BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025203
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
Length = 258
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Query: 72 YMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFK---KHGFG 128
Y T+ + KA + +L L + + K A + D+D+T+L P+ K G G
Sbjct: 27 YQTAGEMKALYYQGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKG 86
Query: 129 GERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVG 188
W+ W+ +++A AL +++ +++GV I+ +S+R+ + T+ NL VG
Sbjct: 87 ----YPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVG 142
Query: 189 YHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL 239
A+ E L+D +K + + R+ LV + + I GD S F G
Sbjct: 143 -APQATKEHILLQDPKEKGK----EKRRELVSQTHDIVLFFGDNLSDFTGF 188
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 110 DVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLV 169
D+D+T+L PY + + W W+ ++ A+ + + + + K+F V
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 170 SSRRESL-RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228
++R++S +S T+D++ +G++G KK + KA + K+GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFY-----LKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 229 VGDQWSSF 236
VGD F
Sbjct: 179 VGDNLDDF 186
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 110 DVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLV 169
D+D+T++ Y G+ + +W W+ ++ A+ + + + G +F V
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 170 SSRRESL-RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228
S+RR+ + ++ TVD++ +G+ G L +D+ K ++ K++ GY I
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSNKSVRF-----KQVEDMGYDIVLF 178
Query: 229 VGDQWSSF 236
VGD + F
Sbjct: 179 VGDNLNDF 186
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 110 DVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLV 169
++D+T+L PY + + W W+ ++ A+ + + + + K+F V
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 170 SSRRESL-RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228
++R++S +S T+D++ +G++G KK + KA + K+GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFY-----LKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 229 VGDQWSSF 236
VGD F
Sbjct: 179 VGDNLDDF 186
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 110 DVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLV 169
D+++T+L PY + + W W+ ++ A+ + + + + K+F V
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 170 SSRRESL-RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228
++R++S +S T+D++ +G++G KK + KA + K+GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFY-----LKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 229 VGDQWSSF 236
VGD F
Sbjct: 179 VGDNLDDF 186
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 110 DVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLV 169
D+D+T+L PY + + W W+ ++ A+ + + + + K+F V
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 170 SSRRESL-RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228
++R++S ++ T+D++ +G++G KK + KA + K+GY I
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEESAFY-----LKKDKSAKAARFAEIEKQGYEIVLY 179
Query: 229 VGDQWSSF 236
VGD F
Sbjct: 180 VGDNLDDF 187
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 140 WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG 199
W ++ APA+ LF I I+ L+++ D YH L
Sbjct: 396 WTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADD----FCYHPLGGCVLGK 451
Query: 200 LEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230
D+Y +V YK V +G I G VG
Sbjct: 452 ATDDYGRVAGYK----NLYVTDGSLIPGSVG 478
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 140 WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG 199
W ++ APA+ LF I I+ L+++ D YH L
Sbjct: 396 WTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADD----FCYHPLGGCVLGK 451
Query: 200 LEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230
D+Y +V YK V +G I G VG
Sbjct: 452 ATDDYGRVAGYK----NLYVTDGSLIPGSVG 478
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 140 WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG 199
W ++ APA+ LF I I+ L+++ D YH L
Sbjct: 396 WTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADD----FCYHPLGGCVLGK 451
Query: 200 LEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230
D+Y +V YK V +G I G VG
Sbjct: 452 ATDDYGRVAGYK----NLYVTDGSLIPGSVG 478
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 140 WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG 199
W ++ APA+ LF I I+ L+++ D YH L
Sbjct: 396 WTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADD----FCYHPLGGCVLGK 451
Query: 200 LEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230
D+Y +V YK V +G I G VG
Sbjct: 452 ATDDYGRVAGYK----NLYVTDGSLIPGSVG 478
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 140 WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG 199
W ++ APA+ LF I I+ L+++ D YH L
Sbjct: 394 WTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADD----FCYHPLGGCVLGK 449
Query: 200 LEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230
D+Y +V YK V +G I G VG
Sbjct: 450 ATDDYGRVAGYK----NLYVTDGSLIPGSVG 476
>pdb|3N8T|A Chain A, Native Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3N92|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose
pdb|3N98|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose And Additives
Length = 562
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 114 TLLSTIPYFKKHG---FGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVS 170
L + IPY +KHG FG E W+ E+ + L F +++ GVK +V
Sbjct: 8 VLHTHIPYVRKHGKWPFG---------EEWVFEAISETYIPLLMEFERLRDSGVKFGIVI 58
Query: 171 SRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYK 205
+ L D + + + +L+ +E++ K
Sbjct: 59 NVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLK 93
>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
Binding Antigen 140 (Pfeba-140BAEBL)
Length = 615
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 127 FGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGV 164
FGG RL SS+ ++MK+SK +E NL+ + KN GV
Sbjct: 212 FGGCRLPCSSYTSFMKKSKT-QMEVLTNLYKK-KNSGV 247
>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|B Chain B, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|C Chain C, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|D Chain D, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|E Chain E, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|F Chain F, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|G Chain G, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|H Chain H, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
Length = 176
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 116 LSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFL 168
LS YF GF G + WMK+ L H + + I RG ++ L
Sbjct: 39 LSMATYFDAEGFKG-------FAHWMKKQAQEELTHAMKFYEYIYERGGRVEL 84
>pdb|1Z4A|A Chain A, Ferritin From T. Maritima
pdb|1Z4A|B Chain B, Ferritin From T. Maritima
pdb|1Z4A|C Chain C, Ferritin From T. Maritima
pdb|1Z4A|D Chain D, Ferritin From T. Maritima
pdb|1Z4A|E Chain E, Ferritin From T. Maritima
pdb|1Z4A|F Chain F, Ferritin From T. Maritima
pdb|1Z4A|G Chain G, Ferritin From T. Maritima
pdb|1Z4A|H Chain H, Ferritin From T. Maritima
Length = 164
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 116 LSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFL 168
LS YF GF G + WMK+ L H + + I RG ++ L
Sbjct: 27 LSMATYFDAEGFKG-------FAHWMKKQAQEELTHAMKFYEYIYERGGRVEL 72
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 69 IKKYM-TSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGF 127
IKK + S+ + D +A +E + L C L G+G D L P + +
Sbjct: 187 IKKALGDSASVRVDVNQAWDEA-VALRACRILGGNGID----------LIEQPISRNNRA 235
Query: 128 GGERLNASSWEAWMKESKAPALEHTLNLFHE 158
G RLNASS M + +E NL E
Sbjct: 236 GMVRLNASSPAPIMADESIECVEDAFNLARE 266
>pdb|4GZV|A Chain A, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|B Chain B, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|C Chain C, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|D Chain D, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|E Chain E, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|F Chain F, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|G Chain G, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|H Chain H, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
Length = 142
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 55 IREFEVVP-QECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWI-FDVD 112
I F ++P + I I Y T Q DS + + E ++L D +D + F++
Sbjct: 47 IVNFTIIPGADAI--ITGYGTYKQLTDDSYKESIEKNIHLPXL-----DNQDNILEFEIK 99
Query: 113 DTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPA 148
D + YF K G LN +E W K + PA
Sbjct: 100 DNDYLHLKYFIKSDLNGNELNTWYYETW-KRVEXPA 134
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 142 KESKAPALEHTL------NLFHEIKNRGVKIFLVSSRRESL 176
KE++A LEH + +L +I N+G + FLVS R + +
Sbjct: 71 KENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQV 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,032,913
Number of Sequences: 62578
Number of extensions: 325996
Number of successful extensions: 814
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 25
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)