67.5 5.8 80 1-80 78-164 (168)
220 3th5_A RAS-related C3 botulinu 97.6 1.4E-07 4.8E-12 76.4 0.0 57 96-154 29-90 (204)
221 3kkq_A RAS-related protein M-R 98.2 2.2E-06 7.6E-11 67.7 7.0 81 1-81 90-180 (183)
222 1s0u_A EIF-2-gamma, translatio 98.2 1.4E-06 4.7E-11 78.7 6.5 41 96-136 7-49 (408)
223 1zun_B Sulfate adenylate trans 98.2 9.5E-07 3.3E-11 80.5 5.4 26 96-121 23-48 (434)
224 4dkx_A RAS-related protein RAB 98.2 1.8E-06 6.2E-11 71.3 6.6 59 96-154 12-74 (216)
225 2fu5_C RAS-related protein RAB 98.2 2.7E-06 9.3E-11 67.1 7.4 83 1-83 81-171 (183)
226 3p32_A Probable GTPase RV1496/ 98.2 1.9E-06 6.4E-11 76.5 7.0 80 1-82 193-283 (355)
227 2wkq_A NPH1-1, RAS-related C3 98.2 2.2E-06 7.7E-11 74.3 7.4 57 96-154 154-215 (332)
228 3bwd_D RAC-like GTP-binding pr 98.2 1.2E-06 4.2E-11 68.9 5.1 79 1-79 80-177 (182)
229 2c78_A Elongation factor TU-A; 98.2 5.8E-07 2E-11 81.1 3.6 59 96-154 10-87 (405)
230 1c1y_A RAS-related protein RAP 98.2 2.7E-06 9.4E-11 65.7 6.9 80 1-80 75-164 (167)
231 3gj0_A GTP-binding nuclear pro 98.2 5.7E-07 2E-11 73.7 3.1 80 1-80 88-172 (221)
232 1zo1_I IF2, translation initia 98.2 2.1E-07 7.3E-12 86.2 0.5 59 95-154 2-63 (501)
233 2gf9_A RAS-related protein RAB 98.2 2.7E-06 9.1E-11 67.8 6.8 82 1-82 95-184 (189)
234 2qm8_A GTPase/ATPase; G protei 98.2 1.3E-06 4.6E-11 77.0 5.5 24 96-119 54-77 (337)
235 2elf_A Protein translation elo 98.2 6.7E-07 2.3E-11 79.9 3.6 47 99-154 23-72 (370)
236 3tkl_A RAS-related protein RAB 98.2 2.7E-06 9.1E-11 67.9 6.8 83 1-83 89-179 (196)
237 2y8e_A RAB-protein 6, GH09086P 98.2 1.3E-06 4.6E-11 68.3 4.9 80 1-80 87-174 (179)
238 2atx_A Small GTP binding prote 98.2 2.8E-06 9.5E-11 67.9 6.8 79 1-79 90-189 (194)
239 2a5j_A RAS-related protein RAB 98.2 2.7E-06 9.3E-11 67.9 6.8 81 1-81 94-182 (191)
240 2xex_A Elongation factor G; GT 98.2 1E-06 3.5E-11 84.9 4.8 59 96-154 9-87 (693)
241 2bov_A RAla, RAS-related prote 98.2 3E-06 1E-10 68.2 6.9 82 1-82 86-176 (206)
242 2nzj_A GTP-binding protein REM 98.2 2.6E-06 8.8E-11 66.5 6.3 82 1-82 78-168 (175)
243 1ega_A Protein (GTP-binding pr 98.2 2.4E-06 8.3E-11 74.1 6.7 81 1-82 89-174 (301)
244 1wb1_A Translation elongation 98.2 3.4E-06 1.2E-10 77.9 7.9 82 1-82 97-188 (482)
245 1g16_A RAS-related protein SEC 98.2 2.3E-06 7.7E-11 66.4 5.8 82 1-82 76-164 (170)
246 4dsu_A GTPase KRAS, isoform 2B 98.2 2.8E-06 9.6E-11 67.2 6.5 83 1-83 76-166 (189)
247 3sjy_A Translation initiation 98.2 9.9E-07 3.4E-11 79.6 4.2 27 96-122 7-33 (403)
248 1ky3_A GTP-binding protein YPT 98.2 5.3E-06 1.8E-10 65.0 8.0 81 1-81 82-176 (182)
249 3clv_A RAB5 protein, putative; 98.2 2.7E-06 9.2E-11 67.8 6.3 81 1-81 117-202 (208)
250 1mh1_A RAC1; GTP-binding, GTPa 98.2 1.7E-06 5.9E-11 68.2 4.9 81 1-81 77-178 (186)
251 2yc2_C IFT27, small RAB-relate 98.2 2.2E-06 7.5E-11 69.0 5.6 81 1-81 97-190 (208)
252 1kao_A RAP2A; GTP-binding prot 98.2 1.5E-06 5E-11 67.1 4.4 81 1-81 75-164 (167)
253 2j1l_A RHO-related GTP-binding 98.2 2.9E-06 9.8E-11 69.3 6.3 81 1-81 106-207 (214)
254 1kk1_A EIF2gamma; initiation o 98.2 2E-06 6.7E-11 77.8 5.8 82 1-82 107-199 (410)
255 1fzq_A ADP-ribosylation factor 98.1 2.5E-06 8.6E-11 67.8 5.7 80 1-80 84-175 (181)
256 3q85_A GTP-binding protein REM 98.1 4E-06 1.4E-10 65.1 6.7 80 1-80 76-164 (169)
257 2iwr_A Centaurin gamma 1; ANK 98.1 5.6E-06 1.9E-10 65.0 7.5 78 1-81 73-167 (178)
258 2q3h_A RAS homolog gene family 98.1 2.5E-06 8.6E-11 68.6 5.5 82 1-82 92-194 (201)
259 1r2q_A RAS-related protein RAB 98.1 8.5E-07 2.9E-11 68.8 2.6 80 1-80 79-166 (170)
260 3p32_A Probable GTPase RV1496/ 98.1 1.7E-06 6E-11 76.7 4.9 23 96-118 78-100 (355)
261 2il1_A RAB12; G-protein, GDP, 98.1 2.8E-06 9.7E-11 68.1 5.7 80 1-80 99-187 (192)
262 1z0j_A RAB-22, RAS-related pro 98.1 1.9E-06 6.6E-11 66.8 4.6 80 1-80 79-166 (170)
263 2oil_A CATX-8, RAS-related pro 98.1 3.9E-06 1.3E-10 67.0 6.5 81 1-81 98-186 (193)
264 1vg8_A RAS-related protein RAB 98.1 3.9E-06 1.3E-10 67.6 6.5 82 1-82 81-174 (207)
265 1s0u_A EIF-2-gamma, translatio 98.1 2.3E-06 7.8E-11 77.3 5.5 82 1-82 105-197 (408)
266 3reg_A RHO-like small GTPase; 98.1 2.3E-06 7.9E-11 68.5 5.0 81 1-81 95-186 (194)
267 2gco_A H9, RHO-related GTP-bin 98.1 3.8E-06 1.3E-10 67.8 6.3 80 1-80 97-197 (201)
268 2fn4_A P23, RAS-related protei 98.1 2.6E-06 9E-11 66.8 5.2 82 1-82 81-171 (181)
269 2h5e_A Peptide chain release f 98.1 1.4E-06 4.7E-11 81.4 4.0 58 97-154 13-94 (529)
270 2hup_A RAS-related protein RAB 98.1 4.2E-06 1.4E-10 67.6 6.5 81 1-81 102-191 (201)
271 3q72_A GTP-binding protein RAD 98.1 4E-06 1.4E-10 64.9 6.1 81 1-81 73-162 (166)
272 2hxs_A RAB-26, RAS-related pro 98.1 3.1E-06 1.1E-10 66.3 5.6 81 1-81 80-171 (178)
273 2p67_A LAO/AO transport system 98.1 2.3E-06 8E-11 75.4 5.3 24 96-119 55-78 (341)
274 3con_A GTPase NRAS; structural 98.1 4.7E-06 1.6E-10 66.2 6.6 82 1-82 93-182 (190)
275 2ce2_X GTPase HRAS; signaling 98.1 5.5E-06 1.9E-10 63.6 6.7 80 1-80 75-162 (166)
276 2fg5_A RAB-22B, RAS-related pr 98.1 3E-06 1E-10 67.8 5.3 81 1-81 96-184 (192)
277 2bcg_Y Protein YP2, GTP-bindin 98.1 4.3E-06 1.5E-10 67.5 6.3 82 1-82 81-170 (206)
278 2o52_A RAS-related protein RAB 98.1 3.4E-06 1.2E-10 68.1 5.5 81 1-81 98-186 (200)
279 3dz8_A RAS-related protein RAB 98.1 6.2E-06 2.1E-10 65.8 7.0 81 1-81 96-184 (191)
280 1jny_A EF-1-alpha, elongation 98.1 8.6E-07 2.9E-11 80.8 2.1 59 96-154 5-96 (435)
281 2erx_A GTP-binding protein DI- 98.1 2.4E-06 8.3E-11 66.3 4.3 81 1-81 75-165 (172)
282 3ihw_A Centg3; RAS, centaurin, 98.1 6.2E-06 2.1E-10 65.8 6.8 81 1-81 86-178 (184)
283 1zbd_A Rabphilin-3A; G protein 98.1 5.1E-06 1.7E-10 66.8 6.3 81 1-81 81-169 (203)
284 2gj8_A MNME, tRNA modification 98.1 4.8E-07 1.6E-11 71.5 0.1 76 1-81 84-164 (172)
285 1m2o_B GTP-binding protein SAR 98.1 2.7E-06 9.3E-11 68.2 4.6 78 1-78 91-187 (190)
286 1f6b_A SAR1; gtpases, N-termin 98.1 3.4E-06 1.1E-10 68.1 5.1 78 1-78 93-194 (198)
287 1z08_A RAS-related protein RAB 98.1 2.9E-06 9.9E-11 65.9 4.5 80 1-80 79-166 (170)
288 4gzl_A RAS-related C3 botulinu 98.1 2.8E-06 9.7E-11 68.8 4.5 79 1-79 102-201 (204)
289 2bme_A RAB4A, RAS-related prot 98.1 4.1E-06 1.4E-10 66.2 5.3 81 1-81 83-171 (186)
290 2fv8_A H6, RHO-related GTP-bin 98.1 4.2E-06 1.4E-10 67.8 5.4 81 1-81 97-198 (207)
291 2gf0_A GTP-binding protein DI- 98.0 7.4E-06 2.5E-10 65.4 6.5 81 1-81 80-169 (199)
292 1g7s_A Translation initiation 98.0 1.8E-06 6E-11 81.7 3.1 57 96-154 4-82 (594)
293 1lnz_A SPO0B-associated GTP-bi 98.0 2E-06 7E-11 76.0 3.3 82 1-83 237-330 (342)
294 3q3j_B RHO-related GTP-binding 98.0 6.9E-06 2.4E-10 67.1 6.3 78 1-81 99-201 (214)
295 1wms_A RAB-9, RAB9, RAS-relate 98.0 1.1E-05 3.8E-10 63.1 7.0 80 1-80 80-171 (177)
296 3th5_A RAS-related C3 botulinu 97.3 7.4E-07 2.5E-11 72.1 0.0 78 1-78 102-200 (204)
297 2p5s_A RAS and EF-hand domain 98.0 5.3E-06 1.8E-10 66.8 5.1 80 1-80 101-194 (199)
298 3cbq_A GTP-binding protein REM 98.0 1.6E-05 5.6E-10 63.9 8.0 81 1-81 97-186 (195)
299 1z06_A RAS-related protein RAB 98.0 6.6E-06 2.2E-10 65.5 5.4 77 1-77 94-182 (189)
300 2atv_A RERG, RAS-like estrogen 98.0 5.9E-06 2E-10 66.2 5.1 81 1-81 99-189 (196)
301 1ek0_A Protein (GTP-binding pr 98.0 3.8E-06 1.3E-10 65.1 3.8 79 1-79 76-165 (170)
302 1zun_B Sulfate adenylate trans 98.0 8.2E-06 2.8E-10 74.3 6.5 72 1-72 128-213 (434)
303 2ew1_A RAS-related protein RAB 98.0 5.9E-06 2E-10 67.0 5.1 81 1-81 99-187 (201)
304 3cpj_B GTP-binding protein YPT 98.0 3.2E-06 1.1E-10 69.5 3.5 81 1-81 86-174 (223)
305 3oes_A GTPase rhebl1; small GT 98.0 6.5E-06 2.2E-10 66.3 5.1 83 1-83 96-187 (201)
306 3o47_A ADP-ribosylation factor 98.0 6.4E-06 2.2E-10 72.3 5.3 81 1-81 233-325 (329)
307 1r5b_A Eukaryotic peptide chai 98.0 2E-06 6.8E-11 79.2 2.1 59 96-154 42-133 (467)
308 3iby_A Ferrous iron transport 98.0 8.5E-07 2.9E-11 75.2 -0.5 74 1-79 84-163 (256)
309 1dar_A EF-G, elongation factor 97.9 4.7E-06 1.6E-10 80.2 4.3 58 97-154 12-89 (691)
310 3p26_A Elongation factor 1 alp 97.9 1.7E-05 6E-10 73.1 7.9 72 1-72 135-227 (483)
311 3lvq_E ARF-GAP with SH3 domain 97.9 6.8E-06 2.3E-10 75.9 4.7 83 1-83 390-484 (497)
312 2rdo_7 EF-G, elongation factor 97.9 2E-05 6.7E-10 76.1 8.0 59 96-154 9-94 (704)
313 3t5d_A Septin-7; GTP-binding p 97.9 6.8E-06 2.3E-10 70.0 4.3 80 1-80 116-201 (274)
314 3sop_A Neuronal-specific septi 97.9 7.7E-06 2.6E-10 69.8 4.6 58 98-155 3-73 (270)
315 3a1s_A Iron(II) transport prot 97.9 2.2E-06 7.4E-11 72.7 1.1 76 1-81 84-165 (258)
316 2qnr_A Septin-2, protein NEDD5 97.9 7.1E-06 2.4E-10 71.1 4.3 57 97-153 18-87 (301)
317 1g7s_A Translation initiation 97.9 2.9E-05 1E-09 73.4 8.8 82 1-82 94-217 (594)
318 2wkq_A NPH1-1, RAS-related C3 97.9 1.1E-05 3.7E-10 69.9 5.2 80 1-80 227-327 (332)
319 1udx_A The GTP-binding protein 97.9 1.5E-05 5.2E-10 72.1 6.2 83 1-83 236-325 (416)
320 2qag_C Septin-7; cell cycle, c 97.9 7.7E-06 2.6E-10 74.1 4.2 59 96-155 30-101 (418)
321 3j2k_7 ERF3, eukaryotic polype 97.9 4.2E-05 1.4E-09 69.7 9.0 75 1-75 119-217 (439)
322 1tq4_A IIGP1, interferon-induc 97.9 3.8E-05 1.3E-09 69.4 8.6 59 97-155 69-133 (413)
323 3avx_A Elongation factor TS, e 97.9 7.9E-06 2.7E-10 82.0 4.4 59 95-153 294-370 (1289)
324 3tr5_A RF-3, peptide chain rel 97.9 2.6E-05 8.8E-10 72.8 7.6 41 1-41 106-148 (528)
325 2qag_B Septin-6, protein NEDD5 97.9 1.8E-05 6.3E-10 71.7 6.4 57 98-154 43-107 (427)
326 3i8s_A Ferrous iron transport 97.9 1.1E-06 3.6E-11 75.3 -1.9 75 1-80 86-166 (274)
327 3qq5_A Small GTP-binding prote 97.8 3.5E-06 1.2E-10 76.5 1.5 79 1-82 114-195 (423)
328 2cxx_A Probable GTP-binding pr 97.8 4.5E-05 1.5E-09 60.2 7.8 83 1-83 83-184 (190)
329 3c5c_A RAS-like protein 12; GD 97.8 1.1E-05 3.9E-10 64.2 4.0 80 1-80 92-183 (187)
330 2fh5_B SR-beta, signal recogni 97.8 1.2E-05 4.2E-10 65.2 4.2 79 1-79 79-212 (214)
331 2wsm_A Hydrogenase expression/ 97.8 2.3E-06 8E-11 70.0 -0.3 24 97-120 30-53 (221)
332 3llu_A RAS-related GTP-binding 97.8 3.4E-05 1.2E-09 61.8 6.7 77 1-78 96-192 (196)
333 2www_A Methylmalonic aciduria 97.8 5.2E-05 1.8E-09 67.0 8.4 79 1-81 188-277 (349)
334 3dpu_A RAB family protein; roc 97.8 1.5E-05 5E-10 74.5 4.9 81 1-83 122-208 (535)
335 2c78_A Elongation factor TU-A; 97.8 1.6E-05 5.5E-10 71.6 4.4 69 1-69 99-180 (405)
336 2j37_W Signal recognition part 97.8 1.9E-05 6.5E-10 73.2 4.9 31 96-126 100-136 (504)
337 3k53_A Ferrous iron transport 97.7 3.7E-06 1.3E-10 71.5 -0.2 76 1-81 82-164 (271)
338 3cb4_D GTP-binding protein LEP 97.7 1.2E-05 4.1E-10 76.1 3.1 58 97-154 4-83 (599)
339 2wji_A Ferrous iron transport 97.7 5E-06 1.7E-10 64.9 0.4 74 1-79 82-161 (165)
340 2p67_A LAO/AO transport system 97.7 5E-05 1.7E-09 66.8 7.0 79 1-81 170-259 (341)
341 1m7b_A RND3/RHOE small GTP-bin 97.7 2.3E-05 7.8E-10 62.1 4.2 80 1-80 79-180 (184)
342 2ywe_A GTP-binding protein LEP 97.7 4.8E-05 1.6E-09 71.9 6.7 81 1-82 97-183 (600)
343 3l0i_B RAS-related protein RAB 97.7 3.4E-06 1.2E-10 67.9 -1.0 79 1-79 106-192 (199)
344 1gwn_A RHO-related GTP-binding 97.7 2.6E-05 8.8E-10 63.3 4.2 80 1-80 100-201 (205)
345 2hf9_A Probable hydrogenase ni 97.7 3.9E-05 1.3E-09 62.8 5.3 24 97-120 38-61 (226)
346 1n0u_A EF-2, elongation factor 97.7 2E-05 6.8E-10 77.5 3.8 24 97-120 19-42 (842)
347 4dkx_A RAS-related protein RAB 97.7 5.4E-05 1.8E-09 62.4 5.8 79 1-79 86-172 (216)
348 3c5h_A Glucocorticoid receptor 97.7 1.9E-05 6.4E-10 66.6 3.0 26 95-120 17-51 (255)
349 3b1v_A Ferrous iron uptake tra 97.7 1.8E-05 6E-10 67.7 2.8 75 1-80 81-161 (272)
350 2ywe_A GTP-binding protein LEP 97.7 1.6E-05 5.4E-10 75.2 2.6 58 97-154 6-85 (600)
351 3zvr_A Dynamin-1; hydrolase, D 97.6 3.3E-05 1.1E-09 74.8 4.7 79 1-79 188-274 (772)
352 3r7w_B Gtpase2, GTP-binding pr 97.6 4.5E-05 1.5E-09 66.8 4.9 57 99-155 1-59 (331)
353 1yrb_A ATP(GTP)binding protein 97.6 1.1E-05 3.9E-10 67.6 1.0 35 96-130 13-52 (262)
354 1yrb_A ATP(GTP)binding protein 97.6 8.9E-05 3E-09 62.1 6.6 82 2-83 139-257 (262)
355 2g3y_A GTP-binding protein GEM 97.6 9.5E-05 3.3E-09 60.6 6.4 81 1-81 112-201 (211)
356 2qtf_A Protein HFLX, GTP-bindi 97.6 6.8E-05 2.3E-09 66.7 5.8 83 1-83 258-354 (364)
357 2elf_A Protein translation elo 97.6 0.00017 5.8E-09 64.2 8.3 81 1-83 84-180 (370)
358 1d2e_A Elongation factor TU (E 97.6 6.3E-05 2.2E-09 67.6 5.4 81 1-81 90-193 (397)
359 2wjg_A FEOB, ferrous iron tran 97.6 9.7E-06 3.3E-10 64.2 -0.0 78 1-83 86-169 (188)
360 3izq_1 HBS1P, elongation facto 97.6 5.2E-05 1.8E-09 71.9 4.8 73 1-73 269-362 (611)
361 2wsm_A Hydrogenase expression/ 97.6 5.9E-05 2E-09 61.4 4.5 76 2-81 131-212 (221)
362 3avx_A Elongation factor TS, e 97.5 0.00021 7.2E-09 71.9 9.0 80 1-80 383-483 (1289)
363 3mca_A HBS1, elongation factor 97.5 4.8E-05 1.7E-09 71.9 3.9 71 1-71 279-371 (592)
364 2zej_A Dardarin, leucine-rich 97.5 6E-05 2E-09 59.7 3.8 81 1-81 80-176 (184)
365 1jny_A EF-1-alpha, elongation 97.5 0.00011 3.8E-09 66.8 6.0 72 1-72 108-202 (435)
366 2dy1_A Elongation factor G; tr 97.5 9E-05 3.1E-09 71.0 5.4 59 96-154 8-86 (665)
367 2qag_A Septin-2, protein NEDD5 97.4 0.00013 4.5E-09 64.7 5.2 80 1-80 146-231 (361)
368 1r5b_A Eukaryotic peptide chai 97.4 0.00018 6.3E-09 66.0 6.3 73 1-73 145-242 (467)
369 3r7w_A Gtpase1, GTP-binding pr 97.4 0.00017 5.9E-09 62.4 5.7 70 1-71 81-169 (307)
370 2aka_B Dynamin-1; fusion prote 97.4 3.8E-05 1.3E-09 65.7 1.4 78 2-79 164-249 (299)
371 2j69_A Bacterial dynamin-like 97.4 0.00019 6.6E-09 69.1 6.4 81 1-81 201-323 (695)
372 1pui_A ENGB, probable GTP-bind 97.4 0.00038 1.3E-08 55.9 7.1 83 1-83 109-199 (210)
373 2cjw_A GTP-binding protein GEM 97.4 0.0004 1.4E-08 55.5 6.9 81 1-81 81-170 (192)
374 3izy_P Translation initiation 97.4 1.7E-05 6E-10 74.0 -1.4 114 1-114 76-211 (537)
375 1jwy_B Dynamin A GTPase domain 97.3 0.00051 1.7E-08 59.1 7.4 81 1-83 168-262 (315)
376 4ido_A Atlastin-1; GTPase, GTP 97.3 0.00071 2.4E-08 61.6 8.2 61 98-158 68-156 (457)
377 3lxx_A GTPase IMAP family memb 97.3 0.0004 1.4E-08 57.5 6.0 80 1-81 113-212 (239)
378 3vqt_A RF-3, peptide chain rel 97.2 0.00068 2.3E-08 63.4 8.1 120 99-224 33-179 (548)
379 1f60_A Elongation factor EEF1A 97.2 0.00012 4.2E-09 67.0 2.9 72 1-72 109-201 (458)
380 1wxq_A GTP-binding protein; st 97.2 0.00023 7.9E-09 64.0 4.5 47 27-73 214-260 (397)
381 1zo1_I IF2, translation initia 97.2 7.7E-05 2.6E-09 69.1 1.1 78 1-78 75-162 (501)
382 1ko7_A HPR kinase/phosphatase; 97.2 0.00034 1.2E-08 60.8 5.1 96 21-121 73-168 (314)
383 2hf9_A Probable hydrogenase ni 97.2 0.00067 2.3E-08 55.2 6.6 78 2-81 141-222 (226)
384 2v3c_C SRP54, signal recogniti 97.2 0.00013 4.5E-09 66.3 2.2 23 97-119 99-121 (432)
385 2qm8_A GTPase/ATPase; G protei 97.1 0.00079 2.7E-08 59.1 6.9 80 1-82 169-260 (337)
386 3lxw_A GTPase IMAP family memb 97.1 0.00038 1.3E-08 58.3 4.4 82 1-83 106-208 (247)
387 2xtp_A GTPase IMAP family memb 97.0 0.00028 9.4E-09 59.2 2.3 81 1-83 106-208 (260)
388 3ney_A 55 kDa erythrocyte memb 96.9 0.0005 1.7E-08 55.8 3.2 55 98-152 20-76 (197)
389 2xex_A Elongation factor G; GT 96.8 0.002 6.7E-08 62.0 6.9 42 1-42 99-142 (693)
390 1dar_A EF-G, elongation factor 96.8 0.0021 7.1E-08 61.8 7.0 41 1-41 101-143 (691)
391 2f9l_A RAB11B, member RAS onco 96.8 0.0024 8.1E-08 51.0 6.2 82 1-82 78-167 (199)
392 3dm5_A SRP54, signal recogniti 96.7 0.0043 1.5E-07 56.4 8.4 23 96-118 99-121 (443)
393 2dy1_A Elongation factor G; tr 96.7 0.0022 7.5E-08 61.4 6.4 40 1-40 98-139 (665)
394 2x2e_A Dynamin-1; nitration, h 96.6 0.00023 8E-09 62.7 -0.7 79 1-79 168-254 (353)
395 3szr_A Interferon-induced GTP- 96.6 0.0028 9.7E-08 60.0 6.5 23 99-121 47-69 (608)
396 1kgd_A CASK, peripheral plasma 96.6 0.0011 3.8E-08 52.4 2.9 36 99-134 7-43 (180)
397 2h5e_A Peptide chain release f 96.6 0.0024 8.1E-08 59.5 5.4 43 1-43 106-150 (529)
398 1nrj_B SR-beta, signal recogni 96.4 0.002 7E-08 51.9 3.7 69 1-69 83-170 (218)
399 1cip_A Protein (guanine nucleo 96.4 0.0014 4.9E-08 57.9 3.0 80 1-80 217-341 (353)
400 3j25_A Tetracycline resistance 96.4 0.0024 8.2E-08 60.8 4.7 57 99-155 4-80 (638)
401 4fn5_A EF-G 1, elongation fact 96.4 0.011 3.6E-07 57.1 9.2 21 98-118 14-34 (709)
402 1ye8_A Protein THEP1, hypothet 96.4 0.0019 6.6E-08 51.3 3.2 23 99-121 2-24 (178)
403 2qpt_A EH domain-containing pr 96.4 0.0026 9E-08 59.5 4.6 52 1-52 189-243 (550)
404 2ged_A SR-beta, signal recogni 96.3 0.0015 5E-08 51.6 2.3 52 1-52 119-181 (193)
405 2qag_C Septin-7; cell cycle, c 96.3 0.0028 9.6E-08 57.3 4.3 73 1-73 139-217 (418)
406 2qor_A Guanylate kinase; phosp 96.3 0.0016 5.4E-08 52.5 2.2 26 96-121 11-36 (204)
407 2rdo_7 EF-G, elongation factor 96.2 0.012 4.2E-07 56.6 8.5 41 1-41 106-148 (704)
408 1zp6_A Hypothetical protein AT 96.2 0.0031 1.1E-07 49.8 3.7 24 97-120 9-32 (191)
409 3tau_A Guanylate kinase, GMP k 96.2 0.0034 1.2E-07 50.8 4.0 25 97-121 8-32 (208)
410 2qnr_A Septin-2, protein NEDD5 96.2 0.0051 1.7E-07 53.0 5.0 51 27-78 155-209 (301)
411 1lvg_A Guanylate kinase, GMP k 96.1 0.0025 8.6E-08 51.3 2.6 22 99-120 6-27 (198)
412 3vqt_A RF-3, peptide chain rel 96.1 0.01 3.5E-07 55.5 6.8 40 1-40 124-165 (548)
413 1zcb_A G alpha I/13; GTP-bindi 96.0 0.0047 1.6E-07 54.7 4.3 81 1-81 225-351 (362)
414 3c8u_A Fructokinase; YP_612366 95.9 0.0046 1.6E-07 49.9 3.4 25 96-120 21-45 (208)
415 1j8m_F SRP54, signal recogniti 95.9 0.0025 8.6E-08 54.9 1.7 22 97-118 98-119 (297)
416 1kag_A SKI, shikimate kinase I 95.8 0.0043 1.5E-07 48.2 2.8 23 98-120 5-27 (173)
417 3kl4_A SRP54, signal recogniti 95.8 0.007 2.4E-07 54.9 4.5 23 96-118 96-118 (433)
418 3tr0_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 48.7 3.5 23 98-120 8-30 (205)
419 1oix_A RAS-related protein RAB 95.8 0.012 3.9E-07 46.7 5.2 79 1-79 102-188 (191)
420 2j41_A Guanylate kinase; GMP, 95.8 0.006 2E-07 48.7 3.5 25 97-121 6-30 (207)
421 1znw_A Guanylate kinase, GMP k 95.8 0.0049 1.7E-07 49.7 2.9 23 99-121 22-44 (207)
422 2xxa_A Signal recognition part 95.7 0.0082 2.8E-07 54.4 4.6 23 96-118 99-121 (433)
423 1ly1_A Polynucleotide kinase; 95.7 0.0071 2.4E-07 47.0 3.6 22 98-119 3-24 (181)
424 2rhm_A Putative kinase; P-loop 95.7 0.0075 2.6E-07 47.5 3.6 24 96-119 4-27 (193)
425 1np6_A Molybdopterin-guanine d 95.7 0.0059 2E-07 48.3 2.9 22 99-120 8-29 (174)
426 1ex7_A Guanylate kinase; subst 95.6 0.0052 1.8E-07 49.3 2.5 36 100-135 4-40 (186)
427 3asz_A Uridine kinase; cytidin 95.6 0.0066 2.3E-07 48.8 3.2 24 97-120 6-29 (211)
428 4eun_A Thermoresistant glucoki 95.6 0.0071 2.4E-07 48.4 3.4 24 97-120 29-52 (200)
429 3t34_A Dynamin-related protein 95.6 0.0033 1.1E-07 55.4 1.4 74 1-76 173-254 (360)
430 1s96_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 50.0 2.9 25 97-121 16-40 (219)
431 1z6g_A Guanylate kinase; struc 95.6 0.006 2.1E-07 49.8 2.9 23 99-121 25-47 (218)
432 2bdt_A BH3686; alpha-beta prot 95.6 0.0063 2.2E-07 48.1 2.9 21 99-119 4-24 (189)
433 2v54_A DTMP kinase, thymidylat 95.6 0.0089 3.1E-07 47.6 3.8 24 97-120 4-27 (204)
434 3a00_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 48.2 2.9 22 100-121 4-25 (186)
435 2bbw_A Adenylate kinase 4, AK4 95.5 0.0083 2.8E-07 49.7 3.6 22 97-118 27-48 (246)
436 3lw7_A Adenylate kinase relate 95.5 0.0079 2.7E-07 46.2 3.2 19 99-117 3-21 (179)
437 3cm0_A Adenylate kinase; ATP-b 95.5 0.009 3.1E-07 46.9 3.6 23 97-119 4-26 (186)
438 1cke_A CK, MSSA, protein (cyti 95.5 0.0086 2.9E-07 48.6 3.5 24 97-120 5-28 (227)
439 2qag_B Septin-6, protein NEDD5 95.5 0.0071 2.4E-07 54.7 3.2 62 3-64 151-217 (427)
440 1knq_A Gluconate kinase; ALFA/ 95.5 0.0096 3.3E-07 46.3 3.6 23 97-119 8-30 (175)
441 4gp7_A Metallophosphoesterase; 95.4 0.0079 2.7E-07 47.1 3.0 21 98-118 10-30 (171)
442 3uie_A Adenylyl-sulfate kinase 95.4 0.01 3.5E-07 47.5 3.6 24 97-120 25-48 (200)
443 3kb2_A SPBC2 prophage-derived 95.4 0.0086 2.9E-07 46.2 3.1 22 99-120 3-24 (173)
444 2if2_A Dephospho-COA kinase; a 95.4 0.0083 2.8E-07 47.9 2.9 21 99-119 3-23 (204)
445 2jaq_A Deoxyguanosine kinase; 95.3 0.0095 3.3E-07 47.3 3.2 21 99-119 2-22 (205)
446 3tif_A Uncharacterized ABC tra 95.3 0.009 3.1E-07 49.5 3.0 23 99-121 33-55 (235)
447 2pcj_A ABC transporter, lipopr 95.3 0.0084 2.9E-07 49.3 2.8 23 99-121 32-54 (224)
448 1qhx_A CPT, protein (chloramph 95.3 0.012 4.1E-07 45.8 3.5 23 98-120 4-26 (178)
449 1kht_A Adenylate kinase; phosp 95.3 0.011 3.9E-07 46.3 3.4 22 98-119 4-25 (192)
450 2plr_A DTMP kinase, probable t 95.3 0.013 4.4E-07 46.8 3.7 23 97-119 4-26 (213)
451 1azs_C GS-alpha; complex (lyas 95.2 0.014 4.6E-07 52.5 4.1 24 58-81 360-383 (402)
452 2cbz_A Multidrug resistance-as 95.2 0.011 3.7E-07 49.1 3.3 23 99-121 33-55 (237)
453 1nn5_A Similar to deoxythymidy 95.2 0.011 3.9E-07 47.3 3.3 24 96-119 8-31 (215)
454 2yvu_A Probable adenylyl-sulfa 95.2 0.014 4.9E-07 45.9 3.8 24 96-119 12-35 (186)
455 1y63_A LMAJ004144AAA protein; 95.2 0.014 4.9E-07 46.0 3.8 25 96-120 9-33 (184)
456 2i3b_A HCR-ntpase, human cance 95.2 0.01 3.5E-07 47.5 3.0 22 99-120 3-24 (189)
457 2v9p_A Replication protein E1; 95.2 0.011 3.8E-07 51.1 3.3 23 97-119 126-148 (305)
458 1jjv_A Dephospho-COA kinase; P 95.2 0.013 4.4E-07 46.9 3.5 22 98-119 3-24 (206)
459 3j25_A Tetracycline resistance 95.2 0.01 3.5E-07 56.5 3.3 40 1-40 91-132 (638)
460 2qt1_A Nicotinamide riboside k 95.2 0.013 4.6E-07 46.9 3.6 25 96-120 20-44 (207)
461 2onk_A Molybdate/tungstate ABC 95.2 0.011 3.8E-07 49.2 3.1 23 99-121 26-48 (240)
462 1mv5_A LMRA, multidrug resista 95.2 0.012 4.1E-07 49.0 3.3 24 98-121 29-52 (243)
463 3t61_A Gluconokinase; PSI-biol 95.2 0.011 3.6E-07 47.3 2.9 24 97-120 18-41 (202)
464 2wwf_A Thymidilate kinase, put 95.1 0.012 4.1E-07 47.1 3.2 24 96-119 9-32 (212)
465 2f1r_A Molybdopterin-guanine d 95.1 0.0055 1.9E-07 48.4 1.1 22 99-120 4-25 (171)
466 3l82_B F-box only protein 4; T 95.1 0.052 1.8E-06 44.5 6.9 76 1-76 126-216 (227)
467 3vaa_A Shikimate kinase, SK; s 95.1 0.013 4.5E-07 46.8 3.4 22 98-119 26-47 (199)
468 1tev_A UMP-CMP kinase; ploop, 95.1 0.015 5.1E-07 45.7 3.6 23 97-119 3-25 (196)
469 2cdn_A Adenylate kinase; phosp 95.1 0.015 5.3E-07 46.3 3.7 24 96-119 19-42 (201)
470 1g6h_A High-affinity branched- 95.1 0.011 3.9E-07 49.5 3.0 23 99-121 35-57 (257)
471 1b0u_A Histidine permease; ABC 95.1 0.012 4E-07 49.7 3.1 23 99-121 34-56 (262)
472 1nks_A Adenylate kinase; therm 95.1 0.013 4.5E-07 45.9 3.2 21 99-119 3-23 (194)
473 2ff7_A Alpha-hemolysin translo 95.1 0.013 4.4E-07 49.0 3.3 23 99-121 37-59 (247)
474 2xtz_A Guanine nucleotide-bind 95.1 0.015 5.2E-07 51.3 3.9 23 58-80 320-342 (354)
475 1sgw_A Putative ABC transporte 95.0 0.013 4.3E-07 48.0 3.1 23 99-121 37-59 (214)
476 1aky_A Adenylate kinase; ATP:A 95.0 0.015 5.1E-07 47.1 3.5 23 97-119 4-26 (220)
477 2pze_A Cystic fibrosis transme 95.0 0.014 4.7E-07 48.1 3.3 22 99-120 36-57 (229)
478 3aez_A Pantothenate kinase; tr 95.0 0.015 5.2E-07 50.3 3.7 26 95-120 88-113 (312)
479 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.016 5.5E-07 48.5 3.7 23 97-119 4-26 (260)
480 4g1u_C Hemin import ATP-bindin 95.0 0.014 4.8E-07 49.3 3.3 23 99-121 39-61 (266)
481 3r7w_B Gtpase2, GTP-binding pr 95.0 0.023 7.8E-07 49.6 4.7 42 1-43 73-122 (331)
482 1vht_A Dephospho-COA kinase; s 95.0 0.017 6E-07 46.6 3.7 23 97-119 4-26 (218)
483 3gfo_A Cobalt import ATP-bindi 94.9 0.014 4.6E-07 49.7 3.1 23 99-121 36-58 (275)
484 2ghi_A Transport protein; mult 94.9 0.015 5E-07 49.0 3.3 22 99-120 48-69 (260)
485 2qi9_C Vitamin B12 import ATP- 94.9 0.015 5.2E-07 48.6 3.3 23 99-121 28-50 (249)
486 2d2e_A SUFC protein; ABC-ATPas 94.9 0.015 5.3E-07 48.5 3.3 22 99-120 31-52 (250)
487 2olj_A Amino acid ABC transpor 94.9 0.015 5.3E-07 49.0 3.3 23 99-121 52-74 (263)
488 2pez_A Bifunctional 3'-phospho 94.9 0.018 6.2E-07 45.0 3.6 23 97-119 5-27 (179)
489 3ohm_A Guanine nucleotide-bind 94.9 0.018 6.1E-07 50.3 3.7 80 1-80 191-315 (327)
490 1uf9_A TT1252 protein; P-loop, 94.9 0.018 6.1E-07 45.7 3.5 25 96-120 7-31 (203)
491 2c95_A Adenylate kinase 1; tra 94.9 0.017 5.8E-07 45.5 3.4 23 97-119 9-31 (196)
492 1ji0_A ABC transporter; ATP bi 94.9 0.016 5.4E-07 48.1 3.3 23 99-121 34-56 (240)
493 2zu0_C Probable ATP-dependent 94.9 0.016 5.6E-07 48.9 3.4 22 99-120 48-69 (267)
494 1vpl_A ABC transporter, ATP-bi 94.8 0.015 5.1E-07 48.9 3.1 23 99-121 43-65 (256)
495 3b85_A Phosphate starvation-in 94.8 0.013 4.4E-07 47.7 2.5 22 99-120 24-45 (208)
496 1zd8_A GTP:AMP phosphotransfer 94.8 0.016 5.4E-07 47.3 3.1 23 97-119 7-29 (227)
497 2ixe_A Antigen peptide transpo 94.8 0.016 5.5E-07 49.1 3.3 23 99-121 47-69 (271)
498 3fb4_A Adenylate kinase; psych 94.8 0.017 5.8E-07 46.5 3.3 21 99-119 2-22 (216)
499 2p5t_B PEZT; postsegregational 94.8 0.029 9.8E-07 46.7 4.7 26 95-120 30-55 (253)
500 2pt5_A Shikimate kinase, SK; a 94.8 0.019 6.4E-07 44.2 3.3 21 99-119 2-22 (168)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-54 Score=375.25 Aligned_cols=252 Identities=34% Similarity=0.573 Sum_probs=215.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|+|++|+|||+|.+++++.+.++++++|+++|+||+||++++..+.|.+|+++.+.+++++|++++.|+++|.+.+.++
T Consensus 24 aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 24 IDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp CSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred CCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999888899999998778889999999999999999988887
Q ss_pred HhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCCCcH
Q 025200 81 ASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~ 160 (256)
..........++...++++|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.++.++||||+.++...+.
T Consensus 104 l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 104 LQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCCCSCCCCH
T ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCCCCH
Confidence 76544333344555678999999999999999999999999899999999999999998988999999999999998888
Q ss_pred HHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHHh----cCC--cHHHHH
Q 025200 161 AAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNG--DTHQAA 234 (256)
Q Consensus 161 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~~----~~~--D~~~aa 234 (256)
+.+.++++++++.+..++..+++.++++.+.++ +++.|..+|+++....+..+|++.+|+++ +|| |+++||
T Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~~~a~~~g~~~kgg~~d~~~aa 260 (282)
T 1puj_A 184 LVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKTT 260 (282)
T ss_dssp HHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHHHHHHHHTCBCSTTCBCHHHHH
T ss_pred HHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh---ChHHHHHHcCCCCCCCCHHHHHHHHHHHhCCcccCCcccHHHHH
Confidence 888999999999999999999999999999987 78899999999744456789999999874 455 999999
Q ss_pred HHHHHHHHcCCCCceecccCC
Q 025200 235 FRILTDFRKGKFGWISLERPP 255 (256)
Q Consensus 235 ~~~l~d~~~G~l~~~~l~~p~ 255 (256)
+.||+|||+||||+||||.|+
T Consensus 261 ~~~l~d~~~Gklg~~~l~~~~ 281 (282)
T 1puj_A 261 EVIIRDIRTEKFGRLSFEQPT 281 (282)
T ss_dssp HHHHHHHHTTTTCSCCSCCCC
T ss_pred HHHHHHHHcCCCCceECCCCC
Confidence 999999999999999999986
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=2.3e-46 Score=322.38 Aligned_cols=221 Identities=29% Similarity=0.487 Sum_probs=180.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|+|++|+|||+|.+++++.+. ++ ++|.++|+||+||++++..+.|.+++++.|.++ ++|++++.|+++|.+.+.+.
T Consensus 22 ~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 22 VNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp CSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 6999999999999999998887 77 899999999999999888899999998888888 99999999988776654322
Q ss_pred HhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCC-Cc
Q 025200 81 ASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI-SD 159 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~-~~ 159 (256)
. ++++++|.||||||||||+|.+...+.+++.||+|++.+++.++.++.++||||+.++.+ .+
T Consensus 99 ~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 162 (262)
T 3cnl_A 99 L----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSE 162 (262)
T ss_dssp T----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCCCCCSH
T ss_pred h----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccCcCCCC
Confidence 1 579999999999999999999998888999999999999999888999999999999988 76
Q ss_pred HHHHHHHHHhccccccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHHh----cCC--cHHHH
Q 025200 160 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL----FNG--DTHQA 233 (256)
Q Consensus 160 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~~----~~~--D~~~a 233 (256)
.+.+ .+..++.++++.++++.++++ +++.|..+|+++. .+ .+|++.+|+++ ++| |+++|
T Consensus 163 ~~~~---------~~~~~d~~~~~~~~~~~l~~~---~~~~l~~~y~i~~--~d-~~~l~~ia~~~g~~~kgg~~d~~~a 227 (262)
T 3cnl_A 163 DLAA---------KLLLVGSLPVERIEDQRIFER---AFEIFARSIGIES--SF-SEFFEDFARKRGLLKKGGVPDIERA 227 (262)
T ss_dssp HHHH---------HHHHTTSSCGGGCCCHHHHHH---HHHHHHHHHTCCC--CH-HHHHHHHHHHTTCBCGGGCBCHHHH
T ss_pred hhhc---------ccccCCHHHHHHHHHHHHHHh---CHHHHHHHcCcCC--Cc-HHHHHHHHHHhCCccCCCcccHHHH
Confidence 6554 223445666777777777775 6788999999984 23 78999999875 355 99999
Q ss_pred HHHHHHHHHcCCCCceecccCC
Q 025200 234 AFRILTDFRKGKFGWISLERPP 255 (256)
Q Consensus 234 a~~~l~d~~~G~l~~~~l~~p~ 255 (256)
|+.||+|||+|++|+||||.|+
T Consensus 228 a~~~l~d~~~g~l~~~~l~~~~ 249 (262)
T 3cnl_A 228 LMLFFTEVAQGKAGRVSFERPE 249 (262)
T ss_dssp HHHHHHHHHTTTTCSCCSCCTT
T ss_pred HHHHHHHHHcCCCCceECCCCc
Confidence 9999999999999999999875
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.94 E-value=1.1e-26 Score=208.83 Aligned_cols=142 Identities=22% Similarity=0.326 Sum_probs=122.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCCh----HHHHHHHHH-HHHcCC---eEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---KVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~-~~~~~~---~vi~~sa~~~~g~~~ 72 (256)
+|+|++|+|+++|.+++.+.+.+++.++|+++|+||+||+++ +...+|... +++.|. .++++||++|.|+++
T Consensus 72 ~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~ 151 (369)
T 3ec1_A 72 KALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK 151 (369)
T ss_dssp CCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHH
T ss_pred CcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHH
Confidence 479999999999999999999999889999999999999876 346678664 455564 688999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcC-----CCcccCCCCCceeeeEEEEeCCcEEEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFGKDLEFL 147 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~-----~~~~~~~~~g~T~~~~~~~~~~~~~l~ 147 (256)
|.+.+.++.. ..+|+++|.||||||||+|+|.+. ..+.+++.||+|++...+.++.++.++
T Consensus 152 L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~li 217 (369)
T 3ec1_A 152 VMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLY 217 (369)
T ss_dssp HHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEE
T ss_pred HHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEE
Confidence 9888776542 135899999999999999999987 567889999999999998888889999
Q ss_pred ecCCCCCCC
Q 025200 148 DSPGIIPMR 156 (256)
Q Consensus 148 DtPGi~~~~ 156 (256)
||||+..+.
T Consensus 218 DtPG~~~~~ 226 (369)
T 3ec1_A 218 DTPGIINHH 226 (369)
T ss_dssp ECCSCCCCS
T ss_pred eCCCcCcHH
Confidence 999998653
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.93 E-value=4.5e-26 Score=204.73 Aligned_cols=142 Identities=27% Similarity=0.407 Sum_probs=116.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChH----HHHHHHHH-HHHcCC---eEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~~-~~~~~~---~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+++|..++.+.+.+++.++|+++|+||+||++++ ...+|..+ +++.|. .++++||++|.|+++
T Consensus 70 ~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~ 149 (368)
T 3h2y_A 70 DALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAE 149 (368)
T ss_dssp CCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHH
T ss_pred CcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHH
Confidence 3799999999999888889998888899999999999998754 46678665 455565 788999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCC------CcccCCCCCceeeeEEEEeCCcEEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKWVRFGKDLEF 146 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~------~~~~~~~~g~T~~~~~~~~~~~~~l 146 (256)
|.+.+.++.. ..+|+++|.||||||||+|+|.+.. ...+++.||+|++.+.+.++.++.+
T Consensus 150 L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~l 215 (368)
T 3h2y_A 150 LADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSL 215 (368)
T ss_dssp HHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEE
T ss_pred HHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEE
Confidence 9888766532 2358999999999999999999853 4557899999999999988888999
Q ss_pred EecCCCCCCC
Q 025200 147 LDSPGIIPMR 156 (256)
Q Consensus 147 ~DtPGi~~~~ 156 (256)
+||||+..+.
T Consensus 216 iDtPG~~~~~ 225 (368)
T 3h2y_A 216 YDTPGIINHH 225 (368)
T ss_dssp EECCCBCCTT
T ss_pred EeCCCcCcHH
Confidence 9999998764
No 5
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.88 E-value=2.4e-23 Score=182.21 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=104.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHH----HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|+|++|+|++.|..+.+ .+++++ .++|.++|+||+||++++. ++.|.++|++.|.+++++|+.++.|++
T Consensus 87 vD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~ 165 (307)
T 1t9h_A 87 VDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLA 165 (307)
T ss_dssp CCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCT
T ss_pred CCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHH
Confidence 699999999999999876 777776 4789999999999998754 689999998889999999999988887
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-------CceeeeEEEEeCCcE
Q 025200 72 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKDL 144 (256)
Q Consensus 72 ~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-------g~T~~~~~~~~~~~~ 144 (256)
+|.+... .-.++++|.+|||||||+|+|.+.....++..+ ++|+..+++... ..
T Consensus 166 ~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g 226 (307)
T 1t9h_A 166 DIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GG 226 (307)
T ss_dssp TTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TE
T ss_pred HHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CE
Confidence 7654321 125899999999999999999987665666554 578777766665 57
Q ss_pred EEEecCCCCCCCC
Q 025200 145 EFLDSPGIIPMRI 157 (256)
Q Consensus 145 ~l~DtPGi~~~~~ 157 (256)
+++||||+....+
T Consensus 227 ~v~dtpg~~~~~l 239 (307)
T 1t9h_A 227 LVADTPGFSSLEF 239 (307)
T ss_dssp EEESSCSCSSCCC
T ss_pred EEecCCCcccccc
Confidence 8999999987543
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=5.5e-22 Score=182.06 Aligned_cols=153 Identities=24% Similarity=0.355 Sum_probs=107.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++++|+|++.+++..+..+.+++. ++|+++|+||+|+........+.+++ +.+. +++.+||++|.|+++|.+.+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 69999999999988877767777765 79999999999985431222223333 4454 67899999999999998887
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~ 154 (256)
.+..++..............++|+++|.||||||||+|+|.+.....+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 161 IKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp HHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred HHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 66554321100000012356899999999999999999999988888999999999864 2333 44688999999853
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=4.9e-22 Score=182.21 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=102.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcC-CeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~-~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+.+... .+.+++ +.+ ..++.+||++|.|+.+|.+.+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 159 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAV 159 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHH
Confidence 69999999999998877777777664 689999999999975421 112222 334 367899999999999998887
Q ss_pred HHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCC
Q 025200 78 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 154 (256)
.+..++.. ........++|+++|.||||||||+|+|.+.....+++.||+|++... +.. +..+.++||||+..
T Consensus 160 ~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 160 AEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp HHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred HHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 76554311 011123568999999999999999999999888789999999998642 222 44699999999965
Q ss_pred C
Q 025200 155 M 155 (256)
Q Consensus 155 ~ 155 (256)
.
T Consensus 236 ~ 236 (436)
T 2hjg_A 236 K 236 (436)
T ss_dssp B
T ss_pred C
Confidence 3
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.84 E-value=7e-21 Score=169.60 Aligned_cols=135 Identities=23% Similarity=0.339 Sum_probs=105.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHH---HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|+|++ +||+.|..+.+ .+++++ .++|.++|+||+||++++. +++|..+|++.|.+++++|+.++.|+++
T Consensus 131 vD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 131 IDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKP 208 (358)
T ss_dssp CCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHH
T ss_pred CCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHH
Confidence 588885 58999987765 566665 3788899999999998865 6789999999999999999999999887
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCC---C----ceeeeEEEEeCCcE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWVRFGKDL 144 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~---g----~T~~~~~~~~~~~~ 144 (256)
|...+. .-.++++|.+|||||||+|.|.|... ..++... | +|+..+...+..+.
T Consensus 209 L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~ 270 (358)
T 2rcn_A 209 LEEALT------------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG 270 (358)
T ss_dssp HHHHHT------------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC
T ss_pred HHHhcC------------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC
Confidence 765321 12579999999999999999999776 5555443 3 56666777787778
Q ss_pred EEEecCCCCCC
Q 025200 145 EFLDSPGIIPM 155 (256)
Q Consensus 145 ~l~DtPGi~~~ 155 (256)
.++||||+...
T Consensus 271 ~l~dtpgv~e~ 281 (358)
T 2rcn_A 271 DVIDSPGVREF 281 (358)
T ss_dssp EEEECHHHHTC
T ss_pred EecCcccHHHh
Confidence 89999999764
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.84 E-value=4e-20 Score=161.83 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=104.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHH---HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+++|..+.+ .+.+++ .+.|.++|+||+||+++.. .++|.+++++.+.+++++||++|.|+++
T Consensus 80 aD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~ 158 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDE 158 (302)
T ss_dssp CCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred cCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 699999999999865433 344444 4789999999999998752 6788888888888999999999999988
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC-------ceeeeEEEEeCCcEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDLE 145 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~ 145 (256)
|.+.+. .-.++++|.+|||||||+|+|. .....++.... +|+..+.+......+
T Consensus 159 L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~ 219 (302)
T 2yv5_A 159 LVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSF 219 (302)
T ss_dssp HHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEE
T ss_pred HHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcE
Confidence 765432 1247999999999999999999 76656665543 677666666655679
Q ss_pred EEecCCCCCC
Q 025200 146 FLDSPGIIPM 155 (256)
Q Consensus 146 l~DtPGi~~~ 155 (256)
++||||+...
T Consensus 220 v~d~pg~~~~ 229 (302)
T 2yv5_A 220 VGDTPGFSKV 229 (302)
T ss_dssp EESSCCCSSC
T ss_pred EEECcCcCcC
Confidence 9999999743
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.1e-20 Score=174.26 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=102.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+|++|+|+|++.+++..+..+.+++. ++|+++|+||+|+.+.. ..+.+++.......+.+||++|.|+.+|.+.+.
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHHHHHHHH
Confidence 69999999999988887778877776 68999999999987542 223333322223567899999999999888776
Q ss_pred HHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCCC
Q 025200 79 ALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~~ 155 (256)
+...... ........++|+++|.||||||||+|+|.+.....+++.||+|++.. .+.. +..+.++||||+...
T Consensus 181 ~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 181 EHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp TTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred hhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 5443211 11123457899999999999999999999988888999999999863 3333 446899999998753
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=1.2e-18 Score=152.26 Aligned_cols=137 Identities=23% Similarity=0.371 Sum_probs=100.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHH---HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+++|.++.+ .+.+++ .+.|+++|+||+||.+... .++|.+++... ..++.+||++|.|+++
T Consensus 85 ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 85 VDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp CCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHH
T ss_pred CCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHH
Confidence 699999999999875432 333443 3689999999999987654 56677766543 6788999999999988
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-------CceeeeEEEEeCCcEE
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKDLE 145 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~ 145 (256)
+...+. .-.++++|.+|+|||||+|+|.+.....++... ++|+..+.++.....+
T Consensus 163 lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~ 224 (301)
T 1u0l_A 163 LKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY 224 (301)
T ss_dssp HHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCE
T ss_pred HHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCE
Confidence 765432 124799999999999999999987665555443 3666656666555678
Q ss_pred EEecCCCCCCCC
Q 025200 146 FLDSPGIIPMRI 157 (256)
Q Consensus 146 l~DtPGi~~~~~ 157 (256)
++||||+....+
T Consensus 225 v~q~p~~~~~~~ 236 (301)
T 1u0l_A 225 VVDTPGFANLEI 236 (301)
T ss_dssp EESSCSSTTCCC
T ss_pred EEECcCCCccCC
Confidence 999999987654
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=1.2e-18 Score=155.67 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=107.0
Q ss_pred EEEecCCCCCCCCHHHHHhh----CCCCEEEEEecCCCCChHHHHHHHHHHHH-c-CCeEEEecCcCCcchhHHHHHHHH
Q 025200 6 EVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 6 ~VvDar~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-~-~~~vi~~sa~~~~g~~~L~~~i~~ 79 (256)
.++|++.|+.+.+|.+.+++ ..++.+++|||+|++++...+.|.+|++. . +......++..+.+...+.+.+++
T Consensus 63 ~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (357)
T 2e87_A 63 KVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRD 142 (357)
T ss_dssp HHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899988876 67888999999999999989999999876 3 433333343334444444444333
Q ss_pred HHhhh-------hhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC---CcEEEEec
Q 025200 80 LASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDS 149 (256)
Q Consensus 80 l~~~~-------~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~Dt 149 (256)
+.... ...+...+......+|+++|.||||||||+|+|.+.. ..+++.|++|++.+...+. ..+.++||
T Consensus 143 ~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt 221 (357)
T 2e87_A 143 IDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDT 221 (357)
T ss_dssp THHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeC
Confidence 32221 1111112223467899999999999999999999876 4678889999988765542 35899999
Q ss_pred CCCCCCCC
Q 025200 150 PGIIPMRI 157 (256)
Q Consensus 150 PGi~~~~~ 157 (256)
||+.....
T Consensus 222 ~G~~~~~~ 229 (357)
T 2e87_A 222 PGLLDRPI 229 (357)
T ss_dssp TTTSSSCS
T ss_pred CCccccch
Confidence 99987544
No 13
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.5e-13 Score=123.12 Aligned_cols=59 Identities=37% Similarity=0.576 Sum_probs=49.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 155 (256)
...+|++||+||||||||+|+|++.+ ..++++||+|++... +.. +..++++||||++..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 45699999999999999999999876 578999999999753 333 456999999999864
No 14
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.26 E-value=8.2e-14 Score=124.69 Aligned_cols=59 Identities=29% Similarity=0.368 Sum_probs=38.1
Q ss_pred ceE-EEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC-CcEEEEecCCCCCCC
Q 025200 97 AVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~-i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPGi~~~~ 156 (256)
.++ |+++|+||||||||+|+|.+... .+++.|++|++.. .+.++ ..+.++||||++...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l 240 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI 240 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC
Confidence 344 99999999999999999998764 7788999998763 44443 468899999997643
No 15
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.21 E-value=1.7e-11 Score=103.85 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=43.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-CceeeeEEEEe---CCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVRF---GKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-g~T~~~~~~~~---~~~~~l~DtPGi~~~ 155 (256)
..++|+++|.||||||||+|+|.+.+...++..+ |+|+..+.... +..+.++||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 5789999999999999999999998876665444 68887654332 446899999999754
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.18 E-value=5.4e-11 Score=95.81 Aligned_cols=62 Identities=32% Similarity=0.595 Sum_probs=44.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~ 157 (256)
..++|+++|.+|||||||+|+|.+.. ...+++.+|+|+.......+..+.++||||+..+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcccc
Confidence 46899999999999999999999876 556788999999988888888999999999876544
No 17
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.18 E-value=2.7e-11 Score=105.61 Aligned_cols=60 Identities=38% Similarity=0.576 Sum_probs=49.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~~ 156 (256)
..+|+++|.||||||||+|+|.+.+...+++.|++|++.... .. +..+.++||||+..+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 357999999999999999999999988889999999875432 12 3468899999998653
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.17 E-value=1.2e-10 Score=93.44 Aligned_cols=62 Identities=32% Similarity=0.502 Sum_probs=54.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~ 157 (256)
..++|+++|.+|||||||+|+|.+.....+++.+|+|+.......+..+.++||||+.....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccC
Confidence 45789999999999999999999988778889999999988888888999999999876543
No 19
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=1.9e-11 Score=111.81 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~ 154 (256)
+|++||.||||||||+|+|.+.+.+.+++.||+|++.... .+ +..+.++||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 6899999999999999999998877889999999986533 33 44689999999975
No 20
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.15 E-value=3.7e-11 Score=99.05 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=53.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeC----CcEEEEecCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPMRI 157 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~~~~~ 157 (256)
..++|+++|.+|||||||+|+|.+.. ...++..||+|++....... ..+.++||||+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 94 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV 94 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccC
Confidence 46799999999999999999999987 56888999999998777665 5799999999876533
No 21
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.15 E-value=5.4e-11 Score=103.93 Aligned_cols=61 Identities=38% Similarity=0.599 Sum_probs=51.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e--CCcEEEEecCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~l~DtPGi~~~~ 156 (256)
.+-.|+++|.||||||||+|+|.+.+...+++.|++|++..... . +..+.++||||+..+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 45679999999999999999999999888999999999865322 2 3458899999998754
No 22
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.15 E-value=5.2e-11 Score=102.31 Aligned_cols=59 Identities=31% Similarity=0.503 Sum_probs=49.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 5789999999999999999999887 588999999988654332 4568999999997644
No 23
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.14 E-value=2.9e-11 Score=111.68 Aligned_cols=59 Identities=31% Similarity=0.419 Sum_probs=29.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~ 154 (256)
..++|+++|.||||||||+|+|.+.....+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 36889999999999999999999988788999999999974 3334 34689999999965
No 24
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.12 E-value=1.4e-10 Score=99.16 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=50.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
..++|+++|.+|||||||+|+|.+.....+++.+|+|.....+.. +..+.++||||+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 468999999999999999999999888788889999987654443 3368999999997543
No 25
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.11 E-value=9.3e-11 Score=93.32 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=48.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC-CcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPGi~~~ 155 (256)
..+|+++|.||||||||+|+|.+.....++..||+|++.. .+.++ ..+.++||||+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 5789999999999999999999887666788999998753 34443 35889999999753
No 26
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=97.11 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=42.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEE--e-CCcEEEEecCCCCCCCCCc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRISD 159 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~--~-~~~~~l~DtPGi~~~~~~~ 159 (256)
..++|+++|.+|||||||+|+|.+.... .+..| ++|+..+... . +..+.++||||+......+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN 95 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----C
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH
Confidence 4689999999999999999999987763 44444 7787765433 3 3478999999998765544
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.11 E-value=2.3e-11 Score=112.51 Aligned_cols=57 Identities=39% Similarity=0.566 Sum_probs=49.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~ 153 (256)
.++|+++|.||||||||+|+|.+.....+++.||||++.. .+.+ +..+.++||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 5899999999999999999999988778999999999863 3344 3468999999997
No 28
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.10 E-value=2e-10 Score=97.86 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=50.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 156 (256)
+.++|+++|.+|||||||+|+|.+.....++..+++|........ +..+.++||||+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 478999999999999999999999888788889998887654332 3468999999997643
No 29
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.09 E-value=3.4e-10 Score=97.22 Aligned_cols=59 Identities=37% Similarity=0.484 Sum_probs=49.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--CCcEEEEecCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~l~DtPGi~~~~ 156 (256)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC
Confidence 4789999999999999999999875 468899999987655444 3579999999997543
No 30
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.09 E-value=1.7e-10 Score=98.20 Aligned_cols=57 Identities=32% Similarity=0.426 Sum_probs=47.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEE--Ee-CCcEEEEecCCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 156 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~~ 156 (256)
+|+++|.||||||||+|+|+|.+ ..+++.||+|.+.... .. +..+.++||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 68999999999999999999875 5789999999876533 33 3468999999997654
No 31
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.08 E-value=2.5e-10 Score=97.21 Aligned_cols=61 Identities=36% Similarity=0.530 Sum_probs=49.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~ 157 (256)
+.++|+++|.||||||||+|+|++... .+++.||+|.+.....+ +..+.++||||......
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 357899999999999999999998764 58899999988654333 34689999999976543
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.06 E-value=6.2e-11 Score=108.38 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=34.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+|++||.||||||||+|+|.+.+.+.+++.||+|++...... +..+.++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4799999999999999999999888889999999999876554 35689999999974
No 33
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.05 E-value=5e-10 Score=89.48 Aligned_cols=57 Identities=35% Similarity=0.507 Sum_probs=48.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCCcEEEEecCCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 156 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 156 (256)
++|+++|.+|||||||+|++.+.. ..++..||+|.....+... .+.++||||+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMM 58 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccccc
Confidence 479999999999999999999876 5677889999888777765 89999999986543
No 34
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.04 E-value=2e-10 Score=108.29 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=43.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCC-CCceeeeE-EE-----EeCCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPR-PGVTRVLK-WV-----RFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~-~g~T~~~~-~~-----~~~~~~~l~DtPGi~~~ 155 (256)
...+|+++|.||||||||||+|.|.... .+++. .++|+.+. |. ..+..+.|+||||+..+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 4678999999999999999999998653 33322 24455442 21 12457999999999865
No 35
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.04 E-value=1.7e-10 Score=100.54 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=47.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~ 153 (256)
...|+++|.||||||||+|+|.+.+...+++.|++|++... +.. +..+.++||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 45799999999999999999999988788899999987532 222 3358899999986
No 36
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.04 E-value=3.1e-10 Score=96.21 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=49.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCC-ceeeeEE--EEe-CCcEEEEecCCCCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMRIS 158 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~~-~~~~~l~DtPGi~~~~~~ 158 (256)
..++|+++|.||||||||+|+|.+.....++..|+ +|++... ... +..+.++||||+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~ 87 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH 87 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC
Confidence 46899999999999999999999988767766666 7777543 222 446999999999865443
No 37
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=2.4e-10 Score=101.89 Aligned_cols=56 Identities=41% Similarity=0.569 Sum_probs=41.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC------------------CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~~ 154 (256)
++|++||.||||||||+|+|++.. +.++++|++|.+.. .+... ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999877 67889999998754 23332 3589999999975
No 38
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.02 E-value=5.1e-10 Score=95.76 Aligned_cols=60 Identities=33% Similarity=0.470 Sum_probs=49.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e-CCcEEEEecCCCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMRI 157 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~~~ 157 (256)
.++|+++|.||||||||+|+|++... .+++.||+|.+..... . +..+.++||||+.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 46899999999999999999998765 8899999998865333 2 34589999999986543
No 39
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=1.3e-10 Score=105.06 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=30.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEE--e---------------------C----CcEEEEecC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F---------------------G----KDLEFLDSP 150 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~---------------------~----~~~~l~DtP 150 (256)
++|+++|.||||||||+|+|++.+ +.++++|++|++..... . . ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999987 78899999998754221 0 1 248899999
Q ss_pred CCCC
Q 025200 151 GIIP 154 (256)
Q Consensus 151 Gi~~ 154 (256)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9964
No 40
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.00 E-value=1.4e-10 Score=106.74 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~ 154 (256)
..++|+++|.||||||||+|+|.+.....++..||+|++.. .+.+ +..+.++||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 36889999999999999999999987777899999999863 3334 44689999999964
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.00 E-value=2.7e-10 Score=104.66 Aligned_cols=58 Identities=36% Similarity=0.528 Sum_probs=38.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
..+|+++|.||||||||+|+|.+++...+++.||+|++...... +..+.++||||+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC
Confidence 35799999999999999999999888889999999999876665 45699999999874
No 42
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.00 E-value=5e-10 Score=96.02 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=38.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCC-------CCCceeeeEEEEeC--C---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRFG--K---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~-------~~g~T~~~~~~~~~--~---~~~l~DtPGi~~ 154 (256)
.++|+++|.||+|||||+|+|.+......+. .|+++.+.....+. . .+.++||||+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 5899999999999999999999887655443 34444444333332 2 689999999954
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.99 E-value=8.3e-10 Score=86.89 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=42.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.||||||||+|+|.+.......+.+|+|.....+.++. .+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 36899999999999999999999987766777788887666666654 478999999854
No 44
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.98 E-value=1.5e-09 Score=85.49 Aligned_cols=58 Identities=31% Similarity=0.569 Sum_probs=41.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~~ 155 (256)
..+|+++|.||||||||+|+|.+... .++..||+|.+.. .+.. +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 46899999999999999999997653 5677888887643 2333 346899999998764
No 45
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.96 E-value=4.4e-10 Score=91.69 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=40.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-CcccCCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
...+|+++|.+|||||||+|+|.+.. ...+++.+|+|+....+..+.++.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 46789999999999999999999876 456678899998776666656899999999864
No 46
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.96 E-value=5e-10 Score=100.78 Aligned_cols=60 Identities=32% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe------------------CCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~------------------~~~~~l~DtPGi~~ 154 (256)
....+|++||.||||||||+|+|++.+. .+++.|++|.+... +.+ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4567899999999999999999998775 88999999987542 222 22489999999986
Q ss_pred C
Q 025200 155 M 155 (256)
Q Consensus 155 ~ 155 (256)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 47
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.94 E-value=7e-10 Score=86.14 Aligned_cols=58 Identities=47% Similarity=0.559 Sum_probs=38.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 155 (256)
.+|+++|.+|||||||+|++.+.....++..|++|.+...... +..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 4799999999999999999999876667888999887654333 346899999999753
No 48
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=9.2e-10 Score=99.10 Aligned_cols=62 Identities=29% Similarity=0.333 Sum_probs=51.0
Q ss_pred CCCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC------------------CcEEEEecCCCC
Q 025200 94 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGII 153 (256)
Q Consensus 94 ~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~ 153 (256)
.....+++++|.||||||||+|+|++.+.+.+++.|++|.+.. .+.+. ..+.++||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 3456789999999999999999999988778999999998764 33333 247999999997
Q ss_pred CC
Q 025200 154 PM 155 (256)
Q Consensus 154 ~~ 155 (256)
..
T Consensus 97 ~~ 98 (392)
T 1ni3_A 97 KG 98 (392)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 49
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=3.4e-09 Score=84.65 Aligned_cols=59 Identities=31% Similarity=0.566 Sum_probs=46.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 155 (256)
+.++|+++|.+|||||||+|+|.+.. ..++..||+|.+... +.. +..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 46799999999999999999999865 456778998877543 333 346889999998764
No 50
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.93 E-value=1.2e-09 Score=90.77 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=43.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
.+.++|+++|.+|||||||+|+|.+.... +++.+++|++...... +..+.++||||...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 35689999999999999999999987653 6778899988764332 34689999999965
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.92 E-value=2.5e-09 Score=83.60 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=45.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+... ....+.+|+|.....+.... .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 468999999999999999999998763 33456678777666555543 57899999984
No 52
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.91 E-value=6.3e-10 Score=95.93 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-----ccCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 130 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-----~~~~~~g 130 (256)
...+|+++|.||||||||+|+|.+.+.. .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4679999999999999999999998765 4455675
No 53
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.89 E-value=2.6e-09 Score=92.89 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
...+|+++|.||||||||+|+|.|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 457899999999999999999999876
No 54
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.87 E-value=2.1e-09 Score=83.91 Aligned_cols=57 Identities=23% Similarity=0.114 Sum_probs=34.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.||||||||+|++.+.....+.+.+|+|..... ..+. .+.++||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCcc
Confidence 46899999999999999999998877777888898876433 3322 468999999754
No 55
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.86 E-value=2.8e-09 Score=94.66 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-----ccCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 130 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-----~~~~~~g 130 (256)
...+|+++|.||||||||+|+|.|.+.. .++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3568999999999999999999998765 4455566
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.85 E-value=5.6e-09 Score=81.44 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=43.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|++.+.... ...+..|.+.....+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 578999999999999999999986643 2345556665555555544 58899999964
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.84 E-value=8.9e-09 Score=79.94 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=38.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||+|++.+..... ..++++.. ...+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchh
Confidence 5789999999999999999999765432 22222222 23333433 378999999643
No 58
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.83 E-value=7.6e-09 Score=99.74 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 131 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~ 131 (256)
..++|+++|.||+|||||+|+|.|...+.++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 368999999999999999999999998899998988
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=7e-09 Score=83.51 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=46.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+... ....+.+|+|.....+.... .+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 468999999999999999999998764 35667788887766665543 48899999964
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.83 E-value=6.2e-09 Score=81.47 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=41.0
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
.+.++|+++|.+|||||||+|++.+.......+..|.+. ..+.. +..+.++||||..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 457899999999999999999999876544333334332 22223 3468899999974
No 61
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=4e-09 Score=84.52 Aligned_cols=99 Identities=17% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHhh-----CCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~l-----~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+. .+ ..+. .+.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|+++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 6899999999877543221 11 2222 2468999999999964322 2333444555677888999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHH
Q 025200 73 LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 112 (256)
Q Consensus 73 L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSs 112 (256)
+.+.+.+......... --+.+|+||||
T Consensus 168 l~~~l~~~~~~~~~~~-------------~~~~~n~gkSs 194 (195)
T 1x3s_A 168 AFEELVEKIIQTPGLW-------------ESENQNSGPSS 194 (195)
T ss_dssp HHHHHHHHHHTSGGGT-------------CC---------
T ss_pred HHHHHHHHHHhhhhhh-------------cccccCCCCCC
Confidence 8887766544322111 11345999997
No 62
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.82 E-value=3.8e-09 Score=92.08 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~ 153 (256)
..++|+++|.||||||||+|++.+.....+++.+|+|.+...... +..+.++||||..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 357899999999999999999998766677788999988765433 2257899999974
No 63
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.81 E-value=7.9e-09 Score=80.59 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=43.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 46899999999999999999999765433 334556666555555543 478999999643
No 64
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.80 E-value=2.2e-09 Score=95.95 Aligned_cols=57 Identities=39% Similarity=0.509 Sum_probs=44.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EE----------------------eCCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR----------------------FGKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~----------------------~~~~~~l~DtPGi~ 153 (256)
++|++||.||||||||+|+|++.. ..+++.|++|..... .. .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999865 567889998876432 21 23458999999998
Q ss_pred CC
Q 025200 154 PM 155 (256)
Q Consensus 154 ~~ 155 (256)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 65
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1.3e-08 Score=80.34 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC---cEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~ 153 (256)
...++|+++|.+|||||||+|+|.+.........|.++.+.. .+..+. .+.++||||..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 346899999999999999999999877644444555554443 334443 57899999964
No 66
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.78 E-value=5.9e-09 Score=97.93 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc--ccCCCCCceee
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 134 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~--~~~~~~g~T~~ 134 (256)
...+|+++|.+|||||||||+|.+.+.. .++..|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 4679999999999999999999998865 68888888764
No 67
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.78 E-value=3.9e-09 Score=93.75 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=22.6
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhc
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
.....|+++|+||||||||+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.78 E-value=1.4e-08 Score=79.88 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=42.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+. .+.++||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 46899999999999999999999876432 233445555555555543 57899999964
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.78 E-value=1.5e-08 Score=80.51 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=39.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+... ....+++|.+.. .+..+. .+.++||||...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 468999999999999999999997653 344455554432 233333 267899999654
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.77 E-value=1.4e-08 Score=79.96 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=39.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.... ...+..|.+.....+..+. .+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999999976542 1223334333334444544 58899999953
No 71
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.77 E-value=1.2e-08 Score=81.33 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=40.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|++.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence 468999999999999999999998773333344453322 2223 3468899999973
No 72
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.77 E-value=8.9e-09 Score=82.59 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=46.1
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeEEEEeCCcE
Q 025200 67 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDL 144 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~~~ 144 (256)
......+.+.+.++..... .+.....++|+++|.+|||||||+|+|.+..... .+..|++|.+. ....+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~-----~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 93 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGS-----GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGV 93 (193)
T ss_dssp TTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTC
T ss_pred HHHHHHHHHHHHHHHHhhc-----CCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeE
Confidence 3445556655555443322 1112456899999999999999999999875322 23445555443 34578
Q ss_pred EEEecCCCCCC
Q 025200 145 EFLDSPGIIPM 155 (256)
Q Consensus 145 ~l~DtPGi~~~ 155 (256)
.++||||....
T Consensus 94 ~l~Dt~G~~~~ 104 (193)
T 2ged_A 94 TLVDFPGHVKL 104 (193)
T ss_dssp SEEEETTCCBS
T ss_pred EEEECCCCchH
Confidence 99999998654
No 73
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.77 E-value=4.5e-09 Score=82.94 Aligned_cols=59 Identities=25% Similarity=0.448 Sum_probs=43.7
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-CCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~ 154 (256)
++..+|+++|.+|||||||+|+|.+... .....|++|.+.. .+.. +..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 4578999999999999999999997654 3455666665543 2333 34688999999753
No 74
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.76 E-value=1.9e-08 Score=78.26 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=39.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC--CceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+.... ....| |.+.....+..+. .+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 4689999999999999999999986532 22223 2222223333433 588999999654
No 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.76 E-value=2.3e-08 Score=77.60 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=37.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|+|.+... ....++++... ..+..+. .+.++||||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 58999999999999999999998663 22333333222 2233433 57899999964
No 76
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.76 E-value=2e-08 Score=78.49 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=39.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.... ....|.++.+ ...+..+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999976542 2233433333 23444433 47788999964
No 77
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.75 E-value=2e-08 Score=80.58 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=42.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccC-CCCCceeeeEEEEeC---CcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG---KDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~---~~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|+|.+....... ...|++.....+..+ ..+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999987654332 333555444444443 2478999999864
No 78
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.75 E-value=2.3e-08 Score=79.08 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=41.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccC-CCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+....... +..|++.....+.... .+.++||||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 4689999999999999999999987653322 2334444444444443 58899999964
No 79
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.74 E-value=1.3e-08 Score=80.28 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=41.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+.... ....|++|.+. ..+..+. .+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 4689999999999999999999986643 44556655544 3344443 47899999964
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.74 E-value=2.5e-08 Score=77.52 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=37.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||+|++.+.... ...+.++... ..+..+. .+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 578999999999999999999986432 2222222221 1223332 378999999754
No 81
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.74 E-value=1.7e-08 Score=81.66 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=38.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+... ....+..|++.....+.++. .+.++||||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 468999999999999999999998663 23445566666555555543 38899999964
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.73 E-value=7.7e-09 Score=82.60 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=42.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.....+.+.+|.+... +.. +..+.++||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCH
Confidence 4689999999999999999999987655556666755332 222 4468899999974
No 83
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.73 E-value=2.9e-08 Score=79.41 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=41.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 46899999999999999999999765432 223334444444455544 58899999953
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.72 E-value=2.8e-08 Score=79.53 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=43.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.++||||.-.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 46899999999999999999999876432 234456665555454433 578999999653
No 85
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.72 E-value=1.7e-08 Score=78.69 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=37.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||+|++.+... .....|+++.+. ..+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 57899999999999999999997654 233444444433 3344433 478999999754
No 86
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=2.9e-08 Score=79.36 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=43.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+.... ...+..|++.....+.... .+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 3589999999999999999999986543 2334456665555555543 478999999754
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.71 E-value=1.2e-08 Score=81.14 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=43.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQES 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETTEEEEEEEESSSGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECCEEEEEEECCCCHh
Confidence 468999999999999999999998776566666775543 2222 34689999999843
No 88
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.71 E-value=3.2e-08 Score=81.20 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHH----HHHHHH-------cCCeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAW----ATYFAK-------QGTKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w----~~~~~~-------~~~~vi~~sa~~~ 67 (256)
+|++++|+|++.+++.....+.+++. +.|+++|+||+|+.+......+ .+.+.. .+.+++.+||++|
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g 195 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKR 195 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCC
Confidence 47899999999887755555656554 6899999999999987654333 333333 3457889999999
Q ss_pred cchhHHHHHHHHHHhh
Q 025200 68 MGTMKLSRLAKALASD 83 (256)
Q Consensus 68 ~g~~~L~~~i~~l~~~ 83 (256)
.|++++.+.+.+....
T Consensus 196 ~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 196 TGLDDAHALIESWLRP 211 (223)
T ss_dssp BSHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHhcCc
Confidence 9999999888776544
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.70 E-value=4.1e-08 Score=79.40 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=42.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 35899999999999999999999876432 234446665555555443 57899999974
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=1.6e-08 Score=80.86 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=40.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETTEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECCEEEEEEECCCCHh
Confidence 468999999999999999999997665555555554432 2222 34689999999854
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.70 E-value=1.2e-08 Score=84.00 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCceEEEEECCCCCcHHHHHHH-HhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINR-LLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~-l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|+ +.+.......+.+|+|.....+.... .+.++||||.-.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3578999999999999999999 54444455678889888877666543 478999999653
No 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.69 E-value=1.4e-08 Score=81.27 Aligned_cols=57 Identities=26% Similarity=0.408 Sum_probs=40.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCHh
Confidence 468999999999999999999987665444444443322 2222 34688999999753
No 93
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.69 E-value=4.5e-09 Score=93.08 Aligned_cols=55 Identities=31% Similarity=0.468 Sum_probs=45.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEeC--CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~--~~~~l~DtPGi~~ 154 (256)
+|+++|+||||||||||+|.+.+. .++++|++|..... +.++ ..+.++||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 589999999999999999998664 56889999987653 4443 5699999999864
No 94
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.69 E-value=3.9e-08 Score=79.91 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=41.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+... .....|+++.+. ..+..+. .+.++||||...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 468999999999999999999997654 233444444433 3444443 588999999754
No 95
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.69 E-value=2.9e-08 Score=79.93 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=38.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 46899999999999999999999765432 223334444444555544 57899999964
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.69 E-value=4.6e-08 Score=75.62 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=37.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||+|++.+.... ...++++.. ...+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999976532 222333322 12233333 368899999654
No 97
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.68 E-value=4.1e-08 Score=78.68 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=42.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+... .....|++|.+. ..+..+. .+.++||||...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 468999999999999999999998654 333445555443 4444443 478999999643
No 98
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.68 E-value=4e-08 Score=79.49 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=40.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999999986643 23334444333 3333333 47899999974
No 99
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.68 E-value=3.9e-08 Score=77.31 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=40.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.++||||..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 3589999999999999999999976542 33345554443 3344443 58899999964
No 100
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.68 E-value=4.1e-08 Score=77.72 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=39.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+... ....+..+.+. ...+..+. .+.++||||...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchh
Confidence 368999999999999999999996552 12223333333 23333433 468999999764
No 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=6.4e-08 Score=75.45 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=37.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|+|.+..... ......+++. .+.... .+.++||||...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE--EEEECCEEEEEEEEECCCchh
Confidence 35799999999999999999999765321 1112222222 222222 478999999754
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.68 E-value=5.5e-08 Score=77.02 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=40.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+... ....++++... ..+.... .+.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence 468999999999999999999998663 23333343332 2233333 578999999653
No 103
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.68 E-value=4.4e-08 Score=78.47 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
..++|+++|.+|||||||+|+|.+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 468999999999999999999998754
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.68 E-value=1.2e-08 Score=80.99 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=40.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+.......+..|.+. ..+.. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECCEEEEEEECCCCHh
Confidence 47899999999999999999999766555556666443 22333 44688999999864
No 105
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.67 E-value=6.1e-08 Score=78.26 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+... ....++++... ..+..+. .+.++||||...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 468999999999999999999998663 23334444332 2333443 578999999653
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.67 E-value=3.7e-08 Score=80.42 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=40.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC----CcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|++.+... ....+.++.+...+.++ ..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 467999999999999999999998663 33345555555445554 248999999974
No 107
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.67 E-value=2.7e-08 Score=80.11 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=42.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+.......+..|.+. ..+.. +..+.++||||...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETTEEEEEEECCCSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECCEEEEEEECCCCHH
Confidence 35789999999999999999999877655555556553 23333 34688999999854
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.66 E-value=3.7e-08 Score=79.03 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccC-CCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|+|.+....... ...|++.....+..+. .+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 34689999999999999999999986653322 2234444444555544 578999999754
No 109
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.66 E-value=5.4e-08 Score=77.76 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=38.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+.... ...++++... ..+.... .+.++||||..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4689999999999999999999976532 3333444332 2233333 37899999964
No 110
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.66 E-value=4.2e-08 Score=77.96 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=41.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999999976543 23334444333 3444443 57899999964
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.66 E-value=2.9e-08 Score=78.24 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeC----CcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|+|.+..... ..+..|.......+... ..+.++||||...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 357899999999999999999999765321 11222222222334443 3588999999754
No 112
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.66 E-value=3.8e-08 Score=79.03 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=39.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc--CCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~--~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
...+|+++|.+|||||||+|+|.+.....+ .+..|.+.. .+.. ...+.++||||...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHh
Confidence 467999999999999999999998776554 444453332 2222 34589999999853
No 113
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.65 E-value=3.6e-08 Score=78.95 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=39.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|+|.+..... ..+..|.+ ...+.. +..+.++||||...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHH
Confidence 46899999999999999999999865222 22222322 222333 35689999999653
No 114
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.65 E-value=3.2e-08 Score=78.06 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=36.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeC----CcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG----KDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+ ..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 46899999999999999999999865321 12222333333334443 247899999953
No 115
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.64 E-value=2.2e-08 Score=81.18 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=37.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeC-CcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~~ 154 (256)
+..+|+++|.+|||||||+|++.+.......+..|.+.. .+..+ ..+.++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHh
Confidence 467899999999999999999998765544555555532 33333 4688999999753
No 116
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.63 E-value=9.5e-08 Score=75.74 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=37.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee-eEEEEeCCc---EEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKD---LEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~~~---~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+.... ....|.++.. ......+.. +.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence 4689999999999999999999976432 2222222222 223333332 56799999753
No 117
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.63 E-value=7.4e-09 Score=94.19 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=38.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--C-C-cEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--G-K-DLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-~-~~~l~DtPGi~~~ 155 (256)
..++|+++|.+|+|||||+|+|.+.....++..+|+|.+.....+ . . .+.++||||....
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 467999999999999999999999887778899999988654333 2 2 6899999999754
No 118
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.63 E-value=4.4e-08 Score=76.08 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=37.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
++|+++|.+|||||||+|++.+.......+..|. ....+.. +..+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC--CEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCce--eEEEEEECCEEEEEEEcCCCh
Confidence 4799999999999999999987654332222221 1222222 3468999999984
No 119
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.63 E-value=5.9e-08 Score=76.60 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+.......+..|.+. ...+.++. .+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 46899999999999999999999876544333334332 22333433 478899999754
No 120
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.63 E-value=5.9e-08 Score=78.70 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=41.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+..+. .+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 4689999999999999999999986542 3333444333 33444444 588999999754
No 121
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=1e-07 Score=76.78 Aligned_cols=58 Identities=28% Similarity=0.414 Sum_probs=39.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee-eEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+....... .|.++.. ...+..+. .+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 4689999999999999999999986643221 1211111 12233332 478999999876
No 122
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.62 E-value=5.7e-08 Score=78.64 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=38.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|+|.+.... ...+.++.. ...+.. ...+.++||||...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence 4789999999999999999999987653 222222222 112222 22468999999754
No 123
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.62 E-value=8.6e-08 Score=76.29 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=39.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceee-eEEEEeC------------CcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRV-LKWVRFG------------KDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~-~~~~~~~------------~~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+..... ..+..|.+.. ...+... ..+.++||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 46899999999999999999999765421 1222233222 2233332 258899999974
No 124
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.62 E-value=9.5e-08 Score=75.21 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=41.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~~ 155 (256)
..++|+++|.+|||||||+|+|.+... .+..+++|... ..+..+. .+.++||||....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh
Confidence 468999999999999999999998642 34444454432 2233332 4788999997643
No 125
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.62 E-value=5.9e-08 Score=77.73 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=39.7
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
.+.++|+++|.+|||||||+|+|.+.... ...+..|.+. ..+.. +..+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH
Confidence 34789999999999999999999976543 2223333332 22222 3468899999964
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.60 E-value=3.5e-08 Score=80.79 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeC----CcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~----~~~~l~DtPGi~~~ 155 (256)
..++|+++|.+|||||||+|+|.+.... ......|++......... ..+.++||||....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 4689999999999999999999975532 233455555544433332 23789999997643
No 127
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.60 E-value=1.3e-07 Score=91.45 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred ecCcCCcchhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCcccCC
Q 025200 62 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 127 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~ 127 (256)
.++..+.|.+++...+.++......... +..-...+|+++|.+|+|||||+|+|.|....+++.
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~ 81 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 81 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC
Confidence 4555667888888887776554332111 111235689999999999999999999987655443
No 128
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=1.2e-07 Score=76.16 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=38.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+...... .+..+.+.. ..+..+. .+.++||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 468999999999999999999998654211 122222221 1222332 478999999654
No 129
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=9.5e-08 Score=77.85 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=40.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999997653 223334333333 3444443 47899999963
No 130
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.59 E-value=6e-08 Score=78.62 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=36.2
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCce--eeeEEEEeCC---cEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
+..++|+++|.+|||||||+|+|.+.... ....|.++ .....+..+. .+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 34689999999999999999999976542 22334333 3333444443 58899999963
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.59 E-value=8e-08 Score=79.21 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=40.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+...... .+..|++.....+..+. .+.++||||...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 468999999999999999999998664322 22233333333444544 588999999753
No 132
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.58 E-value=1e-07 Score=76.12 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=59.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHH----HHHHHcC-CeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQG-TKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~----~~~~~~~-~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+..+.......+..++. +.|+++|+||+|+.++....... +++...+ ..++.+||++|.|++++
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 184 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL 184 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHH
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 38999999998876654445545543 68999999999998765543333 3333323 57889999999999998
Q ss_pred HHHHHHHH
Q 025200 74 SRLAKALA 81 (256)
Q Consensus 74 ~~~i~~l~ 81 (256)
.+.+.+..
T Consensus 185 ~~~l~~~l 192 (195)
T 3pqc_A 185 LDLISTLL 192 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776654
No 133
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.56 E-value=1e-07 Score=74.31 Aligned_cols=57 Identities=19% Similarity=0.063 Sum_probs=33.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.||||||||+|++.+.........+ .|.+. ..+..+. .+.++||||...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 468999999999999999999875543333222 22222 2333433 467999999864
No 134
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.56 E-value=1.1e-07 Score=77.03 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~ 153 (256)
...++|+++|.+|||||||+|++.+.... ....|.++... ..+..+. .+.++||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 45689999999999999999999986542 22334333332 2234443 57899999974
No 135
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.56 E-value=7.3e-08 Score=88.07 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=42.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc------------------------------cCCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|.+|+|||||+|+|.+..... ....+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 46899999999999999999996542211 1223789988765443 34
Q ss_pred cEEEEecCCCC
Q 025200 143 DLEFLDSPGII 153 (256)
Q Consensus 143 ~~~l~DtPGi~ 153 (256)
.+.++||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 68999999964
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.56 E-value=1.3e-07 Score=77.51 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=32.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+.... ....+++... ..+..+. .+.++||||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999976532 2222232221 2233333 47899999964
No 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=1.1e-07 Score=77.34 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=37.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+..... ...|.++... ..+..+. .+.++||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 35789999999999999999999865432 1223222222 2233443 478999999754
No 138
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.55 E-value=1.3e-07 Score=76.33 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC---cEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|++.+.. .....+++|.+.. .+..+. .+.++||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 357899999999999999999999765 2344445554332 233333 467999999854
No 139
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.55 E-value=1e-07 Score=83.05 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred CcEEEEEEecCCCCCCCCHHH-HHhhC--CCCEEEEEecCCCC-ChHHHHHHHHHHHHc-C--CeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G--TKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l-~~~l~--~k~~ilVlNK~DL~-~~~~~~~w~~~~~~~-~--~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+..+.+..+..+ .+.+. +.|+++|+||+|+. +.+....+.+.+.+. + ..++.+||++|.|+++|
T Consensus 93 aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 93 ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDEL 172 (308)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHH
T ss_pred CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHH
Confidence 699999999998877655554 44444 58999999999998 666666666666543 2 57899999999999999
Q ss_pred HHHHHHHHhh
Q 025200 74 SRLAKALASD 83 (256)
Q Consensus 74 ~~~i~~l~~~ 83 (256)
.+.+.+..++
T Consensus 173 ~~~l~~~l~~ 182 (308)
T 3iev_A 173 VKTILKYLPE 182 (308)
T ss_dssp HHHHHHHSCB
T ss_pred HHHHHHhCcc
Confidence 9888776654
No 140
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.54 E-value=1.9e-07 Score=74.75 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~~ 155 (256)
..++|+++|.+|||||||+|++.+... ....++++... ..+.++. .+.++||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence 468999999999999999999998653 23333333322 1223332 4778999998643
No 141
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.54 E-value=2.1e-07 Score=73.61 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=37.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+.... .....++.+. ..+..+. .+.++||||...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 4689999999999999999999975432 2222233221 1222322 366999999853
No 142
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.53 E-value=4e-08 Score=79.41 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=19.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCcee-e--eEEEEeCC-----cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-V--LKWVRFGK-----DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~-~--~~~~~~~~-----~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|+|.+......+..++++. + ...+..+. .+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 35799999999999999999999863322333333332 2 23344443 48899999973
No 143
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=77.00 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 153 (256)
...++|+++|.+|||||||+|++.+.... ....|.++.+ ...+..+. .+.++||||..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 34689999999999999999999976532 1222222222 23344443 68899999964
No 144
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=3.1e-08 Score=79.52 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=41.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeEEEEeCC---cEEEEecCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGI 152 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 152 (256)
..++|+++|.+|||||||+|+|.+.... ...+..|++.....+.... .+.++||||.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4689999999999999999999976532 2223345555555555432 4889999994
No 145
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.53 E-value=7.7e-08 Score=77.50 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=36.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+.......+..|.+ ...+.. +..+.++||||...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECCEEEEEEECCCCHh
Confidence 4689999999999999999999876543322222211 122222 34588999999854
No 146
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.53 E-value=1.8e-07 Score=74.88 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=58.4
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHH----HHHHHHH-cCCeEEEecCcCCcchhHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA----WATYFAK-QGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~----w~~~~~~-~~~~vi~~sa~~~~g~~~L~ 74 (256)
|++++|+|+..+.+..+..+.+++. +.|+++|+||+|+.+...... +.+.+.. .+..++.+||+++.|++++.
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHH
Confidence 8999999999887765554555553 689999999999988765433 3333322 24678899999999999988
Q ss_pred HHHHHH
Q 025200 75 RLAKAL 80 (256)
Q Consensus 75 ~~i~~l 80 (256)
+.+.+.
T Consensus 187 ~~l~~~ 192 (195)
T 1svi_A 187 GAIKKM 192 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 147
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.52 E-value=1.9e-07 Score=75.96 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=38.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCc--EEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD--LEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~--~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|++.+... .+..+++|.+... +.. +.. +.++||||.-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 468999999999999999999997543 3344455544322 222 233 4599999984
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.52 E-value=7.1e-08 Score=78.93 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCccc--CCCCCceeeeEEEEeCCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~--~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+...... +..|+++.+. ....+.++||||...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence 467999999999999999999998664222 3344444332 245689999999954
No 149
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.51 E-value=1.6e-07 Score=75.45 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+... .....+++... ..+..+. .+.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999998663 22222222221 1222322 35899999964
No 150
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5.9e-08 Score=92.22 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=43.5
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCC------------------------------CCCceeeeEEEEe---C
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---G 141 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~------------------------------~~g~T~~~~~~~~---~ 141 (256)
...++|+++|.||+|||||+|+|.+........ .+|+|.+.....+ +
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764322111 3688887643332 3
Q ss_pred CcEEEEecCCCC
Q 025200 142 KDLEFLDSPGII 153 (256)
Q Consensus 142 ~~~~l~DtPGi~ 153 (256)
..+.++||||..
T Consensus 245 ~~~~iiDTPG~e 256 (611)
T 3izq_1 245 ANFTIVDAPGHR 256 (611)
T ss_dssp CEEEEEECCSSS
T ss_pred ceEEEEECCCCc
Confidence 468999999984
No 151
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.50 E-value=1.1e-07 Score=76.62 Aligned_cols=59 Identities=17% Similarity=0.055 Sum_probs=37.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.||||||||+|++.+.....++..++++.+ ...+.++. .+.++||+|.-.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 357999999999999999999997543333333433322 23344443 356899999653
No 152
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.50 E-value=5.1e-08 Score=77.17 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC--CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+.... .+.+... +.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|++
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence 5899999999876433221 1112222 579999999999964322 223333445557788999999999998
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 158 ~l~~~l~~~~ 167 (181)
T 3t5g_A 158 DVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877765544
No 153
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.48 E-value=3.2e-07 Score=73.00 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=37.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+..... ..+..+.+.. ..+..+. .+.++||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCCh
Confidence 46899999999999999999999865421 1122222211 1222322 47899999974
No 154
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.48 E-value=2e-07 Score=75.18 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=38.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|.+.++...........|.......+ ...+.++||||-..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 468999999999999999999998543221111122222222222 23589999999754
No 155
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.47 E-value=1.8e-07 Score=75.00 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC------------CCCEEEEEecCCCCChHHHHHHHHHH------HHcCCeEE
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRILVLNREDMISMADRNAWATYF------AKQGTKVI 60 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~------------~k~~ilVlNK~DL~~~~~~~~w~~~~------~~~~~~vi 60 (256)
+|++|+|+|+.++.+..+ ..+..++. +.|+++|+||+|+.+.....++.+.+ +..+..++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence 689999999998754322 22333322 57999999999998764333333332 23456788
Q ss_pred EecCcCCcchhHHHHHHHHHHhh
Q 025200 61 FSNGQLGMGTMKLSRLAKALASD 83 (256)
Q Consensus 61 ~~sa~~~~g~~~L~~~i~~l~~~ 83 (256)
.+||+++.|++++.+.+.+....
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHH
Confidence 99999999999988877665543
No 156
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.47 E-value=2.2e-07 Score=74.08 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=33.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCC-CCCceeeeEEEEe--------CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~--------~~~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|++.+......+. .|.++.+.....+ ...+.++||||..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 3689999999999999999999853222222 2322233322211 2357899999964
No 157
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.46 E-value=2.1e-07 Score=74.30 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCCCCCCHH----HHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPL----MDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~----l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~ 68 (256)
+|++|+|+|+..+.+..+.. +..++ .+.|+++|+||+||.+....++..++.++.+. .++.+||++|.
T Consensus 98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 177 (198)
T 3t1o_A 98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGK 177 (198)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTB
T ss_pred CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCc
Confidence 68999999998553332221 22222 36799999999999765444455555666676 88999999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 178 gv~~l~~~l~~~i 190 (198)
T 3t1o_A 178 GVFETLKEVSRLV 190 (198)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9998887766544
No 158
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.46 E-value=9.2e-08 Score=77.36 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=39.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+... .....|++|.+. ..+.++. .+.++||||...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 468999999999999999999985432 123345444433 2333433 367889999853
No 159
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.46 E-value=2.1e-07 Score=86.12 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe-CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 153 (256)
...++|+++|.||||||||+|+|.+.......+..|++.. .+.. +..+.++||||..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSSCEEEEEEECCCG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCCEEEEEEECCCcH
Confidence 3568999999999999999999998774433333333322 2222 3468999999964
No 160
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.45 E-value=6.4e-08 Score=76.75 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=25.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+... .....|+++.+.. .+.++. .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 368999999999999999999996543 2333455554433 344443 58899999974
No 161
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.45 E-value=2.5e-07 Score=72.18 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+.....++.+.+. ..+..++.+||++|.
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 689999999998754321 2233333 3579999999999987543444444432 223468889999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 155 gi~~l~~~l~~~i 167 (171)
T 1upt_A 155 GLDEAMEWLVETL 167 (171)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888776544
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.45 E-value=1e-07 Score=88.06 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=41.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC------------------------------cccCCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~------------------------------~~~~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|.+|+|||||+|+|.+... ......+|+|.+.....+ ..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 468999999999999999999975411 122344688887654444 34
Q ss_pred cEEEEecCCCCC
Q 025200 143 DLEFLDSPGIIP 154 (256)
Q Consensus 143 ~~~l~DtPGi~~ 154 (256)
.+.++||||...
T Consensus 112 ~~~iiDTPG~~~ 123 (483)
T 3p26_A 112 NFTIVDAPGHRD 123 (483)
T ss_dssp EEEEECCCCCGG
T ss_pred eEEEEECCCcHH
Confidence 689999999843
No 163
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.45 E-value=2.8e-07 Score=85.13 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|++|+|+|+..+.+..+..+.+.+.++|+++|+||+||.+....+++.+++ ..+.+++.+||++|.|+++|.+.+.+.
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999988765555555666789999999999997542223333332 223568999999999999998877654
No 164
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=75.10 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~ 66 (256)
+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....+++.+++. ..+..++.+||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 689999999987633221 2222222 3579999999999976543444444442 2245688999999
Q ss_pred CcchhHHHHHHHHHH
Q 025200 67 GMGTMKLSRLAKALA 81 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~ 81 (256)
|.|++++.+.+.+..
T Consensus 171 ~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 171 GEGLQEGVDWLQDQI 185 (190)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999888776554
No 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=2.3e-07 Score=76.45 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=38.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.||||||||+|++.+.....+...+.++.+ ...+.++. .+.++||+|.-
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 358999999999999999999997554333433433322 23344443 25789999953
No 166
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.44 E-value=1e-07 Score=75.26 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=32.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~---~~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+... ....++++.+... +.. .-.+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 468999999999999999999997653 2223333322110 111 22366999999754
No 167
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.43 E-value=6.1e-07 Score=71.70 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
...++|+++|.+|||||||+|++.+..... ...|-.......+.++. .+.++||||...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCTTCEEEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCCcceEEEEEEECCEEEEEEEEECCCChh
Confidence 357899999999999999999999765422 11221111112333433 367799999753
No 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.43 E-value=1.3e-07 Score=77.28 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.5
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
...++|+++|.+|||||||+|+|.+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3468999999999999999999997653
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.43 E-value=5.2e-08 Score=92.28 Aligned_cols=59 Identities=25% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcc------------------------------cCCCCCceeeeEEEEe---C
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---G 141 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~ 141 (256)
...++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 356899999999999999999996421111 1125788988764443 3
Q ss_pred CcEEEEecCCCC
Q 025200 142 KDLEFLDSPGII 153 (256)
Q Consensus 142 ~~~~l~DtPGi~ 153 (256)
..+.++||||..
T Consensus 255 ~~i~iiDTPGh~ 266 (592)
T 3mca_A 255 KIYEIGDAPGHR 266 (592)
T ss_dssp ----CCEEESSS
T ss_pred eEEEEEECCChH
Confidence 468999999974
No 170
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.42 E-value=4.4e-07 Score=80.59 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMC 123 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~ 123 (256)
.+|++||.+|+|||||+|+|.|....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 48999999999999999999997653
No 171
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.41 E-value=3.8e-08 Score=79.59 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceee--eEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|+|.+.... ....|++|.+ ...+..+. .+.++||||...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4689999999999999999999975532 2223444433 33444443 478999999643
No 172
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.41 E-value=5e-07 Score=71.77 Aligned_cols=83 Identities=13% Similarity=-0.013 Sum_probs=57.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++|+|+|+..+.+..+. .+...+ .+.|+++|+||+|+.+... .+...++....+..++.+||+++.|++
T Consensus 94 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 173 (195)
T 3bc1_A 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 6899999999877554331 121111 3679999999999975321 233333444557788999999999999
Q ss_pred HHHHHHHHHHhh
Q 025200 72 KLSRLAKALASD 83 (256)
Q Consensus 72 ~L~~~i~~l~~~ 83 (256)
++.+.+.+...+
T Consensus 174 ~l~~~l~~~~~~ 185 (195)
T 3bc1_A 174 HAIEMLLDLIMK 185 (195)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877665543
No 173
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.40 E-value=4.3e-07 Score=72.41 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=38.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCC-------CCceeeeEEEE-----eC---CcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVR-----FG---KDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~-------~g~T~~~~~~~-----~~---~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|.|.+.......+. ...|....... .+ ..+.++||||...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 468999999999999999999987654332110 12233322211 11 1378999999753
No 174
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.39 E-value=6e-07 Score=73.01 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=39.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+... ....++++.+. ..+.++. .+.++||||...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 468999999999999999999997653 22223333222 1223332 578999999853
No 175
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.39 E-value=6.3e-07 Score=82.66 Aligned_cols=79 Identities=22% Similarity=0.114 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCCCCC----CCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHc-CCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~----~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+..+.+. ....+.+.+.++|+++|+||+|+.+...... +.+.+. ..+++.+||++|.|+++|.+
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 6999999999998775 3334445556789999999999987654432 223332 35688999999999999988
Q ss_pred HHHHHH
Q 025200 76 LAKALA 81 (256)
Q Consensus 76 ~i~~l~ 81 (256)
.+.+..
T Consensus 391 ~i~~~~ 396 (476)
T 3gee_A 391 HMGDLV 396 (476)
T ss_dssp HHTHHH
T ss_pred HHHHHH
Confidence 776554
No 176
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.39 E-value=9.1e-07 Score=69.45 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHHHHHHHHHHc-------C--CeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-------G--TKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-------~--~~vi~~sa~~~~g 69 (256)
+|++++|+|+..+......+....+ .+.|+++|+||+|+.+.. ..+..+.++.. + ..++.+||++|.|
T Consensus 79 ~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 5899999999887543332322223 268999999999998632 12222223221 1 3678899999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
++++.+.+.+...
T Consensus 158 v~~l~~~l~~~~~ 170 (178)
T 2lkc_A 158 LDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9998887766544
No 177
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.39 E-value=7e-07 Score=72.79 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=37.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee-EEEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.... ....|.+.... ..+..+. .+.++||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999999986542 22222222111 1223332 47899999974
No 178
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.38 E-value=3.9e-07 Score=72.43 Aligned_cols=82 Identities=13% Similarity=0.036 Sum_probs=56.7
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+....++..+.+. ..+..++.+||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 689999999988754322 1222332 2579999999999986544444444432 223567889999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|++++.+.+.+...
T Consensus 166 gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 166 DLLPGIDWLLDDIS 179 (186)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998887765543
No 179
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.38 E-value=1.8e-07 Score=85.41 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
-.-|+|+|.||+|||||+|.|.|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345899999999999999999864
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.38 E-value=2.8e-07 Score=83.52 Aligned_cols=55 Identities=38% Similarity=0.590 Sum_probs=44.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeC--CcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--KDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~--~~~~l~DtPGi~~ 154 (256)
.|+++|.||+|||||+|+|++... .+++.|++|.... .+... ..+.+.||||+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 489999999999999999998754 6778888887654 33433 4689999999975
No 181
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.37 E-value=8.4e-07 Score=72.68 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=36.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE-EEEeCC---cEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~-~~~~~~---~~~l~DtPGi~ 153 (256)
..++|+++|.+|||||||+|++.+.... ....|.+..... .+.+.. .+.++||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 4689999999999999999999986542 121222222211 222222 47899999964
No 182
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.37 E-value=3.6e-07 Score=72.89 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+.+++. +.|+++|+||+|+.+.....++.+.+. ..+..++.+||+++.
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCcc
Confidence 689999999998754321 22333332 579999999999986533333333332 223467889999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|++++.+.+.+...
T Consensus 170 gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 170 GLVEGMDWLVERLR 183 (189)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998887766543
No 183
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.36 E-value=2.6e-07 Score=80.28 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=59.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC----CCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+..+.+..+..+.+.+. +.|+++|+||+|+.+... +.++.+.+ .....++.+||++|.|++++.+
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKA 165 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHH
Confidence 69999999999887655444444443 689999999999987655 44444433 1224678999999999999888
Q ss_pred HHHHHHh
Q 025200 76 LAKALAS 82 (256)
Q Consensus 76 ~i~~l~~ 82 (256)
.+.+..+
T Consensus 166 ~l~~~l~ 172 (301)
T 1wf3_A 166 DLLALMP 172 (301)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 8766543
No 184
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.36 E-value=2.1e-07 Score=71.91 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHHcCC-eEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~-~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++++|+|+..+.+.....+.+++. +.|+++|+||+|+.+... ..+.+.+.+. .++.+||+++.|++++.+.+
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEecccCCChHHHHHHH
Confidence 58999999999886655445555554 689999999999976531 1111223454 68899999999999888766
Q ss_pred HH
Q 025200 78 KA 79 (256)
Q Consensus 78 ~~ 79 (256)
.+
T Consensus 157 ~~ 158 (161)
T 2dyk_A 157 WE 158 (161)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 185
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.36 E-value=3.5e-07 Score=70.91 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+..++. +.|+++|+||+|+.+.....++.+.+.. .+.+++.+||++|.
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 689999999988743221 12333332 5799999999999765333444443321 23457889999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 148 gi~~l~~~l~~~ 159 (164)
T 1r8s_A 148 GLYEGLDWLSNQ 159 (164)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999888776554
No 186
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.36 E-value=1.8e-07 Score=88.59 Aligned_cols=114 Identities=15% Similarity=0.041 Sum_probs=77.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH-h-hCCCCEEEEEecCCCCCh---HHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ-W-LGNRKRILVLNREDMISM---ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~-~-l~~k~~ilVlNK~DL~~~---~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|.+|+|+||..+.......... . ..+.|+++|+||+|+.+. +..++|.+.+.-....++++||++|.|+++|.+
T Consensus 95 aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~ 174 (599)
T 3cb4_D 95 CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLE 174 (599)
T ss_dssp CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHH
Confidence 69999999999876654332222 1 236899999999999753 223445444321113488999999999999988
Q ss_pred HHHHHHhhhhhhhhccCCCCCceEEEEECC---CCCcHHHHHHHHhcC
Q 025200 76 LAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINRLLKR 120 (256)
Q Consensus 76 ~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~---pnvGKSslin~l~~~ 120 (256)
.+.+..+... +....+++..+... |++|+.++++-+.|.
T Consensus 175 ~I~~~lp~p~------~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 175 RLVRDIPPPE------GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp HHHHHSCCCC------CCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred HHhhcCCCcc------ccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 8776554321 22334666666555 899999988887764
No 187
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=7.8e-07 Score=71.18 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=38.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeee--EEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+... ....++++.+. ..+..+. .+.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 358999999999999999999997643 22333333222 1233332 478999999754
No 188
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.35 E-value=7.1e-07 Score=80.54 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=58.3
Q ss_pred CcEEEEEEecCCCCCC-CCHHH---HHhhCCCCEEEEEecCCCCChHHHHHHHHHHHH----c---CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLST-THPLM---DQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q---GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-~~~~l---~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~----~---~~~vi~~sa~~~~g 69 (256)
+|++|+|+||+.+.+. ...+. .+.++.+|+++|+||+|+++.+...++.+.+++ . +.+++++||++|.|
T Consensus 99 ~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 178 (403)
T 3sjy_A 99 MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN 178 (403)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcC
Confidence 6999999999987632 11111 122345799999999999988755544444332 1 35789999999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
+++|.+.+.+..+
T Consensus 179 i~~L~~~l~~~l~ 191 (403)
T 3sjy_A 179 IDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhCC
Confidence 9999988876543
No 189
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.35 E-value=4.1e-08 Score=91.70 Aligned_cols=57 Identities=30% Similarity=0.517 Sum_probs=44.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe----CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi~ 153 (256)
++.+|+++|.+|+|||||+|+|.+... .....||+|.+.....+ +..+.++||||.-
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 467899999999999999999997654 34467888888643322 3468999999964
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.35 E-value=1.1e-06 Score=70.88 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=38.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCccc-CCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
.++|+++|.+|||||||+|+|.+...... .+..|++.....+.++. .+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 57899999999999999999998654322 12223333333444443 356899999753
No 191
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=6.6e-07 Score=70.40 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHH----hh-CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQ----WL-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~----~l-~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+..+.+..+. .+.. .. .+.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 5899999999877543321 1111 11 3579999999999985421 2233333445567889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 164 l~~~l~~~~ 172 (180)
T 2g6b_A 164 AFTAIAKEL 172 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 192
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.34 E-value=9.1e-07 Score=71.72 Aligned_cols=83 Identities=16% Similarity=0.021 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----C-CCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----G-NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~-~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++|+|+|+.++.+..+. .+...+ . +.|+++|+||+|+.+... .....++.+..+.+++.+||+++.|++++
T Consensus 93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 6899999999876443221 111111 1 579999999999954321 12222233444677899999999999999
Q ss_pred HHHHHHHHhh
Q 025200 74 SRLAKALASD 83 (256)
Q Consensus 74 ~~~i~~l~~~ 83 (256)
.+.+.+...+
T Consensus 173 ~~~l~~~~~~ 182 (213)
T 3cph_A 173 FFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877665544
No 193
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=80.59 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=36.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEE--EEe-CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~ 153 (256)
+.++|+++|.+|||||||+|+|.+..... ..| |.+... +.. +..+.++||||-.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 45799999999999999999999866432 233 333332 222 3358999999954
No 194
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=5.7e-07 Score=71.64 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=55.7
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....+++.+++. ..+..++.+||++|.
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 689999999998754321 1222332 3579999999999976433334444432 234568889999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 164 gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 164 GLCQGLEWMMSRL 176 (187)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888776554
No 195
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.33 E-value=7.2e-07 Score=70.04 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHH----hhCCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQ----WLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~----~l~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.++.+..+.. +.. ...+.|+++|+||+|+.+... .....++....+.+++.+||++|.|++++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 58999999998764332211 111 122579999999999875432 22333344455678899999999999999
Q ss_pred HHHHHHHHhhh
Q 025200 74 SRLAKALASDV 84 (256)
Q Consensus 74 ~~~i~~l~~~~ 84 (256)
.+.+.+.....
T Consensus 162 ~~~l~~~~~~~ 172 (181)
T 3tw8_B 162 FNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877665443
No 196
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.32 E-value=4.4e-07 Score=73.82 Aligned_cols=82 Identities=12% Similarity=-0.039 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHH----------HHHHHHHHHHcCC-eEEEec
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD----------RNAWATYFAKQGT-KVIFSN 63 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~----------~~~w~~~~~~~~~-~vi~~s 63 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... ..+..++.+..+. .++.+|
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 5899999999876543221 122222 3689999999999975432 1222233344453 788999
Q ss_pred CcCCcchhHHHHHHHHHHh
Q 025200 64 GQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 64 a~~~~g~~~L~~~i~~l~~ 82 (256)
|++|.|++++.+.+.+...
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999998887765543
No 197
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.31 E-value=4.8e-07 Score=71.50 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+.....++.+++.. .+..++.+||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 589999999988744321 1233333 35799999999999765333444444322 22367889999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|++++.+.+.+...
T Consensus 166 gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 166 GITEGLDWLIDVIK 179 (183)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998887766543
No 198
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=3.2e-06 Score=74.97 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCCCCCC-C--HHHHH-h---hCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTT-H--PLMDQ-W---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~-~--~~l~~-~---l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|.+++|+|+..+.+.. . ..+.. . ..++|+++|+||+|+.+.....+..++++..+.+++++||++|.|++++
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l 326 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLV 326 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHH
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHH
Confidence 58999999987654211 1 11211 1 1278999999999999877666666666666778899999999999999
Q ss_pred HHHHHHHHhh
Q 025200 74 SRLAKALASD 83 (256)
Q Consensus 74 ~~~i~~l~~~ 83 (256)
.+.+.+....
T Consensus 327 ~~~i~~~l~~ 336 (357)
T 2e87_A 327 KEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.30 E-value=1.6e-06 Score=69.63 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=39.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+..... ..+..|++.....+.++. .+.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 35799999999999999999999865432 222223332333444443 245699999864
No 200
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.30 E-value=3.3e-06 Score=69.65 Aligned_cols=82 Identities=15% Similarity=0.046 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCCCCCCCHH---HHHhh-C---CCCEEEEEecCCCCChHHH-----HHHHHHHHHcC--CeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHPL---MDQWL-G---NRKRILVLNREDMISMADR-----NAWATYFAKQG--TKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~---l~~~l-~---~k~~ilVlNK~DL~~~~~~-----~~w~~~~~~~~--~~vi~~sa~~ 66 (256)
+|++|+|+|+.++.+..... +...+ . +.|+++|+||+|+.+...+ ....++....+ ..++.+||++
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 58999999999886654222 22222 2 6799999999999865322 12333334444 6788999999
Q ss_pred CcchhHHHHHHHHHHh
Q 025200 67 GMGTMKLSRLAKALAS 82 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~ 82 (256)
|.|++++.+.+.+...
T Consensus 189 g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 189 GVGVEQAKITACELLK 204 (228)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999998887766543
No 201
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.29 E-value=1.1e-06 Score=71.72 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=55.6
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... ..+..++.+..+..++.+||+++.|++
T Consensus 108 ~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187 (217)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHH
Confidence 6899999999876443211 111212 2568999999999975322 222333344556788999999999999
Q ss_pred HHHHHHHHHHhh
Q 025200 72 KLSRLAKALASD 83 (256)
Q Consensus 72 ~L~~~i~~l~~~ 83 (256)
++.+.+.+....
T Consensus 188 ~l~~~l~~~i~~ 199 (217)
T 2f7s_A 188 KAVETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877655433
No 202
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.29 E-value=4.8e-07 Score=71.81 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=52.6
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+||.+.....++.+++. ..+..++.+||++|.
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 689999999998744321 1233333 3579999999999976433333433332 123467889999999
Q ss_pred chhHHHHHHH
Q 025200 69 GTMKLSRLAK 78 (256)
Q Consensus 69 g~~~L~~~i~ 78 (256)
|++++.+.+.
T Consensus 169 gi~~l~~~l~ 178 (181)
T 2h17_A 169 GLCQGLEWMM 178 (181)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988877654
No 203
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.29 E-value=9.8e-08 Score=89.17 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=38.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc---------------c------CCCCCceeeeEEEEe---CCcEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP---------------A------APRPGVTRVLKWVRF---GKDLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~---------------~------~~~~g~T~~~~~~~~---~~~~~l~DtPGi 152 (256)
..+|+++|.+|+|||||+|+|....... + ...+|+|.......+ +..+.|+||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3579999999999999999996221110 1 112455654432222 446899999998
Q ss_pred CC
Q 025200 153 IP 154 (256)
Q Consensus 153 ~~ 154 (256)
..
T Consensus 93 ~d 94 (528)
T 3tr5_A 93 AD 94 (528)
T ss_dssp TT
T ss_pred hh
Confidence 65
No 204
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.28 E-value=6.8e-07 Score=71.41 Aligned_cols=81 Identities=7% Similarity=-0.045 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+.....++.+.+.. .+..++.+||++|.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 689999999987644321 1222332 35799999999999865333444444321 23467889999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 171 gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 171 NIDITLQWLIQHS 183 (188)
T ss_dssp THHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHH
Confidence 9998888766543
No 205
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.28 E-value=8.3e-07 Score=70.08 Aligned_cols=82 Identities=10% Similarity=-0.118 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCCCCCCC-----HHHHHhhC--CCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-----~~l~~~l~--~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+ ..+..... +.|+++|+||+|+.+.. ...+..++.+..+.+++.+||+++.|++
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 90 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 589999999987643211 11222222 67999999999997542 2344555556667788999999999999
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
++.+.+.+...
T Consensus 170 ~l~~~l~~~i~ 180 (187)
T 2a9k_A 170 KVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 206
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.28 E-value=7.6e-07 Score=68.85 Aligned_cols=80 Identities=10% Similarity=-0.116 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCCCCCCC-----HHHHHhhC--CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-----~~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+ ..+.+... +.|+++|+||+|+.+... .++..++.+..+.+++.+||++|.|++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 589999999987644221 11222222 679999999999975422 234444555567788999999999999
Q ss_pred HHHHHHHHH
Q 025200 72 KLSRLAKAL 80 (256)
Q Consensus 72 ~L~~~i~~l 80 (256)
++.+.+.+.
T Consensus 156 ~l~~~l~~~ 164 (168)
T 1u8z_A 156 KVFFDLMRE 164 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 207
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.28 E-value=6.9e-07 Score=70.34 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+... .++..++.+..+..++.+||++|.|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 689999999987654221 1111111 1568999999999975432 3344455556677889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 165 l~~~l~~~~ 173 (181)
T 2efe_B 165 IFYEIARRL 173 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 888776544
No 208
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.27 E-value=6e-07 Score=79.94 Aligned_cols=59 Identities=29% Similarity=0.366 Sum_probs=31.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC------CceeeeEE--EEe--C---CcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLKW--VRF--G---KDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~------g~T~~~~~--~~~--~---~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|+|||||+|+|.+......+..+ +.|..... ..+ . ..+.++||||+..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 3578999999999999999999876554333221 22332222 111 1 1478999999943
No 209
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.27 E-value=3e-07 Score=85.00 Aligned_cols=57 Identities=23% Similarity=0.454 Sum_probs=35.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC------cccCCCCCceeeeEE--EEeC-CcEEEEecCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRFG-KDLEFLDSPGI 152 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~------~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi 152 (256)
+.++|+++|.+|+|||||+|+|.+... ...+..+|+|.+... +..+ ..+.++||||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 368999999999999999999998661 234566788887642 3333 36899999996
No 210
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.27 E-value=6.1e-07 Score=80.82 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC----cc-----------cCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRM----CP-----------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~----~~-----------~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
.++|+++|.+|+|||||+|+|.+... .. .....|+|.+...... ...+.++||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 57899999999999999999987310 00 1124678877654444 3568999999974
No 211
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.27 E-value=7.6e-07 Score=80.47 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=31.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc--ccCCCCCceeeeE
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLK 136 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~--~~~~~~g~T~~~~ 136 (256)
..++|+++|.+|+|||||+|+|.+.... .....+|+|.+..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 4689999999999999999999975432 2233478887653
No 212
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.27 E-value=6.7e-07 Score=71.90 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+..++. +.|+++|+||+|+.+.....++.+.+.. .+..++.+||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 689999999988743221 12333332 5799999999999765434444444322 23457889999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 177 gi~~l~~~l~~~ 188 (192)
T 2b6h_A 177 GLYDGLDWLSHE 188 (192)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999888776543
No 213
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.26 E-value=1.6e-06 Score=70.66 Aligned_cols=83 Identities=6% Similarity=-0.048 Sum_probs=55.6
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC-CCCEEEEEecCCCCChHHH-HH-HHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR-NA-WATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~~~~~-~~-w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+..... +.|+++|+||+|+.+.... .+ ..++.+..+..++.+||++|.|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 6899999999977554332 1111222 4799999999999865322 22 2233344567899999999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+....
T Consensus 165 l~~~l~~~~~~ 175 (218)
T 4djt_A 165 PFLHLARIFTG 175 (218)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 98887765543
No 214
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.26 E-value=2.3e-06 Score=79.94 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=46.4
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhccCCCCCceEEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceeeeE------EEE
Q 025200 67 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK------WVR 139 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~~~------~~~ 139 (256)
..|.+.+.+.++++...... .........++|+++|.||||||||+|+|.+.+.. ...+..|.+.... .+.
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~ 90 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGT
T ss_pred HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccccee
Confidence 34666777776665432110 01111245789999999999999999999986532 1112222221111 011
Q ss_pred e-----CCcEEEEecCCCC
Q 025200 140 F-----GKDLEFLDSPGII 153 (256)
Q Consensus 140 ~-----~~~~~l~DtPGi~ 153 (256)
+ ...+.++||||.-
T Consensus 91 ~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 91 NDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp TCSTTTTCEEEEECCCSCC
T ss_pred ecCCCceEEEEEEECCcHH
Confidence 1 2458999999954
No 215
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.25 E-value=5.1e-07 Score=82.97 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=60.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+|++++|+|+..+.+..+..+.+.+.++|+++|+||+|+.+........+ +. .+.+++.+||++|.|+++|.+.+.+.
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~-~~-~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEY-PE-NITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCC-CT-TCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHH-hc-cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999988776666777777899999999999987654321000 00 23568899999999999998887665
Q ss_pred H
Q 025200 81 A 81 (256)
Q Consensus 81 ~ 81 (256)
.
T Consensus 382 ~ 382 (462)
T 3geh_A 382 V 382 (462)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.25 E-value=1.3e-06 Score=68.47 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHH----hh-CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQ----WL-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~----~l-~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+..+.+..+.. +.. .. .+.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|+++
T Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 58999999998775433221 111 11 2578999999999965322 2344445556678889999999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 168 l~~~l~~ 174 (179)
T 1z0f_A 168 AFLEAAK 174 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 217
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.24 E-value=1.8e-07 Score=85.91 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=40.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-Cc-------------cc----------------CCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MC-------------PA----------------APRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~-------------~~----------------~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|.+|+|||||+|+|.+.. .. .. ...+|+|.+.....+ ..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999998631 00 00 113678876543333 33
Q ss_pred cEEEEecCCCC
Q 025200 143 DLEFLDSPGII 153 (256)
Q Consensus 143 ~~~l~DtPGi~ 153 (256)
.+.++||||..
T Consensus 86 ~~~iiDtPGh~ 96 (458)
T 1f60_A 86 QVTVIDAPGHR 96 (458)
T ss_dssp EEEEEECCCCT
T ss_pred eEEEEECCCcH
Confidence 58999999964
No 218
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.24 E-value=1.6e-06 Score=73.17 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCC--CCCCCH-H-HHHh-----hCCCCEEEEEecCCCCChHHHHHHHHHHHH-cCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIP--LSTTHP-L-MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p--~~~~~~-~-l~~~-----l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-~~~~vi~~sa~~~~g~ 70 (256)
+|++|+|+|+.++ .+..+. . +..+ ..+.|+++|.||+||.+...+++..++.+. .+..++.+||+++.|+
T Consensus 163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred CCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 5999999999887 332211 1 1111 135799999999999876655554444444 3567889999999999
Q ss_pred hHHHHHHHHH
Q 025200 71 MKLSRLAKAL 80 (256)
Q Consensus 71 ~~L~~~i~~l 80 (256)
+++.+.+.+.
T Consensus 243 ~elf~~l~~~ 252 (255)
T 3c5h_A 243 DLAFSTLVQL 252 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 219
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.23 E-value=1.4e-06 Score=67.49 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHH----hhCCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQ----WLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~----~l~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.++.+..+. .+.. ...+.|+++|+||+|+.+... .++..++.++.+.+++.+||+++.|++++
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 6899999999876543221 1111 123689999999999975321 23333444555778899999999999988
Q ss_pred HHHHHHH
Q 025200 74 SRLAKAL 80 (256)
Q Consensus 74 ~~~i~~l 80 (256)
.+.+.+.
T Consensus 158 ~~~l~~~ 164 (168)
T 1z2a_A 158 FKYLAEK 164 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 220
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.55 E-value=1.4e-07 Score=76.39 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=37.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEe-C--CcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-G--KDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||+|++.+... .....++|.+.. .+.. + -.+.++||||...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 468899999999999999999986543 222233332221 1111 1 2356999999753
No 221
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.23 E-value=2.2e-06 Score=67.66 Aligned_cols=81 Identities=16% Similarity=0.033 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCc-CCcch
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ-LGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~-~~~g~ 70 (256)
+|++++|+|+.++.+..+. . +.+.. .+.|+++|+||+|+.+... .++..++.+..+..++.+||+ ++.|+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 6899999999877443221 1 11111 2579999999999975321 122223334446778999999 99999
Q ss_pred hHHHHHHHHHH
Q 025200 71 MKLSRLAKALA 81 (256)
Q Consensus 71 ~~L~~~i~~l~ 81 (256)
+++.+.+.+..
T Consensus 170 ~~l~~~l~~~i 180 (183)
T 3kkq_A 170 DKTFHDLVRVI 180 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887766543
No 222
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.23 E-value=1.4e-06 Score=78.73 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=29.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc--cCCCCCceeeeE
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLK 136 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~--~~~~~g~T~~~~ 136 (256)
..++|+++|.+|+|||||+|+|.+..... ....+|+|.+..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 49 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG 49 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence 46899999999999999999999754322 234478887653
No 223
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.23 E-value=9.5e-07 Score=80.47 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
..++|+++|.+|+|||||+|+|.+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998653
No 224
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.23 E-value=1.8e-06 Score=71.28 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=35.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeeeEEEEeCC---cEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~~ 154 (256)
+.++|+++|.+|||||||++++....-.. ..+..|.......+..+. .+.++||+|--.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 35799999999999999999998654311 112223222222333332 367999999753
No 225
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.22 E-value=2.7e-06 Score=67.15 Aligned_cols=83 Identities=8% Similarity=-0.026 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|+++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 6899999999876442111 111111 2579999999999975321 2223333445577889999999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+....
T Consensus 161 l~~~l~~~i~~ 171 (183)
T 2fu5_C 161 AFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877655443
No 226
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.22 E-value=1.9e-06 Score=76.47 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHc-----------CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-----------GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-----------~~~vi~~sa~~~~g 69 (256)
+|++++|+|+...... ..+...+.++|.++|+||+|+.+........+.+++. +.+++.+||++|.|
T Consensus 193 aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 193 VDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp CSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred CCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 6999999997643221 1221222357999999999998665444333333321 35789999999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
+++|.+.+.+...
T Consensus 271 i~~L~~~i~~~~~ 283 (355)
T 3p32_A 271 LAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876654
No 227
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.22 E-value=2.2e-06 Score=74.26 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=40.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeE--EEEeCC-c--EEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK-D--LEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~-~--~~l~DtPGi~~ 154 (256)
..++|+++|.+|||||||+|++.+... .+..+++|.+.. .+..+. . +.++||||...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 468999999999999999999997543 334455555432 223332 2 55999999753
No 228
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.21 E-value=1.2e-06 Score=68.92 Aligned_cols=79 Identities=14% Similarity=-0.099 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHHH------------HHHHHHHHHcCC-eEEE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR------------NAWATYFAKQGT-KVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~------------~~w~~~~~~~~~-~vi~ 61 (256)
+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.... ++..++.+..+. .++.
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 5899999999876543221 122222 36899999999999754331 222223334454 7889
Q ss_pred ecCcCCcchhHHHHHHHH
Q 025200 62 SNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~~ 79 (256)
+||++|.|++++.+.+.+
T Consensus 160 ~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999988877654
No 229
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.21 E-value=5.8e-07 Score=81.10 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=42.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC---CC--cc------c-----CCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR---RM--CP------A-----APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~---~~--~~------~-----~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
..++|+++|.+|+|||||+|+|.+. .. .. . ...+|+|.+...... ...+.++||||...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 4689999999999999999999873 10 00 0 113577776654433 35689999999864
No 230
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.20 E-value=2.7e-06 Score=65.75 Aligned_cols=80 Identities=9% Similarity=-0.113 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHc-CCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-GTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~-~~~vi~~sa~~~~g~ 70 (256)
+|++++|+|+.++.+..+. . +.+.. .+.|+++|+||+|+.+... .++..++.+.. +..++.+||++|.|+
T Consensus 75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 5899999999876443221 1 12221 2689999999999965422 12222333343 577889999999999
Q ss_pred hHHHHHHHHH
Q 025200 71 MKLSRLAKAL 80 (256)
Q Consensus 71 ~~L~~~i~~l 80 (256)
+++.+.+.+.
T Consensus 155 ~~l~~~l~~~ 164 (167)
T 1c1y_A 155 NEIFYDLVRQ 164 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988776543
No 231
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.20 E-value=5.7e-07 Score=73.74 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|+|+..+.+..+. . +.+...+.|+++|+||+|+.+.....+..++.+..+..++.+||++|.|++++.+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 6899999999976543321 1 1122236899999999999765432233334445577889999999999998887
Q ss_pred HHHHH
Q 025200 76 LAKAL 80 (256)
Q Consensus 76 ~i~~l 80 (256)
.+.+.
T Consensus 168 ~l~~~ 172 (221)
T 3gj0_A 168 WLARK 172 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 232
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.20 E-value=2.1e-07 Score=86.18 Aligned_cols=59 Identities=27% Similarity=0.437 Sum_probs=44.0
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+++.+|+++|.+|+|||||+|+|.+.. ...+..+|+|.+.....+ +..+.++||||...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 356789999999999999999998743 234555788876543332 34689999999753
No 233
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.20 E-value=2.7e-06 Score=67.82 Aligned_cols=82 Identities=11% Similarity=-0.037 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.+..+..++.+||++|.|+++
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 6899999999876443221 111111 2579999999999975422 2233333445577889999999999999
Q ss_pred HHHHHHHHHh
Q 025200 73 LSRLAKALAS 82 (256)
Q Consensus 73 L~~~i~~l~~ 82 (256)
+.+.+.+...
T Consensus 175 l~~~l~~~i~ 184 (189)
T 2gf9_A 175 VFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 234
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=1.3e-06 Score=76.98 Aligned_cols=24 Identities=54% Similarity=0.833 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
....++++|.||+|||||+|.|.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999983
No 235
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.20 E-value=6.7e-07 Score=79.91 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+|+++|.+|+|||||+|+|. ..|+|.+...... +..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 79999999999999999998 4567766654443 34689999999854
No 236
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.19 E-value=2.7e-06 Score=67.89 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh----C-CCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL----G-NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l----~-~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ . +.|+++|+||+|+.+.... ....++.+..+.+++.+||+++.|+++
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 6899999999876443221 111111 2 5799999999999765321 223333445567889999999999998
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+....
T Consensus 169 l~~~l~~~i~~ 179 (196)
T 3tkl_A 169 SFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776655433
No 237
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.19 E-value=1.3e-06 Score=68.35 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCCCCCCCH-H-HHHh---h-CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L-MDQW---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~-l~~~---l-~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+..+.+..+. . +..+ . .+.|+++|+||+|+.+... ..+..++.+..+..++.+||+++.|+++
T Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 6899999999876443221 1 1111 1 2578999999999975432 2344445555677889999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 167 l~~~l~~~ 174 (179)
T 2y8e_A 167 LFRRVAAA 174 (179)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88876654
No 238
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=2.8e-06 Score=67.91 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCCCCCCCH--HH----HHhhCCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~~-~v 59 (256)
+|++|+|+|+.++.+..+. .+ .+...+.|+++|+||+|+.+... .++..++.+..+. .+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 6899999999877442221 12 12223689999999999976421 1222223333454 78
Q ss_pred EEecCcCCcchhHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~ 79 (256)
+.+||++|.|++++.+.+.+
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 89999999999988876654
No 239
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.19 E-value=2.7e-06 Score=67.93 Aligned_cols=81 Identities=14% Similarity=0.020 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.++.+..++.+||+++.|+++
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 6899999999876543221 111111 2578999999999965321 2223334445577889999999999998
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 174 l~~~l~~~i 182 (191)
T 2a5j_A 174 AFINTAKEI 182 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765543
No 240
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.18 E-value=1e-06 Score=84.86 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=36.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-----------ccCC------CCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-----------~~~~------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+..+|+++|.+|+|||||+|+|.+.... .+.+ .+|+|.......+ +..+.++||||...
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3568999999999999999999842111 1111 3566665433222 34689999999975
No 241
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.18 E-value=3e-06 Score=68.16 Aligned_cols=82 Identities=10% Similarity=-0.114 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC--CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+. .+..... +.|+++|+||+|+.+... .++..++.+..+..++.+||++|.|++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 5899999999876432111 1222222 679999999999975422 334444455567788999999999999
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
++.+.+.+...
T Consensus 166 ~l~~~l~~~i~ 176 (206)
T 2bov_A 166 KVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 242
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.18 E-value=2.6e-06 Score=66.54 Aligned_cols=82 Identities=15% Similarity=-0.026 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++...+....+..++.+||++|.|++
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 5899999999876442211 111111 2579999999999975422 122222333456788999999999999
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
++.+.+.+...
T Consensus 158 ~l~~~l~~~~~ 168 (175)
T 2nzj_A 158 ELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 243
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.18 E-value=2.4e-06 Score=74.05 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=60.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCC-hHHHHHHHHHHHH-cCC-eEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~-~~~~~~w~~~~~~-~~~-~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+.. ++.....+.+.+. ++|.++|+||+|+.. +....++.+.+.+ .+. .++++||+++.|+++|.+
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHH
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHH
Confidence 589999999987 5544444555554 689999999999987 5555556665554 343 688999999999999988
Q ss_pred HHHHHHh
Q 025200 76 LAKALAS 82 (256)
Q Consensus 76 ~i~~l~~ 82 (256)
.+.+.++
T Consensus 168 ~i~~~l~ 174 (301)
T 1ega_A 168 IVRKHLP 174 (301)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8776544
No 244
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.17 E-value=3.4e-06 Score=77.88 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHHH----HHHHHHHHc----CCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~----~w~~~~~~~----~~~vi~~sa~~~~g~ 70 (256)
+|++|+|+||+.+......+...++ .+.|.++|+||+|+.+++..+ +..++++.. +.+++++||++|.|+
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCH
Confidence 6999999999986543222222222 267889999999999865432 333444444 367899999999999
Q ss_pred hHHHHHHHHHHh
Q 025200 71 MKLSRLAKALAS 82 (256)
Q Consensus 71 ~~L~~~i~~l~~ 82 (256)
++|.+.+.+..+
T Consensus 177 ~~L~~~L~~~i~ 188 (482)
T 1wb1_A 177 DELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999988877654
No 245
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.17 E-value=2.3e-06 Score=66.44 Aligned_cols=82 Identities=16% Similarity=0.005 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .+...++.++.+..++.+||++|.|++++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 5899999999876543221 121111 2579999999999954321 22333334455678899999999999998
Q ss_pred HHHHHHHHh
Q 025200 74 SRLAKALAS 82 (256)
Q Consensus 74 ~~~i~~l~~ 82 (256)
.+.+.+...
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 246
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.17 E-value=2.8e-06 Score=67.17 Aligned_cols=83 Identities=12% Similarity=-0.060 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhh--CCCCEEEEEecCCCCChHHHH-HHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l--~~k~~ilVlNK~DL~~~~~~~-~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+..+. . +.... .+.|+++|+||+|+.+..... ...++.+..+.+++.+||++|.|+++
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155 (189)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 5899999999876432111 1 11111 257999999999997543222 22223334467789999999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.+....
T Consensus 156 l~~~l~~~~~~ 166 (189)
T 4dsu_A 156 AFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 247
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.17 E-value=9.9e-07 Score=79.57 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRM 122 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~ 122 (256)
..++|+++|.+|+|||||+|+|++...
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 468999999999999999999998543
No 248
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.17 E-value=5.3e-06 Score=65.03 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCCH-H----HHHhh-----CCCCEEEEEecCCCCChHH---HHHHHHHHH-HcCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHP-L----MDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFA-KQGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~----l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~~~-~~~~~vi~~sa~~ 66 (256)
+|++|+|+|+.++.+..+. . +.... .+.|+++|+||+|+.+... .++..++.+ ..+..++.+||++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 82 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence 5899999999877543221 1 11111 3579999999999964321 122222222 2346788999999
Q ss_pred CcchhHHHHHHHHHH
Q 025200 67 GMGTMKLSRLAKALA 81 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~ 81 (256)
|.|++++.+.+.+..
T Consensus 162 ~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 162 AINVDTAFEEIARSA 176 (182)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888776544
No 249
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.17 E-value=2.7e-06 Score=67.84 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHhh--CCCCEEEEEecCCCCChH-HHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQWL--GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~l--~~k~~ilVlNK~DL~~~~-~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++|+|+|+..+.+..+. .+ ..+. .+.|+++|+||+|+.... ..++..++.++.+..++.+||+++.|++++.+
T Consensus 117 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 117 ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 6899999999887543221 11 1111 258999999999942221 23455556666778899999999999999888
Q ss_pred HHHHHH
Q 025200 76 LAKALA 81 (256)
Q Consensus 76 ~i~~l~ 81 (256)
.+.+..
T Consensus 197 ~l~~~~ 202 (208)
T 3clv_A 197 MLAEEI 202 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 250
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.16 E-value=1.7e-06 Score=68.24 Aligned_cols=81 Identities=17% Similarity=0.012 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHHH--------------HHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~--------------~~w~~~~~~~~~-~v 59 (256)
+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.... .+..++.+..+. .+
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 6899999999876443221 122222 26899999999999764321 122333344454 78
Q ss_pred EEecCcCCcchhHHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~ 81 (256)
+.+||++|.|++++.+.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCccCHHHHHHHHHHHH
Confidence 9999999999999888776554
No 251
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.16 E-value=2.2e-06 Score=68.96 Aligned_cols=81 Identities=12% Similarity=-0.038 Sum_probs=46.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh--------CCCCEEEEEecCCCCC-hHH--HHHHHHHHHHcCCeEEEecCcC-C
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL--------GNRKRILVLNREDMIS-MAD--RNAWATYFAKQGTKVIFSNGQL-G 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l--------~~k~~ilVlNK~DL~~-~~~--~~~w~~~~~~~~~~vi~~sa~~-~ 67 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+ ... .++..++.++.+..++.+||++ +
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 6899999999877542211 111111 3679999999999986 322 2344445556677889999999 9
Q ss_pred cchhHHHHHHHHHH
Q 025200 68 MGTMKLSRLAKALA 81 (256)
Q Consensus 68 ~g~~~L~~~i~~l~ 81 (256)
.|++++.+.+.+..
T Consensus 177 ~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 177 KDADAPFLSIATTF 190 (208)
T ss_dssp ---CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999887766544
No 252
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.16 E-value=1.5e-06 Score=67.11 Aligned_cols=81 Identities=14% Similarity=-0.078 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+++|+|+.++.+..+. .+.+.. .+.|+++|+||+|+.+..+ ..+..++.++.+.+++.+||++|.|++
T Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154 (167)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHH
Confidence 5899999999876442211 122222 2689999999999975432 122233344456778999999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 155 ~l~~~l~~~~ 164 (167)
T 1kao_A 155 ELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766543
No 253
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.15 E-value=2.9e-06 Score=69.35 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHHHH--------------HHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADRN--------------AWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~--------------~w~~~~~~~~~-~v 59 (256)
+|++|+|+|+.++.+..+. .+... ..+.|+++|+||+|+.+..... +..++.+..+. .+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 5899999999876443221 12111 2368999999999998654321 12233344454 78
Q ss_pred EEecCcCCcchhHHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~ 81 (256)
+.+||++|.|++++.+.+.+..
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 8999999999999888766544
No 254
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.15 E-value=2e-06 Score=77.75 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=57.3
Q ss_pred CcEEEEEEecCCCC-CCCCHH---HHHhhCCCCEEEEEecCCCCChHH----HHHHHHHHHH---cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPL-STTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK---QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-~~~~~~---l~~~l~~k~~ilVlNK~DL~~~~~----~~~w~~~~~~---~~~~vi~~sa~~~~g 69 (256)
+|++|+|+||+.+. .....+ +...++.+|+++|+||+|+.+.+. .+++.++++. .+.+++++||++|.|
T Consensus 107 ~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g 186 (410)
T 1kk1_A 107 MDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 186 (410)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred CCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCC
Confidence 59999999999764 211111 222234568999999999998653 2344455543 246789999999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
+++|.+.+.+..+
T Consensus 187 i~~L~~~l~~~~~ 199 (410)
T 1kk1_A 187 IDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 9999888876443
No 255
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.15 E-value=2.5e-06 Score=67.76 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHH-----HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~-----~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+.+. ..+..++.+||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 689999999987744322 1233332 2579999999999976543344444332 123457889999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 164 gi~~l~~~l~~~ 175 (181)
T 1fzq_A 164 GVQDGMNWVCKN 175 (181)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999888776554
No 256
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.15 E-value=4e-06 Score=65.11 Aligned_cols=80 Identities=18% Similarity=0.012 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+. .+..+. .+.|+++|+||+|+.+... .++..++.+..+..++.+||+++.|++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHH
Confidence 5899999999876443221 122222 1579999999999974321 222333444557788999999999999
Q ss_pred HHHHHHHHH
Q 025200 72 KLSRLAKAL 80 (256)
Q Consensus 72 ~L~~~i~~l 80 (256)
++.+.+.+.
T Consensus 156 ~l~~~l~~~ 164 (169)
T 3q85_A 156 ELFEGAVRQ 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 257
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.14 E-value=5.6e-06 Score=65.01 Aligned_cols=78 Identities=15% Similarity=0.033 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhh----CCCCEEEEEecCCCC-------ChHHHHHHHHHHHHc-CCeEEEec
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNREDMI-------SMADRNAWATYFAKQ-GTKVIFSN 63 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l----~~k~~ilVlNK~DL~-------~~~~~~~w~~~~~~~-~~~vi~~s 63 (256)
+|++|+|+|+.++.+..+.. +.... .+.|+++|.||+|+. +.++..+|. +.. +..++.+|
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~---~~~~~~~~~~~S 149 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX---ADMKRCSYYETX 149 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH---HHHSSEEEEEEB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH---HhhcCCeEEEEe
Confidence 68999999998775432221 11111 256999999999993 223333333 332 46788999
Q ss_pred CcCCcchhHHHHHHHHHH
Q 025200 64 GQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 64 a~~~~g~~~L~~~i~~l~ 81 (256)
|++|.|++++.+.+.+..
T Consensus 150 a~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999999999887765544
No 258
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.13 E-value=2.5e-06 Score=68.57 Aligned_cols=82 Identities=12% Similarity=-0.040 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHH----hhCCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~----~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~~-~v 59 (256)
+|++|+|+|+.++.+..+. .+.. ...+.|+++|+||+|+.+... .++..++.+..+. .+
T Consensus 92 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 92 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 6899999999876543221 1211 123689999999999975311 1112222233354 78
Q ss_pred EEecCcCCcchhHHHHHHHHHHh
Q 025200 60 IFSNGQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~~ 82 (256)
+.+||++|.|++++.+.+.+...
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHh
Confidence 89999999999998887665443
No 259
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.13 E-value=8.5e-07 Score=68.79 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+..+.+..+. .+..+. .+.|+++|.||+|+.+... .++..++.+..+..++.+||++|.|+++
T Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 6899999999876432111 111111 2468899999999965322 2333444455677888999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 159 l~~~i~~~ 166 (170)
T 1r2q_A 159 IFMAIAKK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88776543
No 260
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.13 E-value=1.7e-06 Score=76.66 Aligned_cols=23 Identities=52% Similarity=0.713 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHh
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~ 118 (256)
+...|+++|.||||||||+|+|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999996
No 261
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.13 E-value=2.8e-06 Score=68.05 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHH-cCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~-~~~~vi~~sa~~~~g~~ 71 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.+. .+..++.+||++|.|++
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 6899999999887554332 111111 2578999999999975422 1222223333 25678899999999999
Q ss_pred HHHHHHHHH
Q 025200 72 KLSRLAKAL 80 (256)
Q Consensus 72 ~L~~~i~~l 80 (256)
++.+.+.+.
T Consensus 179 ~l~~~l~~~ 187 (192)
T 2il1_A 179 EIFLKLVDD 187 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 262
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.13 E-value=1.9e-06 Score=66.83 Aligned_cols=80 Identities=10% Similarity=-0.041 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+..+. .+...+ ...|+++|.||+|+.+..+ .+...++.+..+..++.+||+++.|+++
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 5899999999876543221 121212 2468899999999975432 1222233345567889999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 159 l~~~i~~~ 166 (170)
T 1z0j_A 159 LFIEISRR 166 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 263
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.13 E-value=3.9e-06 Score=67.00 Aligned_cols=81 Identities=10% Similarity=-0.073 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+. .+...+ .+.|+++|+||+||.+... ..+..++.+..+..++.+||+++.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5899999999876543221 121112 2568999999999975321 2333334455677889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 178 l~~~l~~~i 186 (193)
T 2oil_A 178 AFETVLKEI 186 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766544
No 264
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.13 E-value=3.9e-06 Score=67.62 Aligned_cols=82 Identities=11% Similarity=-0.023 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhh-----CCCCEEEEEecCCCCChHH-HHHHHHHHH-HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l-----~~k~~ilVlNK~DL~~~~~-~~~w~~~~~-~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+.. +.... .+.|+++|+||+|+.+... .+...++.+ ..+..++.+||++|.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 68999999998775432221 11112 2579999999999975432 223333333 345678999999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|++++.+.+.+...
T Consensus 161 gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 161 NVEQAFQTIARNAL 174 (207)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998887765543
No 265
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.12 E-value=2.3e-06 Score=77.32 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCC-CCCHH---HHHhhCCCCEEEEEecCCCCChHH----HHHHHHHHHH---cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLS-TTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK---QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~-~~~~~---l~~~l~~k~~ilVlNK~DL~~~~~----~~~w~~~~~~---~~~~vi~~sa~~~~g 69 (256)
+|++|+|+||+.+.. ....+ +.+.++.+|+++|+||+|+.+.+. .+++.+++++ .+.+++++||++|.|
T Consensus 105 ~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g 184 (408)
T 1s0u_A 105 MDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEAN 184 (408)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------C
T ss_pred CCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCC
Confidence 599999999998752 11111 222234568999999999987542 3444455543 246789999999999
Q ss_pred hhHHHHHHHHHHh
Q 025200 70 TMKLSRLAKALAS 82 (256)
Q Consensus 70 ~~~L~~~i~~l~~ 82 (256)
+++|.+.+.+..+
T Consensus 185 i~~L~~~l~~~i~ 197 (408)
T 1s0u_A 185 IDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 9999888876443
No 266
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.12 E-value=2.3e-06 Score=68.46 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHh----hCCCCEEEEEecCCCCChH----HHHHHHHHHHHcCCe-EEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISMA----DRNAWATYFAKQGTK-VIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~----l~~k~~ilVlNK~DL~~~~----~~~~w~~~~~~~~~~-vi~~sa~~~~g 69 (256)
+|++++|+|+.++.+..+ ..+... ..+.|+++|+||+|+.+.. ..++..++.+..+.. ++.+||++|.|
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 589999999987744322 112222 2367999999999997531 122233333444655 88999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++++.+.+.+..
T Consensus 175 i~~l~~~l~~~i 186 (194)
T 3reg_A 175 LNEVFEKSVDCI 186 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887765543
No 267
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.12 E-value=3.8e-06 Score=67.79 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHHHH--------------HHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADRN--------------AWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~--------------~w~~~~~~~~~-~v 59 (256)
+|++|+|+|+.++.+..+. .+... ..+.|+++|+||+|+.+..... +..++.+..+. .+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 6899999999876432221 12222 2368999999999998653221 22233334454 78
Q ss_pred EEecCcCCcchhHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l 80 (256)
+.+||++|.|++++.+.+.+.
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 889999999999988876553
No 268
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.12 E-value=2.6e-06 Score=66.77 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHh---h--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~---l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+... .....++....+..++.+||++|.|++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 589999999987643221 111122 1 2679999999999975432 122333334556788999999999999
Q ss_pred HHHHHHHHHHh
Q 025200 72 KLSRLAKALAS 82 (256)
Q Consensus 72 ~L~~~i~~l~~ 82 (256)
++.+.+.+...
T Consensus 161 ~l~~~l~~~~~ 171 (181)
T 2fn4_A 161 EAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 269
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.12 E-value=1.4e-06 Score=81.45 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=35.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc---------------cc------CCCCCceeeeEEEE---eCCcEEEEecCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWVR---FGKDLEFLDSPGI 152 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~---------------~~------~~~~g~T~~~~~~~---~~~~~~l~DtPGi 152 (256)
..+|+++|.+|+|||||+|+|...... .+ ....|+|....... -+..+.++||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 468999999999999999999863211 01 12345554432222 2346899999998
Q ss_pred CC
Q 025200 153 IP 154 (256)
Q Consensus 153 ~~ 154 (256)
..
T Consensus 93 ~d 94 (529)
T 2h5e_A 93 ED 94 (529)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 270
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.12 E-value=4.2e-06 Score=67.64 Aligned_cols=81 Identities=10% Similarity=-0.059 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCC-eEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGT-KVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~-~vi~~sa~~~~g~~ 71 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.+..+. .++.+||+++.|++
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 6899999999876543221 111111 3578999999999975321 2333344455566 88999999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 182 ~l~~~l~~~i 191 (201)
T 2hup_A 182 EAFLRVATEL 191 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888766544
No 271
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.12 E-value=4e-06 Score=64.94 Aligned_cols=81 Identities=17% Similarity=0.018 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|.|+.++.+..+. .+..+. .+.|+++|+||+|+.+... ...-.++....+.+++.+||++|.|++
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Confidence 5899999999877442211 111111 2579999999999975432 122222334456788999999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 153 ~l~~~l~~~~ 162 (166)
T 3q72_A 153 ALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776544
No 272
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.11 E-value=3.1e-06 Score=66.34 Aligned_cols=81 Identities=16% Similarity=0.046 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-------CCCC-EEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-------GNRK-RILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-------~~k~-~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++++|+|+.++.+..+. .+...+ ...| +++|+||+|+.+... .++..++.+..+..++.+||++|.|
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159 (178)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 6899999999877553222 111111 1456 789999999965321 1223333445577889999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++++.+.+.+..
T Consensus 160 i~~l~~~l~~~~ 171 (178)
T 2hxs_A 160 VFLCFQKVAAEI 171 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888766543
No 273
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.11 E-value=2.3e-06 Score=75.44 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+...|+++|.||+||||++|.|.+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999963
No 274
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.11 E-value=4.7e-06 Score=66.22 Aligned_cols=82 Identities=12% Similarity=-0.022 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhhC--CCCEEEEEecCCCCChH-HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~-~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+..+. .+..... +.|+++|+||+|+.+.. ..++..++.++.+.+++.+|++++.|+++
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 5899999999876442211 1111222 57999999999997632 12223333444567889999999999999
Q ss_pred HHHHHHHHHh
Q 025200 73 LSRLAKALAS 82 (256)
Q Consensus 73 L~~~i~~l~~ 82 (256)
+.+.+.+...
T Consensus 173 l~~~l~~~~~ 182 (190)
T 3con_A 173 AFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 275
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.11 E-value=5.5e-06 Score=63.63 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCCCCCC-HH----HHHhhC--CCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PL----MDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~----l~~~l~--~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.+++|+|+.++.+..+ .. +..... +.|+++|+||+|+.+... .+...++.++.+.+++.+|++++.|+++
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 589999999886643211 11 111122 589999999999986422 2223333344567889999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 155 l~~~l~~~ 162 (166)
T 2ce2_X 155 AFYTLVRE 162 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776554
No 276
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=3e-06 Score=67.84 Aligned_cols=81 Identities=14% Similarity=-0.006 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChH--HHHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.. ..++..++.++.+..++.+||+++.|+++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 5899999999876442211 111111 257999999999997532 23445555556677889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 176 l~~~l~~~i 184 (192)
T 2fg5_A 176 LFQGISRQI 184 (192)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 888776543
No 277
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.10 E-value=4.3e-06 Score=67.50 Aligned_cols=82 Identities=11% Similarity=-0.054 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+. .+...+ .+.|+++|+||+|+.+... .+...++....+..++.+||++|.|+++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 5899999999876543211 111111 2578999999999976421 1222333445567889999999999999
Q ss_pred HHHHHHHHHh
Q 025200 73 LSRLAKALAS 82 (256)
Q Consensus 73 L~~~i~~l~~ 82 (256)
+.+.+.+...
T Consensus 161 l~~~l~~~i~ 170 (206)
T 2bcg_Y 161 AFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 278
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.09 E-value=3.4e-06 Score=68.09 Aligned_cols=81 Identities=10% Similarity=-0.093 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... ..+..++.+..+..++.+||++|.|+++
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 6899999999876543221 111111 2578999999999964322 2344445556677889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 178 l~~~l~~~i 186 (200)
T 2o52_A 178 AFLKCARTI 186 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766544
No 279
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=6.2e-06 Score=65.83 Aligned_cols=81 Identities=14% Similarity=-0.046 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+... ..+...+.+..+..++.+||++|.|+++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 689999999987644322 1122222 2579999999999964321 1222223344567889999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 176 l~~~l~~~i 184 (191)
T 3dz8_A 176 AFERLVDAI 184 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766544
No 280
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.09 E-value=8.6e-07 Score=80.81 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=35.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC-Cc-----------------------------ccCCCCCceeeeEEEEe---CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~-~~-----------------------------~~~~~~g~T~~~~~~~~---~~ 142 (256)
..++|+++|.+|+|||||+|+|.... .. .....+|+|.+...... +.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 36799999999999999999998531 00 01125788877653332 34
Q ss_pred cEEEEecCCCCC
Q 025200 143 DLEFLDSPGIIP 154 (256)
Q Consensus 143 ~~~l~DtPGi~~ 154 (256)
.+.++||||...
T Consensus 85 ~~~iiDtpG~~~ 96 (435)
T 1jny_A 85 FFTIIDAPGHRD 96 (435)
T ss_dssp EEEECCCSSSTT
T ss_pred EEEEEECCCcHH
Confidence 689999999754
No 281
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=2.4e-06 Score=66.29 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHH----hh---CCCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQ----WL---GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~----~l---~~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~ 70 (256)
+|++++|+|+.++.+..+ ..+.. .. .+.|+++|+||+|+.+.... ....++.+..+.+++.+||++|.|+
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 75 GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNV 154 (172)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence 589999999987644322 12211 11 25799999999999754321 1222233444678889999999999
Q ss_pred hHHHHHHHHHH
Q 025200 71 MKLSRLAKALA 81 (256)
Q Consensus 71 ~~L~~~i~~l~ 81 (256)
+++.+.+.+..
T Consensus 155 ~~l~~~l~~~~ 165 (172)
T 2erx_A 155 KELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99888776543
No 282
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.08 E-value=6.2e-06 Score=65.76 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh------CCCCEEEEEecCCCCCh--H--HHHHHHHHHHHcC-CeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISM--A--DRNAWATYFAKQG-TKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l------~~k~~ilVlNK~DL~~~--~--~~~~w~~~~~~~~-~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+ ..+...+ .+.|+++|.||+||... . ..++..++.++.+ ..++.+||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 589999999987754332 2222222 24699999999999421 1 1122223334444 678899999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 166 gv~~lf~~l~~~i 178 (184)
T 3ihw_A 166 NVERVFQDVAQKV 178 (184)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9998887765543
No 283
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.08 E-value=5.1e-06 Score=66.84 Aligned_cols=81 Identities=12% Similarity=-0.044 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .+...++.+..+..++.+||++|.|+++
T Consensus 81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 6899999999876432111 111111 2579999999999976421 2223333344567889999999999998
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 161 l~~~l~~~i 169 (203)
T 1zbd_A 161 TFERLVDVI 169 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766544
No 284
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.08 E-value=4.8e-07 Score=71.52 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~ 75 (256)
+|++++|+|+.++.+.....+...+ .+.|+++|+||+||.+... .| .+..+..++.+||++|.|++++.+
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTEEEEECCTTTCTTHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCCceEEEeCCCCCCHHHHHH
Confidence 6899999999988775433332222 1579999999999854211 11 112245678899999999999888
Q ss_pred HHHHHH
Q 025200 76 LAKALA 81 (256)
Q Consensus 76 ~i~~l~ 81 (256)
.+.+..
T Consensus 159 ~l~~~~ 164 (172)
T 2gj8_A 159 HLKQSM 164 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 776544
No 285
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.08 E-value=2.7e-06 Score=68.15 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHH------------cCCeEEE
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QGTKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~------------~~~~vi~ 61 (256)
+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+....++..+++.. .+..++.
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 689999999997754321 1222222 35799999999999753223334443322 2345788
Q ss_pred ecCcCCcchhHHHHHHH
Q 025200 62 SNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~ 78 (256)
+||++|.|++++.+.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp CBTTTTBSHHHHHHHHH
T ss_pred eECCcCCCHHHHHHHHH
Confidence 99999999998877654
No 286
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.07 E-value=3.4e-06 Score=68.14 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCC---hHHHHHHHHHHH--------------HcC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMIS---MADRNAWATYFA--------------KQG 56 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~---~~~~~~w~~~~~--------------~~~ 56 (256)
+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+ .++..++..... ..+
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCce
Confidence 689999999987743221 1223332 3579999999999974 333333332111 022
Q ss_pred CeEEEecCcCCcchhHHHHHHH
Q 025200 57 TKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 57 ~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
..++.+||++|.|++++.+.+.
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999998877654
No 287
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.07 E-value=2.9e-06 Score=65.91 Aligned_cols=80 Identities=16% Similarity=-0.012 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHH----Hhh-CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMD----QWL-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~----~~l-~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|+|+.++.+..+. .+. ... .+.|+++|+||+|+.+... .++..++.+..+..++.+||++|.|+++
T Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 5899999999876432211 111 111 2578999999999975321 2233334455577889999999999998
Q ss_pred HHHHHHHH
Q 025200 73 LSRLAKAL 80 (256)
Q Consensus 73 L~~~i~~l 80 (256)
+.+.+.+.
T Consensus 159 l~~~l~~~ 166 (170)
T 1z08_A 159 LFLDLCKR 166 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
No 288
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.07 E-value=2.8e-06 Score=68.84 Aligned_cols=79 Identities=18% Similarity=0.011 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh----CCCCEEEEEecCCCCChHHHH--------------HHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------------AWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~~--------------~w~~~~~~~~-~~v 59 (256)
+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+..... +..++.+..+ .++
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 6899999999877553322 122222 268999999999997654321 2222333344 358
Q ss_pred EEecCcCCcchhHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKA 79 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~ 79 (256)
+.+||++|.|++++.+.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 88999999999988876654
No 289
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.06 E-value=4.1e-06 Score=66.22 Aligned_cols=81 Identities=11% Similarity=-0.076 Sum_probs=55.7
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHh---h--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~---l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+..+.+..+.. +... . .+.|+++|+||+|+.+... ..+..++.+..+..++.+||++|.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 68999999998765433221 1111 1 2578999999999964322 2334445556677889999999999998
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 163 l~~~l~~~~ 171 (186)
T 2bme_A 163 AFVQCARKI 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765543
No 290
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.06 E-value=4.2e-06 Score=67.84 Aligned_cols=81 Identities=17% Similarity=0.059 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHh----hCCCCEEEEEecCCCCChHHHHHHH--------------HHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADRNAWA--------------TYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~~w~--------------~~~~~~~~-~v 59 (256)
+|++|+|+|+..+.+..+. .+... ..+.|+++|+||+|+.+.....++. ++.+..+. .+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 6899999999876432211 12222 2368999999999997654322221 11223343 68
Q ss_pred EEecCcCCcchhHHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l~ 81 (256)
+.+||++|.|++++.+.+.+..
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999888776543
No 291
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.04 E-value=7.4e-06 Score=65.40 Aligned_cols=81 Identities=12% Similarity=-0.037 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHH----Hhh---CCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMD----QWL---GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~----~~l---~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+..+. .+. +.. .+.|+++|+||+|+.+... .....++.+..+..++.+||++|.|++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 5899999999876443221 121 111 2579999999999976432 222223334456788899999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 160 ~l~~~l~~~~ 169 (199)
T 2gf0_A 160 ELFQELLTLE 169 (199)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9888776654
No 292
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.03 E-value=1.8e-06 Score=81.74 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC-CceeeeE--EEEe-------------------CCcEEEEecCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLK--WVRF-------------------GKDLEFLDSPGII 153 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~-g~T~~~~--~~~~-------------------~~~~~l~DtPGi~ 153 (256)
++.+|+++|++|+|||||+|+|.+... ....| |+|.+.. .... ...+.++||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 467899999999999999999997532 22333 5555421 2211 0148999999985
Q ss_pred C
Q 025200 154 P 154 (256)
Q Consensus 154 ~ 154 (256)
.
T Consensus 82 ~ 82 (594)
T 1g7s_A 82 A 82 (594)
T ss_dssp C
T ss_pred H
Confidence 4
No 293
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.03 E-value=2e-06 Score=75.97 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCC-----CCCC---HHHHHh---hCCCCEEEEEecCCCCChHH-HHHHHHHHHHcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPL-----STTH---PLMDQW---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-----~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~~-~~~w~~~~~~~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+..+. .... .++..+ +.++|+++|+||+|+.+..+ .+++.+.+.. ..+++.+||+++.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAVTRE 315 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSCCSS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECCCCc
Confidence 68999999996532 1111 112222 23689999999999987542 3444443321 1467889999999
Q ss_pred chhHHHHHHHHHHhh
Q 025200 69 GTMKLSRLAKALASD 83 (256)
Q Consensus 69 g~~~L~~~i~~l~~~ 83 (256)
|+++|.+.+.+...+
T Consensus 316 gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 316 GLRELLFEVANQLEN 330 (342)
T ss_dssp TTHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999888776543
No 294
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.03 E-value=6.9e-06 Score=67.14 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHh----hCCCCEEEEEecCCCCCh-----------------HHHHHHHHHHHHcCC
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISM-----------------ADRNAWATYFAKQGT 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~----l~~k~~ilVlNK~DL~~~-----------------~~~~~w~~~~~~~~~ 57 (256)
+|++|+|+|+.++.+..+ ..+... ..+.|+++|.||+||.+. ++..+|. ++.+.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~ 175 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA---KQLGA 175 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH---HHHTC
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH---HHcCC
Confidence 689999999998754332 112222 236799999999999642 2223333 34465
Q ss_pred -eEEEecCcCCcc-hhHHHHHHHHHH
Q 025200 58 -KVIFSNGQLGMG-TMKLSRLAKALA 81 (256)
Q Consensus 58 -~vi~~sa~~~~g-~~~L~~~i~~l~ 81 (256)
.++.+||++|.| ++++.+.+.+..
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHH
Confidence 788999999998 998887766544
No 295
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.02 E-value=1.1e-05 Score=63.05 Aligned_cols=80 Identities=6% Similarity=-0.096 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh-----CCCCEEEEEecCCCCChHH-HHHHHHHHH-HcCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l-----~~k~~ilVlNK~DL~~~~~-~~~w~~~~~-~~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+.+... .++..++.+ ..+..++.+||++|.
T Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 5899999999877543221 111121 3569999999999974321 222333333 335678899999999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 160 gi~~l~~~l~~~ 171 (177)
T 1wms_A 160 NVAAAFEEAVRR 171 (177)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999887766544
No 296
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.27 E-value=7.4e-07 Score=72.08 Aligned_cols=78 Identities=18% Similarity=0.027 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhhC----CCCEEEEEecCCCCChHHH--------------HHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR--------------NAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL~~~~~~--------------~~w~~~~~~~~~-~v 59 (256)
+|++++|+|+.++.+..+. .+...+. +.|+++|+||+|+.+.... .+..++.+..+. .+
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 5899999999887655432 2323332 5799999999999764311 122222233343 67
Q ss_pred EEecCcCCcchhHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~ 78 (256)
+.+||++|.|++++.+.+.
T Consensus 182 ~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAI 200 (204)
Confidence 8899999999988876654
No 297
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.01 E-value=5.3e-06 Score=66.75 Aligned_cols=80 Identities=14% Similarity=-0.014 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHhh-----CCCCEEEEEecCCCCChH------H--HHHHHHHHHHcCCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMA------D--RNAWATYFAKQGTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~l-----~~k~~ilVlNK~DL~~~~------~--~~~w~~~~~~~~~~vi~~sa~~ 66 (256)
+|++|+|+|+.++.+..+.. +...+ .+.|+++|+||+|+.+.. . .+.-.++.+..+..++.+||++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 68999999998775543321 11112 257999999999996321 0 1111223334567888999999
Q ss_pred CcchhHHHHHHHHH
Q 025200 67 GMGTMKLSRLAKAL 80 (256)
Q Consensus 67 ~~g~~~L~~~i~~l 80 (256)
|.|++++.+.+.+.
T Consensus 181 g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 181 GSNIVEAVLHLARE 194 (199)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99998887766543
No 298
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.01 E-value=1.6e-05 Score=63.90 Aligned_cols=81 Identities=17% Similarity=0.009 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCCCCCCH--HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++|+|.|+.++.+..+. .+..+. .+.|+++|.||+||.+... .++..++.+..+..++.+||+++.|++
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence 5899999999876543221 122221 2579999999999975321 223333334456778899999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 177 ~lf~~l~~~i 186 (195)
T 3cbq_A 177 ELFEGAVRQI 186 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765443
No 299
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.00 E-value=6.6e-06 Score=65.49 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=49.6
Q ss_pred CcEEEEEEecCCCCCCCCH-----HHHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCC---c
Q 025200 1 MDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG---M 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~---~ 68 (256)
+|++|+|+|+.++.+..+. .+.+.. .+.|+++|+||+|+.+..+ .+...++.+..+..++.+||+++ .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 6899999999876443221 122222 2579999999999965422 12222333445678899999999 6
Q ss_pred chhHHHHHH
Q 025200 69 GTMKLSRLA 77 (256)
Q Consensus 69 g~~~L~~~i 77 (256)
|++++.+.+
T Consensus 174 ~i~~l~~~l 182 (189)
T 1z06_A 174 HVEAIFMTL 182 (189)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666555443
No 300
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=5.9e-06 Score=66.23 Aligned_cols=81 Identities=15% Similarity=-0.016 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhh--CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCc-ch
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM-GT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~-g~ 70 (256)
+|++++|+|+.++.+..+.. +.... .+.|+++|+||+|+.+... .++..++.++.+..++.+||+++. |+
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 58999999998765432211 11211 2679999999999975321 122223334446788899999999 99
Q ss_pred hHHHHHHHHHH
Q 025200 71 MKLSRLAKALA 81 (256)
Q Consensus 71 ~~L~~~i~~l~ 81 (256)
+++.+.+.+..
T Consensus 179 ~~l~~~l~~~i 189 (196)
T 2atv_A 179 TEIFYELCREV 189 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.99 E-value=3.8e-06 Score=65.06 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCCCCCCCH-H-HHHhh----CCCCEEEEEecCCCCCh---HH-H-HHHHHHHHHcCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISM---AD-R-NAWATYFAKQGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~~---~~-~-~~w~~~~~~~~~~vi~~sa~~~~g 69 (256)
+|++++|+|+.++.+..+. . +..+. .+.|+++|+||+|+.+. .. . +...++.+..+..++.+||++|.|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 5899999999877443221 1 11111 25789999999999754 11 1 222223344567889999999999
Q ss_pred hhHHHHHHHH
Q 025200 70 TMKLSRLAKA 79 (256)
Q Consensus 70 ~~~L~~~i~~ 79 (256)
++++.+.+.+
T Consensus 156 i~~l~~~l~~ 165 (170)
T 1ek0_A 156 VNDVFLGIGE 165 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9888776643
No 302
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.99 E-value=8.2e-06 Score=74.27 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=49.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHH---hhCCCCEEEEEecCCCCC--hHH----HHHHHHHHHHcC-----CeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMIS--MAD----RNAWATYFAKQG-----TKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~---~l~~k~~ilVlNK~DL~~--~~~----~~~w~~~~~~~~-----~~vi~~sa~~ 66 (256)
+|++|+|+||+.+......+... .++.+|+|+|+||+|+.+ ++. .+++.+++++.+ .+++.+||++
T Consensus 128 aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~ 207 (434)
T 1zun_B 128 CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALK 207 (434)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTT
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccC
Confidence 69999999999876432222212 223346899999999986 222 234555555555 4678899999
Q ss_pred CcchhH
Q 025200 67 GMGTMK 72 (256)
Q Consensus 67 ~~g~~~ 72 (256)
|.|+++
T Consensus 208 g~gi~~ 213 (434)
T 1zun_B 208 GDNVVN 213 (434)
T ss_dssp CTTTSS
T ss_pred CCCccc
Confidence 999876
No 303
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=5.9e-06 Score=67.04 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .++..++.+..+..++.+||++|.|+++
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 6899999999876543221 111111 2568999999999974321 1222233344567788999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 179 l~~~l~~~i 187 (201)
T 2ew1_A 179 LFLDLACRL 187 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765544
No 304
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.2e-06 Score=69.45 Aligned_cols=81 Identities=12% Similarity=-0.082 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... ..+..++.+..+..++.+||+++.|+++
T Consensus 86 ~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 86 AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5899999999877543221 111111 2578999999999975321 1233334455677888999999999999
Q ss_pred HHHHHHHHH
Q 025200 73 LSRLAKALA 81 (256)
Q Consensus 73 L~~~i~~l~ 81 (256)
+.+.+.+..
T Consensus 166 l~~~l~~~i 174 (223)
T 3cpj_B 166 AFEELINTI 174 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766544
No 305
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.98 E-value=6.5e-06 Score=66.32 Aligned_cols=83 Identities=11% Similarity=-0.046 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCCCCCCH-HH-HHhhC-----CCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LM-DQWLG-----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l-~~~l~-----~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|++++|+|+.++.+.... .+ ..+.. +.|+++|+||+|+.+... ..+..++.+..+..++.+||++|.|++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 5899999999876443211 11 11111 469999999999975432 122223334456788899999999999
Q ss_pred HHHHHHHHHHhh
Q 025200 72 KLSRLAKALASD 83 (256)
Q Consensus 72 ~L~~~i~~l~~~ 83 (256)
++.+.+.+....
T Consensus 176 ~l~~~l~~~i~~ 187 (201)
T 3oes_A 176 GIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988777655433
No 306
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.97 E-value=6.4e-06 Score=72.29 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC-----CCCEEEEEecCCCCChHHHHHHHHHHHHc-----CCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w~~~~~~~-----~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+... ..+..++. +.|+++|+||+|+.+.....++.+.+... +..++.+||++|.
T Consensus 233 ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 589999999987654322 22333332 57899999999998765445555544322 2357889999999
Q ss_pred chhHHHHHHHHHH
Q 025200 69 GTMKLSRLAKALA 81 (256)
Q Consensus 69 g~~~L~~~i~~l~ 81 (256)
|++++.+.+.+..
T Consensus 313 gi~el~~~l~~~l 325 (329)
T 3o47_A 313 GLYEGLDWLSNQL 325 (329)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888776543
No 307
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.97 E-value=2e-06 Score=79.16 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=32.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc------------------------------ccCCCCCceeeeEE--EEe-CC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKW--VRF-GK 142 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~--~~~-~~ 142 (256)
..++|+++|.+|+|||||+|+|...... ......|+|.+... +.. +.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3679999999999999999999742110 00123577776642 222 34
Q ss_pred cEEEEecCCCCC
Q 025200 143 DLEFLDSPGIIP 154 (256)
Q Consensus 143 ~~~l~DtPGi~~ 154 (256)
.+.++||||...
T Consensus 122 ~~~iiDtPGh~~ 133 (467)
T 1r5b_A 122 RFSLLDAPGHKG 133 (467)
T ss_dssp EEEECCCCC---
T ss_pred EEEEEECCCcHH
Confidence 589999999753
No 308
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.96 E-value=8.5e-07 Score=75.19 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH----HHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++|+|+|+..+ .++..+...+. +.|+++|+||+|+.+... .+.+. +..+.+++.+||++|.|++++.
T Consensus 84 ~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~---~~lg~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 84 YDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE---SLLGCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH---HHHCSCEEECBGGGTBSHHHHH
T ss_pred CCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH---HHcCCCEEEEECCCCCCHHHHH
Confidence 6999999999874 22233333443 689999999999875532 22332 3347789999999999999888
Q ss_pred HHHHH
Q 025200 75 RLAKA 79 (256)
Q Consensus 75 ~~i~~ 79 (256)
+.+.+
T Consensus 159 ~~i~~ 163 (256)
T 3iby_A 159 QSLLH 163 (256)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77654
No 309
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.95 E-value=4.7e-06 Score=80.22 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=34.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCc-----c------cCC------CCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~-----~------~~~------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
..+|+++|.+|+|||||+|+|...... . +.+ ..|+|.......+ +..+.++||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 568999999999999999999832100 1 111 3466655433222 34689999999864
No 310
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.94 E-value=1.7e-05 Score=73.08 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=44.7
Q ss_pred CcEEEEEEecCCCCCC----CCHHHHH------hhCCCCEEEEEecCCCCC--hHHHH----HHHHHHHHcC-----CeE
Q 025200 1 MDVVIEVRDARIPLST----THPLMDQ------WLGNRKRILVLNREDMIS--MADRN----AWATYFAKQG-----TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~----~~~~l~~------~l~~k~~ilVlNK~DL~~--~~~~~----~w~~~~~~~~-----~~v 59 (256)
+|++|+|+||+.+.+. ..+...+ .++.+|+|+|+||+|+.+ ....+ +..+++.+.+ ..+
T Consensus 135 aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 214 (483)
T 3p26_A 135 ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 214 (483)
T ss_dssp CSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred CCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceE
Confidence 6999999999987432 1222211 123467999999999986 22222 2233333333 467
Q ss_pred EEecCcCCcchhH
Q 025200 60 IFSNGQLGMGTMK 72 (256)
Q Consensus 60 i~~sa~~~~g~~~ 72 (256)
+++||++|.|+++
T Consensus 215 i~iSA~~g~gi~e 227 (483)
T 3p26_A 215 VPISGFSGEGVYK 227 (483)
T ss_dssp EECCSSSCTTSSS
T ss_pred EEEeeecCCCccc
Confidence 8899999999874
No 311
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.92 E-value=6.8e-06 Score=75.89 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhh-----CCCCEEEEEecCCCCChHHHHHHHHHHHH-----cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-----~~~~vi~~sa~~~~ 68 (256)
+|++|+|+|+.++.+..+ ..+..++ .++|+|+|+||+||.+.....+..+.+.. .+..++++||++|.
T Consensus 390 ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 699999999987643322 1233332 26799999999999764333333333221 12358899999999
Q ss_pred chhHHHHHHHHHHhh
Q 025200 69 GTMKLSRLAKALASD 83 (256)
Q Consensus 69 g~~~L~~~i~~l~~~ 83 (256)
|++++.+.+.+....
T Consensus 470 gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 470 GLYEGLTWLTSNYKS 484 (497)
T ss_dssp THHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999998887765543
No 312
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.92 E-value=2e-05 Score=76.07 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=39.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc-----c------cCC------CCCceeeeEEEEe---C-------CcEEEEe
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---G-------KDLEFLD 148 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~-----~------~~~------~~g~T~~~~~~~~---~-------~~~~l~D 148 (256)
+..+|+++|.+|+|||||+++|...... . +.. ..|+|.......+ + ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3568999999999999999999743110 0 111 3466655432222 2 4689999
Q ss_pred cCCCCC
Q 025200 149 SPGIIP 154 (256)
Q Consensus 149 tPGi~~ 154 (256)
|||...
T Consensus 89 TPG~~d 94 (704)
T 2rdo_7 89 TPGHVD 94 (704)
T ss_pred CCCccc
Confidence 999864
No 313
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.91 E-value=6.8e-06 Score=70.03 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=47.2
Q ss_pred CcEEEEEEec-CCCCCCCCHHHHHhhC-CCCEEEEEecCCCCChHHHHH----HHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDa-r~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~----w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++++|+ +.++...+..+.+.+. ++|+|+|+||+|+.++++... ..+.+...+..++.+|++++.|.+++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 4677888755 4455555555555555 689999999999998766543 334455567777778999999988887
Q ss_pred HHHHHH
Q 025200 75 RLAKAL 80 (256)
Q Consensus 75 ~~i~~l 80 (256)
+.+.+.
T Consensus 196 ~~l~~~ 201 (274)
T 3t5d_A 196 KKIKDR 201 (274)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 766543
No 314
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.91 E-value=7.7e-06 Score=69.84 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=34.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcccC-------CCCCceee------eEEEEeCCcEEEEecCCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV------LKWVRFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~~~-------~~~g~T~~------~~~~~~~~~~~l~DtPGi~~~ 155 (256)
++++++|.+|+|||||+|+|.|......+ +.+.++.. .|...+...+.++|+||+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 67999999999999999999985432222 12222211 122223346899999999653
No 315
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.91 E-value=2.2e-06 Score=72.71 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHh-hC-CCCEEEEEecCCCCChHH----HHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQW-LG-NRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~-l~-~k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|+++.|+|+..+.. +..+... .. +.|+++|+||+|+..... .+++. +..|.+++++||++|.|++++.
T Consensus 84 ~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~---~~lg~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 84 ADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ---KHLGIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp CSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH---HHHCSCEEECCTTTCTTHHHHH
T ss_pred CCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH---HHcCCCEEEEEeeCCcCHHHHH
Confidence 589999999987532 2222222 22 689999999999865432 23333 3447789999999999999998
Q ss_pred HHHHHHH
Q 025200 75 RLAKALA 81 (256)
Q Consensus 75 ~~i~~l~ 81 (256)
+.+.+..
T Consensus 159 ~~i~~~~ 165 (258)
T 3a1s_A 159 EKIVEYA 165 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8776654
No 316
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.91 E-value=7.1e-06 Score=71.13 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=30.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccCCCC------CceeeeE--EEE-----eCCcEEEEecCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVR-----FGKDLEFLDSPGII 153 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~~~~------g~T~~~~--~~~-----~~~~~~l~DtPGi~ 153 (256)
.++|+++|.+|||||||+|+|.+......+..+ ..|.... .+. ....+.++||||+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 578999999999999999999886333322221 0121111 111 12357899999994
No 317
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.90 E-value=2.9e-05 Score=73.40 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH-----------------H--------HHHHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA-----------------D--------RNAWATYFA 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~-----------------~--------~~~w~~~~~ 53 (256)
+|++|+|+|+.++......+...++ .+.|+++|+||+|+.+.. . +.+..+.+.
T Consensus 94 aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~ 173 (594)
T 1g7s_A 94 ADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH 173 (594)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999986543333333333 267999999999997421 0 112233333
Q ss_pred HcC---------------CeEEEecCcCCcchhHHHHHHHHHHh
Q 025200 54 KQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 82 (256)
Q Consensus 54 ~~~---------------~~vi~~sa~~~~g~~~L~~~i~~l~~ 82 (256)
+.+ .+++++||++|.|+++|.+.+..+.+
T Consensus 174 e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 322 26888999999999999988877654
No 318
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.89 E-value=1.1e-05 Score=69.85 Aligned_cols=80 Identities=19% Similarity=0.054 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCCCCH------HHHHhhCCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcCC-eE
Q 025200 1 MDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQGT-KV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~~-~v 59 (256)
+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+... ..+..++.+..+. .+
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 6899999999876543221 1112223689999999999965321 1222333344454 78
Q ss_pred EEecCcCCcchhHHHHHHHHH
Q 025200 60 IFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 60 i~~sa~~~~g~~~L~~~i~~l 80 (256)
+.+||++|.|++++.+.+.+.
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHHHH
Confidence 899999999999888776543
No 319
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.88 E-value=1.5e-05 Score=72.15 Aligned_cols=83 Identities=27% Similarity=0.332 Sum_probs=59.8
Q ss_pred CcEEEEEEecC-CCCCCCC---HHHHHh---hCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar-~p~~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|.+++|+|+. .|+.... .++..+ +..+|.++|+||+|+...+....+.+.+++.+..++++||+++.|+++|
T Consensus 236 a~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 236 TRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 58899999995 3322111 112221 2368999999999998775556666777666778999999999999999
Q ss_pred HHHHHHHHhh
Q 025200 74 SRLAKALASD 83 (256)
Q Consensus 74 ~~~i~~l~~~ 83 (256)
.+.+.+....
T Consensus 316 ~~~i~~~l~~ 325 (416)
T 1udx_A 316 KEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888776543
No 320
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=7.7e-06 Score=74.12 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=34.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCcccCC------CCCceeeeEEEE-------eCCcEEEEecCCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------RPGVTRVLKWVR-------FGKDLEFLDSPGIIPM 155 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~~~~~------~~g~T~~~~~~~-------~~~~~~l~DtPGi~~~ 155 (256)
-.++|+++|.+|||||||+|.|.|......+. .+. |.....+. ....+.++||||+...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 35789999999999999999999865422220 111 22221111 1225789999999653
No 321
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.87 E-value=4.2e-05 Score=69.73 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCCCC-------CCHHHHHhh--CCCC-EEEEEecCCCCCh----HH----HHHHHHHHHHcC------
Q 025200 1 MDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDMISM----AD----RNAWATYFAKQG------ 56 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-------~~~~l~~~l--~~k~-~ilVlNK~DL~~~----~~----~~~w~~~~~~~~------ 56 (256)
+|++|+|+||+.+... ...+....+ .+.| +|+|+||+|+.+. +. .++..+++++.+
T Consensus 119 aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 198 (439)
T 3j2k_7 119 ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKD 198 (439)
T ss_pred CCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 6999999999987541 111111111 2456 8999999999642 11 123333444433
Q ss_pred CeEEEecCcCCcchhHHHH
Q 025200 57 TKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 57 ~~vi~~sa~~~~g~~~L~~ 75 (256)
.+++++||++|.|+.++.+
T Consensus 199 ~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 199 IHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eeEEEeeccCCcccccccc
Confidence 3588999999999987544
No 322
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.87 E-value=3.8e-05 Score=69.44 Aligned_cols=59 Identities=25% Similarity=0.203 Sum_probs=36.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcccC----CCCCceeeeEEEEe--CCcEEEEecCCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA----PRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 155 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~~~----~~~g~T~~~~~~~~--~~~~~l~DtPGi~~~ 155 (256)
...++++|.+|+|||||+|.|.|......+ ..+.+|+....... ...+.+.|+||+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 457999999999999999999984322111 11223332111121 246899999999654
No 323
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.87 E-value=7.9e-06 Score=82.01 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=36.8
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcCCC---------------cccCCCCCceeeeEEEEe---CCcEEEEecCCCC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKRRM---------------CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 153 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 153 (256)
...++|+++|.+|+|||||+|+|.+... .......|+|.+...+.. ...+.++||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 3568999999999999999999986310 011235688876543333 3568999999974
No 324
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.86 E-value=2.6e-05 Score=72.77 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=32.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 41 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 41 (256)
+|.+|+|+|+..+.......+...+. +.|+++|+||+|+..
T Consensus 106 aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 106 VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 69999999999887655544444433 689999999999964
No 325
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.86 E-value=1.8e-05 Score=71.67 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=38.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCcc---cCCCCCceeeeEEEEe-C----CcEEEEecCCCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRMCP---AAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 154 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~~~---~~~~~g~T~~~~~~~~-~----~~~~l~DtPGi~~ 154 (256)
++++++|.+|+|||||+|.|.|..... ....|+.++....+-. . ..+.++||||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 459999999999999999999874321 1224566654322111 1 2578999999975
No 326
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.85 E-value=1.1e-06 Score=75.26 Aligned_cols=75 Identities=24% Similarity=0.174 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHH----HHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++|+|+|+..+. ++..+...+. +.|+++|+||+|+.+... .+.+. +..+.+++.+||++|.|+++|.
T Consensus 86 ~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~---~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 86 ADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS---ARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp CSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH---HHHTSCEEECCCGGGHHHHHHH
T ss_pred CCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH---HhcCCCEEEEEcCCCCCHHHHH
Confidence 69999999998632 2222222222 689999999999875432 23333 2346789999999999999888
Q ss_pred HHHHHH
Q 025200 75 RLAKAL 80 (256)
Q Consensus 75 ~~i~~l 80 (256)
+.+.+.
T Consensus 161 ~~i~~~ 166 (274)
T 3i8s_A 161 LAIDRY 166 (274)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 766543
No 327
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.85 E-value=3.5e-06 Score=76.50 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHH-HcCCeEEEecCcCCcchhHHHHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~-~~~~~vi~~sa~~~~g~~~L~~~i 77 (256)
+|++|+|+|+ ........+...+. +.|+++|+||+|+.+.... +..+.+. ..+.+++.+||++|.|++++.+.+
T Consensus 114 aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 114 ADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp CSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred CCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 6899999999 22222233333333 6899999999999866433 2222232 335678899999999999999888
Q ss_pred HHHHh
Q 025200 78 KALAS 82 (256)
Q Consensus 78 ~~l~~ 82 (256)
.+...
T Consensus 191 ~~~l~ 195 (423)
T 3qq5_A 191 SEILP 195 (423)
T ss_dssp HHHSC
T ss_pred HHhhh
Confidence 77653
No 328
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.84 E-value=4.5e-05 Score=60.22 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCCC-----------CCCHHHHHhh--CCCCEEEEEecCCCCChH--HHHHHHHHHHHc----CCeEEE
Q 025200 1 MDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ----GTKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~-----------~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~----~~~vi~ 61 (256)
+++++.|.|+..... ..+..+...+ .+.|+++|+||+|+.+.. ..++|.+.+... ...++.
T Consensus 83 ~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2cxx_A 83 IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIP 162 (190)
T ss_dssp CCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEE
T ss_pred CCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEE
Confidence 468899998753211 0011122222 268999999999998753 334444433211 014688
Q ss_pred ecCcCCcchhHHHHHHHHHHhh
Q 025200 62 SNGQLGMGTMKLSRLAKALASD 83 (256)
Q Consensus 62 ~sa~~~~g~~~L~~~i~~l~~~ 83 (256)
+||++|.|++++.+.+.+...+
T Consensus 163 ~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 163 ISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhcch
Confidence 9999999999988877665433
No 329
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.83 E-value=1.1e-05 Score=64.25 Aligned_cols=80 Identities=10% Similarity=-0.053 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCCCCCCCHH-----HHHhh----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecC-cCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG-QLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-----l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa-~~~~ 68 (256)
+|++++|.|+.++.+..+.. +.... .+.|+++|+||+|+.+... .++..++.++.+..++.+|| +++.
T Consensus 92 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 58999999998764432211 11111 3679999999999964321 12233334445678889999 8999
Q ss_pred chhHHHHHHHHH
Q 025200 69 GTMKLSRLAKAL 80 (256)
Q Consensus 69 g~~~L~~~i~~l 80 (256)
|++++.+.+.+.
T Consensus 172 gv~~lf~~l~~~ 183 (187)
T 3c5c_A 172 HVQHVFHEAVRE 183 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 998887766543
No 330
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.82 E-value=1.2e-05 Score=65.19 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCCCCCCC---HHHHHhh-------CCCCEEEEEecCCCCChHHHHHHHHHH----H-------------
Q 025200 1 MDVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYF----A------------- 53 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~---~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~w~~~~----~------------- 53 (256)
+|++|+|+|+..+..+.. ..+...+ .+.|+++|+||+||.+........+.+ .
T Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 589999999976321111 1122211 147999999999998653332222222 1
Q ss_pred ------H--------------c--CCeEEEecCcCC------cchhHHHHHHHH
Q 025200 54 ------K--------------Q--GTKVIFSNGQLG------MGTMKLSRLAKA 79 (256)
Q Consensus 54 ------~--------------~--~~~vi~~sa~~~------~g~~~L~~~i~~ 79 (256)
+ . +..++.+||++| .|++++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 0 0 234677999999 999988877654
No 331
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.81 E-value=2.3e-06 Score=69.95 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
...|+++|.+|||||||+|+|.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 332
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.81 E-value=3.4e-05 Score=61.80 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh-------CCCCEEEEEecCCCCChHHH--------HHHHHHHH-----HcCCeEE
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR--------NAWATYFA-----KQGTKVI 60 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL~~~~~~--------~~w~~~~~-----~~~~~vi 60 (256)
+|++|+|+|+.++.......+..++ .+.|+++|.||+||.+.+.. ....+.+. ..+..++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 6899999999986211112222222 26799999999999874321 11122222 2345678
Q ss_pred EecCcCCcchhHHHHHHH
Q 025200 61 FSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 61 ~~sa~~~~g~~~L~~~i~ 78 (256)
.+||++ .|++++.+.+.
T Consensus 176 e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp EECTTS-THHHHHHHHHH
T ss_pred EEEech-hhHHHHHHHHH
Confidence 899999 99888776554
No 333
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.81 E-value=5.2e-05 Score=67.03 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHH----HHHHHHHH-------cCCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAK-------QGTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~----~w~~~~~~-------~~~~vi~~sa~~~~g 69 (256)
+|++++|+|+..+... ..+...+.+.|.++|+||+|+.+..... .+...++. ...+++++|++++.|
T Consensus 188 ~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~G 265 (349)
T 2www_A 188 VDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEG 265 (349)
T ss_dssp CSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTT
T ss_pred CCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCC
Confidence 6999999999865321 1122123357889999999997654322 22222211 135688999999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
+++|.+.+.++.
T Consensus 266 i~~L~~~I~~~~ 277 (349)
T 2www_A 266 ISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 334
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.80 E-value=1.5e-05 Score=74.46 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++|+|+|+..+ .....+...+ .+.|+++|+||+|+.+... .+...+.+...+.+++.+||++|.|+++|.
T Consensus 122 ~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 122 SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHH
T ss_pred CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHH
Confidence 5899999999764 1122222222 3589999999999976432 344555556667779999999999999998
Q ss_pred HHHHHHHhh
Q 025200 75 RLAKALASD 83 (256)
Q Consensus 75 ~~i~~l~~~ 83 (256)
+.+.+....
T Consensus 200 ~~l~~~~~~ 208 (535)
T 3dpu_A 200 KSLKSAVLH 208 (535)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 887765543
No 335
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.77 E-value=1.6e-05 Score=71.61 Aligned_cols=69 Identities=16% Similarity=0.018 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCC-EEEEEecCCCCC-hHHH----HHHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~~~~----~~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++|+|+||+.+......++...+ .+.| +++|+||+|+.+ ++.. ++..+++++.+ .+++++||++|
T Consensus 99 aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g 178 (405)
T 2c78_A 99 MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 178 (405)
T ss_dssp CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHh
Confidence 6899999999987654333332322 2567 789999999984 3322 23334444444 46889999988
Q ss_pred cc
Q 025200 68 MG 69 (256)
Q Consensus 68 ~g 69 (256)
.|
T Consensus 179 ~~ 180 (405)
T 2c78_A 179 LE 180 (405)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 336
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.76 E-value=1.9e-05 Score=73.16 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHh------cCCCcccC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL------KRRMCPAA 126 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~------~~~~~~~~ 126 (256)
++..|+++|.|||||||++|.|. |.+++.++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 46689999999999999999999 66654443
No 337
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.75 E-value=3.7e-06 Score=71.53 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CC-CCEEEEEecCCCCChHH----HHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GN-RKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~-k~~ilVlNK~DL~~~~~----~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|++++|+|+..+. ++..+...+ .+ .|+++|+||+|+.+... ...+. +..+.+++++|+++|.|++++
T Consensus 82 ~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~---~~lg~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 82 ADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMR---KELGVPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp CSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHH---HHHSSCEEECBGGGTBTHHHH
T ss_pred CcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHH---HHcCCcEEEEEeCCCCCHHHH
Confidence 68999999998752 122222212 24 89999999999875432 22232 234678999999999999999
Q ss_pred HHHHHHHH
Q 025200 74 SRLAKALA 81 (256)
Q Consensus 74 ~~~i~~l~ 81 (256)
.+.+....
T Consensus 157 ~~~i~~~~ 164 (271)
T 3k53_A 157 KRMIALMA 164 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 338
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.74 E-value=1.2e-05 Score=76.07 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc--------------cCCCCCceeeeEEEEe-----C---CcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~--------------~~~~~g~T~~~~~~~~-----~---~~~~l~DtPGi~~ 154 (256)
-.+|+++|.+|+|||||+++|....... .....|+|...+...+ + ..+.++||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3579999999999999999998632111 1123567765433322 1 2478999999864
No 339
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.73 E-value=5e-06 Score=64.93 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=49.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH----HHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~----~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|+++.|+|+..+.. ...+...+ .+.|+++|.||+|+.... +.++|.+ ..+.+++.+||++|.|++++.
T Consensus 82 ~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 82 PDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp CSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHHH
T ss_pred CCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---HhCCCEEEEEcCCCCCHHHHH
Confidence 589999999975311 11121222 268999999999985432 1233433 335678899999999999888
Q ss_pred HHHHH
Q 025200 75 RLAKA 79 (256)
Q Consensus 75 ~~i~~ 79 (256)
+.+.+
T Consensus 157 ~~l~~ 161 (165)
T 2wji_A 157 KAISI 161 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 340
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.73 E-value=5e-05 Score=66.84 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=50.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChHHHHHHHHHHH----Hc-------CCeEEEecCcCCcc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA----KQ-------GTKVIFSNGQLGMG 69 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~----~~-------~~~vi~~sa~~~~g 69 (256)
+|++++|+|+..+..... +.....+.|.++|+||+|+.+......+.+.++ .. ...++.+||++|.|
T Consensus 170 aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 170 VDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp CSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred CCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 699999999975422110 100111468899999999987654443333332 11 35678899999999
Q ss_pred hhHHHHHHHHHH
Q 025200 70 TMKLSRLAKALA 81 (256)
Q Consensus 70 ~~~L~~~i~~l~ 81 (256)
++.|.+.+.+..
T Consensus 248 i~~L~~~l~~~~ 259 (341)
T 2p67_A 248 IDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.73 E-value=2.3e-05 Score=62.07 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCCH--HH----HHhhCCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~-~~v 59 (256)
+|++|+|+|+.++.+..+. .+ .+...+.|+++|.||+|+.+... .++..++.++.+ ..+
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEE
Confidence 5899999999876543221 11 12223689999999999974210 111222223334 578
Q ss_pred EEecCc-CCcchhHHHHHHHHH
Q 025200 60 IFSNGQ-LGMGTMKLSRLAKAL 80 (256)
Q Consensus 60 i~~sa~-~~~g~~~L~~~i~~l 80 (256)
+.+||+ ++.|++++.+.+.+.
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHH
T ss_pred EEeeecCCCcCHHHHHHHHHHH
Confidence 889998 688998887766543
No 342
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.70 E-value=4.8e-05 Score=71.92 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHh--hCCCCEEEEEecCCCCChHHHHHHHHHHHH-cCC---eEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADRNAWATYFAK-QGT---KVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~--l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~-~~~---~vi~~sa~~~~g~~~L~ 74 (256)
+|.+|+|+||..+........... ..+.|+++|+||+|+.+.. ..+..+.+.+ .+. .++++||++|.|+++|.
T Consensus 97 aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Ll 175 (600)
T 2ywe_A 97 CEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEIL 175 (600)
T ss_dssp CSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHH
Confidence 699999999998865433222211 1368999999999997532 2222233332 232 47899999999999998
Q ss_pred HHHHHHHh
Q 025200 75 RLAKALAS 82 (256)
Q Consensus 75 ~~i~~l~~ 82 (256)
+.+.+..+
T Consensus 176 e~I~~~lp 183 (600)
T 2ywe_A 176 EAIVNRIP 183 (600)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcc
Confidence 88766554
No 343
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.70 E-value=3.4e-06 Score=67.90 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=45.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-C----CCCEEEEEecCCCCChHHH--HHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-G----NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-~----~k~~ilVlNK~DL~~~~~~--~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+.++.+..+. .+...+ . +.|+++|+||+|+.+.... ....++.+..+..++.+||+++.|+++
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 6899999999876442211 111112 1 5789999999999755321 112222334466788899999999988
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 186 l~~~l~~ 192 (199)
T 3l0i_B 186 SFMTMAA 192 (199)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8776543
No 344
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.70 E-value=2.6e-05 Score=63.34 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCCH--HH----HHhhCCCCEEEEEecCCCCChHH--------------HHHHHHHHHHcC-CeE
Q 025200 1 MDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQG-TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~~~~~~-~~v 59 (256)
+|++|+|+|+.++.+..+. .+ .+...+.|+++|.||+|+.+... .++..++.++.+ ..+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 6899999999876443221 12 22223679999999999974210 111222233334 578
Q ss_pred EEecCc-CCcchhHHHHHHHHH
Q 025200 60 IFSNGQ-LGMGTMKLSRLAKAL 80 (256)
Q Consensus 60 i~~sa~-~~~g~~~L~~~i~~l 80 (256)
+.+||+ ++.|++++.+.+.+.
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHH
Confidence 899998 688998887766543
No 345
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.69 E-value=3.9e-05 Score=62.76 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..+|+++|.+|||||||+|++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
No 346
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.68 E-value=2e-05 Score=77.49 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..+|+++|.+|+|||||+|+|...
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 347
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.67 E-value=5.4e-05 Score=62.36 Aligned_cols=79 Identities=15% Similarity=0.038 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|+++.|.|..++.+..+.. +...+ .+.|+++|.||+||.+... .++-.++-++.+..++.+||++|.|+++
T Consensus 86 a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 86 SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 58899999988776554321 11111 2468999999999965421 1222233344567788899999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 166 ~F~~i~~ 172 (216)
T 4dkx_A 166 LFRRVAA 172 (216)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776544
No 348
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.67 E-value=1.9e-05 Score=66.58 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.6
Q ss_pred CCceEEEEECCC---------CCcHHHHHHHHhcC
Q 025200 95 PRAVRAGIVGYP---------NVGKSSLINRLLKR 120 (256)
Q Consensus 95 ~~~~~i~~~G~p---------nvGKSslin~l~~~ 120 (256)
...++|+++|.| |||||||+|++.+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 356899999999 99999999999974
No 349
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.66 E-value=1.8e-05 Score=67.67 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH----HHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~----~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|+++.|+|+.... ++..+...+ .+.|+++|+||+|+.... ..+.|.+. .+.+++.+||++|.|++++.
T Consensus 81 ~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~---lg~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 81 ADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYH---LGVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp CSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHH---HTSCEEECBTTTTBSHHHHH
T ss_pred CCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHH---cCCCEEEEEccCCCCHHHHH
Confidence 58999999997642 122222222 268999999999986432 22344433 36788999999999999988
Q ss_pred HHHHHH
Q 025200 75 RLAKAL 80 (256)
Q Consensus 75 ~~i~~l 80 (256)
+.+.+.
T Consensus 156 ~~i~~~ 161 (272)
T 3b1v_A 156 KKAAHT 161 (272)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 876543
No 350
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.65 E-value=1.6e-05 Score=75.21 Aligned_cols=58 Identities=29% Similarity=0.435 Sum_probs=32.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCcc--------------cCCCCCceeeeEEEEe------C--CcEEEEecCCCCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 154 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~~~~--------------~~~~~g~T~~~~~~~~------~--~~~~l~DtPGi~~ 154 (256)
-.+|+++|++|+|||||+|+|....... .....|+|...+...+ + ..+.++||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3579999999999999999997531110 1112466654321111 1 2477999999875
No 351
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.64 E-value=3.3e-05 Score=74.77 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhhC--CCCEEEEEecCCCCChHHH-HHHHH--HHH-HcC-CeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWAT--YFA-KQG-TKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~~-~~w~~--~~~-~~~-~~vi~~sa~~~~g~~~ 72 (256)
+|+|++|+||+.+++..+. .+.+.+. ++|.|+|+||+|++++... ..+.+ .+. ..+ ..++++||++|.|+++
T Consensus 188 aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 188 NCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp TEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEE
T ss_pred CcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchh
Confidence 5899999999998877665 4666665 5899999999999976432 11111 000 012 3567899999999988
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
|.+.+.+
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
No 352
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.63 E-value=4.5e-05 Score=66.82 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=36.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCcccCCCCCceeeeEEEEe--CCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~l~DtPGi~~~ 155 (256)
||+++|..|||||||++.+.+..........+.|..+....+ .-.++++||||--..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 478999999999999999876532221112233333322222 246899999998654
No 353
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.62 E-value=1.1e-05 Score=67.61 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=27.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHh-----cCCCcccCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 130 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~-----~~~~~~~~~~~g 130 (256)
+...++++|.+||||||+++.|. +++.+.+..-|+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35678999999999999999998 777665554443
No 354
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.62 E-value=8.9e-05 Score=62.08 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=52.7
Q ss_pred cEEEEEEecCCCCCCCCHH-H----HHh--hCCCCEEEEEecCCCCChHHH---HHHHH-------H-------------
Q 025200 2 DVVIEVRDARIPLSTTHPL-M----DQW--LGNRKRILVLNREDMISMADR---NAWAT-------Y------------- 51 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~-l----~~~--l~~k~~ilVlNK~DL~~~~~~---~~w~~-------~------------- 51 (256)
|++++|+|+.......+.. . ... ..+.|.++|+||+|+.+..+. .+|.+ .
T Consensus 139 ~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 218 (262)
T 1yrb_A 139 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAY 218 (262)
T ss_dssp CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHH
T ss_pred ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHh
Confidence 6899999997543322111 0 011 126899999999999876533 22221 1
Q ss_pred -----HHHcC--CeEEEecCcCCcchhHHHHHHHHHHhh
Q 025200 52 -----FAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD 83 (256)
Q Consensus 52 -----~~~~~--~~vi~~sa~~~~g~~~L~~~i~~l~~~ 83 (256)
.++.+ .+++++||+++.|+++|.+.+.+..+.
T Consensus 219 ~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 219 KMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 12222 367899999999999999888776543
No 355
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=9.5e-05 Score=60.57 Aligned_cols=81 Identities=14% Similarity=-0.004 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHH-hh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQ-WL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~-~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.+|.|.|..++.+..+. .+.. +. .+.|+++|.||+||.+... ..+...+....+..++.+||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 5788999998765433221 1211 11 2579999999999964321 111112223345678889999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 192 elf~~l~~~i 201 (211)
T 2g3y_A 192 ELFEGIVRQV 201 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887765543
No 356
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.60 E-value=6.8e-05 Score=66.70 Aligned_cols=83 Identities=16% Similarity=-0.006 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCCCCCHH---HH---Hhh--CCCCEEEEEecCCCCChHHH--HHHH-HHHHHc---CCeEEEecCcC
Q 025200 1 MDVVIEVRDARIPLSTTHPL---MD---QWL--GNRKRILVLNREDMISMADR--NAWA-TYFAKQ---GTKVIFSNGQL 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~---l~---~~l--~~k~~ilVlNK~DL~~~~~~--~~w~-~~~~~~---~~~vi~~sa~~ 66 (256)
+|++++|+|+..|.+..... +. +.+ .++|+++|+||+|+.+.... .... .+.+.. ...++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 69999999998774111111 11 222 36899999999999864311 1111 111222 23578899999
Q ss_pred CcchhHHHHHHHHHHhh
Q 025200 67 GMGTMKLSRLAKALASD 83 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~~ 83 (256)
+.|+++|.+.+.+....
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999988876554
No 357
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.59 E-value=0.00017 Score=64.23 Aligned_cols=81 Identities=15% Similarity=0.021 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCE-EEEEe-cCCCCChHHHH----HHHHHHHHcC---CeEEE--ecCcC-
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISMADRN----AWATYFAKQG---TKVIF--SNGQL- 66 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~-ilVlN-K~DL~~~~~~~----~w~~~~~~~~---~~vi~--~sa~~- 66 (256)
+|++|+|+| +........+....+ .+.|. |+|+| |+|+ +.+..+ +..+++++.+ .++++ +||++
T Consensus 84 aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 84 SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK 161 (370)
T ss_dssp CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence 699999999 654332112222222 25677 99999 9999 765433 2333333322 57889 99999
Q ss_pred --CcchhHHHHHHHHHHhh
Q 025200 67 --GMGTMKLSRLAKALASD 83 (256)
Q Consensus 67 --~~g~~~L~~~i~~l~~~ 83 (256)
+.|+++|.+.+.+..+.
T Consensus 162 ~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhccc
Confidence 99999998888776554
No 358
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.58 E-value=6.3e-05 Score=67.57 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCC-EEEEEecCCCCC-hHHH----HHHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~~~~----~~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++|+|+||+.+......+....+ .+.| +++|+||+|+.+ ++.. ++..+++++.+ .+++++||++|
T Consensus 90 aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g 169 (397)
T 1d2e_A 90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169 (397)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhc
Confidence 6999999999987543322222222 2567 689999999985 3221 23344455444 47889999886
Q ss_pred cc----------hhHHHHHHHHHH
Q 025200 68 MG----------TMKLSRLAKALA 81 (256)
Q Consensus 68 ~g----------~~~L~~~i~~l~ 81 (256)
.+ +.+|.+.+.+..
T Consensus 170 ~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 170 LEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccccCCCccCCcHHHHHHHHHHhC
Confidence 53 556666665543
No 359
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=9.7e-06 Score=64.18 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH----HHHHHHHHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~----~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++|+|+.... ....+...+ .+.|+++|+||+|+.... ..++|.+ ..+..++.+||+++.|++++.
T Consensus 86 ~~~~i~v~d~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 86 PDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp CSEEEEEEEGGGHH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHHH
T ss_pred CCEEEEEecchhHH--HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhCCCeEEEEecCCCCHHHHH
Confidence 58999999987421 111122222 257999999999986432 2333333 336678999999999999988
Q ss_pred HHHHHHHhh
Q 025200 75 RLAKALASD 83 (256)
Q Consensus 75 ~~i~~l~~~ 83 (256)
+.+.+....
T Consensus 161 ~~i~~~~~~ 169 (188)
T 2wjg_A 161 KAISIAVKD 169 (188)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 877665543
No 360
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.56 E-value=5.2e-05 Score=71.95 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCC-------CCCCHHH---HHhhCCCCEEEEEecCCCCCh--HH----HHHHHHHHHHcC-----CeE
Q 025200 1 MDVVIEVRDARIPL-------STTHPLM---DQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-------~~~~~~l---~~~l~~k~~ilVlNK~DL~~~--~~----~~~w~~~~~~~~-----~~v 59 (256)
+|++|+|+||+.+. .....+. ...++.+++|+|+||+|+++. .. .++..+++.+.+ ..+
T Consensus 269 aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~ 348 (611)
T 3izq_1 269 ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 348 (611)
T ss_dssp CSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEE
T ss_pred cCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccE
Confidence 69999999998641 1111111 111233568999999999872 21 223333444333 478
Q ss_pred EEecCcCCcchhHH
Q 025200 60 IFSNGQLGMGTMKL 73 (256)
Q Consensus 60 i~~sa~~~~g~~~L 73 (256)
+++||++|.|+.++
T Consensus 349 i~vSA~tG~gI~el 362 (611)
T 3izq_1 349 VPISGFSGEGVYKI 362 (611)
T ss_dssp EECCTTTCTTTSSC
T ss_pred EeeecccCCCcccc
Confidence 89999999998754
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.56 E-value=5.9e-05 Score=61.43 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=51.5
Q ss_pred cEEEEEEecCCCCCCCCHHHHHh--hCCCCEEEEEecCCCCChH--HHHHHHHHHHHc--CCeEEEecCcCCcchhHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSR 75 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~--l~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~--~~~vi~~sa~~~~g~~~L~~ 75 (256)
+.++.|+|+..+.. . ...+ ..+.|.++|+||+|+.+.. ...+..+++++. +.+++.+|+++|.|++++.+
T Consensus 131 ~~~i~vvd~~~~~~---~-~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 131 NYRVVMVSVTEGDD---V-VEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp SEEEEEEEGGGCTT---H-HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred CcEEEEEeCCCcch---h-hhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence 56788999986532 1 1111 1257999999999996532 234444444443 35788999999999999988
Q ss_pred HHHHHH
Q 025200 76 LAKALA 81 (256)
Q Consensus 76 ~i~~l~ 81 (256)
.+.+..
T Consensus 207 ~l~~~~ 212 (221)
T 2wsm_A 207 FLRGIL 212 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 362
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.55 E-value=0.00021 Score=71.88 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCC-EEEEEecCCCCChHH-H----HHHHHHHHHcC-----CeEEEecCcCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMAD-R----NAWATYFAKQG-----TKVIFSNGQLG 67 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~-~----~~w~~~~~~~~-----~~vi~~sa~~~ 67 (256)
+|++|+|+||+++......+....+. +.| +|+|+||+|+.+.+. . ++..+++++.+ .+++++||++|
T Consensus 383 AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 383 MDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKA 462 (1289)
T ss_dssp CSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTT
T ss_pred CCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccC
Confidence 69999999999886654433333332 567 689999999985322 1 23344455444 46889999998
Q ss_pred --------cchhHHHHHHHHH
Q 025200 68 --------MGTMKLSRLAKAL 80 (256)
Q Consensus 68 --------~g~~~L~~~i~~l 80 (256)
.|+.+|.+.+.+.
T Consensus 463 ~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 463 LEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCccccccchhhHhHHhhh
Confidence 4567777766654
No 363
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.52 E-value=4.8e-05 Score=71.90 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCCC-------CCCCHHHHHhh--CCCC-EEEEEecCCCCC--hHHH----HHHHHHH-HHcCC-----e
Q 025200 1 MDVVIEVRDARIPL-------STTHPLMDQWL--GNRK-RILVLNREDMIS--MADR----NAWATYF-AKQGT-----K 58 (256)
Q Consensus 1 ~Dvvi~VvDar~p~-------~~~~~~l~~~l--~~k~-~ilVlNK~DL~~--~~~~----~~w~~~~-~~~~~-----~ 58 (256)
+|++|+|+||+.+. .....+...++ .+.| +|+|+||+|+++ ++.. .+..+++ +..+. +
T Consensus 279 aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ 358 (592)
T 3mca_A 279 ADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVH 358 (592)
T ss_dssp ---CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEE
T ss_pred CCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceE
Confidence 68999999999754 22222222222 2454 889999999986 3332 2333444 33343 5
Q ss_pred EEEecCcCCcchh
Q 025200 59 VIFSNGQLGMGTM 71 (256)
Q Consensus 59 vi~~sa~~~~g~~ 71 (256)
++++||++|.|+.
T Consensus 359 ii~iSA~~G~gI~ 371 (592)
T 3mca_A 359 FVPISAISGTNLI 371 (592)
T ss_dssp EEEECSSSCSSSC
T ss_pred EEEEecccCcccc
Confidence 8899999999987
No 364
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.51 E-value=6e-05 Score=59.73 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCCCCC-CH-H-HHHh---hCCCCEEEEEecCCCCChHHHH----HHHHHHH-HcCCe----EEEecCc
Q 025200 1 MDVVIEVRDARIPLSTT-HP-L-MDQW---LGNRKRILVLNREDMISMADRN----AWATYFA-KQGTK----VIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~-~~-~-l~~~---l~~k~~ilVlNK~DL~~~~~~~----~w~~~~~-~~~~~----vi~~sa~ 65 (256)
+|+++.|.|...+..+. +. . +..+ ..+.|+++|.||+|+.+..... ...+.+. +.+.. ++.+||+
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 47899999998764221 11 1 1111 1367999999999998765432 2223332 23433 7889999
Q ss_pred CCc-chhHHHHHHHHHH
Q 025200 66 LGM-GTMKLSRLAKALA 81 (256)
Q Consensus 66 ~~~-g~~~L~~~i~~l~ 81 (256)
++. ++++|.+.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 160 EESDALAKLRKTIINES 176 (184)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHH
Confidence 996 8888877765544
No 365
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.51 E-value=0.00011 Score=66.80 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCC-------CCCCCHHHHHh---hCCCCEEEEEecCCCCCh----HH----HHHHHHHHHHcC-----C
Q 025200 1 MDVVIEVRDARIP-------LSTTHPLMDQW---LGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----T 57 (256)
Q Consensus 1 ~Dvvi~VvDar~p-------~~~~~~~l~~~---l~~k~~ilVlNK~DL~~~----~~----~~~w~~~~~~~~-----~ 57 (256)
+|++|+|+||+.. ......+...+ ++.+++++|+||+|+.+. +. .++..++++..+ .
T Consensus 108 aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (435)
T 1jny_A 108 ADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 187 (435)
T ss_dssp CSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred cCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCc
Confidence 6999999999974 22111111111 223578999999999872 21 233444555544 4
Q ss_pred eEEEecCcCCcchhH
Q 025200 58 KVIFSNGQLGMGTMK 72 (256)
Q Consensus 58 ~vi~~sa~~~~g~~~ 72 (256)
.++++||++|.|+.+
T Consensus 188 ~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 188 RFVPVVAPSGDNITH 202 (435)
T ss_dssp EEEECBTTTTBTTTB
T ss_pred eEEEeecccCccccc
Confidence 688999999998863
No 366
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.49 E-value=9e-05 Score=71.00 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=38.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCCCc--c---------cCC------CCCceeeeEEEEe---CCcEEEEecCCCCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRRMC--P---------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 154 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~~~--~---------~~~------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 154 (256)
+..+|+++|.+|+|||||+++|.+.... . +.. ..|+|...+...+ ...+.++||||...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3568999999999999999999843211 0 011 1255554443332 34588999999864
No 367
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=0.00013 Score=64.73 Aligned_cols=80 Identities=8% Similarity=0.079 Sum_probs=43.7
Q ss_pred CcEEEEEEec-CCCCCCCCHHHHHhhC-CCCEEEEEecCCCCChHHHHHHH----HHHHHcCCeEEEecCcCCcchhHHH
Q 025200 1 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLS 74 (256)
Q Consensus 1 ~Dvvi~VvDa-r~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~w~----~~~~~~~~~vi~~sa~~~~g~~~L~ 74 (256)
+|++++++|+ +.++...+..+.+.+. +.|+|+|+||+|+.+..++..+. ++.+..+.+++.+|++++.+.+.+.
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~ 225 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFK 225 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CH
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHH
Confidence 4678888876 5555543334444444 57999999999999877654432 2333445677889999888743344
Q ss_pred HHHHHH
Q 025200 75 RLAKAL 80 (256)
Q Consensus 75 ~~i~~l 80 (256)
.++..+
T Consensus 226 ~l~~~i 231 (361)
T 2qag_A 226 EQTRLL 231 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 368
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.42 E-value=0.00018 Score=65.96 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCCC-------CCC-HHHHH-hhCCCC-EEEEEecCCCCC----hHH----HHHHHHHHHHc-C-----
Q 025200 1 MDVVIEVRDARIPLS-------TTH-PLMDQ-WLGNRK-RILVLNREDMIS----MAD----RNAWATYFAKQ-G----- 56 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~-------~~~-~~l~~-~l~~k~-~ilVlNK~DL~~----~~~----~~~w~~~~~~~-~----- 56 (256)
+|++|+|+||+.+.. ... ..+.. ...+.| +|+|+||+|+.+ ++. ..+..+++++. +
T Consensus 145 aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~ 224 (467)
T 1r5b_A 145 ADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 224 (467)
T ss_dssp CSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 699999999998641 111 11111 112556 899999999964 221 22344444444 3
Q ss_pred -CeEEEecCcCCcchhHH
Q 025200 57 -TKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 57 -~~vi~~sa~~~~g~~~L 73 (256)
..++.+||++|.|+.++
T Consensus 225 ~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 225 DVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HEEEEECBTTTTBTTSSC
T ss_pred CceEEecccccccccccc
Confidence 35788999999998653
No 369
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.41 E-value=0.00017 Score=62.38 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=44.9
Q ss_pred CcEEEEEEecCCCCCCCCHH-HHHh-------hCCCCEEEEEecCCCCChHHH--------HHHHHHHHHcC---CeEEE
Q 025200 1 MDVVIEVRDARIPLSTTHPL-MDQW-------LGNRKRILVLNREDMISMADR--------NAWATYFAKQG---TKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~-l~~~-------l~~k~~ilVlNK~DL~~~~~~--------~~w~~~~~~~~---~~vi~ 61 (256)
+|++|+|+|+.++.+..+.. +..+ ..+.|+++|+||+|+.+.+.. .+..++.+..| ..++.
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 68999999999876543321 1111 126899999999999884322 22222333444 57888
Q ss_pred ecCcCCcchh
Q 025200 62 SNGQLGMGTM 71 (256)
Q Consensus 62 ~sa~~~~g~~ 71 (256)
+||++ .+..
T Consensus 161 tSa~~-~~i~ 169 (307)
T 3r7w_A 161 TSIWD-ESLY 169 (307)
T ss_dssp CCTTS-SHHH
T ss_pred eeecC-ChHH
Confidence 99998 4443
No 370
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.40 E-value=3.8e-05 Score=65.67 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=51.4
Q ss_pred cEEEEEEecCCCCCCCCH-HHHHhhC--CCCEEEEEecCCCCChHH-HHHHHHH-HHHc--C-CeEEEecCcCCcchhHH
Q 025200 2 DVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQ--G-TKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~-~~~w~~~-~~~~--~-~~vi~~sa~~~~g~~~L 73 (256)
++|++|+|+..+++..+. .+.+.+. ++|.++|+||+|+.++.. ..++.+. +... + ..++.+||++|.|++++
T Consensus 164 ~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l 243 (299)
T 2aka_B 164 CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDI 243 (299)
T ss_dssp EEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCH
T ss_pred eEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccH
Confidence 356689999987665542 3444443 579999999999986543 2222211 0011 2 24667999999999988
Q ss_pred HHHHHH
Q 025200 74 SRLAKA 79 (256)
Q Consensus 74 ~~~i~~ 79 (256)
.+.+.+
T Consensus 244 ~~~l~~ 249 (299)
T 2aka_B 244 TAALAA 249 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887665
No 371
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.40 E-value=0.00019 Score=69.05 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCCCCCHHHH-HhhC--CCCEEEEEecCCCCChH--------HHHH----HH----HHHHHc------
Q 025200 1 MDVVIEVRDARIPLSTTHPLMD-QWLG--NRKRILVLNREDMISMA--------DRNA----WA----TYFAKQ------ 55 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~-~~l~--~k~~ilVlNK~DL~~~~--------~~~~----w~----~~~~~~------ 55 (256)
+|+||+|+|+..+.+..+..+. +.+. ++|+++|+||+|+.+.. ..+. .. ..+...
T Consensus 201 aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~ 280 (695)
T 2j69_A 201 CHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQ 280 (695)
T ss_dssp SSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSC
T ss_pred CCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 6999999999988765444332 3443 57899999999997543 1111 11 112111
Q ss_pred ---CCeEEEecCc--------------CCcchhHHHHHHHHHH
Q 025200 56 ---GTKVIFSNGQ--------------LGMGTMKLSRLAKALA 81 (256)
Q Consensus 56 ---~~~vi~~sa~--------------~~~g~~~L~~~i~~l~ 81 (256)
...++++||+ .+.|+++|.+.+.+..
T Consensus 281 ~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 281 NIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp BCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1358899999 8999998887776544
No 372
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.38 E-value=0.00038 Score=55.94 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChHHH----HHHHHHHHHcC--CeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~----~~w~~~~~~~~--~~vi~~sa~~~~g~~~ 72 (256)
+|.+++|.|+..+.+.....+..++ .+.|.++|.||+|+.+..+. ....+.+.+.+ ...+++|++++.|+++
T Consensus 109 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 109 LQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred ccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHH
Confidence 3678999999987654333444444 26789999999999876432 22333333332 3567899999999999
Q ss_pred HHHHHHHHHhh
Q 025200 73 LSRLAKALASD 83 (256)
Q Consensus 73 L~~~i~~l~~~ 83 (256)
+.+.+.++...
T Consensus 189 l~~~l~~~~~~ 199 (210)
T 1pui_A 189 LRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99888776543
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.36 E-value=0.0004 Score=55.48 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh------CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchh
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTM 71 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l------~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~ 71 (256)
+|.++.|.|..++.+..+. .+...+ .+.|+++|.||+||.+... ..+...+-...+..++.+||++|.|++
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~ 160 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVK 160 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHH
Confidence 5788999998766443221 121111 2579999999999964321 111112223345678889999999999
Q ss_pred HHHHHHHHHH
Q 025200 72 KLSRLAKALA 81 (256)
Q Consensus 72 ~L~~~i~~l~ 81 (256)
++.+.+.+..
T Consensus 161 ~lf~~l~~~~ 170 (192)
T 2cjw_A 161 ELFEGIVRQV 170 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887665433
No 374
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.35 E-value=1.7e-05 Score=73.97 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCChH--HHHHHHHHH----HHcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~~----~~~~--~~vi~~sa~~~~g~ 70 (256)
+|++|+|+|+.++......+....+ .+.|+++|+||+|+.+.. ........+ ...+ .+++++||++|.|+
T Consensus 76 aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 76 TDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp BSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 5899999999987665433333333 267999999999997432 111111111 1111 35778999999999
Q ss_pred hHHHHHHHHHHhhhhhhhhcc------------CCCCCceEEEEECCCCCcHHHHH
Q 025200 71 MKLSRLAKALASDVNVKRRSK------------GLLPRAVRAGIVGYPNVGKSSLI 114 (256)
Q Consensus 71 ~~L~~~i~~l~~~~~~~~~~~------------~~~~~~~~i~~~G~pnvGKSsli 114 (256)
++|.+.+..+.+......... ......+..+.|+.+++++++.+
T Consensus 156 ~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 156 MALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp HHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred hhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 999988877654321111000 00123566788888888887754
No 375
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.29 E-value=0.00051 Score=59.09 Aligned_cols=81 Identities=7% Similarity=0.043 Sum_probs=50.5
Q ss_pred CcEEEEEEec-CCCCCCCCH-HHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHHH----cCCeEEE---ecCcC---
Q 025200 1 MDVVIEVRDA-RIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK----QGTKVIF---SNGQL--- 66 (256)
Q Consensus 1 ~Dvvi~VvDa-r~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~~----~~~~vi~---~sa~~--- 66 (256)
+|++++|+|+ ..++...+. .+.+.+. ++|.++|+||+|+.++.. .+.++++. .+...+. +|+..
T Consensus 168 ~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~ 245 (315)
T 1jwy_B 168 QNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIA 245 (315)
T ss_dssp TTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSS
T ss_pred CCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhcc
Confidence 5899999997 555554443 5666664 689999999999986543 12223322 1123333 44444
Q ss_pred CcchhHHHHHHHHHHhh
Q 025200 67 GMGTMKLSRLAKALASD 83 (256)
Q Consensus 67 ~~g~~~L~~~i~~l~~~ 83 (256)
+.|+.++.+.+.++.+.
T Consensus 246 ~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 66777777776666543
No 376
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.26 E-value=0.00071 Score=61.62 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=39.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc-----------------CCCcccCCC-CCceeeeE-EE-----Ee--CC--cEEEEec
Q 025200 98 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV-----RF--GK--DLEFLDS 149 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~-----------------~~~~~~~~~-~g~T~~~~-~~-----~~--~~--~~~l~Dt 149 (256)
.-|+|+|.+++|||+|+|.|.+ .....+++. -.+|+.+. |. .. +. .+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4578999999999999997752 123334322 23566653 21 11 12 3899999
Q ss_pred CCCCCCCCC
Q 025200 150 PGIIPMRIS 158 (256)
Q Consensus 150 PGi~~~~~~ 158 (256)
.|+..+...
T Consensus 148 EG~~d~~~~ 156 (457)
T 4ido_A 148 QGTFDSQST 156 (457)
T ss_dssp CCBTCTTCC
T ss_pred cCCCCcccC
Confidence 999877554
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.25 E-value=0.0004 Score=57.47 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh----C---CCCEEEEEecCCCCChHHHHH--------HHHHHHHcCCeEEEecCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLNREDMISMADRNA--------WATYFAKQGTKVIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l----~---~k~~ilVlNK~DL~~~~~~~~--------w~~~~~~~~~~vi~~sa~ 65 (256)
+|++|+|+|+.. ++..+..+...+ + .+|+++|+||+|+.+...+.+ ..+..++.+..++++++.
T Consensus 113 ~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 113 PHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp CSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTT
T ss_pred CcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence 489999999874 333222222222 1 359999999999987654442 223344556667777765
Q ss_pred CC-----cchhHHHHHHHHHH
Q 025200 66 LG-----MGTMKLSRLAKALA 81 (256)
Q Consensus 66 ~~-----~g~~~L~~~i~~l~ 81 (256)
.+ .++.+|.+.+.++.
T Consensus 192 ~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 192 ATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHH
Confidence 43 35556665555544
No 378
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.25 E-value=0.00068 Score=63.45 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=62.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc---------------ccC------CCCCceeee---EEEEeCCcEEEEecCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVL---KWVRFGKDLEFLDSPGIIP 154 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~---------------~~~------~~~g~T~~~---~~~~~~~~~~l~DtPGi~~ 154 (256)
+|+++|+..+|||||..+|+-.... .+. ...|.|-.. ...+-+..+.||||||-..
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999621100 111 123544332 2222345689999999987
Q ss_pred CCCCcHHHHHHHHHhcc-c--cccccchhHHHHHHHHHHHhCCCcChhHHHhhhcCCCCCCchHHHHHHHHHH
Q 025200 155 MRISDQAAAIKLAICDD-I--GERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH 224 (256)
Q Consensus 155 ~~~~~~~~~~~l~~~~~-i--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~~~~ 224 (256)
.. .|..-.|.+++. + -+.+-..+.-...++..+.+. +.+.+...+|+|-...+....++.+..+
T Consensus 113 F~---~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 113 FS---EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREALHPLDVMADIEQH 179 (548)
T ss_dssp CS---HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred HH---HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchhcchhHhhhhhhhh
Confidence 53 222223333332 1 112222222233444544443 3344556778876566666666555443
No 379
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.24 E-value=0.00012 Score=67.00 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=44.8
Q ss_pred CcEEEEEEecCCCCCC-------CCHHHHHhh--CCCC-EEEEEecCCCCC--hHHH----HHHHHHHHHcC-----CeE
Q 025200 1 MDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDMIS--MADR----NAWATYFAKQG-----TKV 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~-------~~~~l~~~l--~~k~-~ilVlNK~DL~~--~~~~----~~w~~~~~~~~-----~~v 59 (256)
+|++|+|+||+.+... ...+....+ .+.| +|+|+||+|+.+ ++.. ++..++++..+ .++
T Consensus 109 aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 188 (458)
T 1f60_A 109 ADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 188 (458)
T ss_dssp CSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred CCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceE
Confidence 6999999999865311 111111111 2444 889999999983 3322 23334444444 468
Q ss_pred EEecCcCCcchhH
Q 025200 60 IFSNGQLGMGTMK 72 (256)
Q Consensus 60 i~~sa~~~~g~~~ 72 (256)
+++||++|.|+.+
T Consensus 189 i~vSA~~g~nv~~ 201 (458)
T 1f60_A 189 VPISGWNGDNMIE 201 (458)
T ss_dssp EECCTTTCBTTTB
T ss_pred EEeecccCcCccc
Confidence 8999999998754
No 380
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.23 E-value=0.00023 Score=63.98 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=36.0
Q ss_pred CCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 27 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 27 ~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
.+|.++|+||+|+...+.+.++.+++...+..++++||+.+.++.+|
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHH
Confidence 48999999999998555556666666555668899999988777654
No 381
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.20 E-value=7.7e-05 Score=69.05 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCCh--HHHHHHHH---HH-HHcC--CeEEEecCcCCcch
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWAT---YF-AKQG--TKVIFSNGQLGMGT 70 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~---~~-~~~~--~~vi~~sa~~~~g~ 70 (256)
+|++|+|+||.++......+....+ .+.|+++++||+|+.+. +.+..... .+ +..+ .+++++||++|.|+
T Consensus 75 aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 75 TDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp CSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred CCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 6899999999987665554443333 36899999999999642 11111100 00 0111 46889999999999
Q ss_pred hHHHHHHH
Q 025200 71 MKLSRLAK 78 (256)
Q Consensus 71 ~~L~~~i~ 78 (256)
++|.+.+.
T Consensus 155 ~eLle~I~ 162 (501)
T 1zo1_I 155 DELLDAIL 162 (501)
T ss_dssp TTHHHHTT
T ss_pred chhhhhhh
Confidence 99888764
No 382
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.19 E-value=0.00034 Score=60.78 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=58.0
Q ss_pred HHHhhCCCCEEEEEecCCCCChHHHHHHHHHHHHcCCeEEEecCcCCcchhHHHHHHHHHHhhhhhhhhccCCCCCceEE
Q 025200 21 MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 100 (256)
Q Consensus 21 l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~i 100 (256)
+++++....-.+|++|.|..+++.+ +.-++.+.+++.++..+......|...+............ ....-...-|
T Consensus 73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~-~~v~~~g~~v 147 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG-VLVDVYGVGV 147 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEES-EEEEETTEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeE-EEEEECCEEE
Confidence 4444544555788899999876533 3334457777777766666666665554432211000000 0000123468
Q ss_pred EEECCCCCcHHHHHHHHhcCC
Q 025200 101 GIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 101 ~~~G~pnvGKSslin~l~~~~ 121 (256)
+++|.+|+||||+.+.|.++.
T Consensus 148 l~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEESTTSSHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHhcC
Confidence 999999999999999999764
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.19 E-value=0.00067 Score=55.25 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=48.3
Q ss_pred cEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCChH--HHHHHHHHHHHc--CCeEEEecCcCCcchhHHHHHH
Q 025200 2 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLA 77 (256)
Q Consensus 2 Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~~~w~~~~~~~--~~~vi~~sa~~~~g~~~L~~~i 77 (256)
+.+++|+|+..+....... ...+ ++|.++|+||+|+.+.. ...+..+++++. +.+++.+||++|.|++++.+.+
T Consensus 141 ~~~~~v~~~~~~~~~~~~~-~~~~-~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 141 HKRIVVISTTEGDDTIEKH-PGIM-KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp SEEEEEEEGGGCTTTTTTC-HHHH-TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred CcEEEEEecCcchhhHhhh-hhHh-hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHH
Confidence 3456778864332211111 1122 57889999999996542 233333444432 4578899999999999988877
Q ss_pred HHHH
Q 025200 78 KALA 81 (256)
Q Consensus 78 ~~l~ 81 (256)
.+..
T Consensus 219 ~~~~ 222 (226)
T 2hf9_A 219 EKSV 222 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.16 E-value=0.00013 Score=66.34 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 385
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.13 E-value=0.00079 Score=59.09 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhCCCCEEEEEecCCCCCh-HHHHHHHHHHHH-----------cCCeEEEecCcCCc
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM-ADRNAWATYFAK-----------QGTKVIFSNGQLGM 68 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~-~~~~~w~~~~~~-----------~~~~vi~~sa~~~~ 68 (256)
+|++++|+|+..+... ..+...+.+.+.++|+||+|+.+. .....+.+.+.. ...+++++|+.++.
T Consensus 169 ~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 169 TDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp SSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred CCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 5899999998643110 001111113466888999998753 322222332221 13578899999999
Q ss_pred chhHHHHHHHHHHh
Q 025200 69 GTMKLSRLAKALAS 82 (256)
Q Consensus 69 g~~~L~~~i~~l~~ 82 (256)
|+++|.+.+.++..
T Consensus 247 gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 247 GLDSLWSRIEDHRS 260 (337)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988877643
No 386
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.10 E-value=0.00038 Score=58.26 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--------CCCEEEEEecCCCCChHH---H-----HHHHHHHHHcCCeEEEecC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD---R-----NAWATYFAKQGTKVIFSNG 64 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--------~k~~ilVlNK~DL~~~~~---~-----~~w~~~~~~~~~~vi~~sa 64 (256)
+|++|+|+|+.. ++..+..+.+++. +.|+|+|.||+||.+... + ....+..++.+..++++++
T Consensus 106 ~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~ 184 (247)
T 3lxw_A 106 PHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDN 184 (247)
T ss_dssp CSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCT
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeC
Confidence 589999999974 3332233333321 468999999999975321 1 1223344556666766665
Q ss_pred cC-----CcchhHHHHHHHHHHhh
Q 025200 65 QL-----GMGTMKLSRLAKALASD 83 (256)
Q Consensus 65 ~~-----~~g~~~L~~~i~~l~~~ 83 (256)
.. +.|+++|.+.+.++..+
T Consensus 185 ~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 185 RATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHH
Confidence 54 46778888877777654
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.97 E-value=0.00028 Score=59.17 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh----C---CCCEEEEEe-cCCCCChHHHHHHH---------HHHHHcCCeE----
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN-REDMISMADRNAWA---------TYFAKQGTKV---- 59 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l----~---~k~~ilVlN-K~DL~~~~~~~~w~---------~~~~~~~~~v---- 59 (256)
+|++|+|+|+.. +......+.+++ + .+|.++|+| |+|+.+.. ...|. +..+..+...
T Consensus 106 ~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 183 (260)
T 2xtp_A 106 PHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFN 183 (260)
T ss_dssp CSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred CcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEec
Confidence 589999999975 333222232322 2 468888888 99998542 22221 1223323211
Q ss_pred -EEecCcCCcchhHHHHHHHHHHhh
Q 025200 60 -IFSNGQLGMGTMKLSRLAKALASD 83 (256)
Q Consensus 60 -i~~sa~~~~g~~~L~~~i~~l~~~ 83 (256)
+.+||+.+.|++++.+.+..+...
T Consensus 184 ~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 184 NRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHh
Confidence 567899999999988887766543
No 388
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.91 E-value=0.0005 Score=55.82 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=36.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-cccCCCCCceeeeEEEEe-CCcEEEEecCCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 152 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 152 (256)
-.|+++|.+|+|||||+|.|.+... ......+.|||....... +.++.++|.+.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 3589999999999999999997643 244567778876532111 233444554443
No 389
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.79 E-value=0.002 Score=62.01 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=32.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCCh
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 42 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 42 (256)
+|.+|+|+|+..+.......+...+. +.|+++|+||+|+...
T Consensus 99 aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 99 LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 69999999999876654444433332 6899999999999753
No 390
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.78 E-value=0.0021 Score=61.80 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=31.0
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 41 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 41 (256)
+|.+|+|+|+..+.......+...+ .+.|.++|+||+|+..
T Consensus 101 aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 101 LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 6999999999987665443333333 2689999999999975
No 391
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.77 E-value=0.0024 Score=50.96 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++++|.|+..+.+..+. .+...+ .+.|+++|+||+||.+... ......+..+.+..++.+|++++.|+++
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 5789999998876543331 121111 2568999999999964321 1222233344556677799999999999
Q ss_pred HHHHHHHHHh
Q 025200 73 LSRLAKALAS 82 (256)
Q Consensus 73 L~~~i~~l~~ 82 (256)
+.+.+.+...
T Consensus 158 l~~~l~~~~~ 167 (199)
T 2f9l_A 158 AFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 392
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.74 E-value=0.0043 Score=56.40 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHh
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~ 118 (256)
++..|+++|.|||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 393
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.69 E-value=0.0022 Score=61.38 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=29.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 40 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 40 (256)
+|.+++|+|+..........+.+.+. +.|+++|+||+|+.
T Consensus 98 ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 98 ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 68999999988765543334433332 68999999999986
No 394
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.64 E-value=0.00023 Score=62.73 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhhC--CCCEEEEEecCCCCChHH-HHHHHHH--H-HHcC-CeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY--F-AKQG-TKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~-~~~w~~~--~-~~~~-~~vi~~sa~~~~g~~~ 72 (256)
.|+|++|+|+..++...+. .+.+.+. ++|.++|+||+|+.++.. ...+.+. + .+.+ ..++.+||+++.|+++
T Consensus 168 ~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 168 NCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp TEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCC
T ss_pred CeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCccccccccc
Confidence 3688999999876655433 2444443 579999999999986543 2222210 0 0012 2456789999999888
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 248 l~~~l~~ 254 (353)
T 2x2e_A 248 ITAALAA 254 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 395
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.61 E-value=0.0028 Score=59.98 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|-+|+|||||+|+|.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999863
No 396
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.56 E-value=0.0011 Score=52.41 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCc-ccCCCCCceee
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRV 134 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~~~-~~~~~~g~T~~ 134 (256)
.++++|.+|+|||||+|.|.+.... ..+..+.+|+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~ 43 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP 43 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCC
Confidence 5899999999999999999975321 22344555554
No 397
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.55 E-value=0.0024 Score=59.51 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=32.3
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCCChH
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 43 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 43 (256)
+|.+|+|+|+..+.......+...+. +.|+++|+||+|+....
T Consensus 106 aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 106 VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 69999999999876544444444443 67999999999997643
No 398
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.43 E-value=0.002 Score=51.92 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred CcEEEEEEecC-CCCCCCC--HHHHHhh--------CCCCEEEEEecCCCCChHHHHHHHHHHH--------HcCCeEEE
Q 025200 1 MDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWATYFA--------KQGTKVIF 61 (256)
Q Consensus 1 ~Dvvi~VvDar-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w~~~~~--------~~~~~vi~ 61 (256)
+|++|+|+|+. ++.+..+ ..+.+++ .+.|+++|+||+|+.+.....++.+.+. ..+..++.
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 162 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 48999999998 5433221 1222222 3679999999999987544333322221 12234556
Q ss_pred ecCcCCcc
Q 025200 62 SNGQLGMG 69 (256)
Q Consensus 62 ~sa~~~~g 69 (256)
+|++.+.+
T Consensus 163 ~Sa~~~~~ 170 (218)
T 1nrj_B 163 VERKINEE 170 (218)
T ss_dssp --------
T ss_pred cccccccc
Confidence 77776653
No 399
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.43 E-value=0.0014 Score=57.88 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCCCC------CC--HH----HHHhh-----CCCCEEEEEecCCCCC--------------------hH
Q 025200 1 MDVVIEVRDARIPLST------TH--PL----MDQWL-----GNRKRILVLNREDMIS--------------------MA 43 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~------~~--~~----l~~~l-----~~k~~ilVlNK~DL~~--------------------~~ 43 (256)
+|.||+|+|..+.-+. .+ .+ +.... .+.|+|+|+||+||.. .+
T Consensus 217 a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~ 296 (353)
T 1cip_A 217 VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 296 (353)
T ss_dssp CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHH
T ss_pred CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHH
Confidence 6899999999864220 11 11 22222 3569999999999842 22
Q ss_pred HHHHHHH-HHH-------HcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 44 DRNAWAT-YFA-------KQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 44 ~~~~w~~-~~~-------~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
+..+|.. .|. ..+..++++||+++.|++++.+.+...
T Consensus 297 e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 3333432 111 123456789999999998877666543
No 400
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.42 E-value=0.0024 Score=60.81 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=36.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-----Ccc------cCC-CC-----CceeeeEEE---EeCCcEEEEecCCCCCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR-----MCP------AAP-RP-----GVTRVLKWV---RFGKDLEFLDSPGIIPM 155 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~-----~~~------~~~-~~-----g~T~~~~~~---~~~~~~~l~DtPGi~~~ 155 (256)
+|+++|+...|||||..+|.-.. ... +.+ .+ |+|-..... +-+..+.||||||-...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 48999999999999999996211 001 111 11 444433211 12456899999999864
No 401
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.42 E-value=0.011 Score=57.07 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 025200 98 VRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~ 118 (256)
-+|+++|+...|||||..+|.
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 369999999999999999996
No 402
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.37 E-value=0.0019 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
+++++|.+|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999753
No 403
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.37 E-value=0.0026 Score=59.47 Aligned_cols=52 Identities=23% Similarity=0.172 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCC-CCCCCHHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHH
Q 025200 1 MDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 52 (256)
Q Consensus 1 ~Dvvi~VvDar~p-~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~ 52 (256)
+|+||+|+|+..+ .......+.+.+. +.|+++|+||+|+++++++.+....+
T Consensus 189 aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 189 VDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp CSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 6999999999875 2322233444444 46899999999999887766555544
No 404
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0015 Score=51.62 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=32.6
Q ss_pred CcEEEEEEecC-CCCCCCC--HHHHHhh--------CCCCEEEEEecCCCCChHHHHHHHHHH
Q 025200 1 MDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWATYF 52 (256)
Q Consensus 1 ~Dvvi~VvDar-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w~~~~ 52 (256)
+|++|+|+|+. .+.+..+ ..+..++ .+.|+++|+||+|+.+.....++.+.+
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 48999999998 3322111 1122222 268999999999998765555544444
No 405
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.32 E-value=0.0028 Score=57.27 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=40.1
Q ss_pred CcEEEEEEecC-CCCCCCCHHHHHhhC-CCCEEEEEecCCCCChHHHHH----HHHHHHHcCCeEEEecCcCCcchhHH
Q 025200 1 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKL 73 (256)
Q Consensus 1 ~Dvvi~VvDar-~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~----w~~~~~~~~~~vi~~sa~~~~g~~~L 73 (256)
+|+++++++.. ..+...+..+.+.+. +.++|+|+||+|+.++.++.. ..+++...+..++.+|++++.+.+++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 217 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHH
Confidence 46777777654 344433333444443 578999999999998766543 33445556777778898887776643
No 406
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.27 E-value=0.0016 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.+..|+++|.||+||||+.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999998643
No 407
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.24 E-value=0.012 Score=56.59 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=30.5
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhh--CCCCEEEEEecCCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 41 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 41 (256)
+|.+|+|+|+..........+.+.. .+.|.++|+||+|+..
T Consensus 106 aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 106 LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 6999999999987654433333333 2679999999999864
No 408
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.24 E-value=0.0031 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+-.++++|.||+||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999975
No 409
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.23 E-value=0.0034 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
+--|+++|.+|+||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468999999999999999999764
No 410
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.17 E-value=0.0051 Score=52.96 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=29.2
Q ss_pred CCCEEEEEecCCCCChHHHH----HHHHHHHHcCCeEEEecCcCCcchhHHHHHHH
Q 025200 27 NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 78 (256)
Q Consensus 27 ~k~~ilVlNK~DL~~~~~~~----~w~~~~~~~~~~vi~~sa~~~~g~~~L~~~i~ 78 (256)
+.++++|+||+|+.++.++. +..++.++.+..++.+||+++ +++++...+.
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence 45899999999998765432 334445566777888999999 8877655443
No 411
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0025 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|.+|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999873
No 412
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.06 E-value=0.01 Score=55.48 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=31.6
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 40 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 40 (256)
+|-+|.|+||.......-..+.+... +.|+++++||+|..
T Consensus 124 ~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 124 VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred cCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 68999999999887765555555443 78999999999975
No 413
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.05 E-value=0.0047 Score=54.73 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCCCCC------CCH------HHHHhh-----CCCCEEEEEecCCCCC---------------------h
Q 025200 1 MDVVIEVRDARIPLST------THP------LMDQWL-----GNRKRILVLNREDMIS---------------------M 42 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~------~~~------~l~~~l-----~~k~~ilVlNK~DL~~---------------------~ 42 (256)
+|.||+|+|..+.-.. .+. .+.... .+.|+|+|+||+||.. .
T Consensus 225 ~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~ 304 (362)
T 1zcb_A 225 VTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL 304 (362)
T ss_dssp CCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCH
T ss_pred CCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCH
Confidence 5899999998863100 111 122222 3569999999999852 1
Q ss_pred HHHHHHH-HHHH-------HcCCeEEEecCcCCcchhHHHHHHHHHH
Q 025200 43 ADRNAWA-TYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 43 ~~~~~w~-~~~~-------~~~~~vi~~sa~~~~g~~~L~~~i~~l~ 81 (256)
++..+|. ..|. ..+..++++||+++.|++.+.+.+....
T Consensus 305 ~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 305 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 2223332 1121 1235677899999999988777665443
No 414
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.93 E-value=0.0046 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
.+..|+++|.+|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 415
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.88 E-value=0.0025 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 025200 97 AVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~ 118 (256)
+-.++++|.+|+||||+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999997
No 416
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.84 E-value=0.0043 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..|+++|.||+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 417
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.84 E-value=0.007 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHh
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~ 118 (256)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46779999999999999999997
No 418
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.81 E-value=0.0059 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~ 120 (256)
-.++++|.+|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999974
No 419
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.78 E-value=0.012 Score=46.67 Aligned_cols=79 Identities=15% Similarity=0.037 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCCCCCCH-HHHHhh-----CCCCEEEEEecCCCCChHH--HHHHHHHHHHcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~~~--~~~w~~~~~~~~~~vi~~sa~~~~g~~~ 72 (256)
+|.++.|.|...+.+..+. .+...+ .+.|+++|+||+||.+... .....++..+.+..++.+|++++.++++
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 4678899998765432221 111111 2468999999999964321 1222233344456677799999999998
Q ss_pred HHHHHHH
Q 025200 73 LSRLAKA 79 (256)
Q Consensus 73 L~~~i~~ 79 (256)
+.+.+.+
T Consensus 182 l~~~l~~ 188 (191)
T 1oix_A 182 AFQTILT 188 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 420
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.78 E-value=0.006 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
+..|+++|.+|+||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998754
No 421
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.76 E-value=0.0049 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|.+|+|||||+|.|.|-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999999743
No 422
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.74 E-value=0.0082 Score=54.44 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHh
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~ 118 (256)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 423
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.71 E-value=0.0071 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~ 119 (256)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 424
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.67 E-value=0.0075 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
.+..|.++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 425
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.66 E-value=0.0059 Score=48.33 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|.+|+|||||++.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999864
No 426
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.64 E-value=0.0052 Score=49.26 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCcc-cCCCCCceeee
Q 025200 100 AGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVL 135 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~~~~-~~~~~g~T~~~ 135 (256)
|.++|-+||||+||++.|....... .-..+.|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 6899999999999999998654321 23556667653
No 427
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.64 E-value=0.0066 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+..|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 428
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.63 E-value=0.0071 Score=48.43 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+-.|+++|.+|+||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999863
No 429
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.62 E-value=0.0033 Score=55.39 Aligned_cols=74 Identities=9% Similarity=-0.022 Sum_probs=44.5
Q ss_pred CcEEEEEEecCCCCCCCC--HHHHHhhC--CCCEEEEEecCCCCChHHHHHHHHHHH----HcCCeEEEecCcCCcchhH
Q 025200 1 MDVVIEVRDARIPLSTTH--PLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMK 72 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~--~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~~~----~~~~~vi~~sa~~~~g~~~ 72 (256)
+|++|+|+|+........ ..+.+.+. ++|.++|+||+|++++.. .+.+.++ ..+..++.++++++.++++
T Consensus 173 ~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 173 PNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGT--DAVEILEGRSFKLKYPWVGVVNRSQADINK 250 (360)
T ss_dssp SSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTC--CSHHHHTTSSSCCSSCCEEECCCCHHHHHT
T ss_pred CCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcc--cHHHHHcCccccccCCeEEEEECChHHhcc
Confidence 588999998753322212 22333333 579999999999987542 1222222 2234567788888877765
Q ss_pred HHHH
Q 025200 73 LSRL 76 (256)
Q Consensus 73 L~~~ 76 (256)
....
T Consensus 251 ~~~~ 254 (360)
T 3t34_A 251 NVDM 254 (360)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 5443
No 430
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.61 E-value=0.0061 Score=50.04 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.-.++++|.+|+|||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4468999999999999999999854
No 431
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.61 E-value=0.006 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|.+|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999843
No 432
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.59 E-value=0.0063 Score=48.07 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999985
No 433
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.59 E-value=0.0089 Score=47.58 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+..|+++|.||+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 434
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.58 E-value=0.0064 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 025200 100 AGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 100 i~~~G~pnvGKSslin~l~~~~ 121 (256)
++++|.+|+|||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999743
No 435
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.55 E-value=0.0083 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 025200 97 AVRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~ 118 (256)
+..|+++|.||+||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999999
No 436
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.54 E-value=0.0079 Score=46.23 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 025200 99 RAGIVGYPNVGKSSLINRL 117 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l 117 (256)
.|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 437
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.52 E-value=0.009 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 438
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.52 E-value=0.0086 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+..|+++|.+|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999863
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.51 E-value=0.0071 Score=54.69 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=44.5
Q ss_pred EEEEEEecCCCCCCCCHHHHHhhC-CCCEEEEEecCCCCChHHHHHHHHHHH----HcCCeEEEecC
Q 025200 3 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFSNG 64 (256)
Q Consensus 3 vvi~VvDar~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~w~~~~~----~~~~~vi~~sa 64 (256)
++++|+|++.+++..+.++.+.+. +.|+|+|+||+|.+++.++....+.++ ..|..++++|.
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 478899999888876666766665 679999999999998887766555444 45677888875
No 440
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.50 E-value=0.0096 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
...|+++|.||+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 441
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.45 E-value=0.0079 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.5
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 025200 98 VRAGIVGYPNVGKSSLINRLL 118 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~ 118 (256)
-.++++|.+|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357999999999999999865
No 442
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.43 E-value=0.01 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+..|+++|.+|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999863
No 443
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.42 E-value=0.0086 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.|+++|.||+||||+.+.|..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.36 E-value=0.0083 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 445
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.34 E-value=0.0095 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
.|+++|.||+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.32 E-value=0.009 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999843
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.31 E-value=0.0084 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 448
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.27 E-value=0.012 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..|.++|.||+||||+.+.|..+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999863
No 449
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.27 E-value=0.011 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~ 119 (256)
..|++.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 450
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.26 E-value=0.013 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 451
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.23 E-value=0.014 Score=52.46 Aligned_cols=24 Identities=4% Similarity=-0.087 Sum_probs=18.2
Q ss_pred eEEEecCcCCcchhHHHHHHHHHH
Q 025200 58 KVIFSNGQLGMGTMKLSRLAKALA 81 (256)
Q Consensus 58 ~vi~~sa~~~~g~~~L~~~i~~l~ 81 (256)
.++++||+++.+++.+...+....
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHH
Confidence 456899999999988777665543
No 452
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 453
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.23 E-value=0.011 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
++..|+++|.|++||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
No 454
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.20 E-value=0.014 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
.+..|+++|.||+||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 455
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.20 E-value=0.014 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
....|+++|.||+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999864
No 456
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.20 E-value=0.01 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999999874
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.20 E-value=0.011 Score=51.06 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
.-.++++|.+|+|||||++.|.|
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999999986
No 458
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.19 E-value=0.013 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~ 119 (256)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 459
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.19 E-value=0.01 Score=56.48 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.8
Q ss_pred CcEEEEEEecCCCCCCCCHHHHHhhC--CCCEEEEEecCCCC
Q 025200 1 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 40 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 40 (256)
+|.+|.|+||.......-..+.+... +.|.|+++||+|..
T Consensus 91 ~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 91 LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 69999999999887776555555443 67999999999974
No 460
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.17 E-value=0.013 Score=46.92 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
....|+++|.|++||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999975
No 461
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=49.18 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.15 E-value=0.012 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 025200 98 VRAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~~~ 121 (256)
-.++++|..|+|||||++.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999854
No 463
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.15 E-value=0.011 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
+..|+++|.||+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 464
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.15 E-value=0.012 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
++..|++.|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
No 465
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.14 E-value=0.0055 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 466
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.13 E-value=0.052 Score=44.48 Aligned_cols=76 Identities=11% Similarity=-0.073 Sum_probs=43.6
Q ss_pred CcEEEEEEecCCCCCCC-CHHH---HHhh------CCCCEEEEEecC-CCCChHHHHHHHHHHH--H--cCCeEEEecCc
Q 025200 1 MDVVIEVRDARIPLSTT-HPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA--K--QGTKVIFSNGQ 65 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~-~~~l---~~~l------~~k~~ilVlNK~-DL~~~~~~~~w~~~~~--~--~~~~vi~~sa~ 65 (256)
+|.||+|+|+.+..-.. ..++ ..++ .+.|+++..||. |+...-...+..+.+. + ..-.+..+||.
T Consensus 126 TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~ 205 (227)
T 3l82_B 126 VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAE 205 (227)
T ss_dssp CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETT
T ss_pred CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECC
Confidence 58999999997652211 1233 2222 245888889996 6743222233333321 1 11246678999
Q ss_pred CCcchhHHHHH
Q 025200 66 LGMGTMKLSRL 76 (256)
Q Consensus 66 ~~~g~~~L~~~ 76 (256)
+|.|+.+=.+.
T Consensus 206 TGeGL~EGLdW 216 (227)
T 3l82_B 206 TLTGFLNGIEW 216 (227)
T ss_dssp TCTTHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 99997654443
No 467
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.12 E-value=0.013 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 025200 98 VRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 98 ~~i~~~G~pnvGKSslin~l~~ 119 (256)
-.|+++|.||+||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 468
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.10 E-value=0.015 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.|++||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 469
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.09 E-value=0.015 Score=46.31 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~ 119 (256)
.+..|+++|.|++||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.08 E-value=0.011 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 471
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.08 E-value=0.012 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 472
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.08 E-value=0.013 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
.|+++|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 473
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.07 E-value=0.013 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 474
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.06 E-value=0.015 Score=51.26 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=17.5
Q ss_pred eEEEecCcCCcchhHHHHHHHHH
Q 025200 58 KVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 58 ~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
.++++||+++.|++++.+.+...
T Consensus 320 ~~~eTSA~d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 320 KIYRTTALDQKLVKKTFKLVDET 342 (354)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEEeecchhHHHHHHHHHHH
Confidence 35789999999998877665543
No 475
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.04 E-value=0.013 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999853
No 476
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.04 E-value=0.015 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.|++||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999975
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.03 E-value=0.014 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|..|+|||||++.|.|-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
No 478
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.02 E-value=0.015 Score=50.28 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..+..|+++|-+|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678999999999999999999873
No 479
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.016 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|.++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.99 E-value=0.014 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999853
No 481
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.98 E-value=0.023 Score=49.60 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCCCCCCC-HHHHHhh-------CCCCEEEEEecCCCCChH
Q 025200 1 MDVVIEVRDARIPLSTTH-PLMDQWL-------GNRKRILVLNREDMISMA 43 (256)
Q Consensus 1 ~Dvvi~VvDar~p~~~~~-~~l~~~l-------~~k~~ilVlNK~DL~~~~ 43 (256)
+|.+|+|.|+.++ .... ..+.+++ .+.|+++|.||+||.+++
T Consensus 73 a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 73 VGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred CCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 5899999999887 2211 1222222 356899999999998753
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.95 E-value=0.017 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999975
No 483
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.94 E-value=0.014 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999843
No 484
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.94 E-value=0.015 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|..|+|||||++.|.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999985
No 485
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.92 E-value=0.015 Score=48.62 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999854
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.92 E-value=0.015 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|..|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
No 487
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.90 E-value=0.015 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57999999999999999999853
No 488
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.90 E-value=0.018 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.+++||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999986
No 489
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.89 E-value=0.018 Score=50.27 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=47.0
Q ss_pred CcEEEEEEecCC------CCCCCCH------HHHHhh-----CCCCEEEEEecCCCCChH------------------HH
Q 025200 1 MDVVIEVRDARI------PLSTTHP------LMDQWL-----GNRKRILVLNREDMISMA------------------DR 45 (256)
Q Consensus 1 ~Dvvi~VvDar~------p~~~~~~------~l~~~l-----~~k~~ilVlNK~DL~~~~------------------~~ 45 (256)
++.+|+|+|... ..++.+. .+.... .+.|+++++||+||.... ..
T Consensus 191 ~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~ 270 (327)
T 3ohm_A 191 VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA 270 (327)
T ss_dssp CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCH
T ss_pred CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCH
Confidence 578999997641 1112221 122222 356999999999985422 12
Q ss_pred HHHHHHHH----------HcCCeEEEecCcCCcchhHHHHHHHHH
Q 025200 46 NAWATYFA----------KQGTKVIFSNGQLGMGTMKLSRLAKAL 80 (256)
Q Consensus 46 ~~w~~~~~----------~~~~~vi~~sa~~~~g~~~L~~~i~~l 80 (256)
++-.+|+. +.+..+.++||+++.+++.+.+.+...
T Consensus 271 e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 271 QAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp HHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 22233322 122456789999999988777666543
No 490
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.88 E-value=0.018 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcC
Q 025200 96 RAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 96 ~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
++..|+++|.+++||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 491
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.88 E-value=0.017 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.|++||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.87 E-value=0.016 Score=48.15 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.86 E-value=0.016 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|..|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 494
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.015 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999853
No 495
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.83 E-value=0.013 Score=47.71 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~ 120 (256)
.++++|..|+|||||++.|.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999986
No 496
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.83 E-value=0.016 Score=47.29 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 025200 97 AVRAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 97 ~~~i~~~G~pnvGKSslin~l~~ 119 (256)
+..|+++|.||+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 497
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.83 E-value=0.016 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 025200 99 RAGIVGYPNVGKSSLINRLLKRR 121 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~~~ 121 (256)
.++++|..|+|||||++.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999853
No 498
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.82 E-value=0.017 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
+|++.|.|++||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 499
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.81 E-value=0.029 Score=46.72 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhcC
Q 025200 95 PRAVRAGIVGYPNVGKSSLINRLLKR 120 (256)
Q Consensus 95 ~~~~~i~~~G~pnvGKSslin~l~~~ 120 (256)
..+..|+++|.||+||||+.+.|.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999753
No 500
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.80 E-value=0.019 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 025200 99 RAGIVGYPNVGKSSLINRLLK 119 (256)
Q Consensus 99 ~i~~~G~pnvGKSslin~l~~ 119 (256)
+|++.|.|++||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
Done!