Query 025203
Match_columns 256
No_of_seqs 331 out of 1895
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 9.8E-75 2.1E-79 500.5 21.6 219 37-256 11-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 3.3E-70 7.2E-75 479.3 22.1 215 37-254 37-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 1.1E-54 2.4E-59 378.3 3.8 214 37-255 10-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 3.7E-40 7.9E-45 291.9 21.5 183 64-254 35-238 (266)
5 COG2503 Predicted secreted aci 100.0 1.2E-35 2.7E-40 253.8 15.5 182 65-254 40-242 (274)
6 PRK11009 aphA acid phosphatase 99.9 7.3E-23 1.6E-27 178.9 11.1 144 101-253 60-218 (237)
7 TIGR01672 AphA HAD superfamily 99.8 1.5E-19 3.2E-24 158.1 12.7 138 100-248 59-210 (237)
8 COG0546 Gph Predicted phosphat 99.6 1.4E-15 3.1E-20 131.4 11.3 140 104-249 4-189 (220)
9 PRK14988 GMP/IMP nucleotidase; 99.6 3.1E-15 6.7E-20 129.8 10.0 102 145-252 91-197 (224)
10 PRK13226 phosphoglycolate phos 99.6 9.5E-15 2.1E-19 126.9 11.9 139 104-248 12-194 (229)
11 PLN02770 haloacid dehalogenase 99.6 9.7E-15 2.1E-19 128.4 12.0 101 144-250 105-209 (248)
12 PRK11587 putative phosphatase; 99.6 1.2E-14 2.6E-19 125.1 12.4 142 104-251 3-184 (218)
13 PRK13288 pyrophosphatase PpaX; 99.6 1.1E-14 2.4E-19 124.7 11.6 140 104-249 3-182 (214)
14 PLN03243 haloacid dehalogenase 99.6 1.4E-14 3.1E-19 128.5 11.8 101 144-250 106-210 (260)
15 COG0637 Predicted phosphatase/ 99.6 1.5E-14 3.2E-19 125.4 10.7 142 104-251 2-188 (221)
16 PLN02575 haloacid dehalogenase 99.6 1.9E-14 4.1E-19 133.5 11.6 100 145-250 214-317 (381)
17 TIGR03351 PhnX-like phosphonat 99.6 1.8E-14 4E-19 123.6 10.7 100 145-250 85-192 (220)
18 TIGR01422 phosphonatase phosph 99.6 8.8E-15 1.9E-19 128.6 8.5 102 144-251 96-203 (253)
19 TIGR01990 bPGM beta-phosphoglu 99.5 5E-14 1.1E-18 117.2 11.7 95 146-248 86-184 (185)
20 TIGR01449 PGP_bact 2-phosphogl 99.5 3.9E-14 8.5E-19 120.6 11.1 99 145-249 83-185 (213)
21 TIGR02253 CTE7 HAD superfamily 99.5 4E-14 8.6E-19 121.3 11.1 102 145-252 92-198 (221)
22 PRK10826 2-deoxyglucose-6-phos 99.5 1.1E-13 2.4E-18 119.2 13.4 101 145-251 90-194 (222)
23 TIGR01428 HAD_type_II 2-haloal 99.5 6.6E-14 1.4E-18 118.4 11.5 102 144-251 89-194 (198)
24 TIGR01454 AHBA_synth_RP 3-amin 99.5 6.7E-14 1.4E-18 119.1 11.0 99 144-248 72-174 (205)
25 PRK13225 phosphoglycolate phos 99.5 7.1E-14 1.5E-18 124.9 11.6 141 102-250 60-240 (273)
26 PRK13223 phosphoglycolate phos 99.5 2E-13 4.2E-18 121.9 13.2 144 101-250 10-202 (272)
27 PHA02530 pseT polynucleotide k 99.5 2.5E-13 5.5E-18 122.1 13.8 132 102-249 156-296 (300)
28 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 1.7E-13 3.7E-18 114.1 11.4 95 145-247 86-184 (185)
29 TIGR01656 Histidinol-ppas hist 99.5 6E-14 1.3E-18 113.9 7.9 126 105-250 1-146 (147)
30 PRK06698 bifunctional 5'-methy 99.5 1.6E-13 3.5E-18 130.9 11.6 100 145-250 328-428 (459)
31 TIGR01548 HAD-SF-IA-hyp1 haloa 99.5 1.2E-13 2.7E-18 116.9 9.5 88 147-240 106-195 (197)
32 PLN02779 haloacid dehalogenase 99.5 3.1E-13 6.7E-18 121.5 12.5 100 146-251 143-248 (286)
33 PRK13478 phosphonoacetaldehyde 99.5 1.3E-13 2.8E-18 122.3 9.5 100 145-250 99-204 (267)
34 PLN02940 riboflavin kinase 99.5 2.9E-13 6.3E-18 126.4 11.4 144 102-251 9-196 (382)
35 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 1.3E-13 2.9E-18 109.3 7.6 123 105-248 1-130 (132)
36 PRK10725 fructose-1-P/6-phosph 99.5 5.9E-13 1.3E-17 111.3 11.7 97 145-249 86-186 (188)
37 PRK13222 phosphoglycolate phos 99.5 7.7E-13 1.7E-17 113.5 12.7 100 145-250 91-194 (226)
38 PRK09449 dUMP phosphatase; Pro 99.4 6.4E-13 1.4E-17 114.3 10.5 98 145-249 93-196 (224)
39 TIGR01993 Pyr-5-nucltdase pyri 99.4 4.7E-13 1E-17 112.0 9.3 94 145-247 82-183 (184)
40 TIGR01261 hisB_Nterm histidino 99.4 3.6E-13 7.9E-18 111.4 8.3 127 105-250 2-148 (161)
41 TIGR02252 DREG-2 REG-2-like, H 99.4 5.3E-13 1.2E-17 113.1 9.2 94 146-246 104-202 (203)
42 TIGR01664 DNA-3'-Pase DNA 3'-p 99.4 6.8E-13 1.5E-17 110.2 8.5 125 103-245 12-158 (166)
43 PRK09456 ?-D-glucose-1-phospha 99.4 1.2E-12 2.6E-17 111.1 9.8 100 146-251 83-187 (199)
44 TIGR00213 GmhB_yaeD D,D-heptos 99.4 7.2E-13 1.6E-17 110.7 8.0 122 105-248 2-150 (176)
45 PRK08942 D,D-heptose 1,7-bisph 99.4 1.4E-12 3E-17 109.3 8.8 126 104-250 3-148 (181)
46 cd01427 HAD_like Haloacid deha 99.4 6.1E-13 1.3E-17 103.3 6.2 120 106-247 1-138 (139)
47 PRK06769 hypothetical protein; 99.4 6.5E-13 1.4E-17 110.9 6.2 124 103-248 3-136 (173)
48 TIGR01509 HAD-SF-IA-v3 haloaci 99.4 3.4E-12 7.4E-17 105.6 9.8 95 146-247 84-182 (183)
49 TIGR02247 HAD-1A3-hyp Epoxide 99.4 5.1E-12 1.1E-16 107.8 11.1 103 145-251 92-198 (211)
50 TIGR01549 HAD-SF-IA-v1 haloaci 99.4 1.2E-12 2.7E-17 106.1 6.7 128 106-240 1-151 (154)
51 PF13419 HAD_2: Haloacid dehal 99.4 7.4E-13 1.6E-17 107.7 5.5 101 143-247 73-175 (176)
52 PRK10563 6-phosphogluconate ph 99.4 5.4E-12 1.2E-16 108.4 10.5 95 145-248 86-185 (221)
53 COG2179 Predicted hydrolase of 99.4 5.9E-12 1.3E-16 103.1 10.1 110 100-248 24-137 (175)
54 TIGR02254 YjjG/YfnB HAD superf 99.3 8.5E-12 1.8E-16 106.7 10.3 97 145-248 95-197 (224)
55 PHA02597 30.2 hypothetical pro 99.3 1E-11 2.2E-16 105.0 10.5 138 104-250 2-175 (197)
56 PRK10748 flavin mononucleotide 99.3 1E-11 2.2E-16 108.5 10.3 94 145-250 111-209 (238)
57 PLN02954 phosphoserine phospha 99.3 2.6E-11 5.7E-16 104.2 12.1 140 103-245 11-191 (224)
58 TIGR01689 EcbF-BcbF capsule bi 99.3 1.8E-11 3.9E-16 97.2 9.4 75 105-200 2-88 (126)
59 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 2.6E-11 5.7E-16 102.0 11.1 106 144-252 77-193 (201)
60 PRK13582 thrH phosphoserine ph 99.2 2.4E-11 5.2E-16 103.0 8.2 130 105-239 2-160 (205)
61 PLN02919 haloacid dehalogenase 99.2 5.8E-11 1.3E-15 123.3 12.6 99 147-251 161-264 (1057)
62 TIGR01489 DKMTPPase-SF 2,3-dik 99.2 1E-10 2.2E-15 97.2 11.4 99 145-246 70-185 (188)
63 TIGR00338 serB phosphoserine p 99.2 9.5E-11 2.1E-15 100.4 10.8 140 103-251 13-197 (219)
64 TIGR01685 MDP-1 magnesium-depe 99.2 1.4E-11 3E-16 103.1 4.8 137 104-251 2-159 (174)
65 smart00775 LNS2 LNS2 domain. T 99.2 2.2E-10 4.8E-15 94.3 11.8 127 106-248 1-148 (157)
66 PRK05446 imidazole glycerol-ph 99.2 1.9E-10 4.2E-15 106.1 10.4 127 103-251 1-149 (354)
67 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 2.1E-10 4.6E-15 91.1 8.4 111 105-238 1-123 (128)
68 COG1011 Predicted hydrolase (H 99.1 7.3E-10 1.6E-14 95.0 11.6 101 145-252 97-202 (229)
69 KOG2914 Predicted haloacid-hal 99.1 4.6E-10 9.9E-15 97.3 9.6 147 102-251 8-198 (222)
70 TIGR01670 YrbI-phosphatas 3-de 99.1 1E-10 2.2E-15 95.8 5.2 115 105-250 2-119 (154)
71 COG3700 AphA Acid phosphatase 99.1 6.5E-10 1.4E-14 92.1 9.7 144 99-253 58-218 (237)
72 PF08235 LNS2: LNS2 (Lipin/Ned 99.1 5.5E-10 1.2E-14 91.6 9.1 126 106-248 1-148 (157)
73 TIGR01668 YqeG_hyp_ppase HAD s 99.1 6.3E-10 1.4E-14 92.6 9.5 110 102-249 23-136 (170)
74 PF13344 Hydrolase_6: Haloacid 99.1 8.9E-10 1.9E-14 84.2 9.5 58 107-191 1-58 (101)
75 PRK09552 mtnX 2-hydroxy-3-keto 99.1 6.1E-10 1.3E-14 96.0 9.1 132 104-240 3-177 (219)
76 TIGR02726 phenyl_P_delta pheny 99.1 9.6E-11 2.1E-15 97.7 3.9 118 104-251 7-126 (169)
77 PLN02811 hydrolase 99.1 7.3E-10 1.6E-14 95.5 9.5 102 145-251 76-186 (220)
78 TIGR01493 HAD-SF-IA-v2 Haloaci 99.0 2.3E-10 5E-15 94.6 4.5 83 145-240 88-173 (175)
79 smart00577 CPDc catalytic doma 99.0 4.6E-10 1E-14 91.3 4.9 127 103-240 1-132 (148)
80 TIGR01663 PNK-3'Pase polynucle 99.0 2.1E-09 4.6E-14 103.9 9.6 119 102-239 166-300 (526)
81 PRK09484 3-deoxy-D-manno-octul 98.9 8.6E-10 1.9E-14 92.8 4.3 112 103-244 20-134 (183)
82 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.9 7.5E-09 1.6E-13 87.4 9.9 103 146-251 86-200 (202)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 6.1E-09 1.3E-13 91.2 9.3 102 102-238 6-110 (242)
84 TIGR02137 HSK-PSP phosphoserin 98.9 1.1E-08 2.4E-13 87.6 10.3 96 145-245 66-167 (203)
85 PRK11133 serB phosphoserine ph 98.9 2.5E-08 5.4E-13 91.2 13.1 99 144-251 178-291 (322)
86 TIGR01488 HAD-SF-IB Haloacid D 98.9 1.5E-08 3.3E-13 83.5 9.8 93 144-239 70-174 (177)
87 TIGR01684 viral_ppase viral ph 98.8 1E-08 2.2E-13 91.8 8.5 73 102-201 124-197 (301)
88 PLN02645 phosphoglycolate phos 98.8 1.3E-08 2.7E-13 92.7 9.1 70 103-199 27-96 (311)
89 TIGR01686 FkbH FkbH-like domai 98.8 1E-08 2.2E-13 93.5 8.2 113 103-240 2-120 (320)
90 TIGR03333 salvage_mtnX 2-hydro 98.8 3.8E-08 8.3E-13 84.5 10.1 98 145-246 68-179 (214)
91 COG0241 HisB Histidinol phosph 98.8 3.7E-08 7.9E-13 82.7 9.6 124 104-249 5-149 (181)
92 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.8 3.6E-08 7.8E-13 87.3 9.2 64 105-191 2-65 (257)
93 COG0560 SerB Phosphoserine pho 98.8 8.7E-08 1.9E-12 82.7 11.1 98 146-246 76-184 (212)
94 PRK10444 UMP phosphatase; Prov 98.8 4.9E-08 1.1E-12 86.1 9.8 67 105-198 2-68 (248)
95 PRK08238 hypothetical protein; 98.7 5.7E-08 1.2E-12 93.3 10.3 135 102-246 8-162 (479)
96 KOG1615 Phosphoserine phosphat 98.7 1.4E-07 3.1E-12 79.3 11.2 141 104-247 16-197 (227)
97 PRK11590 hypothetical protein; 98.7 1.2E-07 2.6E-12 81.4 10.2 103 146-251 94-205 (211)
98 TIGR01452 PGP_euk phosphoglyco 98.7 9E-08 2E-12 85.6 9.8 62 104-192 2-63 (279)
99 PF09419 PGP_phosphatase: Mito 98.7 2.9E-07 6.2E-12 76.6 11.1 119 99-251 36-166 (168)
100 COG0647 NagD Predicted sugar p 98.6 1.4E-07 3E-12 84.1 9.1 99 102-227 6-115 (269)
101 PHA03398 viral phosphatase sup 98.6 1.1E-07 2.5E-12 85.2 8.5 73 102-201 126-199 (303)
102 KOG3085 Predicted hydrolase (H 98.6 2.1E-07 4.5E-12 81.3 8.8 103 146-253 112-217 (237)
103 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.6 2.6E-07 5.6E-12 81.5 9.5 61 105-192 2-62 (249)
104 PF06941 NT5C: 5' nucleotidase 98.6 1.9E-07 4.1E-12 78.9 7.6 126 107-251 5-164 (191)
105 PF06888 Put_Phosphatase: Puta 98.5 1.6E-06 3.5E-11 75.9 11.6 131 106-239 2-185 (234)
106 TIGR01691 enolase-ppase 2,3-di 98.5 3.3E-07 7.1E-12 79.6 7.0 106 137-249 83-196 (220)
107 COG1778 Low specificity phosph 98.4 2.1E-07 4.5E-12 75.8 4.1 108 103-238 7-114 (170)
108 PRK10530 pyridoxal phosphate ( 98.4 6E-07 1.3E-11 79.2 7.1 59 104-191 3-61 (272)
109 PRK01158 phosphoglycolate phos 98.4 6.5E-07 1.4E-11 77.1 7.0 59 104-191 3-61 (230)
110 PRK10513 sugar phosphate phosp 98.4 1E-06 2.2E-11 77.9 8.3 58 104-190 3-60 (270)
111 PF08645 PNK3P: Polynucleotide 98.4 3.2E-07 6.9E-12 75.7 4.8 109 105-235 1-130 (159)
112 PF12710 HAD: haloacid dehalog 98.4 1.2E-06 2.5E-11 72.9 8.1 84 150-237 92-189 (192)
113 PRK10976 putative hydrolase; P 98.4 7.1E-07 1.5E-11 78.8 7.1 60 104-192 2-61 (266)
114 PRK15126 thiamin pyrimidine py 98.4 7.2E-07 1.6E-11 79.1 7.1 60 104-192 2-61 (272)
115 TIGR01487 SPP-like sucrose-pho 98.4 1E-06 2.3E-11 75.4 7.3 57 105-190 2-58 (215)
116 PRK00192 mannosyl-3-phosphogly 98.4 8.9E-07 1.9E-11 78.8 7.0 60 104-192 4-63 (273)
117 TIGR01545 YfhB_g-proteo haloac 98.3 5.3E-06 1.1E-10 71.4 10.3 102 146-251 93-204 (210)
118 COG0561 Cof Predicted hydrolas 98.3 1.5E-06 3.3E-11 76.6 7.0 59 104-191 3-61 (264)
119 PRK03669 mannosyl-3-phosphogly 98.3 1.9E-06 4E-11 76.7 7.1 59 103-190 6-64 (271)
120 TIGR01482 SPP-subfamily Sucros 98.3 1.5E-06 3.3E-11 74.4 6.2 55 107-190 1-55 (225)
121 TIGR02463 MPGP_rel mannosyl-3- 98.3 1.8E-06 3.9E-11 74.1 6.6 55 107-190 2-56 (221)
122 TIGR02251 HIF-SF_euk Dullard-l 98.2 1.7E-06 3.8E-11 71.5 5.6 124 104-240 1-129 (162)
123 TIGR00099 Cof-subfamily Cof su 98.2 2.5E-06 5.5E-11 74.9 6.8 57 106-191 1-57 (256)
124 TIGR02461 osmo_MPG_phos mannos 98.2 2.5E-06 5.5E-11 74.1 6.7 56 106-191 1-56 (225)
125 PF08282 Hydrolase_3: haloacid 98.2 2.4E-06 5.2E-11 73.2 6.5 56 107-191 1-56 (254)
126 PRK12702 mannosyl-3-phosphogly 98.2 4.2E-06 9E-11 75.3 7.1 59 104-191 1-59 (302)
127 PTZ00174 phosphomannomutase; P 98.2 3E-06 6.4E-11 74.5 6.0 47 103-175 4-50 (247)
128 TIGR01460 HAD-SF-IIA Haloacid 98.2 3.7E-06 8E-11 73.5 6.4 58 107-191 1-59 (236)
129 TIGR01486 HAD-SF-IIB-MPGP mann 98.2 4E-06 8.7E-11 73.8 6.6 56 107-191 2-57 (256)
130 TIGR01544 HAD-SF-IE haloacid d 98.2 1.3E-05 2.9E-10 71.7 9.8 108 130-240 104-228 (277)
131 TIGR02250 FCP1_euk FCP1-like p 98.2 1.9E-05 4.1E-10 65.0 9.8 141 102-254 4-156 (156)
132 KOG3120 Predicted haloacid deh 98.1 2.7E-05 6E-10 66.9 10.0 135 100-237 9-196 (256)
133 KOG3040 Predicted sugar phosph 98.1 1.8E-05 3.9E-10 67.5 8.6 101 102-240 5-106 (262)
134 PLN02887 hydrolase family prot 98.1 8.4E-06 1.8E-10 80.0 7.6 59 103-190 307-365 (580)
135 PF11019 DUF2608: Protein of u 98.1 9.3E-05 2E-09 65.6 13.0 88 103-190 19-124 (252)
136 TIGR01456 CECR5 HAD-superfamil 98.0 1.1E-05 2.4E-10 73.7 6.9 59 106-191 2-65 (321)
137 KOG2882 p-Nitrophenyl phosphat 98.0 1E-05 2.2E-10 72.4 6.0 97 102-225 20-128 (306)
138 PF12689 Acid_PPase: Acid Phos 98.0 1.4E-05 2.9E-10 66.7 5.7 137 104-251 3-153 (169)
139 PF00702 Hydrolase: haloacid d 98.0 1.2E-05 2.6E-10 67.8 5.3 87 145-239 125-211 (215)
140 TIGR02244 HAD-IG-Ncltidse HAD 97.9 3E-05 6.5E-10 71.5 8.1 100 146-248 183-322 (343)
141 PTZ00445 p36-lilke protein; Pr 97.9 7.5E-05 1.6E-09 64.1 9.6 166 67-251 11-207 (219)
142 KOG3109 Haloacid dehalogenase- 97.9 8.9E-05 1.9E-09 63.8 9.5 141 102-247 13-203 (244)
143 COG4850 Uncharacterized conser 97.9 5.7E-05 1.2E-09 68.3 8.5 124 105-238 162-293 (373)
144 PRK14502 bifunctional mannosyl 97.9 3.9E-05 8.5E-10 76.0 7.6 61 101-190 413-473 (694)
145 TIGR01484 HAD-SF-IIB HAD-super 97.8 5.3E-05 1.1E-09 64.1 6.2 45 107-176 2-46 (204)
146 TIGR01485 SPP_plant-cyano sucr 97.8 6.4E-05 1.4E-09 65.9 6.5 60 105-190 2-61 (249)
147 KOG2116 Protein involved in pl 97.7 0.00026 5.7E-09 69.1 10.9 128 105-248 531-679 (738)
148 TIGR01512 ATPase-IB2_Cd heavy 97.7 4.5E-05 9.8E-10 74.4 5.8 82 145-240 360-442 (536)
149 PLN02423 phosphomannomutase 97.7 5.3E-05 1.1E-09 66.7 5.6 46 102-174 4-50 (245)
150 TIGR01525 ATPase-IB_hvy heavy 97.7 0.0001 2.2E-09 72.3 7.8 82 145-240 382-464 (556)
151 TIGR01511 ATPase-IB1_Cu copper 97.7 0.00015 3.3E-09 71.2 8.4 81 145-240 403-483 (562)
152 PRK10187 trehalose-6-phosphate 97.6 8.2E-05 1.8E-09 66.3 5.5 52 104-176 14-66 (266)
153 TIGR02471 sucr_syn_bact_C sucr 97.5 0.00021 4.6E-09 62.0 6.8 54 106-190 1-54 (236)
154 PLN03017 trehalose-phosphatase 97.5 0.00016 3.4E-09 67.2 6.1 66 88-175 95-160 (366)
155 COG5083 SMP2 Uncharacterized p 97.5 0.00024 5.1E-09 66.6 7.2 121 103-239 374-510 (580)
156 COG4996 Predicted phosphatase 97.5 0.00051 1.1E-08 54.7 7.8 120 105-234 1-127 (164)
157 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.5 4.2E-05 9.2E-10 66.9 1.6 97 148-248 139-240 (242)
158 COG4359 Uncharacterized conser 97.4 0.0011 2.5E-08 55.6 9.2 94 144-241 70-177 (220)
159 TIGR01452 PGP_euk phosphoglyco 97.4 0.00011 2.4E-09 65.7 2.6 96 149-248 145-246 (279)
160 PF05152 DUF705: Protein of un 97.3 0.00096 2.1E-08 59.6 8.1 73 102-200 120-192 (297)
161 TIGR01522 ATPase-IIA2_Ca golgi 97.3 0.0008 1.7E-08 69.5 8.1 92 145-240 526-634 (884)
162 PLN02151 trehalose-phosphatase 97.2 0.00072 1.6E-08 62.6 6.0 64 89-174 83-146 (354)
163 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.0 0.00027 5.9E-09 62.6 1.3 96 149-250 122-225 (257)
164 TIGR00685 T6PP trehalose-phosp 97.0 0.0013 2.9E-08 57.5 5.4 51 103-174 2-53 (244)
165 PF03031 NIF: NLI interacting 96.9 0.0012 2.7E-08 53.6 4.6 128 105-249 1-130 (159)
166 COG5663 Uncharacterized conser 96.9 0.0023 5E-08 53.0 5.7 129 106-249 8-161 (194)
167 COG1877 OtsB Trehalose-6-phosp 96.8 0.0018 3.8E-08 57.8 5.1 55 101-176 15-70 (266)
168 PLN02382 probable sucrose-phos 96.8 0.0037 7.9E-08 59.3 7.5 65 100-190 5-69 (413)
169 PRK14501 putative bifunctional 96.8 0.0017 3.6E-08 65.7 5.3 53 102-175 490-543 (726)
170 KOG1618 Predicted phosphatase 96.8 0.0058 1.3E-07 55.5 8.0 63 102-191 33-100 (389)
171 PRK11033 zntA zinc/cadmium/mer 96.8 0.0031 6.7E-08 64.0 6.9 80 145-240 566-645 (741)
172 PLN02580 trehalose-phosphatase 96.8 0.003 6.4E-08 59.2 6.2 53 102-176 117-169 (384)
173 PRK10671 copA copper exporting 96.7 0.0039 8.5E-08 64.1 7.2 82 145-240 648-729 (834)
174 COG2217 ZntA Cation transport 96.6 0.0054 1.2E-07 61.8 7.3 80 145-238 535-614 (713)
175 COG3769 Predicted hydrolase (H 96.6 0.0018 3.9E-08 56.0 3.0 58 104-188 7-64 (274)
176 TIGR01106 ATPase-IIC_X-K sodiu 96.5 0.014 2.9E-07 61.3 10.0 90 145-238 566-698 (997)
177 TIGR01517 ATPase-IIB_Ca plasma 96.5 0.0093 2E-07 62.1 8.7 89 145-238 577-683 (941)
178 TIGR01497 kdpB K+-transporting 96.5 0.013 2.7E-07 58.9 9.2 80 145-238 444-523 (675)
179 PRK14010 potassium-transportin 96.5 0.012 2.7E-07 58.9 8.9 79 145-238 439-518 (673)
180 PLN02205 alpha,alpha-trehalose 96.3 0.0065 1.4E-07 62.6 5.8 51 102-175 594-645 (854)
181 TIGR01116 ATPase-IIA1_Ca sarco 96.3 0.023 4.9E-07 59.2 9.6 91 145-239 535-646 (917)
182 PRK01122 potassium-transportin 96.2 0.024 5.2E-07 57.0 9.1 79 145-238 443-522 (679)
183 TIGR01647 ATPase-IIIA_H plasma 96.2 0.029 6.3E-07 57.2 9.8 89 145-238 440-549 (755)
184 PF05116 S6PP: Sucrose-6F-phos 96.1 0.0063 1.4E-07 53.6 4.1 59 104-191 2-60 (247)
185 COG4087 Soluble P-type ATPase 96.1 0.03 6.6E-07 44.7 7.4 80 146-238 29-108 (152)
186 TIGR01524 ATPase-IIIB_Mg magne 96.1 0.034 7.3E-07 57.6 9.9 89 145-238 513-617 (867)
187 PRK10517 magnesium-transportin 96.1 0.035 7.6E-07 57.7 9.8 89 145-238 548-652 (902)
188 COG3882 FkbH Predicted enzyme 96.0 0.043 9.3E-07 52.5 9.4 117 100-234 218-338 (574)
189 TIGR02245 HAD_IIID1 HAD-superf 96.0 0.012 2.7E-07 50.1 5.2 68 98-189 15-83 (195)
190 PRK15122 magnesium-transportin 95.9 0.043 9.2E-07 57.1 9.7 88 145-238 548-652 (903)
191 TIGR01523 ATPase-IID_K-Na pota 95.9 0.029 6.3E-07 59.2 8.4 90 145-238 644-760 (1053)
192 COG4229 Predicted enolase-phos 95.5 0.072 1.6E-06 44.9 7.8 92 145-248 101-203 (229)
193 KOG0202 Ca2+ transporting ATPa 95.1 0.092 2E-06 53.3 8.3 90 145-238 582-692 (972)
194 KOG2134 Polynucleotide kinase 95.0 0.046 1E-06 50.9 5.5 116 102-234 73-202 (422)
195 PLN02645 phosphoglycolate phos 94.9 0.014 3.1E-07 53.0 2.1 90 154-248 177-274 (311)
196 PF02358 Trehalose_PPase: Treh 94.9 0.025 5.5E-07 49.1 3.6 46 108-174 1-47 (235)
197 COG0474 MgtA Cation transport 94.7 0.13 2.8E-06 53.7 8.5 89 145-238 545-653 (917)
198 KOG0207 Cation transport ATPas 94.6 0.12 2.7E-06 52.7 7.8 100 102-238 701-800 (951)
199 PF06189 5-nucleotidase: 5'-nu 94.4 0.1 2.2E-06 46.3 6.0 152 76-249 89-258 (264)
200 TIGR01494 ATPase_P-type ATPase 94.3 0.19 4.1E-06 48.6 8.2 76 145-238 345-421 (499)
201 PF05761 5_nucleotid: 5' nucle 94.1 0.043 9.2E-07 52.6 3.2 39 149-187 185-223 (448)
202 TIGR01657 P-ATPase-V P-type AT 94.0 0.16 3.4E-06 53.8 7.5 43 145-190 654-696 (1054)
203 KOG2470 Similar to IMP-GMP spe 93.9 0.082 1.8E-06 48.8 4.5 34 149-182 242-275 (510)
204 PLN03063 alpha,alpha-trehalose 93.9 0.091 2E-06 53.9 5.4 64 102-186 505-569 (797)
205 PLN03064 alpha,alpha-trehalose 93.6 0.12 2.6E-06 53.8 5.6 70 102-186 589-659 (934)
206 PF13242 Hydrolase_like: HAD-h 93.2 0.055 1.2E-06 38.4 1.9 44 204-250 3-50 (75)
207 TIGR01460 HAD-SF-IIA Haloacid 92.8 0.06 1.3E-06 46.9 1.8 46 203-248 186-233 (236)
208 TIGR01457 HAD-SF-IIA-hyp2 HAD- 92.6 0.17 3.7E-06 44.4 4.5 96 150-250 124-224 (249)
209 PLN02177 glycerol-3-phosphate 91.5 3.1 6.7E-05 40.6 11.9 37 148-191 111-148 (497)
210 PRK10530 pyridoxal phosphate ( 90.4 0.41 9E-06 41.8 4.6 98 147-250 137-242 (272)
211 PF09949 DUF2183: Uncharacteri 90.2 1.3 2.7E-05 33.7 6.4 72 165-237 1-79 (100)
212 PF10307 DUF2410: Hypothetical 87.5 5.1 0.00011 34.2 9.0 87 150-237 57-147 (197)
213 KOG2882 p-Nitrophenyl phosphat 87.0 1 2.2E-05 40.9 4.5 91 150-247 168-267 (306)
214 PRK00192 mannosyl-3-phosphogly 86.5 1.6 3.4E-05 38.6 5.6 86 158-251 143-235 (273)
215 TIGR02463 MPGP_rel mannosyl-3- 86.4 2 4.4E-05 36.4 6.1 37 213-249 183-221 (221)
216 KOG3189 Phosphomannomutase [Li 86.2 1.7 3.7E-05 37.3 5.3 43 104-173 11-53 (252)
217 PF05822 UMPH-1: Pyrimidine 5' 85.5 7.8 0.00017 34.3 9.3 103 132-240 75-196 (246)
218 COG2216 KdpB High-affinity K+ 85.1 3.4 7.3E-05 40.4 7.3 79 145-238 445-524 (681)
219 PF06437 ISN1: IMP-specific 5' 85.1 7.6 0.00016 36.5 9.4 68 80-175 127-194 (408)
220 PF00702 Hydrolase: haloacid d 85.0 0.55 1.2E-05 39.0 1.9 23 212-234 133-155 (215)
221 TIGR01652 ATPase-Plipid phosph 82.6 5.1 0.00011 42.6 8.2 30 145-174 629-658 (1057)
222 KOG2961 Predicted hydrolase (H 82.6 9.4 0.0002 31.5 7.9 104 103-240 42-157 (190)
223 TIGR01456 CECR5 HAD-superfamil 82.5 1.6 3.4E-05 39.9 3.9 25 224-248 264-290 (321)
224 COG5610 Predicted hydrolase (H 82.3 5.7 0.00012 38.3 7.5 103 134-239 80-191 (635)
225 cd06591 GH31_xylosidase_XylS X 80.9 3 6.6E-05 38.0 5.1 25 147-171 63-87 (319)
226 PRK10444 UMP phosphatase; Prov 79.3 1.7 3.7E-05 38.3 2.8 46 203-249 172-219 (248)
227 PLN03190 aminophospholipid tra 79.1 9 0.00019 41.3 8.6 30 145-174 724-753 (1178)
228 PF10137 TIR-like: Predicted n 76.5 11 0.00023 29.8 6.4 64 165-234 1-64 (125)
229 TIGR01485 SPP_plant-cyano sucr 75.9 5.7 0.00012 34.5 5.2 39 213-251 171-212 (249)
230 KOG4549 Magnesium-dependent ph 75.7 3.6 7.8E-05 32.8 3.4 81 103-190 4-85 (144)
231 TIGR01487 SPP-like sucrose-pho 75.5 4.1 8.9E-05 34.4 4.1 39 213-251 151-191 (215)
232 KOG1605 TFIIF-interacting CTD 72.1 2.7 5.8E-05 37.5 2.2 84 100-186 85-169 (262)
233 PF07511 DUF1525: Protein of u 70.1 8.9 0.00019 29.9 4.4 50 60-110 41-90 (114)
234 PF13701 DDE_Tnp_1_4: Transpos 69.6 26 0.00057 33.6 8.5 19 102-120 137-155 (448)
235 TIGR03757 conj_TIGR03757 integ 65.9 12 0.00027 29.0 4.4 50 60-110 42-91 (113)
236 COG4502 5'(3')-deoxyribonucleo 65.6 18 0.00039 29.5 5.4 55 145-200 66-123 (180)
237 cd06598 GH31_transferase_CtsZ 65.4 15 0.00033 33.4 5.7 44 146-189 66-109 (317)
238 cd00532 MGS-like MGS-like doma 63.6 57 0.0012 24.7 7.9 65 150-231 12-77 (112)
239 PRK12342 hypothetical protein; 63.4 1.1E+02 0.0024 27.2 11.3 80 158-240 46-126 (254)
240 TIGR02886 spore_II_AA anti-sig 61.3 41 0.00088 24.8 6.6 41 148-193 56-96 (106)
241 PLN02499 glycerol-3-phosphate 61.0 6.2 0.00013 38.4 2.4 33 155-191 101-134 (498)
242 cd06416 GH25_Lys1-like Lys-1 i 60.9 40 0.00086 28.2 7.1 68 83-174 67-134 (196)
243 KOG0204 Calcium transporting A 60.2 37 0.00079 35.4 7.6 90 145-239 645-754 (1034)
244 PF13605 DUF4141: Domain of un 60.1 5.5 0.00012 26.9 1.3 25 2-27 2-26 (55)
245 PF04312 DUF460: Protein of un 60.0 19 0.00041 29.0 4.6 53 106-186 45-97 (138)
246 TIGR02468 sucrsPsyn_pln sucros 59.8 26 0.00055 37.4 6.7 44 150-196 787-836 (1050)
247 COG0647 NagD Predicted sugar p 58.8 7.8 0.00017 34.7 2.5 43 203-248 188-234 (269)
248 PF01740 STAS: STAS domain; I 58.4 16 0.00034 27.5 3.8 58 103-192 47-104 (117)
249 PF02142 MGS: MGS-like domain 58.1 13 0.00029 27.3 3.3 72 151-234 1-72 (95)
250 COG2044 Predicted peroxiredoxi 58.1 13 0.00027 29.3 3.2 50 105-173 36-85 (120)
251 cd05008 SIS_GlmS_GlmD_1 SIS (S 57.1 17 0.00036 27.7 3.9 27 150-176 60-86 (126)
252 COG1501 Alpha-glucosidases, fa 57.1 21 0.00046 36.7 5.6 44 146-189 317-360 (772)
253 cd06415 GH25_Cpl1-like Cpl-1 l 56.7 28 0.0006 29.2 5.5 67 81-174 65-132 (196)
254 cd06414 GH25_LytC-like The Lyt 56.6 22 0.00047 29.7 4.8 70 81-174 68-137 (191)
255 cd07041 STAS_RsbR_RsbS_like Su 56.2 53 0.0012 24.3 6.5 57 103-191 40-96 (109)
256 cd06525 GH25_Lyc-like Lyc mura 55.9 30 0.00065 28.6 5.5 64 83-174 64-128 (184)
257 smart00851 MGS MGS-like domain 55.7 21 0.00045 25.9 4.0 31 152-190 2-32 (90)
258 cd06523 GH25_PlyB-like PlyB is 55.2 50 0.0011 27.3 6.7 60 81-173 65-125 (177)
259 cd05014 SIS_Kpsf KpsF-like pro 55.2 19 0.00041 27.5 3.9 29 148-176 59-87 (128)
260 cd06595 GH31_xylosidase_XylS-l 54.9 17 0.00038 32.6 4.1 26 147-172 71-96 (292)
261 PF09198 T4-Gluco-transf: Bact 54.4 4.5 9.7E-05 24.4 0.1 13 52-64 9-21 (38)
262 KOG3128 Uncharacterized conser 54.2 58 0.0013 29.2 7.0 54 130-186 121-174 (298)
263 TIGR01482 SPP-subfamily Sucros 53.3 9.3 0.0002 32.2 2.0 39 213-251 153-193 (225)
264 PF01380 SIS: SIS domain SIS d 52.2 24 0.00052 26.7 4.0 27 150-176 67-93 (131)
265 COG0381 WecB UDP-N-acetylgluco 52.1 44 0.00095 31.5 6.3 96 152-248 19-131 (383)
266 smart00266 CAD Domains present 51.7 11 0.00025 27.0 1.9 21 104-124 38-58 (74)
267 cd05013 SIS_RpiR RpiR-like pro 51.6 22 0.00049 26.9 3.8 26 150-175 74-99 (139)
268 TIGR01486 HAD-SF-IIB-MPGP mann 50.8 47 0.001 28.8 6.1 29 223-251 194-222 (256)
269 cd06539 CIDE_N_A CIDE_N domain 50.5 12 0.00026 27.2 1.8 22 103-124 39-60 (78)
270 cd05710 SIS_1 A subgroup of th 50.4 25 0.00055 26.9 3.9 27 150-176 61-87 (120)
271 PF06415 iPGM_N: BPG-independe 50.2 1.1E+02 0.0025 26.6 8.2 85 146-230 10-103 (223)
272 COG0731 Fe-S oxidoreductases [ 50.1 25 0.00053 32.0 4.2 31 144-174 89-120 (296)
273 cd06524 GH25_YegX-like YegX is 50.0 43 0.00093 27.9 5.5 64 84-173 69-133 (194)
274 cd07043 STAS_anti-anti-sigma_f 49.8 65 0.0014 22.8 5.9 40 147-191 54-93 (99)
275 cd01424 MGS_CPS_II Methylglyox 49.7 1.1E+02 0.0023 22.9 7.4 33 150-190 13-45 (110)
276 cd08198 DHQS-like2 Dehydroquin 49.5 71 0.0015 29.9 7.4 88 163-250 30-133 (369)
277 cd06593 GH31_xylosidase_YicI Y 49.3 43 0.00093 30.1 5.8 25 147-171 63-87 (308)
278 PRK02261 methylaspartate mutas 49.0 1.3E+02 0.0029 23.8 8.4 80 152-235 43-125 (137)
279 cd06592 GH31_glucosidase_KIAA1 48.6 56 0.0012 29.4 6.4 24 148-171 68-91 (303)
280 TIGR03127 RuMP_HxlB 6-phospho 48.4 26 0.00056 28.7 3.9 28 149-176 85-112 (179)
281 KOG3040 Predicted sugar phosph 48.3 12 0.00025 32.7 1.7 45 203-248 179-225 (262)
282 cd01615 CIDE_N CIDE_N domain, 48.0 16 0.00035 26.5 2.2 23 102-124 38-60 (78)
283 PRK01158 phosphoglycolate phos 47.9 13 0.00028 31.5 2.0 39 213-251 161-201 (230)
284 cd05017 SIS_PGI_PMI_1 The memb 47.4 28 0.00062 26.5 3.8 25 149-173 56-80 (119)
285 cd02072 Glm_B12_BD B12 binding 47.3 1.4E+02 0.0031 23.6 8.5 79 153-235 40-121 (128)
286 cd06537 CIDE_N_B CIDE_N domain 47.2 14 0.00031 26.9 1.8 23 103-125 38-60 (81)
287 cd06601 GH31_lyase_GLase GLase 47.0 40 0.00087 31.0 5.3 62 83-171 24-85 (332)
288 cd06536 CIDE_N_ICAD CIDE_N dom 46.7 14 0.0003 27.0 1.7 22 103-124 41-62 (80)
289 cd01421 IMPCH Inosine monophos 46.2 31 0.00068 29.2 4.0 34 149-190 10-43 (187)
290 cd06600 GH31_MGAM-like This fa 45.8 33 0.00071 31.2 4.5 24 148-171 62-85 (317)
291 PF03345 DDOST_48kD: Oligosacc 45.7 94 0.002 29.8 7.6 71 152-229 14-84 (423)
292 PRK00994 F420-dependent methyl 45.6 1.5E+02 0.0032 26.4 8.1 73 156-234 23-98 (277)
293 PRK12702 mannosyl-3-phosphogly 45.5 37 0.0008 31.0 4.6 28 225-252 228-255 (302)
294 cd01423 MGS_CPS_I_III Methylgl 45.5 1.3E+02 0.0028 22.7 8.1 69 150-232 13-81 (116)
295 PRK10658 putative alpha-glucos 45.4 40 0.00087 34.1 5.4 43 147-189 322-364 (665)
296 KOG0203 Na+/K+ ATPase, alpha s 45.4 1.3E+02 0.0028 31.6 8.7 59 102-175 560-618 (1019)
297 TIGR01691 enolase-ppase 2,3-di 45.3 32 0.0007 29.7 4.1 15 105-119 2-16 (220)
298 cd06538 CIDE_N_FSP27 CIDE_N do 45.3 16 0.00035 26.5 1.9 22 104-125 39-60 (79)
299 cd05006 SIS_GmhA Phosphoheptos 44.4 33 0.00071 28.1 3.9 29 148-176 113-141 (177)
300 TIGR00377 ant_ant_sig anti-ant 44.3 88 0.0019 22.8 6.0 58 103-192 42-99 (108)
301 cd08182 HEPD Hydroxyethylphosp 43.3 1.8E+02 0.0038 26.8 9.0 76 157-237 16-93 (367)
302 TIGR00441 gmhA phosphoheptose 43.3 36 0.00079 27.3 3.9 28 149-176 92-119 (154)
303 COG3603 Uncharacterized conser 42.6 50 0.0011 26.0 4.3 21 153-173 81-101 (128)
304 PRK13937 phosphoheptose isomer 42.6 36 0.00077 28.4 3.9 29 148-176 118-146 (188)
305 TIGR02471 sucr_syn_bact_C sucr 42.6 23 0.00049 30.3 2.8 39 213-251 163-203 (236)
306 COG2086 FixA Electron transfer 42.6 2.5E+02 0.0054 25.1 9.4 83 152-240 42-128 (260)
307 PF14336 DUF4392: Domain of un 42.6 1.1E+02 0.0023 27.8 7.2 42 148-191 61-102 (291)
308 PRK13762 tRNA-modifying enzyme 42.6 27 0.00058 32.0 3.4 37 145-184 140-176 (322)
309 PLN02331 phosphoribosylglycina 42.5 1.8E+02 0.0038 24.9 8.2 70 153-230 14-86 (207)
310 cd06522 GH25_AtlA-like AtlA is 42.1 76 0.0017 26.5 5.9 64 81-173 68-133 (192)
311 cd05005 SIS_PHI Hexulose-6-pho 41.8 38 0.00082 27.8 3.9 29 148-176 87-115 (179)
312 cd08183 Fe-ADH2 Iron-containin 41.2 1.4E+02 0.003 27.7 8.0 74 158-237 17-91 (374)
313 COG1184 GCD2 Translation initi 41.0 61 0.0013 29.6 5.3 42 150-191 130-173 (301)
314 cd06844 STAS Sulphate Transpor 41.0 1E+02 0.0022 22.5 5.8 39 148-191 56-94 (100)
315 cd06603 GH31_GANC_GANAB_alpha 40.3 44 0.00095 30.6 4.5 25 147-171 61-85 (339)
316 cd00599 GH25_muramidase Endo-N 40.3 63 0.0014 26.5 5.1 66 82-174 63-129 (186)
317 cd08197 DOIS 2-deoxy-scyllo-in 40.1 1.9E+02 0.0042 26.7 8.7 90 158-250 17-118 (355)
318 PRK06203 aroB 3-dehydroquinate 40.0 1.7E+02 0.0036 27.6 8.3 88 163-250 42-145 (389)
319 cd04795 SIS SIS domain. SIS (S 39.9 41 0.0009 23.4 3.4 21 150-170 61-81 (87)
320 cd03309 CmuC_like CmuC_like. P 39.9 2.9E+02 0.0064 25.2 9.8 50 132-191 187-237 (321)
321 PF04007 DUF354: Protein of un 39.3 75 0.0016 29.4 5.8 37 150-190 14-50 (335)
322 cd08181 PPD-like 1,3-propanedi 39.1 2.6E+02 0.0056 25.7 9.4 76 157-237 19-99 (357)
323 PF01183 Glyco_hydro_25: Glyco 38.6 52 0.0011 27.0 4.3 68 82-174 63-131 (181)
324 PF04123 DUF373: Domain of unk 38.6 91 0.002 29.0 6.2 31 145-175 46-78 (344)
325 TIGR00099 Cof-subfamily Cof su 38.6 21 0.00045 30.9 1.9 39 212-250 191-231 (256)
326 cd01452 VWA_26S_proteasome_sub 38.3 2E+02 0.0043 24.2 7.8 63 80-174 85-147 (187)
327 PRK05476 S-adenosyl-L-homocyst 37.3 1.4E+02 0.003 28.6 7.3 44 148-191 57-100 (425)
328 PRK10976 putative hydrolase; P 37.1 19 0.0004 31.3 1.4 39 212-250 193-233 (266)
329 TIGR02109 PQQ_syn_pqqE coenzym 36.9 77 0.0017 29.0 5.5 41 149-190 67-107 (358)
330 TIGR02495 NrdG2 anaerobic ribo 36.8 2.3E+02 0.005 23.0 8.9 37 150-189 77-113 (191)
331 cd01453 vWA_transcription_fact 36.8 1.8E+02 0.0038 24.0 7.2 21 153-173 126-146 (183)
332 PF05116 S6PP: Sucrose-6F-phos 36.6 45 0.00098 29.1 3.8 134 103-251 60-209 (247)
333 TIGR03590 PseG pseudaminic aci 36.4 2.6E+02 0.0056 24.6 8.7 38 150-190 18-55 (279)
334 TIGR01501 MthylAspMutase methy 34.9 2.3E+02 0.0051 22.5 8.6 80 152-235 41-123 (134)
335 cd08185 Fe-ADH1 Iron-containin 34.6 3.2E+02 0.007 25.3 9.3 77 156-237 18-99 (380)
336 PF10566 Glyco_hydro_97: Glyco 34.2 2.1E+02 0.0045 25.7 7.6 78 148-230 71-156 (273)
337 PF08282 Hydrolase_3: haloacid 34.1 19 0.00041 30.1 0.9 39 212-250 189-229 (254)
338 PF04055 Radical_SAM: Radical 34.0 2.1E+02 0.0046 21.7 8.6 40 150-190 60-102 (166)
339 PRK13938 phosphoheptose isomer 33.9 60 0.0013 27.5 3.9 29 148-176 125-153 (196)
340 COG2344 AT-rich DNA-binding pr 33.8 1.3E+02 0.0029 25.8 5.8 44 147-191 130-173 (211)
341 cd06604 GH31_glucosidase_II_Ma 33.5 75 0.0016 29.1 4.9 25 147-171 61-85 (339)
342 cd06533 Glyco_transf_WecG_TagA 33.3 2.7E+02 0.0058 22.7 8.5 38 148-186 31-68 (171)
343 PF13580 SIS_2: SIS domain; PD 33.2 53 0.0011 25.8 3.3 22 150-171 117-138 (138)
344 PRK05301 pyrroloquinoline quin 33.0 1E+02 0.0022 28.5 5.7 41 149-190 76-116 (378)
345 cd08189 Fe-ADH5 Iron-containin 32.8 3.6E+02 0.0078 24.9 9.4 77 156-237 18-99 (374)
346 KOG0323 TFIIF-interacting CTD 32.4 1.1E+02 0.0023 31.0 5.9 137 64-202 102-255 (635)
347 TIGR01370 cysRS possible cyste 32.3 2.4E+02 0.0053 25.9 7.9 28 150-177 187-218 (315)
348 PF02017 CIDE-N: CIDE-N domain 32.3 30 0.00064 25.1 1.5 22 103-124 39-60 (78)
349 cd01994 Alpha_ANH_like_IV This 32.3 1.6E+02 0.0034 24.8 6.3 64 150-225 75-140 (194)
350 PRK14021 bifunctional shikimat 32.2 1.8E+02 0.0038 28.7 7.4 91 157-250 203-303 (542)
351 cd06412 GH25_CH-type CH-type ( 32.1 2.1E+02 0.0045 23.9 7.0 69 85-174 68-139 (199)
352 PRK10624 L-1,2-propanediol oxi 32.1 4E+02 0.0087 24.7 9.5 77 156-237 22-103 (382)
353 PF09334 tRNA-synt_1g: tRNA sy 32.0 96 0.0021 29.2 5.4 66 153-223 26-112 (391)
354 COG1964 Predicted Fe-S oxidore 32.0 4.1E+02 0.0088 25.8 9.4 76 145-224 120-201 (475)
355 PF09587 PGA_cap: Bacterial ca 32.0 1.5E+02 0.0032 25.7 6.3 81 81-190 22-107 (250)
356 PRK10513 sugar phosphate phosp 31.9 33 0.00071 29.8 2.1 39 212-250 199-239 (270)
357 TIGR03278 methan_mark_10 putat 31.8 98 0.0021 29.4 5.4 43 148-190 87-130 (404)
358 PF03033 Glyco_transf_28: Glyc 31.8 76 0.0016 24.2 4.0 35 150-190 13-47 (139)
359 PRK13936 phosphoheptose isomer 31.6 68 0.0015 27.0 3.9 28 149-176 124-151 (197)
360 PRK00414 gmhA phosphoheptose i 31.6 67 0.0015 26.9 3.9 28 149-176 124-151 (192)
361 PRK10886 DnaA initiator-associ 31.6 69 0.0015 27.2 4.0 28 149-176 122-149 (196)
362 PRK05647 purN phosphoribosylgl 31.5 2.8E+02 0.0062 23.4 7.7 36 152-190 15-53 (200)
363 PF10907 DUF2749: Protein of u 31.5 37 0.00081 23.7 1.8 28 1-29 1-28 (66)
364 TIGR01357 aroB 3-dehydroquinat 31.4 2.3E+02 0.005 25.8 7.7 85 163-250 20-115 (344)
365 TIGR03470 HpnH hopanoid biosyn 31.1 3.7E+02 0.0081 24.3 9.0 41 148-190 85-125 (318)
366 COG0337 AroB 3-dehydroquinate 30.9 2.2E+02 0.0049 26.6 7.4 85 163-250 33-128 (360)
367 TIGR03527 selenium_YedF seleni 30.8 1.6E+02 0.0035 24.9 6.1 67 73-169 90-157 (194)
368 smart00463 SMR Small MutS-rela 30.7 1.2E+02 0.0027 21.1 4.7 28 147-174 13-42 (80)
369 cd08176 LPO Lactadehyde:propan 30.6 3.7E+02 0.008 24.9 9.0 77 155-236 19-100 (377)
370 cd00861 ProRS_anticodon_short 30.5 1.6E+02 0.0035 20.8 5.4 16 218-233 50-65 (94)
371 PF00465 Fe-ADH: Iron-containi 30.3 1.1E+02 0.0024 28.2 5.4 70 157-232 16-88 (366)
372 PF01055 Glyco_hydro_31: Glyco 30.3 96 0.0021 29.3 5.1 44 146-189 79-125 (441)
373 cd06602 GH31_MGAM_SI_GAA This 30.2 91 0.002 28.7 4.8 24 148-171 62-87 (339)
374 PF05221 AdoHcyase: S-adenosyl 30.1 78 0.0017 28.4 4.1 42 150-191 54-95 (268)
375 TIGR02638 lactal_redase lactal 29.4 4.4E+02 0.0095 24.4 9.3 77 156-237 21-102 (379)
376 PF03808 Glyco_tran_WecB: Glyc 29.3 3.2E+02 0.0068 22.3 8.5 41 146-187 31-71 (172)
377 TIGR00639 PurN phosphoribosylg 29.3 3.4E+02 0.0074 22.7 8.7 72 152-231 14-88 (190)
378 PRK15126 thiamin pyrimidine py 29.3 28 0.0006 30.4 1.2 39 212-250 191-231 (272)
379 PRK13717 conjugal transfer pro 29.2 1.8E+02 0.004 23.0 5.6 73 86-171 31-103 (128)
380 PRK05234 mgsA methylglyoxal sy 29.1 3E+02 0.0065 22.0 7.8 33 150-190 17-52 (142)
381 cd08190 HOT Hydroxyacid-oxoaci 28.9 4.9E+02 0.011 24.5 9.6 71 157-232 16-90 (414)
382 cd08186 Fe-ADH8 Iron-containin 28.8 3.9E+02 0.0085 24.8 8.9 81 152-237 14-100 (383)
383 cd02072 Glm_B12_BD B12 binding 28.7 1.4E+02 0.0029 23.7 4.9 45 147-191 62-111 (128)
384 cd00717 URO-D Uroporphyrinogen 28.7 4.4E+02 0.0095 23.8 9.1 48 132-190 204-253 (335)
385 KOG2832 TFIIF-interacting CTD 28.4 2.8E+02 0.006 26.2 7.4 70 103-191 188-257 (393)
386 smart00812 Alpha_L_fucos Alpha 28.1 1.7E+02 0.0037 27.5 6.3 66 153-230 84-149 (384)
387 TIGR00236 wecB UDP-N-acetylglu 28.1 2E+02 0.0044 26.0 6.7 85 150-238 14-102 (365)
388 COG0279 GmhA Phosphoheptose is 28.0 3.6E+02 0.0079 22.6 8.7 66 102-176 72-149 (176)
389 cd06417 GH25_LysA-like LysA is 27.8 1.7E+02 0.0036 24.4 5.7 61 84-173 62-123 (195)
390 cd08199 EEVS 2-epi-5-epi-valio 27.8 3E+02 0.0065 25.5 7.8 86 162-250 25-122 (354)
391 PRK15029 arginine decarboxylas 27.8 53 0.0011 33.9 3.0 33 153-185 73-107 (755)
392 TIGR00640 acid_CoA_mut_C methy 27.7 3E+02 0.0066 21.6 8.0 74 153-236 43-119 (132)
393 PF00578 AhpC-TSA: AhpC/TSA fa 27.6 1E+02 0.0022 22.8 4.0 40 148-190 44-83 (124)
394 COG0561 Cof Predicted hydrolas 27.3 39 0.00085 29.3 1.8 39 212-250 192-232 (264)
395 TIGR00696 wecB_tagA_cpsF bacte 27.2 3.6E+02 0.0078 22.3 7.5 44 146-191 31-74 (177)
396 COG1366 SpoIIAA Anti-anti-sigm 27.1 2.7E+02 0.0059 20.9 7.5 39 150-193 63-101 (117)
397 smart00481 POLIIIAc DNA polyme 27.1 2E+02 0.0043 19.2 5.1 23 152-174 17-39 (67)
398 PF07172 GRP: Glycine rich pro 27.1 52 0.0011 24.7 2.2 24 1-24 1-24 (95)
399 cd08550 GlyDH-like Glycerol_de 27.0 3.4E+02 0.0073 24.8 8.0 87 157-249 16-108 (349)
400 KOG1344 Predicted histone deac 27.0 3.9E+02 0.0084 23.8 7.7 100 64-189 218-322 (324)
401 cd01012 YcaC_related YcaC rela 27.0 3E+02 0.0064 21.9 6.8 28 146-173 19-46 (157)
402 cd03012 TlpA_like_DipZ_like Tl 26.9 1.2E+02 0.0026 22.9 4.3 43 148-190 41-86 (126)
403 cd02874 GH18_CFLE_spore_hydrol 26.6 2.7E+02 0.0059 24.8 7.2 76 153-228 48-143 (313)
404 PF05984 Cytomega_UL20A: Cytom 26.6 60 0.0013 23.9 2.3 15 103-117 68-82 (100)
405 PRK02947 hypothetical protein; 26.6 83 0.0018 27.5 3.7 25 150-174 120-144 (246)
406 PF00070 Pyr_redox: Pyridine n 26.5 2.1E+02 0.0047 19.7 5.3 24 151-174 10-33 (80)
407 PRK11337 DNA-binding transcrip 26.4 87 0.0019 27.7 3.9 29 148-176 199-227 (292)
408 COG0541 Ffh Signal recognition 26.4 2.8E+02 0.006 26.8 7.3 33 152-186 117-149 (451)
409 TIGR00685 T6PP trehalose-phosp 26.3 41 0.00088 29.1 1.7 28 213-240 171-200 (244)
410 cd08187 BDH Butanol dehydrogen 26.3 5.3E+02 0.011 23.9 9.4 75 157-236 22-101 (382)
411 KOG2900 Biotin synthase [Coenz 26.3 1.9E+02 0.0042 26.0 5.8 93 143-238 147-247 (380)
412 TIGR03365 Bsubt_queE 7-cyano-7 26.3 66 0.0014 27.9 3.0 25 150-174 87-111 (238)
413 cd03785 GT1_MurG MurG is an N- 26.1 3.9E+02 0.0085 23.5 8.2 25 150-174 14-38 (350)
414 TIGR00355 purH phosphoribosyla 26.0 92 0.002 30.6 4.1 35 149-191 10-44 (511)
415 cd06589 GH31 The enzymes of gl 25.9 1E+02 0.0022 27.1 4.2 44 147-192 63-110 (265)
416 PRK09860 putative alcohol dehy 25.9 5.4E+02 0.012 23.9 9.7 73 155-232 22-98 (383)
417 PRK00843 egsA NAD(P)-dependent 25.6 3.2E+02 0.0069 25.1 7.6 85 158-250 27-119 (350)
418 COG0695 GrxC Glutaredoxin and 25.4 2.5E+02 0.0054 19.8 6.4 57 166-232 3-62 (80)
419 cd01011 nicotinamidase Nicotin 25.4 2.9E+02 0.0063 22.9 6.7 38 153-190 127-165 (196)
420 COG4566 TtrR Response regulato 25.2 2.8E+02 0.006 23.8 6.4 32 153-186 64-97 (202)
421 TIGR00936 ahcY adenosylhomocys 25.2 1.3E+02 0.0029 28.6 5.0 45 148-192 41-85 (406)
422 PRK11557 putative DNA-binding 24.9 88 0.0019 27.4 3.6 30 147-176 186-215 (278)
423 TIGR00676 fadh2 5,10-methylene 24.8 4.9E+02 0.011 23.0 9.1 79 150-234 15-99 (272)
424 KOG0207 Cation transport ATPas 24.8 3.2E+02 0.0069 28.9 7.8 36 138-173 677-712 (951)
425 PF02254 TrkA_N: TrkA-N domain 24.7 2.8E+02 0.0062 20.3 6.8 24 151-174 9-32 (116)
426 PRK00075 cbiD cobalt-precorrin 24.6 1.4E+02 0.0031 27.9 5.0 40 78-118 315-354 (361)
427 cd02875 GH18_chitobiase Chitob 24.5 3.1E+02 0.0067 25.4 7.3 77 153-230 67-159 (358)
428 PRK15482 transcriptional regul 24.5 1E+02 0.0022 27.3 3.9 30 147-176 193-222 (285)
429 PF13478 XdhC_C: XdhC Rossmann 24.2 3.5E+02 0.0076 21.3 6.6 48 151-198 9-63 (136)
430 PRK15454 ethanol dehydrogenase 24.2 5.4E+02 0.012 24.1 8.9 73 155-232 40-116 (395)
431 cd01422 MGS Methylglyoxal synt 24.0 1.5E+02 0.0032 22.7 4.3 34 149-190 11-47 (115)
432 PHA03376 BARF1; Provisional 24.0 57 0.0012 28.0 2.0 19 1-22 1-19 (221)
433 cd02071 MM_CoA_mut_B12_BD meth 24.0 3.3E+02 0.0071 20.7 7.0 72 151-230 15-87 (122)
434 PRK15458 tagatose 6-phosphate 24.0 5.7E+02 0.012 24.6 8.9 80 146-226 23-124 (426)
435 KOG0209 P-type ATPase [Inorgan 23.7 3E+02 0.0065 29.1 7.3 30 145-174 673-702 (1160)
436 TIGR03471 HpnJ hopanoid biosyn 23.7 6.4E+02 0.014 24.0 12.4 34 80-119 227-260 (472)
437 PF00532 Peripla_BP_1: Peripla 23.7 5E+02 0.011 22.7 9.0 20 214-233 109-129 (279)
438 TIGR00815 sulP high affinity s 23.6 3.8E+02 0.0083 26.4 8.1 39 148-191 511-549 (563)
439 TIGR00221 nagA N-acetylglucosa 23.6 2.3E+02 0.0049 26.6 6.2 38 133-170 152-197 (380)
440 TIGR02244 HAD-IG-Ncltidse HAD 23.6 64 0.0014 30.0 2.5 16 102-117 10-25 (343)
441 cd00401 AdoHcyase S-adenosyl-L 23.6 1.5E+02 0.0032 28.3 5.0 43 149-191 46-88 (413)
442 cd08192 Fe-ADH7 Iron-containin 23.5 5.8E+02 0.013 23.4 9.5 78 155-237 15-97 (370)
443 PRK00881 purH bifunctional pho 23.2 1.1E+02 0.0024 30.1 4.1 35 149-191 14-48 (513)
444 KOG1204 Predicted dehydrogenas 23.2 2.4E+02 0.0051 25.0 5.7 115 37-172 30-146 (253)
445 TIGR02826 RNR_activ_nrdG3 anae 23.1 96 0.0021 25.0 3.2 25 150-174 75-99 (147)
446 cd08551 Fe-ADH iron-containing 23.1 5.9E+02 0.013 23.3 9.5 78 155-237 14-96 (370)
447 COG1817 Uncharacterized protei 23.1 83 0.0018 29.1 3.0 43 144-190 8-50 (346)
448 cd06599 GH31_glycosidase_Aec37 23.0 1.2E+02 0.0026 27.5 4.2 26 146-171 69-94 (317)
449 PF15240 Pro-rich: Proline-ric 23.0 56 0.0012 27.5 1.8 11 5-15 2-12 (179)
450 PRK10892 D-arabinose 5-phospha 22.8 1.1E+02 0.0023 27.7 3.8 27 148-174 106-132 (326)
451 PRK06242 flavodoxin; Provision 22.8 3.6E+02 0.0079 20.8 7.0 44 148-191 58-105 (150)
452 TIGR00393 kpsF KpsF/GutQ famil 22.8 1.1E+02 0.0024 26.5 3.8 27 148-174 59-85 (268)
453 PF00875 DNA_photolyase: DNA p 22.8 3.9E+02 0.0085 21.2 7.4 79 148-234 51-129 (165)
454 PLN00094 aconitate hydratase 2 22.7 5.5E+02 0.012 27.2 9.1 103 75-184 208-315 (938)
455 PRK10076 pyruvate formate lyas 22.5 83 0.0018 27.0 2.9 23 152-174 56-78 (213)
456 TIGR01464 hemE uroporphyrinoge 22.5 5.8E+02 0.013 23.0 9.8 48 132-190 207-256 (338)
457 cd05007 SIS_Etherase N-acetylm 22.5 1.2E+02 0.0026 26.8 3.9 27 150-176 132-158 (257)
458 PF13439 Glyco_transf_4: Glyco 22.5 1.2E+02 0.0025 23.3 3.6 25 151-175 17-41 (177)
459 PF01713 Smr: Smr domain; Int 22.4 1.3E+02 0.0029 21.1 3.6 43 147-190 10-58 (83)
460 cd08171 GlyDH-like2 Glycerol d 22.2 4.7E+02 0.01 23.8 8.0 88 157-249 16-109 (345)
461 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.1 1.3E+02 0.0028 23.3 3.8 25 150-174 76-100 (153)
462 PLN02834 3-dehydroquinate synt 22.0 5.4E+02 0.012 24.6 8.5 87 162-250 99-197 (433)
463 PRK11382 frlB fructoselysine-6 22.0 1.2E+02 0.0025 27.9 3.9 27 149-175 105-131 (340)
464 TIGR02026 BchE magnesium-proto 22.0 7.3E+02 0.016 24.0 12.2 39 152-190 257-299 (497)
465 PF03465 eRF1_3: eRF1 domain 3 22.0 1.5E+02 0.0032 22.7 3.9 24 152-175 71-94 (113)
466 PF02547 Queuosine_synth: Queu 21.9 1.7E+02 0.0038 27.1 5.0 44 146-189 180-225 (341)
467 PF13477 Glyco_trans_4_2: Glyc 21.8 3.5E+02 0.0076 20.2 8.3 72 150-230 11-82 (139)
468 PF03193 DUF258: Protein of un 21.6 1.7E+02 0.0038 24.0 4.5 33 153-185 2-34 (161)
469 cd08193 HVD 5-hydroxyvalerate 21.6 6.4E+02 0.014 23.2 9.5 76 157-237 19-99 (376)
470 PRK00115 hemE uroporphyrinogen 21.5 6.2E+02 0.013 23.0 9.2 48 132-190 213-262 (346)
471 PRK11543 gutQ D-arabinose 5-ph 21.4 1.2E+02 0.0026 27.1 3.9 27 148-174 101-127 (321)
472 cd03018 PRX_AhpE_like Peroxire 21.4 2E+02 0.0044 22.0 4.8 40 148-190 47-86 (149)
473 COG0809 QueA S-adenosylmethion 21.2 80 0.0017 29.3 2.6 24 148-171 184-207 (348)
474 PF00988 CPSase_sm_chain: Carb 21.2 1.1E+02 0.0025 24.3 3.2 36 135-170 94-131 (131)
475 TIGR00640 acid_CoA_mut_C methy 21.2 1.4E+02 0.0031 23.5 3.7 42 148-192 66-109 (132)
476 COG1660 Predicted P-loop-conta 21.1 1.1E+02 0.0023 27.7 3.2 27 165-191 2-28 (286)
477 TIGR01657 P-ATPase-V P-type AT 21.0 2.1E+02 0.0046 30.7 6.0 73 150-233 601-683 (1054)
478 COG2237 Predicted membrane pro 20.9 2.4E+02 0.0051 26.5 5.6 30 145-174 46-77 (364)
479 PRK09423 gldA glycerol dehydro 20.9 4.5E+02 0.0096 24.2 7.6 87 157-249 23-115 (366)
480 PLN02494 adenosylhomocysteinas 20.8 1.9E+02 0.0041 28.2 5.1 42 150-191 57-98 (477)
481 PF06418 CTP_synth_N: CTP synt 20.8 6.3E+02 0.014 22.8 8.3 41 75-117 103-147 (276)
482 cd03174 DRE_TIM_metallolyase D 20.7 3.9E+02 0.0084 22.9 6.8 38 148-190 49-89 (265)
483 PRK00994 F420-dependent methyl 20.7 1.5E+02 0.0033 26.3 4.0 44 144-190 68-111 (277)
484 PRK05441 murQ N-acetylmuramic 20.6 1.3E+02 0.0029 27.1 3.9 28 149-176 144-171 (299)
485 COG0143 MetG Methionyl-tRNA sy 20.6 2.5E+02 0.0054 28.0 6.0 25 152-176 31-55 (558)
486 PRK09426 methylmalonyl-CoA mut 20.5 9.4E+02 0.02 24.7 11.8 77 150-236 620-699 (714)
487 PF01993 MTD: methylene-5,6,7, 20.5 1.8E+02 0.0039 25.9 4.5 44 144-190 67-110 (276)
488 PHA00673 acetyltransferase dom 20.5 1.4E+02 0.003 24.5 3.6 38 152-192 107-144 (154)
489 cd08195 DHQS Dehydroquinate sy 20.3 6.1E+02 0.013 23.1 8.3 85 163-250 24-119 (345)
490 PF08269 Cache_2: Cache domain 20.2 73 0.0016 23.1 1.8 36 82-119 37-72 (95)
491 TIGR00274 N-acetylmuramic acid 20.1 1.4E+02 0.003 27.0 3.9 28 149-176 139-166 (291)
492 PF06543 Lac_bphage_repr: Lact 20.1 82 0.0018 20.6 1.7 26 136-161 19-44 (49)
493 smart00540 LEM in nuclear memb 20.0 1E+02 0.0022 19.7 2.2 31 153-186 9-39 (44)
494 PF03823 Neurokinin_B: Neuroki 20.0 1.1E+02 0.0023 20.8 2.3 22 1-22 1-22 (59)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=9.8e-75 Score=500.51 Aligned_cols=219 Identities=54% Similarity=1.003 Sum_probs=212.6
Q ss_pred ccccccccceeeeeeecCccCccccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCcc
Q 025203 37 DSLKTYCESWRINVELNNIREFEVVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLL 116 (256)
Q Consensus 37 ~~~~~~c~s~~~~~e~nn~~~~~~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTll 116 (256)
+....||.||||+||+||+++|+|||++|++||++||+||||++|++++.++|..|++++ .+++++++|||||||||+|
T Consensus 11 ~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~-~~~~dg~~A~V~DIDET~L 89 (229)
T TIGR01675 11 SIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSL-ALSGDGMDAWIFDVDDTLL 89 (229)
T ss_pred cCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHh-hccCCCCcEEEEccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999 7888999999999999999
Q ss_pred CChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEE
Q 025203 117 STIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLE 196 (256)
Q Consensus 117 dn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~li 196 (256)
||.||++.++||+++|++++|++|+.++++|++|++++++++|+++|++|+|+|||++.+|+.|.+||+++||++|++++
T Consensus 90 sN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~Li 169 (229)
T TIGR01675 90 SNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLI 169 (229)
T ss_pred cCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCCCCCCcEEEecCCCCCCC
Q 025203 197 LRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPKPKRTFKLPNSMYYLS 256 (256)
Q Consensus 197 lr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~g~r~fklPnp~Y~~~ 256 (256)
||+.++..+++..||+++|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus 170 LR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 170 LRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred ecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 999777777888999999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=3.3e-70 Score=479.32 Aligned_cols=215 Identities=35% Similarity=0.739 Sum_probs=203.6
Q ss_pred ccccccccceeeeeeecCccCccccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCcc
Q 025203 37 DSLKTYCESWRINVELNNIREFEVVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLL 116 (256)
Q Consensus 37 ~~~~~~c~s~~~~~e~nn~~~~~~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTll 116 (256)
.....||.|||++||+||+++|+|||++|++||++||+||||++|++++.++|..|+.++ .. ++++|||||||||+|
T Consensus 37 ~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~-~~--~~~dA~V~DIDET~L 113 (275)
T TIGR01680 37 RDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDL-EV--HEKDTFLFNIDGTAL 113 (275)
T ss_pred cCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-cC--CCCCEEEEECccccc
Confidence 456889999999999999999999999999999999999999999999999999999877 54 468999999999999
Q ss_pred CChHHHHHhccCCCCCCHHHHH-HHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceE
Q 025203 117 STIPYFKKHGFGGERLNASSWE-AWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASL 195 (256)
Q Consensus 117 dn~~~~~~~~~g~~~~~~~~~~-~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~l 195 (256)
||.||+..++||+++|+++.|+ +|+..+++|++|++++|+++++++|++|+|||||++.+|++|++||+++||++|+++
T Consensus 114 sN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~L 193 (275)
T TIGR01680 114 SNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKL 193 (275)
T ss_pred cCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCccee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-CCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCCCCC-CcEEEecCCCCC
Q 025203 196 ELRGLED-EYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPKP-KRTFKLPNSMYY 254 (256)
Q Consensus 196 ilr~~~~-~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~g-~r~fklPnp~Y~ 254 (256)
+||+.++ ..+++..||+..|++++++||+|+++|||||+||.|++.| .|+||||||||-
T Consensus 194 iLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 194 ILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred eecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCcccc
Confidence 9998754 5567889999999999999999999999999999999886 799999999774
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=1.1e-54 Score=378.28 Aligned_cols=214 Identities=38% Similarity=0.695 Sum_probs=184.2
Q ss_pred ccccccccceeeeeeecCccCccccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCcc
Q 025203 37 DSLKTYCESWRINVELNNIREFEVVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLL 116 (256)
Q Consensus 37 ~~~~~~c~s~~~~~e~nn~~~~~~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTll 116 (256)
.....+|.||+++||+|| .+|.+ ++|++++.. |+++||.+|+..++.+|..|+.+. ...+++++|||||||||+|
T Consensus 10 ~~~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~-~~~~~~~~avv~DIDeTvL 84 (229)
T PF03767_consen 10 STAALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSR-LDEADKPPAVVFDIDETVL 84 (229)
T ss_dssp --------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHH-HHHHTSEEEEEEESBTTTE
T ss_pred hHHHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-HhccCCCcEEEEECCcccc
Confidence 457889999999999999 99975 999999999 999999999999999999999988 5555889999999999999
Q ss_pred CChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEE
Q 025203 117 STIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLE 196 (256)
Q Consensus 117 dn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~li 196 (256)
||.+|+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|||||++.+|+.|++||+++||+.|++++
T Consensus 85 sn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~ 164 (229)
T PF03767_consen 85 SNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLI 164 (229)
T ss_dssp EHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGE
T ss_pred cCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC-CCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC----CCCCCcEEEecCCCCCC
Q 025203 197 LRGLED-EYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG----LPKPKRTFKLPNSMYYL 255 (256)
Q Consensus 197 lr~~~~-~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g----a~~g~r~fklPnp~Y~~ 255 (256)
|++..+ ..+++..||++.|+.+++.||+|+++||||++||.+ +..|.|+|+|||||||+
T Consensus 165 lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 165 LRPDKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp EEEESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred cccccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 999876 555778999999999999999999999999999999 55589999999999985
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=3.7e-40 Score=291.89 Aligned_cols=183 Identities=26% Similarity=0.406 Sum_probs=162.1
Q ss_pred hhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHh
Q 025203 64 ECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKE 143 (256)
Q Consensus 64 ~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~ 143 (256)
+-...|.||++|+||++++.|+++.|+.+++++.+...++++|||||||||+|||+||+..+.+++.+|+++.|++|+..
T Consensus 35 ~~~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~ 114 (266)
T TIGR01533 35 QNTMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQA 114 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHc
Confidence 44677999999999999999999999999998744445778999999999999999999998899999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc--ceEEEecCCCCCchhhhhhHHHHHHHHhc
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW--ASLELRGLEDEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~~K~~~r~~l~~~ 221 (256)
..++++||+.+++++|+++|++++|+|||++..++.|.++|+++|++.+ +++++++.. . .|+..|+.+. .
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-~------~K~~rr~~I~-~ 186 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-S------SKESRRQKVQ-K 186 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-C------CcHHHHHHHH-h
Confidence 9999999999999999999999999999999999999999999999865 578888532 2 3455666664 5
Q ss_pred CCcEEEEEcCCccccCCCC-------------------CCCcEEEecCCCCC
Q 025203 222 GYRIWGVVGDQWSSFEGLP-------------------KPKRTFKLPNSMYY 254 (256)
Q Consensus 222 g~~i~~~iGD~~sDl~ga~-------------------~g~r~fklPnp~Y~ 254 (256)
+|+|+++|||+++||.+.. +|.++|.||||||+
T Consensus 187 ~y~Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG 238 (266)
T TIGR01533 187 DYEIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG 238 (266)
T ss_pred cCCEEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence 8999999999999997631 68999999999996
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=253.75 Aligned_cols=182 Identities=26% Similarity=0.408 Sum_probs=159.3
Q ss_pred hHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhc
Q 025203 65 CIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKES 144 (256)
Q Consensus 65 c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~ 144 (256)
-...|.||+.|+||++...|+++.|+.-+++..++..++++|||+|||||+|||+||.......+.+|+|++|++||++.
T Consensus 40 ~~~~v~w~Q~s~E~~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~ 119 (274)
T COG2503 40 NTMSVNWYQQSAEYQALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAK 119 (274)
T ss_pred hhhhHHHhhhhHHHHHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhc
Confidence 34569999999999999999999999999954377777888999999999999999999888889999999999999999
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCccc-HHHHHHHHHhcCCCCc--ceEEEecCCCCCchhhhhhHHHHHHHHhc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESL-RSYTVDNLIHVGYHGW--ASLELRGLEDEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~-r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~~K~~~r~~l~~~ 221 (256)
.+.++||+.+|+++..++|.+|+|+|||.... ...|+++|++.|+++. .++++..+. + .| +.|++..+.
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~-k------~K-e~R~~~v~k 191 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDK-K------SK-EVRRQAVEK 191 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCC-C------cH-HHHHHHHhh
Confidence 99999999999999999999999999999766 8899999999999986 466766322 1 23 345555567
Q ss_pred CCcEEEEEcCCccccCCCC------------------CCCcEEEecCCCCC
Q 025203 222 GYRIWGVVGDQWSSFEGLP------------------KPKRTFKLPNSMYY 254 (256)
Q Consensus 222 g~~i~~~iGD~~sDl~ga~------------------~g~r~fklPnp~Y~ 254 (256)
+|.|++.|||++.||.... +|.++|.||||||.
T Consensus 192 ~~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG 242 (274)
T COG2503 192 DYKIVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYG 242 (274)
T ss_pred ccceeeEecCchhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccC
Confidence 9999999999999997642 79999999999996
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.89 E-value=7.3e-23 Score=178.90 Aligned_cols=144 Identities=22% Similarity=0.242 Sum_probs=105.8
Q ss_pred CCCCcEEEEecCCCccCChHH--HHHhccC--CCCC--CHHHHHHHHHh--cCCcchHHHHHHHHHHHHcCCeEEEEeCC
Q 025203 101 GDGKDAWIFDVDDTLLSTIPY--FKKHGFG--GERL--NASSWEAWMKE--SKAPALEHTLNLFHEIKNRGVKIFLVSSR 172 (256)
Q Consensus 101 ~~~~~avvfDiDgTlldn~~~--~~~~~~g--~~~~--~~~~~~~wv~~--~~~~~~pg~~ell~~L~~~G~~i~ivTnR 172 (256)
+.+|.+|+||||||+|||+|| +..+.|+ ...| +.+.|+.|.+. ..+.++||++++|++|+++|++|+|||||
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444559999999999999885 4444553 3456 34455555543 45778899999999999999999999999
Q ss_pred CcccHHHHHHHHHh-cCC--CCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCC-CCCCc---E
Q 025203 173 RESLRSYTVDNLIH-VGY--HGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL-PKPKR---T 245 (256)
Q Consensus 173 ~~~~r~~T~~~L~~-~G~--~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga-~~g~r---~ 245 (256)
++..++.|.++|.+ +|+ ..++.+++.++.. .|+.+ +..+++ +.++++|||+++|++++ .+|.+ +
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~-~K~~K------~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKP-GQYTK------TQWLKK--KNIRIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCC-CCCCH------HHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEE
Confidence 98878889999886 999 4566777776542 33322 234444 34688999999999987 35554 5
Q ss_pred EEecCCCC
Q 025203 246 FKLPNSMY 253 (256)
Q Consensus 246 fklPnp~Y 253 (256)
+.-||++|
T Consensus 211 ~~G~~~~~ 218 (237)
T PRK11009 211 LRAANSTY 218 (237)
T ss_pred ecCCCCCC
Confidence 56699998
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.82 E-value=1.5e-19 Score=158.11 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=102.2
Q ss_pred CCCCCcEEEEecCCCccCChHHHHHhccCCCCCC---------HHHHHHHHHhcCC--cchHHHHHHHHHHHHcCCeEEE
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLN---------ASSWEAWMKESKA--PALEHTLNLFHEIKNRGVKIFL 168 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~---------~~~~~~wv~~~~~--~~~pg~~ell~~L~~~G~~i~i 168 (256)
++.+|.+|+|||||||+||+|++ . +|-..++ +..|+.|...... .+.+++.++|++++++|++++|
T Consensus 59 ~~~~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~i 135 (237)
T TIGR01672 59 EGRPPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFF 135 (237)
T ss_pred CCCCCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEE
Confidence 44455699999999999999987 2 3433333 3678999876544 5666699999999999999999
Q ss_pred EeCCCcccHHHHHHHHH-hcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCC-CCCCcE
Q 025203 169 VSSRRESLRSYTVDNLI-HVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL-PKPKRT 245 (256)
Q Consensus 169 vTnR~~~~r~~T~~~L~-~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga-~~g~r~ 245 (256)
||||.+..++.+.++|. ++|++.++..++.++. ...||++ +..+++ +.++++|||+.+||.++ .+|.++
T Consensus 136 VTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~------~~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 136 VTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTK------TQWIQD--KNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred EeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCH------HHHHHh--CCCeEEEeCCHHHHHHHHHCCCCE
Confidence 99997654455566654 6999988888877654 2334432 123443 44689999999999887 578888
Q ss_pred EEe
Q 025203 246 FKL 248 (256)
Q Consensus 246 fkl 248 (256)
+.+
T Consensus 208 I~V 210 (237)
T TIGR01672 208 IRI 210 (237)
T ss_pred EEE
Confidence 776
No 8
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.64 E-value=1.4e-15 Score=131.45 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=101.4
Q ss_pred CcEEEEecCCCccCChHHHHHh------ccCCCCCCH----------------------------HHHHHHHH----h--
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKH------GFGGERLNA----------------------------SSWEAWMK----E-- 143 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~------~~g~~~~~~----------------------------~~~~~wv~----~-- 143 (256)
.++|+||+||||+|+.+.+... .+|-.+.+. +.+..|.. .
T Consensus 4 ~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (220)
T COG0546 4 IKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTAYA 83 (220)
T ss_pred CCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 5799999999999999876652 122111110 11222211 0
Q ss_pred cC--CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEe-cCCCCCchhhhhhHHHHHHHHh
Q 025203 144 SK--APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELR-GLEDEYKKVQQYKAQVRKRLVK 220 (256)
Q Consensus 144 ~~--~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr-~~~~~~kp~~~~K~~~r~~l~~ 220 (256)
.. ..++||+.++|..|+++|++++++||+++.. +...|+++|+..++..+.+ ......||+|.. +...+.+
T Consensus 84 ~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~---~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~---l~~~~~~ 157 (220)
T COG0546 84 ELLESRLFPGVKELLAALKSAGYKLGIVTNKPERE---LDILLKALGLADYFDVIVGGDDVPPPKPDPEP---LLLLLEK 157 (220)
T ss_pred hhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHH---HHHHHHHhCCccccceEEcCCCCCCCCcCHHH---HHHHHHH
Confidence 12 5799999999999999999999999998765 7788888999999888887 344667787743 4455555
Q ss_pred cCCc--EEEEEcCCccccCCCC-CCCcEEEec
Q 025203 221 EGYR--IWGVVGDQWSSFEGLP-KPKRTFKLP 249 (256)
Q Consensus 221 ~g~~--i~~~iGD~~sDl~ga~-~g~r~fklP 249 (256)
.|.+ .+++|||+..|+++|+ +|..++-+-
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~ 189 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAKAAGVPAVGVT 189 (220)
T ss_pred hCCChhheEEECCCHHHHHHHHHcCCCEEEEE
Confidence 6666 6899999999999984 677766553
No 9
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.61 E-value=3.1e-15 Score=129.76 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
...++||+.++|+.|+++|++++++||.+... ....|+++|+..++..++.++ ....||++... ...+++.|.
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~---~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~---~~~~~~~~~ 164 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAHPHN---LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLW---QAVAEHTGL 164 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH---HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHH---HHHHHHcCC
Confidence 36789999999999999999999999976433 455678889877765555544 35578877433 334445555
Q ss_pred c--EEEEEcCCccccCCC-CCCCcE-EEecCCC
Q 025203 224 R--IWGVVGDQWSSFEGL-PKPKRT-FKLPNSM 252 (256)
Q Consensus 224 ~--i~~~iGD~~sDl~ga-~~g~r~-fklPnp~ 252 (256)
. .+++|||+.+|+++| .+|.++ +.++||-
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 4 499999999999988 478885 6677763
No 10
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.60 E-value=9.5e-15 Score=126.87 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=98.2
Q ss_pred CcEEEEecCCCccCChHHHHHh------ccCCCCCC------------------------H-------HHHHHHHHh---
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKH------GFGGERLN------------------------A-------SSWEAWMKE--- 143 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~------~~g~~~~~------------------------~-------~~~~~wv~~--- 143 (256)
+++||||+||||+|+.+.+... .+|...++ . +.|.+.+..
T Consensus 12 ~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (229)
T PRK13226 12 PRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEALIG 91 (229)
T ss_pred CCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999998776542 13322111 0 011111111
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g 222 (256)
...+++||+.++++.|+++|++++++||++.. .....|+++|+..++..+...+. ...||++... .+.+++.|
T Consensus 92 ~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~---~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~---~~~~~~l~ 165 (229)
T PRK13226 92 TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEY---LARLILPQLGWEQRCAVLIGGDTLAERKPHPLPL---LVAAERIG 165 (229)
T ss_pred hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHH---HHHHHHHHcCchhcccEEEecCcCCCCCCCHHHH---HHHHHHhC
Confidence 34688999999999999999999999998753 35667888999877777666553 4568877543 33444445
Q ss_pred C--cEEEEEcCCccccCCC-CCCCcEEEe
Q 025203 223 Y--RIWGVVGDQWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 223 ~--~i~~~iGD~~sDl~ga-~~g~r~fkl 248 (256)
. +.+++|||+.+|+.++ .+|.+++.+
T Consensus 166 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 166 VAPTDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 3 4599999999999988 478888766
No 11
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=9.7e-15 Score=128.41 Aligned_cols=101 Identities=17% Similarity=0.048 Sum_probs=79.1
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g 222 (256)
...+++||+.++|++|+++|++++++||++... +...|+++|+..|+..++.+++ ...||++... .+.++..|
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~---~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~---~~a~~~~~ 178 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN---AELMISLLGLSDFFQAVIIGSECEHAKPHPDPY---LKALEVLK 178 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH---HHHHHHHcCChhhCcEEEecCcCCCCCCChHHH---HHHHHHhC
Confidence 357899999999999999999999999997543 6788899999888776666554 5678887443 34444445
Q ss_pred C--cEEEEEcCCccccCCC-CCCCcEEEecC
Q 025203 223 Y--RIWGVVGDQWSSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 223 ~--~i~~~iGD~~sDl~ga-~~g~r~fklPn 250 (256)
. +.+++|||+..|+++| .+|.+++.+.+
T Consensus 179 ~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 179 VSKDHTFVFEDSVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CChhHEEEEcCCHHHHHHHHHCCCEEEEEeC
Confidence 4 4599999999999988 47999887743
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.59 E-value=1.2e-14 Score=125.05 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=95.4
Q ss_pred CcEEEEecCCCccCChHHHHHh------ccC-----------CC-----------CCCH----HHHHHHH---H--hcCC
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKH------GFG-----------GE-----------RLNA----SSWEAWM---K--ESKA 146 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~------~~g-----------~~-----------~~~~----~~~~~wv---~--~~~~ 146 (256)
.++||||+||||+|+.+.+... .+| +. ..+. +.|.++. . ....
T Consensus 3 ~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (218)
T PRK11587 3 CKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIEATDTEGI 82 (218)
T ss_pred CCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhcCc
Confidence 5799999999999998766331 112 10 0111 1222211 1 2456
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC--c
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--R 224 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~ 224 (256)
+++||+.++|+.|+++|++++++||++... +...++..|+..++.++..++....||++... ...++..|. +
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~---~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~---~~~~~~~g~~p~ 156 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPV---ASARHKAAGLPAPEVFVTAERVKRGKPEPDAY---LLGAQLLGLAPQ 156 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchH---HHHHHHhcCCCCccEEEEHHHhcCCCCCcHHH---HHHHHHcCCCcc
Confidence 899999999999999999999999987543 46667778886444433333334567777432 344444554 5
Q ss_pred EEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 225 IWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 225 i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
.+++|||+..|+++| .+|.+++.+.++
T Consensus 157 ~~l~igDs~~di~aA~~aG~~~i~v~~~ 184 (218)
T PRK11587 157 ECVVVEDAPAGVLSGLAAGCHVIAVNAP 184 (218)
T ss_pred cEEEEecchhhhHHHHHCCCEEEEECCC
Confidence 699999999999988 478888888643
No 13
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.59 E-value=1.1e-14 Score=124.70 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=97.8
Q ss_pred CcEEEEecCCCccCChHHHHHhc------cCCCC--------------------CCHHHHHHH-------HH---hcCCc
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHG------FGGER--------------------LNASSWEAW-------MK---ESKAP 147 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~------~g~~~--------------------~~~~~~~~w-------v~---~~~~~ 147 (256)
.++|+||+||||+|+.+.+.... ++... +++..+.+. .. ....+
T Consensus 3 ~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (214)
T PRK13288 3 INTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELVT 82 (214)
T ss_pred ccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999987654321 22111 111112111 11 13467
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC--c
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY--R 224 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~--~ 224 (256)
++||+.++|+.|+++|++++++||+.+. .+...|+..|+..++..++..++ ...||++... .+.+.+.|. .
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~---~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~---~~~~~~~~~~~~ 156 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRD---TVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPV---LKALELLGAKPE 156 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCChhceeEEEecCcCCCCCCCcHHH---HHHHHHcCCCHH
Confidence 8999999999999999999999999754 36778899999988777776654 4567766433 344444454 3
Q ss_pred EEEEEcCCccccCCC-CCCCcEEEec
Q 025203 225 IWGVVGDQWSSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 225 i~~~iGD~~sDl~ga-~~g~r~fklP 249 (256)
.+++|||+.+|++++ .+|.+++.+.
T Consensus 157 ~~~~iGDs~~Di~aa~~aG~~~i~v~ 182 (214)
T PRK13288 157 EALMVGDNHHDILAGKNAGTKTAGVA 182 (214)
T ss_pred HEEEECCCHHHHHHHHHCCCeEEEEc
Confidence 589999999999998 4788877663
No 14
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.58 E-value=1.4e-14 Score=128.50 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=79.4
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g 222 (256)
...+++||+.++|+.|+++|++++++||++... +...|+++|+..++..++.+++ ...||++... ...+++.|
T Consensus 106 ~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~---~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~---~~a~~~l~ 179 (260)
T PLN03243 106 GLYRLRPGSREFVQALKKHEIPIAVASTRPRRY---LERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMF---MYAAERLG 179 (260)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH---HHHHHHHcCCHhhCcEEEecccCCCCCCCHHHH---HHHHHHhC
Confidence 356789999999999999999999999997543 6778888999887766666654 4578887433 34455556
Q ss_pred Cc--EEEEEcCCccccCCCC-CCCcEEEecC
Q 025203 223 YR--IWGVVGDQWSSFEGLP-KPKRTFKLPN 250 (256)
Q Consensus 223 ~~--i~~~iGD~~sDl~ga~-~g~r~fklPn 250 (256)
.. .+++|||+.+|+++|. +|.+++.+.+
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 54 4999999999999984 7999988864
No 15
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=125.42 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=104.7
Q ss_pred CcEEEEecCCCccCChHHHHHhc------cCCC----------------------------C-CCHHHHHHHH------H
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHG------FGGE----------------------------R-LNASSWEAWM------K 142 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~------~g~~----------------------------~-~~~~~~~~wv------~ 142 (256)
.+|+|||+||||+|+.+.+.+.+ +|.. . .....-..+. .
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 57999999999999988876642 2211 0 1111111111 1
Q ss_pred hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhc
Q 025203 143 ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 143 ~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~ 221 (256)
....+++||+.++++.|+++|++++++|+.+. ..+...|..+|+..++..++.+ +..++||+|... +.+.+..
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~---~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~y---L~Aa~~L 155 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPR---RAAERVLARLGLLDYFDVIVTADDVARGKPAPDIY---LLAAERL 155 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChH---HHHHHHHHHccChhhcchhccHHHHhcCCCCCHHH---HHHHHHc
Confidence 24579999999999999999999999999864 3478889999988887665554 446778988433 4555665
Q ss_pred CCc--EEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 222 GYR--IWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 222 g~~--i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
|.. .|+.|+|++.+++++ .+|+++|.+|++
T Consensus 156 gv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 156 GVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred CCChHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 654 599999999999998 489999999984
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.56 E-value=1.9e-14 Score=133.52 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=79.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
...++||+.++|+.|+++|++++++||++.. .+...|+++|+..|+..++..++ ...||++... ...++..|.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~---~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peif---l~A~~~lgl 287 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRK---TLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMF---IYAAQLLNF 287 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHH---HHHHHHcCC
Confidence 4678999999999999999999999999754 47788899999888777776655 4568877443 334444554
Q ss_pred --cEEEEEcCCccccCCCC-CCCcEEEecC
Q 025203 224 --RIWGVVGDQWSSFEGLP-KPKRTFKLPN 250 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga~-~g~r~fklPn 250 (256)
..+++|||+.+|+++|+ +|.+++-+.+
T Consensus 288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 288 IPERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 45999999999999984 7999988864
No 17
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.56 E-value=1.8e-14 Score=123.60 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC--CcceEEEecCC-CCCchhhhhhHHHHHHHHhc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH--GWASLELRGLE-DEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~--~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~ 221 (256)
..+++||+.++++.|+++|++++++||+.... ....|+++|+. .++..+...++ ...||++... ...+++.
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~---~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~---~~a~~~~ 158 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDT---AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLI---LRAMELT 158 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHH---HHHHHHc
Confidence 45899999999999999999999999998654 56777888887 66665655544 4567877433 3444555
Q ss_pred CC---cEEEEEcCCccccCCC-CCCCcE-EEecC
Q 025203 222 GY---RIWGVVGDQWSSFEGL-PKPKRT-FKLPN 250 (256)
Q Consensus 222 g~---~i~~~iGD~~sDl~ga-~~g~r~-fklPn 250 (256)
|. +.+++|||+++|++++ .+|.++ +.++.
T Consensus 159 ~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 159 GVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred CCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 54 4599999999999998 589998 77754
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.56 E-value=8.8e-15 Score=128.56 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=78.1
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEecCC-CCCchhhhhhHHHHHHHHhc
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA-SLELRGLE-DEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~~K~~~r~~l~~~ 221 (256)
....++||+.++|+.|+++|++++++||++... +...|+++|+..++ ..++.+++ ...||++... .+.+++.
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~---~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~---~~a~~~l 169 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTREM---MDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMA---LKNAIEL 169 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcHHH---HHHHHHHHHhcCCCCceEEccccCCCCCCCHHHH---HHHHHHc
Confidence 356899999999999999999999999997544 56777888887763 55555543 4678877433 3445555
Q ss_pred CC---cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 222 GY---RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 222 g~---~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
|. ..+++|||+++|+++| .+|.+++.++..
T Consensus 170 ~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 170 GVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred CCCCchheEEECCcHHHHHHHHHCCCeEEEEecC
Confidence 54 3499999999999998 589999988653
No 19
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.55 E-value=5e-14 Score=117.25 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCCc
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++||+.++|+.|+++|++++++||+.. ....|++.|+..+++.++.+++ ...||++... .+.++..|..
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~---~~~~~~~~~~ 157 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIF---LAAAEGLGVS 157 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc-----HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHH---HHHHHHcCCC
Confidence 47899999999999999999999999643 2356888898877666665543 4567776433 3444445543
Q ss_pred --EEEEEcCCccccCCCC-CCCcEEEe
Q 025203 225 --IWGVVGDQWSSFEGLP-KPKRTFKL 248 (256)
Q Consensus 225 --i~~~iGD~~sDl~ga~-~g~r~fkl 248 (256)
.+++|||+.+|+++|. +|.+++-+
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 4899999999999984 78888865
No 20
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.55 E-value=3.9e-14 Score=120.58 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++|+.|+++|++++++||.+.. .....|++.|+..++..+...++ ...||++.. ..+.+++.|.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~---~~~~~~~~~~ 156 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTP---LARPLLELLGLAKYFSVLIGGDSLAQRKPHPDP---LLLAAERLGV 156 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCcHhhCcEEEecCCCCCCCCChHH---HHHHHHHcCC
Confidence 4678999999999999999999999998654 36788888999877766666543 456777643 3344455554
Q ss_pred --cEEEEEcCCccccCCC-CCCCcEEEec
Q 025203 224 --RIWGVVGDQWSSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga-~~g~r~fklP 249 (256)
+.+++|||+.+|+.++ .+|.+++.+.
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 4599999999999988 4788888764
No 21
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.54 E-value=4e-14 Score=121.33 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++|++|+++|++++++||.+... ....|++.|+..++..++.+ +....||++... ...+++.|.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~---~~~~~~~~~ 165 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVK---QWEKLERLGVRDFFDAVITSEEEGVEKPHPKIF---YAALKRLGV 165 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHhCChHHhccEEEEeccCCCCCCCHHHH---HHHHHHcCC
Confidence 35789999999999999999999999997543 56778889998776555544 445567877433 344445555
Q ss_pred --cEEEEEcCCc-cccCCCC-CCCcEEEecCCC
Q 025203 224 --RIWGVVGDQW-SSFEGLP-KPKRTFKLPNSM 252 (256)
Q Consensus 224 --~i~~~iGD~~-sDl~ga~-~g~r~fklPnp~ 252 (256)
..+++|||++ +|+.+|. +|.+++-++.+.
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence 3589999998 8999984 899998887653
No 22
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.54 E-value=1.1e-13 Score=119.21 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=80.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++++.|+++|++++++||.... .+...++..|+..++..++..+. ...||++. ..+..++..|.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~---~~~~~~~~~~~ 163 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLH---MLEAVLTMFDLRDYFDALASAEKLPYSKPHPE---VYLNCAAKLGV 163 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHhCcchhcccEEEEcccCCCCCCCHH---HHHHHHHHcCC
Confidence 4689999999999999999999999998654 36778888999888766666543 45677663 33455555665
Q ss_pred --cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 224 --RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
..+++|||+.+|+.++ .+|.+++.+|+|
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 4599999999999998 589999999876
No 23
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.54 E-value=6.6e-14 Score=118.36 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=76.8
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhhHHHHHHHHhcC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~l~~~g 222 (256)
...+++||+.++|+.|+++|++++++||.+... ....|++.|+..++..++.++ ....||++.... ..+++.|
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~---~~~~~~~ 162 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSPAM---LKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQ---LALEALG 162 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHCCChhhhheeEehhhcCCCCCCHHHHH---HHHHHhC
Confidence 356789999999999999999999999987543 567788899877665555544 355678774433 3333344
Q ss_pred C--cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 223 Y--RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 223 ~--~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
. +.+++|||+..|+.++ .+|.+++.+..+
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 3 4589999999999998 589999887543
No 24
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.53 E-value=6.7e-14 Score=119.05 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=74.9
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g 222 (256)
...+++||+.++|++|+++|++++++||++... +...|+..|+..++..+...++ ...||.+... .+.+++.|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~---~~~~~~~~ 145 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPR---ARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIV---REALRLLD 145 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHHHcCChhheeeEEecCcCCCCCCChHHH---HHHHHHcC
Confidence 357889999999999999999999999987543 6677889999877665555543 4467766333 34444555
Q ss_pred C--cEEEEEcCCccccCCC-CCCCcEEEe
Q 025203 223 Y--RIWGVVGDQWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 223 ~--~i~~~iGD~~sDl~ga-~~g~r~fkl 248 (256)
. ..+++|||+.+|+.++ .+|.+++.+
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 4 4599999999999987 478887765
No 25
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.53 E-value=7.1e-14 Score=124.93 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=97.3
Q ss_pred CCCcEEEEecCCCccCChHHHHHh------ccCCCCC----------------------CHHH-------HHHHHHh--c
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKH------GFGGERL----------------------NASS-------WEAWMKE--S 144 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~------~~g~~~~----------------------~~~~-------~~~wv~~--~ 144 (256)
+..+++|||+||||+|+.+.+... .+|.+.. +... +.+.... .
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 347799999999999998766442 1232111 1111 1111111 3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC-
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY- 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~- 223 (256)
..+++||+.++|+.|+++|++++++||.... .+...|++.|+..++..+...+....|+ ....+.+++.+.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~---~~~~~L~~~gl~~~F~~vi~~~~~~~k~-----~~~~~~l~~~~~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQ---NIEAFLQRQGLRSLFSVVQAGTPILSKR-----RALSQLVAREGWQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCChhheEEEEecCCCCCCH-----HHHHHHHHHhCcC
Confidence 4678999999999999999999999999754 3678889999988877666554433333 223344444443
Q ss_pred -cEEEEEcCCccccCCC-CCCCcEEEecC
Q 025203 224 -RIWGVVGDQWSSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 224 -~i~~~iGD~~sDl~ga-~~g~r~fklPn 250 (256)
+.+++|||+.+|++++ .+|.+++.++.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTW 240 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 4599999999999998 47999887754
No 26
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.51 E-value=2e-13 Score=121.87 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=99.5
Q ss_pred CCCCcEEEEecCCCccCChHHHHHhc------cCCC------------------------------CCCHH-------HH
Q 025203 101 GDGKDAWIFDVDDTLLSTIPYFKKHG------FGGE------------------------------RLNAS-------SW 137 (256)
Q Consensus 101 ~~~~~avvfDiDgTlldn~~~~~~~~------~g~~------------------------------~~~~~-------~~ 137 (256)
+.-+++||||+||||+|+.+.+.... +|.+ ..+++ .|
T Consensus 10 ~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (272)
T PRK13223 10 GRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALF 89 (272)
T ss_pred CccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 44578999999999999977665421 2211 01111 12
Q ss_pred HHHHHh--cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHH
Q 025203 138 EAWMKE--SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQV 214 (256)
Q Consensus 138 ~~wv~~--~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~ 214 (256)
.+++.. ...+++||+.++++.|+++|++++++||.++.. ....|.++|+..++..+...+. ...||++.. .
T Consensus 90 ~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~---~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~---~ 163 (272)
T PRK13223 90 MEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERF---VAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAA---L 163 (272)
T ss_pred HHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHH---HHHHHHHcCcHhhCeEEEecCCCCCCCCCcHH---H
Confidence 233322 235689999999999999999999999987643 5677788898877766666554 345676633 2
Q ss_pred HHHHHhcCCc--EEEEEcCCccccCCC-CCCCcEEEecC
Q 025203 215 RKRLVKEGYR--IWGVVGDQWSSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 215 r~~l~~~g~~--i~~~iGD~~sDl~ga-~~g~r~fklPn 250 (256)
...++..|.+ .+++|||+.+|++++ .+|.+++-+++
T Consensus 164 ~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 164 LFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred HHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 3344445543 599999999999987 47888888765
No 27
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.51 E-value=2.5e-13 Score=122.06 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=99.8
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
.++++++||+|||+.++... .+| +|.......++|++.++++.|+++|++++++|||++..+..+.
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~--------~~~------~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l 221 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGR--------SPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV 221 (300)
T ss_pred CCCCEEEEECCCcCcCCCCC--------Ccc------chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH
Confidence 45689999999999997631 223 3555567899999999999999999999999999999888889
Q ss_pred HHHHhcCCCCcce--------EEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCC-CCCCcEEEec
Q 025203 182 DNLIHVGYHGWAS--------LELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 182 ~~L~~~G~~~~~~--------lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga-~~g~r~fklP 249 (256)
++|...|+. ++. ++||+. ..+||++..+....+.+....++.+++|||+.+|+.++ .+|..++.+.
T Consensus 222 ~~l~~~~~~-f~~i~~~~~~~~~~~~~-~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 222 EWLRQTDIW-FDDLIGRPPDMHFQREQ-GDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred HHHHHcCCc-hhhhhCCcchhhhcccC-CCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 998877632 222 233333 24578887665554444333568899999999999987 4788888774
No 28
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.51 E-value=1.7e-13 Score=114.05 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=72.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
...++||+.++++.|+++|++++++||+ . .....|+..|+..+++.++..+. ...||.+.. ..+.+++.|.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~----~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~---~~~~~~~~~~ 157 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-K----NADRILAKLGLTDYFDAIVDADEVKEGKPHPET---FLLAAELLGV 157 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-h----hHHHHHHHcChHHHCCEeeehhhCCCCCCChHH---HHHHHHHcCC
Confidence 4689999999999999999999999998 2 25677888999877666665543 446676633 2344455555
Q ss_pred --cEEEEEcCCccccCCCC-CCCcEEE
Q 025203 224 --RIWGVVGDQWSSFEGLP-KPKRTFK 247 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga~-~g~r~fk 247 (256)
.-+++|||+..|+.+|. +|.+++-
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence 34889999999999984 7887764
No 29
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.50 E-value=6e-14 Score=113.91 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=88.0
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc--------
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL-------- 176 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~-------- 176 (256)
++++||+||||.++...+ | ...|.+ ..++||+.++++.|+++|++++++||.+...
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 479999999999987421 1 112433 3689999999999999999999999987411
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEe----cC-CCCCchhhhhhHHHHHHHHhcCCc--EEEEEcCCccccCCC-CCCCc
Q 025203 177 ----RSYTVDNLIHVGYHGWASLELR----GL-EDEYKKVQQYKAQVRKRLVKEGYR--IWGVVGDQWSSFEGL-PKPKR 244 (256)
Q Consensus 177 ----r~~T~~~L~~~G~~~~~~lilr----~~-~~~~kp~~~~K~~~r~~l~~~g~~--i~~~iGD~~sDl~ga-~~g~r 244 (256)
...+...|++.|+.. +..+.. .+ ....||.+.... ..+++.|.+ .+++|||+..|+++| .+|.+
T Consensus 65 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~~~~---~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPGLIL---EALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHHHHH---HHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 134566788888862 222332 12 223577664433 333444544 599999999999998 58999
Q ss_pred EEEecC
Q 025203 245 TFKLPN 250 (256)
Q Consensus 245 ~fklPn 250 (256)
++.+|.
T Consensus 141 ~v~i~~ 146 (147)
T TIGR01656 141 AVLLVD 146 (147)
T ss_pred EEEecC
Confidence 999885
No 30
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.49 E-value=1.6e-13 Score=130.87 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=76.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..+++||+.++|++|+++|++++++||++... +.+.|+++|+..|+..++..++...+|.|. .....+++.+.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~---~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~---~~~~al~~l~~~ 401 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY---LRAIVSYYDLDQWVTETFSIEQINSLNKSD---LVKSILNKYDIK 401 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHHHCCcHhhcceeEecCCCCCCCCcH---HHHHHHHhcCcc
Confidence 46889999999999999999999999987544 678889999988877777765533223232 123344445667
Q ss_pred EEEEEcCCccccCCC-CCCCcEEEecC
Q 025203 225 IWGVVGDQWSSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 225 i~~~iGD~~sDl~ga-~~g~r~fklPn 250 (256)
.+++|||+.+|+.++ .+|.+++.++.
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGLIAIGCNF 428 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence 799999999999988 48899888754
No 31
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.49 E-value=1.2e-13 Score=116.87 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=65.8
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc--
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR-- 224 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~-- 224 (256)
.+.+++.++|+.|+++|++++++||++.. .+...|+..|+..++..++..++...||++.... ..+++.|.+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~---~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~---~~~~~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK---DAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLI---LAAKALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHH---HHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHH---HHHHHhCcCcc
Confidence 34455699999999999999999999754 3678889999988877666665533488774432 333444543
Q ss_pred EEEEEcCCccccCCCC
Q 025203 225 IWGVVGDQWSSFEGLP 240 (256)
Q Consensus 225 i~~~iGD~~sDl~ga~ 240 (256)
.+++|||+.+|+.+|+
T Consensus 180 ~~i~vGD~~~Di~aA~ 195 (197)
T TIGR01548 180 HAAMVGDTVDDIITGR 195 (197)
T ss_pred cEEEEeCCHHHHHHHH
Confidence 5899999999998875
No 32
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=3.1e-13 Score=121.49 Aligned_cols=100 Identities=15% Similarity=0.018 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcC---CCCcceEEEecCCCCCchhhhhhHHHHHHHHhcC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVG---YHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G---~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g 222 (256)
.+++||+.++|++|+++|++++++||.+... ....|+..+ +..++..+...+....||++.... ..++..|
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~---~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~---~a~~~~~ 216 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKA---VSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYN---LAAETLG 216 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHhccccccCceEEEeccccCCCCCCHHHHH---HHHHHhC
Confidence 5799999999999999999999999987544 344444442 222334443333345688774433 3334445
Q ss_pred Cc--EEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 223 YR--IWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 223 ~~--i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
.+ .+++|||+++|+++| .+|.+++.+++.
T Consensus 217 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 217 VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred cChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 44 499999999999998 479999988764
No 33
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.48 E-value=1.3e-13 Score=122.30 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=74.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc-ceEEEecC-CCCCchhhhhhHHHHHHHHhcC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW-ASLELRGL-EDEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~-~~lilr~~-~~~~kp~~~~K~~~r~~l~~~g 222 (256)
...++||+.++|+.|+++|++++++||.+... +...|+.+|+..+ +..++..+ ....||++.. ....+++.|
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~---~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~---~~~a~~~l~ 172 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREM---MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWM---ALKNAIELG 172 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHH---HHHHHHHcC
Confidence 46889999999999999999999999987644 5566666666554 35555544 3456787743 334455555
Q ss_pred C---cEEEEEcCCccccCCC-CCCCcEEEecC
Q 025203 223 Y---RIWGVVGDQWSSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 223 ~---~i~~~iGD~~sDl~ga-~~g~r~fklPn 250 (256)
. +.+++|||+++|+++| .+|.+++-+..
T Consensus 173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred CCCCcceEEEcCcHHHHHHHHHCCCEEEEEcc
Confidence 4 4599999999999998 47998887753
No 34
>PLN02940 riboflavin kinase
Probab=99.47 E-value=2.9e-13 Score=126.36 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=100.2
Q ss_pred CCCcEEEEecCCCccCChHHHHHh------ccCCC---------------------------CCCHHH----HHHHHH--
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKH------GFGGE---------------------------RLNASS----WEAWMK-- 142 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~------~~g~~---------------------------~~~~~~----~~~wv~-- 142 (256)
+..++||||+||||+|+.+.+... .+|.. +.+.+. +.+...
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999998766432 12210 001111 111111
Q ss_pred hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH-hcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHh
Q 025203 143 ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI-HVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVK 220 (256)
Q Consensus 143 ~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~-~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~ 220 (256)
.....++||+.++|+.|+++|++++++||++... +...|+ ..|+..++..++.+++ ...||++... ...++.
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~---~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~---~~a~~~ 162 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRAN---IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIF---LEAAKR 162 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH---HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHH---HHHHHH
Confidence 1346789999999999999999999999997543 456666 6788777777776654 4568877443 344444
Q ss_pred cCC--cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 221 EGY--RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 221 ~g~--~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
.|. ..+++|||+.+|+++| .+|.+++.++..
T Consensus 163 lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g 196 (382)
T PLN02940 163 LNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSI 196 (382)
T ss_pred cCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCC
Confidence 453 4599999999999988 589999988753
No 35
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.47 E-value=1.3e-13 Score=109.33 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc-----HHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL-----RSY 179 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~-----r~~ 179 (256)
++++||+||||+++.++.. .| ....++|++.+++++|+++|++++++||++... .+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~------------~~------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVD------------DE------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCCC------------CH------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 5899999999997532210 12 125789999999999999999999999998332 334
Q ss_pred HHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcC-CccccCCC-CCCCcEEEe
Q 025203 180 TVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGD-QWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 180 T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD-~~sDl~ga-~~g~r~fkl 248 (256)
+.+.|+.+|+. ++..+... ...||.+.......+.+.....+.+++||| ...|+.+| .+|.+++-+
T Consensus 63 ~~~~l~~~~l~-~~~~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 63 VARRLEELGVP-IDVLYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred HHHHHHHCCCC-EEEEEECC--CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 67788888886 33333333 345666643333333221122356999999 69999998 478888765
No 36
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.46 E-value=5.9e-13 Score=111.31 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++|+ .++|..|+++ ++++++||.++.. ....|+++|+..++..++..++ ...||++.... ..+++.|.
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~---~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~---~~~~~~~~ 157 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAI---AEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFL---RCAQLMGV 157 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCchHH---HHHHHHhCCcHhHceEEEehhhccCCCCChHHHH---HHHHHcCC
Confidence 4567886 6999999875 8999999987544 5778899999888777766654 56788875433 33444454
Q ss_pred c--EEEEEcCCccccCCC-CCCCcEEEec
Q 025203 224 R--IWGVVGDQWSSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 224 ~--i~~~iGD~~sDl~ga-~~g~r~fklP 249 (256)
. .+++|||+.+|+++| .+|.+++.+.
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 3 489999999999998 4799988764
No 37
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.46 E-value=7.7e-13 Score=113.48 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
...++||+.++++.|+++|++++++||..... ....|+++|+..++..++..+. ...||.+.. .+..++..+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~---~~~~~~~~~~ 164 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPF---VAPLLEALGIADYFSVVIGGDSLPNKKPDPAP---LLLACEKLGL 164 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHcCCccCccEEEcCCCCCCCCcChHH---HHHHHHHcCC
Confidence 46799999999999999999999999997543 4677788899877766666554 345665532 3334444444
Q ss_pred --cEEEEEcCCccccCCCC-CCCcEEEecC
Q 025203 224 --RIWGVVGDQWSSFEGLP-KPKRTFKLPN 250 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga~-~g~r~fklPn 250 (256)
+.+++|||+.+|+.++. +|.+++.++.
T Consensus 165 ~~~~~i~igD~~~Di~~a~~~g~~~i~v~~ 194 (226)
T PRK13222 165 DPEEMLFVGDSRNDIQAARAAGCPSVGVTY 194 (226)
T ss_pred ChhheEEECCCHHHHHHHHHCCCcEEEECc
Confidence 45899999999999874 7888877753
No 38
>PRK09449 dUMP phosphatase; Provisional
Probab=99.44 E-value=6.4e-13 Score=114.29 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=74.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++|+.|+ +|++++++||.+.. .+...|++.|+..++..++.++ ....||++... ...+++.|.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~---~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~---~~~~~~~~~ 165 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTE---LQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIF---DYALEQMGN 165 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHH---HHHHHHHhCChHHHcCEEEEECccCCCCCCHHHH---HHHHHHcCC
Confidence 3678999999999999 68999999998643 3567788999987765555444 45578877443 344455553
Q ss_pred ---cEEEEEcCCc-cccCCC-CCCCcEEEec
Q 025203 224 ---RIWGVVGDQW-SSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 224 ---~i~~~iGD~~-sDl~ga-~~g~r~fklP 249 (256)
+.+++|||+. +|+.+| .+|.+++.++
T Consensus 166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 166 PDRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 4699999998 799998 5799988875
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.44 E-value=4.7e-13 Score=111.97 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=68.8
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CC----CchhhhhhHHHHHHHH
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DE----YKKVQQYKAQVRKRLV 219 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----~kp~~~~K~~~r~~l~ 219 (256)
..+++||+.++|+.|+ .+++++||.+... ....|++.|+..++..++..++ .. .||++...... ++
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~---~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~---~~ 152 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAH---ARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKA---LR 152 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHH---HHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHH---HH
Confidence 3568999999999997 5799999987543 6788888999877665665544 33 37877544333 33
Q ss_pred hcCC--cEEEEEcCCccccCCC-CCCCcEEE
Q 025203 220 KEGY--RIWGVVGDQWSSFEGL-PKPKRTFK 247 (256)
Q Consensus 220 ~~g~--~i~~~iGD~~sDl~ga-~~g~r~fk 247 (256)
+.|. ..+++|||+..|+++| .+|.+++.
T Consensus 153 ~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 153 EAGVDPERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred HhCCCccceEEEeCCHHHHHHHHHcCCEEee
Confidence 3443 4589999999999987 47888764
No 40
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.44 E-value=3.6e-13 Score=111.36 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=88.1
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcc---------
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRES--------- 175 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~--------- 175 (256)
++++||.||||+.+.+. .|... . ....+++||+.++|++|+++|++++++||.+..
T Consensus 2 ~~~~~d~dg~l~~~~~~---------~~~~~-~-----~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS---------DFQVD-A-----LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCC---------ccccC-C-----HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 68999999999995431 11000 1 112578999999999999999999999997521
Q ss_pred ---cHHHHHHHHHhcCCCCcceEEEe-----cCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC-CCCCc
Q 025203 176 ---LRSYTVDNLIHVGYHGWASLELR-----GLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL-PKPKR 244 (256)
Q Consensus 176 ---~r~~T~~~L~~~G~~~~~~lilr-----~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g~r 244 (256)
....+.+.|.++|+. ++..+.+ ++....||.+... ...++..|. +.+++|||+++|+.+| .+|.+
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~~~~---~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKIKLL---EPYLKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCHHHH---HHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 123456678899997 6566665 2334557766332 233344443 4599999999999998 57888
Q ss_pred EEEecC
Q 025203 245 TFKLPN 250 (256)
Q Consensus 245 ~fklPn 250 (256)
++.+..
T Consensus 143 ~i~~~~ 148 (161)
T TIGR01261 143 GIQYDE 148 (161)
T ss_pred EEEECh
Confidence 887643
No 41
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.43 E-value=5.3e-13 Score=113.12 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++||+.++|++|+++|++++++||.+.. ....|++.|+..++..++.+ +....||++... +..+++.|.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~---~~~~~~~~~~ 176 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIF---QEALERAGIS 176 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHCCcHHhcceEEeecccCCCCCCHHHH---HHHHHHcCCC
Confidence 368999999999999999999999997642 35678888987776555544 445567877433 3444555653
Q ss_pred --EEEEEcCCc-cccCCC-CCCCcEE
Q 025203 225 --IWGVVGDQW-SSFEGL-PKPKRTF 246 (256)
Q Consensus 225 --i~~~iGD~~-sDl~ga-~~g~r~f 246 (256)
.+++|||++ +|+++| .+|.+++
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCeee
Confidence 599999998 899988 4787765
No 42
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.41 E-value=6.8e-13 Score=110.24 Aligned_cols=125 Identities=16% Similarity=0.019 Sum_probs=83.5
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccH-----
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLR----- 177 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r----- 177 (256)
..+.++||+||||+.+.... ....+++.| ..++||+.++|+.|+++|++++++||++...+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~------~~~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~ 77 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK------VFPTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSA 77 (166)
T ss_pred cCcEEEEeCCCceEecCCCC------cccCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccH
Confidence 35799999999999854210 001133333 34789999999999999999999999876421
Q ss_pred ----HHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcC----CcEEEEEcCCc--------cccCCCC-
Q 025203 178 ----SYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEG----YRIWGVVGDQW--------SSFEGLP- 240 (256)
Q Consensus 178 ----~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g----~~i~~~iGD~~--------sDl~ga~- 240 (256)
..+...|+++|++. +.++.......+||.+.. ....+++.| .+.+++|||+. +|+++|.
T Consensus 78 ~~~~~~i~~~l~~~gl~~-~~ii~~~~~~~~KP~p~~---~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~ 153 (166)
T TIGR01664 78 ESFKNKIEAFLEKLKVPI-QVLAATHAGLYRKPMTGM---WEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN 153 (166)
T ss_pred HHHHHHHHHHHHHcCCCE-EEEEecCCCCCCCCccHH---HHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH
Confidence 23567789999863 444444333456776633 233334444 35699999996 5999884
Q ss_pred CCCcE
Q 025203 241 KPKRT 245 (256)
Q Consensus 241 ~g~r~ 245 (256)
+|.++
T Consensus 154 aGi~~ 158 (166)
T TIGR01664 154 LGLEF 158 (166)
T ss_pred CCCCc
Confidence 66654
No 43
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.41 E-value=1.2e-12 Score=111.05 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=72.4
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh-cCCCCcc-eEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH-VGYHGWA-SLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~-~G~~~~~-~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
.+++||+.++++.|+++|++++++||.+... ....+.. .|+..++ .++...+....||++.... ..+++.|.
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~---~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~---~~~~~~~~ 156 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH---TTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQ---HVLQAEGF 156 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhh---HHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHH---HHHHHcCC
Confidence 4689999999999999999999999987543 2233333 3555444 4444545566788885443 33444454
Q ss_pred --cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 224 --RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
..+++|||+..|+.+| .+|.+++.++++
T Consensus 157 ~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 157 SAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred ChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 4599999999999988 489999998875
No 44
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.40 E-value=7.2e-13 Score=110.66 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=82.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc--------
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL-------- 176 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~-------- 176 (256)
++++||.||||+...+|- ..+ ....++||+.++|++|+++|++++++||.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~------------~~~------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~ 63 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV------------HEI------DNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQ 63 (176)
T ss_pred CEEEEeCCCCEeCCCCCC------------CCH------HHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHH
Confidence 689999999999644321 012 235688999999999999999999999988521
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEec-----------CCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC
Q 025203 177 ----RSYTVDNLIHVGYHGWASLELRG-----------LEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL 239 (256)
Q Consensus 177 ----r~~T~~~L~~~G~~~~~~lilr~-----------~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga 239 (256)
+......|.+.|+. ++.++... +...+||++.. ....+++.|. ..+++|||+++|+.+|
T Consensus 64 ~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~---~~~a~~~~~~~~~~~v~VGDs~~Di~aA 139 (176)
T TIGR00213 64 FEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKPGM---LLQARKELHIDMAQSYMVGDKLEDMQAG 139 (176)
T ss_pred HHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCHHH---HHHHHHHcCcChhhEEEEcCCHHHHHHH
Confidence 12233456667776 44544432 22245777633 3344455554 4589999999999998
Q ss_pred -CCCCcE-EEe
Q 025203 240 -PKPKRT-FKL 248 (256)
Q Consensus 240 -~~g~r~-fkl 248 (256)
.+|.++ +.+
T Consensus 140 ~~aG~~~~i~v 150 (176)
T TIGR00213 140 VAAKVKTNVLV 150 (176)
T ss_pred HHCCCcEEEEE
Confidence 478887 444
No 45
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.39 E-value=1.4e-12 Score=109.30 Aligned_cols=126 Identities=11% Similarity=0.028 Sum_probs=86.1
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcc-----c--
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRES-----L-- 176 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~-----~-- 176 (256)
.++++||.||||..+...|.. .++ ...++||+.++|++|+++|++++++||.+.. .
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~-----------~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVK-----------SPD------EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCccccC-----------CHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 479999999999887533211 122 2468999999999999999999999998631 1
Q ss_pred -----HHHHHHHHHhcCCCCcceEEEecC-----CCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC-CCCC
Q 025203 177 -----RSYTVDNLIHVGYHGWASLELRGL-----EDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL-PKPK 243 (256)
Q Consensus 177 -----r~~T~~~L~~~G~~~~~~lilr~~-----~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g~ 243 (256)
.+.....|++.|+. ++.++.... ....||++... ...++..|. +.+++|||+.+|+.+| .+|.
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~---~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~ 141 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGML---LSIAERLNIDLAGSPMVGDSLRDLQAAAAAGV 141 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHH---HHHHHHcCCChhhEEEEeCCHHHHHHHHHCCC
Confidence 12234456677874 455554321 23467777433 334444454 4599999999999988 4788
Q ss_pred cEEEecC
Q 025203 244 RTFKLPN 250 (256)
Q Consensus 244 r~fklPn 250 (256)
+++.++.
T Consensus 142 ~~i~v~~ 148 (181)
T PRK08942 142 TPVLVRT 148 (181)
T ss_pred eEEEEcC
Confidence 8777753
No 46
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.39 E-value=6.1e-13 Score=103.33 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=83.3
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
++|||+||||....++... .....++|++.+++++|+++|++++++||+. +......++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHH
Confidence 4799999999998755321 2347889999999999999999999999998 445778888
Q ss_pred hcCCCCcceEEEecCC-CCC----------------chhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCCCC-CCcEEE
Q 025203 186 HVGYHGWASLELRGLE-DEY----------------KKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPK-PKRTFK 247 (256)
Q Consensus 186 ~~G~~~~~~lilr~~~-~~~----------------kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~-g~r~fk 247 (256)
..|+..+...++.... ... ||.+..+....+.+. ..++.++++||+.+|+..+.. |.+++.
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 60 ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG-VDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcC-CChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 8888554443443332 111 343333323333322 224679999999999998754 777764
No 47
>PRK06769 hypothetical protein; Validated
Probab=99.38 E-value=6.5e-13 Score=110.91 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc-----H
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL-----R 177 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~-----r 177 (256)
+.++++||.||||.-.. + |.......++||+.++|++|+++|++++++||.+... .
T Consensus 3 ~~~~~~~d~d~~~~~~~------------~-------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDT------------T-------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCCC------------C-------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 56899999999994211 0 0111235789999999999999999999999987421 1
Q ss_pred HHHHHHHHhcCCCCcce-EEEec-CCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC-CCCCcEEEe
Q 025203 178 SYTVDNLIHVGYHGWAS-LELRG-LEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 178 ~~T~~~L~~~G~~~~~~-lilr~-~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g~r~fkl 248 (256)
..+...|+..|+..+.. ....+ .....||.+... .+.+++.|. +.+++|||+++|+.+| .+|.+++.+
T Consensus 64 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~---~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 64 ADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGML---LQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHH---HHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 23455577888764321 11112 224567777433 234444454 4599999999999987 478888766
No 48
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.37 E-value=3.4e-12 Score=105.58 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=69.4
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhcC--
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKEG-- 222 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~g-- 222 (256)
.+++||+.++++.|+++|++++++||.+... ...+.+.|+..++..++.+ +....||++...... +++.|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~---~~~~~~~ 156 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLA---LKKLGLK 156 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHH---HHHcCCC
Confidence 6889999999999999999999999987543 2333448887766555544 345677877444333 33334
Q ss_pred CcEEEEEcCCccccCCC-CCCCcEEE
Q 025203 223 YRIWGVVGDQWSSFEGL-PKPKRTFK 247 (256)
Q Consensus 223 ~~i~~~iGD~~sDl~ga-~~g~r~fk 247 (256)
...+++|||+..|+.+| .+|.+++.
T Consensus 157 ~~~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 157 PEECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred cceEEEEcCCHHHHHHHHHcCCEEEe
Confidence 35699999999999988 47888764
No 49
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.36 E-value=5.1e-12 Score=107.80 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=71.6
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++++.|+++|++++++||....... ....+...|+..+++.+..+ +....||++... ...+++.|.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~---~~~~~~~g~ 167 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIY---QLMLERLGV 167 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHH---HHHHHHcCC
Confidence 4678999999999999999999999998653311 23334445665554444443 334568877443 234444554
Q ss_pred --cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 224 --RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
+.+++|||+..|+.+| .+|.+++.+.++
T Consensus 168 ~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 168 APEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 3488999999999998 479999888653
No 50
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.36 E-value=1.2e-12 Score=106.06 Aligned_cols=128 Identities=23% Similarity=0.241 Sum_probs=80.5
Q ss_pred EEEEecCCCccCChHHHHHhc------cC----------CCCCC-----HHHHHHHHH-hcCCcchHHHHHHHHHHHHcC
Q 025203 106 AWIFDVDDTLLSTIPYFKKHG------FG----------GERLN-----ASSWEAWMK-ESKAPALEHTLNLFHEIKNRG 163 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~------~g----------~~~~~-----~~~~~~wv~-~~~~~~~pg~~ell~~L~~~G 163 (256)
+|+||+||||+|+.+-+.... +| +.+.. ...|++... ......+||+.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 489999999999976543321 12 11110 012222221 134567899999999999999
Q ss_pred CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc-EEEEEcCCccccCCCC
Q 025203 164 VKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR-IWGVVGDQWSSFEGLP 240 (256)
Q Consensus 164 ~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~-i~~~iGD~~sDl~ga~ 240 (256)
++++++||++... ....++.. +..++..+...++...||++... .+.+++.|.. .+++|||+..|+.++.
T Consensus 81 ~~~~i~T~~~~~~---~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~---~~~~~~~~~~~~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 81 IKLGIISNGSLRA---QKLLLRKH-LGDYFDLILGSDEFGAKPEPEIF---LAALESLGLPPEVLHVGDNLNDIEGAR 151 (154)
T ss_pred CeEEEEeCCchHH---HHHHHHHH-HHhcCcEEEecCCCCCCcCHHHH---HHHHHHcCCCCCEEEEeCCHHHHHHHH
Confidence 9999999998654 34444444 44454444444443377776433 3334444443 5899999999998874
No 51
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.36 E-value=7.4e-13 Score=107.66 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=74.7
Q ss_pred hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce-EEEecCCCCCchhhhhhHHHHHHHHhc
Q 025203 143 ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS-LELRGLEDEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 143 ~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~-lilr~~~~~~kp~~~~K~~~r~~l~~~ 221 (256)
....+++||+.++|+.|+++|++++++||.+.. .....|++.|+..++. ++...+....||++.....+.+.+ ..
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~---~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~-~~ 148 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRE---RIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKL-GI 148 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHH---HHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHH-TS
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCcc---cccccccccccccccccccccchhhhhhhHHHHHHHHHHHc-CC
Confidence 367899999999999999999999999999743 3677888888886654 444444455777775443333333 11
Q ss_pred CCcEEEEEcCCccccCCCC-CCCcEEE
Q 025203 222 GYRIWGVVGDQWSSFEGLP-KPKRTFK 247 (256)
Q Consensus 222 g~~i~~~iGD~~sDl~ga~-~g~r~fk 247 (256)
....+++|||+..|+.+|. +|.+++-
T Consensus 149 ~p~~~~~vgD~~~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 149 PPEEILFVGDSPSDVEAAKEAGIKTIW 175 (176)
T ss_dssp SGGGEEEEESSHHHHHHHHHTTSEEEE
T ss_pred CcceEEEEeCCHHHHHHHHHcCCeEEe
Confidence 3356999999999999884 7888874
No 52
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.35 E-value=5.4e-12 Score=108.43 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=71.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEec-CCCCCchhhhhhHHHHHHHHhcC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA-SLELRG-LEDEYKKVQQYKAQVRKRLVKEG 222 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~-~lilr~-~~~~~kp~~~~K~~~r~~l~~~g 222 (256)
..+++||+.++++.| +++++++||.+. ..+...|+.+|+..++ ..++.+ +....||++... ...+++.|
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~---~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~---~~a~~~~~ 156 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPV---SKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALM---FHAAEAMN 156 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcH---HHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHH---HHHHHHcC
Confidence 468899999999988 599999999864 3467788889998776 456555 345678877543 33444555
Q ss_pred Cc--EEEEEcCCccccCCC-CCCCcEEEe
Q 025203 223 YR--IWGVVGDQWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 223 ~~--i~~~iGD~~sDl~ga-~~g~r~fkl 248 (256)
.. .+++|||+++|+++| .+|.+++.+
T Consensus 157 ~~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 157 VNVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 43 489999999999987 478888766
No 53
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.35 E-value=5.9e-12 Score=103.12 Aligned_cols=110 Identities=25% Similarity=0.257 Sum_probs=86.7
Q ss_pred CCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHH
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSY 179 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~ 179 (256)
+..|.+++++|+|+||+.=. ...+-|.+.+.+..++++|++++++||.++..
T Consensus 24 ~~~Gikgvi~DlDNTLv~wd-------------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R--- 75 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPWD-------------------------NPDATPELRAWLAELKEAGIKVVVVSNNKESR--- 75 (175)
T ss_pred HHcCCcEEEEeccCceeccc-------------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH---
Confidence 34678999999999999811 24455899999999999999999999987654
Q ss_pred HHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc--EEEEEcCCc-cccCCCC-CCCcEEEe
Q 025203 180 TVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR--IWGVVGDQW-SSFEGLP-KPKRTFKL 248 (256)
Q Consensus 180 T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~--i~~~iGD~~-sDl~ga~-~g~r~fkl 248 (256)
.....+++|++. |.+. .||-+ ...++++++.+.+ .+++||||. +|+.||+ +|+||+.+
T Consensus 76 V~~~~~~l~v~f----i~~A----~KP~~---~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 76 VARAAEKLGVPF----IYRA----KKPFG---RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred HHhhhhhcCCce----eecc----cCccH---HHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 566778888873 3332 23332 5678899888875 499999997 9999996 89999987
No 54
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.33 E-value=8.5e-12 Score=106.73 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhc-C
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKE-G 222 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~-g 222 (256)
..+++||+.++++.|+++ ++++++||..... ....|+++|+..+++.++.+.. ...||++... ...++.. |
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~---~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~---~~~~~~~~~ 167 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRET---QYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIF---NYALERMPK 167 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHH---HHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHH---HHHHHHhcC
Confidence 367899999999999999 9999999987543 5667888999887666665543 4567777433 2344444 5
Q ss_pred C--cEEEEEcCCc-cccCCC-CCCCcEEEe
Q 025203 223 Y--RIWGVVGDQW-SSFEGL-PKPKRTFKL 248 (256)
Q Consensus 223 ~--~i~~~iGD~~-sDl~ga-~~g~r~fkl 248 (256)
. ..+++|||+. +|+++| .+|.+++.+
T Consensus 168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred CCchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 4 4599999997 899988 478887766
No 55
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.32 E-value=1e-11 Score=104.96 Aligned_cols=138 Identities=20% Similarity=0.140 Sum_probs=84.0
Q ss_pred CcEEEEecCCCccCChH----HHHHhccC---------CCC---------CCHHH----HHHHHH---hcCCcchHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIP----YFKKHGFG---------GER---------LNASS----WEAWMK---ESKAPALEHTLN 154 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~----~~~~~~~g---------~~~---------~~~~~----~~~wv~---~~~~~~~pg~~e 154 (256)
.++||||+||||+|..+ .+.+.++. ... .+.+. +..|.. ....+++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 47999999999999765 22222211 100 11111 222221 144679999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC----cceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG----WASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~----~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+|++|++++ +++++||.+.... ...++.+|+.. ++..++..+....||. .....+++.|.+.+++||
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~~~---~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~-----~~~~a~~~~~~~~~v~vg 152 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDSID---ALLNRQFNLNALFPGAFSEVLMCGHDESKEK-----LFIKAKEKYGDRVVCFVD 152 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccchh---HHHHhhCCHHHhCCCcccEEEEeccCcccHH-----HHHHHHHHhCCCcEEEeC
Confidence 999999975 6888898765432 22333444432 3334444433333432 233444555656789999
Q ss_pred CCccccCCCC-C--CCcEEEecC
Q 025203 231 DQWSSFEGLP-K--PKRTFKLPN 250 (256)
Q Consensus 231 D~~sDl~ga~-~--g~r~fklPn 250 (256)
|+.+|+++|. + |.+++-+.+
T Consensus 153 Ds~~di~aA~~a~~Gi~~i~~~~ 175 (197)
T PHA02597 153 DLAHNLDAAHEALSQLPVIHMLR 175 (197)
T ss_pred CCHHHHHHHHHHHcCCcEEEecc
Confidence 9999999984 6 998887743
No 56
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.32 E-value=1e-11 Score=108.54 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
...++||+.++|+.|+++ ++++++||.+.. ++..|+..++..++..+ ....||++... ...++..|.
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~---~~a~~~~~~ 178 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMY---HLAAEKLNV 178 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHH---HHHHHHcCC
Confidence 367889999999999875 999999997643 36678887766665554 34567777433 233444454
Q ss_pred --cEEEEEcCCc-cccCCC-CCCCcEEEecC
Q 025203 224 --RIWGVVGDQW-SSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 224 --~i~~~iGD~~-sDl~ga-~~g~r~fklPn 250 (256)
+.+++|||++ .|+.+| .+|.+++-+..
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 3599999995 999998 58999887753
No 57
>PLN02954 phosphoserine phosphatase
Probab=99.30 E-value=2.6e-11 Score=104.25 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=85.6
Q ss_pred CCcEEEEecCCCccCChHHHHHh-ccCC---------------CCCC-------------HHHHHHHHHhcCCcchHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKH-GFGG---------------ERLN-------------ASSWEAWMKESKAPALEHTL 153 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~-~~g~---------------~~~~-------------~~~~~~wv~~~~~~~~pg~~ 153 (256)
.+++|+||+||||+++...-.-. .||. -.+. .+.+.+++......++||+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 47899999999999986432211 1221 0110 12233444444456899999
Q ss_pred HHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC--cc--eEEEec-------CCCCCchhhhhhH-HHHHHHHhc
Q 025203 154 NLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG--WA--SLELRG-------LEDEYKKVQQYKA-QVRKRLVKE 221 (256)
Q Consensus 154 ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~--~~--~lilr~-------~~~~~kp~~~~K~-~~r~~l~~~ 221 (256)
++++.|+++|++++++|+..... +...|+.+|++. ++ .+.... ......+....|+ .+++.++..
T Consensus 91 e~l~~l~~~g~~~~IvS~~~~~~---i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~ 167 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGFRQM---IAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKH 167 (224)
T ss_pred HHHHHHHHCCCEEEEECCCcHHH---HHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHc
Confidence 99999999999999999997543 677788888862 22 111111 1000000011122 233444455
Q ss_pred CCcEEEEEcCCccccCCCCCCCcE
Q 025203 222 GYRIWGVVGDQWSSFEGLPKPKRT 245 (256)
Q Consensus 222 g~~i~~~iGD~~sDl~ga~~g~r~ 245 (256)
|...+++|||+.+|+.++.+|...
T Consensus 168 ~~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 168 GYKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred CCCceEEEeCCHHHHHhhhcCCCC
Confidence 667789999999999998654333
No 58
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.29 E-value=1.8e-11 Score=97.20 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=62.9
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHH------
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRS------ 178 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~------ 178 (256)
++|+|||||||+.+.. .+|. ...+.+++++.+++++++|+.|+++|||+...+.
T Consensus 2 K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i 61 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKI 61 (126)
T ss_pred CEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhcccccc
Confidence 6899999999987421 0111 1467899999999999999999999999987765
Q ss_pred ------HHHHHHHhcCCCCcceEEEecC
Q 025203 179 ------YTVDNLIHVGYHGWASLELRGL 200 (256)
Q Consensus 179 ------~T~~~L~~~G~~~~~~lilr~~ 200 (256)
.|.+||.+.|++ |++++++.+
T Consensus 62 ~~~~~~~t~~wL~k~~ip-Yd~l~~~kp 88 (126)
T TIGR01689 62 NIHTLPIIILWLNQHNVP-YDEIYVGKP 88 (126)
T ss_pred chhhHHHHHHHHHHcCCC-CceEEeCCC
Confidence 899999999999 899999984
No 59
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.29 E-value=2.6e-11 Score=101.96 Aligned_cols=106 Identities=11% Similarity=-0.060 Sum_probs=68.5
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEecCCCCCchhh------hhhH-HHH
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA-SLELRGLEDEYKKVQ------QYKA-QVR 215 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~kp~~------~~K~-~~r 215 (256)
...+++||+.++++.|+++|++++++||..... +...++++|+..+. ..+...+....+|.+ ..|. .++
T Consensus 77 ~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~ 153 (201)
T TIGR01491 77 KEISLRDYAEELVRWLKEKGLKTAIVSGGIMCL---AKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVE 153 (201)
T ss_pred HhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHH
Confidence 356789999999999999999999999997543 56777888887543 223332221112221 1122 223
Q ss_pred HHHHhcCC--cEEEEEcCCccccCCCC-CCCcEEEecCCC
Q 025203 216 KRLVKEGY--RIWGVVGDQWSSFEGLP-KPKRTFKLPNSM 252 (256)
Q Consensus 216 ~~l~~~g~--~i~~~iGD~~sDl~ga~-~g~r~fklPnp~ 252 (256)
+.+++.|. +.+++|||+.+|+.++. +|..+..-|+|.
T Consensus 154 ~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 154 RLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 33344443 45899999999999875 565444447664
No 60
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.24 E-value=2.4e-11 Score=102.99 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=78.6
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCC-----CHHHHHHHHH-------------------hcCCcchHHHHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERL-----NASSWEAWMK-------------------ESKAPALEHTLNLFHEIK 160 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~-----~~~~~~~wv~-------------------~~~~~~~pg~~ell~~L~ 160 (256)
+.|+||+||||++..-......+|...- +...|.+++. ....+++||+.++++.|+
T Consensus 2 ~~v~FD~DGTL~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~pg~~e~L~~L~ 81 (205)
T PRK13582 2 EIVCLDLEGVLVPEIWIAFAEKTGIPELRATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVIATLDPLPGAVEFLDWLR 81 (205)
T ss_pred eEEEEeCCCCChhhHHHHHHHHcCChHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 6899999999997532211123442110 0011222221 145678999999999999
Q ss_pred HcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEecCC---CCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccc
Q 025203 161 NRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS--LELRGLE---DEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSS 235 (256)
Q Consensus 161 ~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~--lilr~~~---~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sD 235 (256)
++ ++++++||..... +...|+++|++.++. +...+++ ...++.+..|....+.+...+ ..+++|||+.+|
T Consensus 82 ~~-~~~~IvS~~~~~~---~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~-~~~v~iGDs~~D 156 (205)
T PRK13582 82 ER-FQVVILSDTFYEF---AGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG-YRVIAAGDSYND 156 (205)
T ss_pred hc-CCEEEEeCCcHHH---HHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhC-CeEEEEeCCHHH
Confidence 99 9999999997643 677888899876532 2221111 000122233434444444333 578999999999
Q ss_pred cCCC
Q 025203 236 FEGL 239 (256)
Q Consensus 236 l~ga 239 (256)
+..+
T Consensus 157 ~~~~ 160 (205)
T PRK13582 157 TTML 160 (205)
T ss_pred HHHH
Confidence 8665
No 61
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=5.8e-11 Score=123.33 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC-CcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC-
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH-GWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY- 223 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~-~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~- 223 (256)
.++||+.++|++|+++|++++++||..... ....|+++|+. .++..++..++ ...||++..... .+++.|.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~---~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~---a~~~lgv~ 234 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIK---VDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLA---AAKILGVP 234 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHH---HHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHH---HHHHcCcC
Confidence 479999999999999999999999987543 56778899986 55555555544 456888744433 3334443
Q ss_pred -cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 224 -RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 224 -~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
..+++|||+..|+++| .+|.+++.+...
T Consensus 235 p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 235 TSECVVIEDALAGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred cccEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence 4599999999999998 479999988653
No 62
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.23 E-value=1e-10 Score=97.24 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=67.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCC----------C-------Cchh
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLED----------E-------YKKV 207 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~----------~-------~kp~ 207 (256)
..+++||+.++++.|+++|++++++||..... ....+++.|+..++..++..+.. . ..+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFF---IDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHH---HHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 46899999999999999999999999987543 56667788887765444433210 0 0011
Q ss_pred hhhhHHHHHHHHhcCCcEEEEEcCCccccCCCCCCCcEE
Q 025203 208 QQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPKPKRTF 246 (256)
Q Consensus 208 ~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~g~r~f 246 (256)
...|..+.+.+....++.+++|||+.+|+.++.....+|
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 123555555554321677999999999999986443433
No 63
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.22 E-value=9.5e-11 Score=100.41 Aligned_cols=140 Identities=19% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCcEEEEecCCCccCChHHHHHh-ccCCC-------------CCC----------------HHHHHHHHHhcCCcchHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKH-GFGGE-------------RLN----------------ASSWEAWMKESKAPALEHT 152 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~-~~g~~-------------~~~----------------~~~~~~wv~~~~~~~~pg~ 152 (256)
.+++++||+||||+++..+..-. .+|-+ ..+ .+.+.++. ...+++||+
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 90 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVR--ENLPLTEGA 90 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHH--hcCCcCCCH
Confidence 46799999999999987543221 12210 011 01111221 346789999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE-------ec----CCCCCchhhhhhHH-HHHHHHh
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLEL-------RG----LEDEYKKVQQYKAQ-VRKRLVK 220 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lil-------r~----~~~~~kp~~~~K~~-~r~~l~~ 220 (256)
.++++.|+++|++++++||.... .....++..|+..++...+ .+ .....+| |.. .++.+++
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~~~~~~~~ 163 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDL---FAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASY----KGKTLLILLRK 163 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHH---HHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcc----cHHHHHHHHHH
Confidence 99999999999999999998643 3566677788876532111 10 0001111 222 2333344
Q ss_pred cCC--cEEEEEcCCccccCCCC-CCCcEEEecCC
Q 025203 221 EGY--RIWGVVGDQWSSFEGLP-KPKRTFKLPNS 251 (256)
Q Consensus 221 ~g~--~i~~~iGD~~sDl~ga~-~g~r~fklPnp 251 (256)
.|. +.+++|||+.+|+.++. +|..+..-|++
T Consensus 164 ~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~ 197 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLSMIKAAGLGIAFNAKP 197 (219)
T ss_pred cCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCCH
Confidence 443 45889999999999874 56554433443
No 64
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.20 E-value=1.4e-11 Score=103.14 Aligned_cols=137 Identities=10% Similarity=0.076 Sum_probs=89.2
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHH----HHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCC-CcccHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEA----WMKESKAPALEHTLNLFHEIKNRGVKIFLVSSR-RESLRS 178 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~----wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR-~~~~r~ 178 (256)
++.+|||+|+|+.+..-+. .++ .++.+..-++ -.......++||+.++++.|+++|++++++||+ ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--- 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMIS---LLG-GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--- 74 (174)
T ss_pred CcEEEEeCCCCCcCccccc---ccC-CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH---
Confidence 5689999999999865221 111 1121100000 001134788999999999999999999999998 433
Q ss_pred HHHHHHHhcCCC---------CcceEEEecCCC-CCchhhhhhHHHHHHHHh-----cCCcEEEEEcCCccccCCC-CCC
Q 025203 179 YTVDNLIHVGYH---------GWASLELRGLED-EYKKVQQYKAQVRKRLVK-----EGYRIWGVVGDQWSSFEGL-PKP 242 (256)
Q Consensus 179 ~T~~~L~~~G~~---------~~~~lilr~~~~-~~kp~~~~K~~~r~~l~~-----~g~~i~~~iGD~~sDl~ga-~~g 242 (256)
.+...|..+|+. .++..++..+.. +.||.+ .+.+.+.+ ...+.+++|||+..|+.++ .+|
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~----~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aG 150 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLE----MILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYG 150 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHH----HHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhC
Confidence 356777888876 676666665432 222222 22233322 2245699999999999987 479
Q ss_pred CcEEEecCC
Q 025203 243 KRTFKLPNS 251 (256)
Q Consensus 243 ~r~fklPnp 251 (256)
.+++-++..
T Consensus 151 i~~i~v~~g 159 (174)
T TIGR01685 151 VTSCYCPSG 159 (174)
T ss_pred CEEEEcCCC
Confidence 999988754
No 65
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.20 E-value=2.2e-10 Score=94.34 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=84.1
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.|++||||||+++... | .-.+ ..++....|++.+++++++++|++++++|||+..+...|.++|.
T Consensus 1 iVisDIDGTL~~sd~~------~-~~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL------G-HVVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc------c-cccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4899999999987521 0 0000 00123446999999999999999999999999988888889998
Q ss_pred h-----cCCCCcceEEEecCCCC--------CchhhhhhHHHHHHHHh----cCCcEEEEEcCCccccCCCC----CCCc
Q 025203 186 H-----VGYHGWASLELRGLEDE--------YKKVQQYKAQVRKRLVK----EGYRIWGVVGDQWSSFEGLP----KPKR 244 (256)
Q Consensus 186 ~-----~G~~~~~~lilr~~~~~--------~kp~~~~K~~~r~~l~~----~g~~i~~~iGD~~sDl~ga~----~g~r 244 (256)
. .+++. ..+++++.... .+..-.+|.+..+.+.+ .+..++..+||..+|+..-. .-.|
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~ 144 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSR 144 (157)
T ss_pred HhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhh
Confidence 8 34652 35566554321 11112466555555554 35667888999999997631 2246
Q ss_pred EEEe
Q 025203 245 TFKL 248 (256)
Q Consensus 245 ~fkl 248 (256)
+|.+
T Consensus 145 i~~i 148 (157)
T smart00775 145 IFTI 148 (157)
T ss_pred EEEE
Confidence 6655
No 66
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.16 E-value=1.9e-10 Score=106.12 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCcEEEEecCCCccCChH--HHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCc------
Q 025203 103 GKDAWIFDVDDTLLSTIP--YFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRE------ 174 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~--~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~------ 174 (256)
++++++||.||||+.... |+... ..+..++||+.++|++|+++|++++++||++.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~-----------------~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~ 63 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDS-----------------LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSF 63 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccC-----------------cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccc
Confidence 367999999999999642 21110 12478999999999999999999999999621
Q ss_pred --c----cHHHHHHHHHhcCCCCcceEEEec-----CCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC-C
Q 025203 175 --S----LRSYTVDNLIHVGYHGWASLELRG-----LEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL-P 240 (256)
Q Consensus 175 --~----~r~~T~~~L~~~G~~~~~~lilr~-----~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~ 240 (256)
. .+..+.+.|++.|+. ++.++++. +...+||.+.. +...++..+. +.+++|||+.+|+.+| .
T Consensus 64 ~~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p~~---l~~a~~~l~v~~~~svmIGDs~sDi~aAk~ 139 (354)
T PRK05446 64 PQEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKTGL---VEEYLAEGAIDLANSYVIGDRETDVQLAEN 139 (354)
T ss_pred cHHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCHHH---HHHHHHHcCCCcccEEEEcCCHHHHHHHHH
Confidence 1 123456678888885 45555553 22345666532 2233333343 5699999999999988 5
Q ss_pred CCCcEEEecCC
Q 025203 241 KPKRTFKLPNS 251 (256)
Q Consensus 241 ~g~r~fklPnp 251 (256)
+|.+++.+ ||
T Consensus 140 aGi~~I~v-~~ 149 (354)
T PRK05446 140 MGIKGIRY-AR 149 (354)
T ss_pred CCCeEEEE-EC
Confidence 89888876 44
No 67
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.13 E-value=2.1e-10 Score=91.15 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=69.6
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCC-CcccHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSR-RESLRSYTVDN 183 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR-~~~~r~~T~~~ 183 (256)
+.++||+||||++.... ..+... =+.. .+++||+.++|+.|+++|++++++||+ +... +...
T Consensus 1 kli~~DlD~Tl~~~~~~---------~~~~~~---~~~~--~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~---~~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENI---------VVGEDP---IIDL--EVTIKEIRDKLQTLKKNGFLLALASYNDDPHV---AYEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCcc---------cccCCc---chhh--HHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH---HHHH
Confidence 47899999999985310 000000 0000 168999999999999999999999999 5433 4555
Q ss_pred HHhcC-------CCCcceEEEecCCCCCchhhhhhHHHHHHHHhcC--C--cEEEEEcCCccccCC
Q 025203 184 LIHVG-------YHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEG--Y--RIWGVVGDQWSSFEG 238 (256)
Q Consensus 184 L~~~G-------~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g--~--~i~~~iGD~~sDl~g 238 (256)
|+..| +..++..+..++. +|.+. .....++..| . ..+++|||+..++..
T Consensus 64 l~~~~~~~~i~~l~~~f~~~~~~~~---~pkp~---~~~~a~~~lg~~~~p~~~l~igDs~~n~~~ 123 (128)
T TIGR01681 64 LKIFEDFGIIFPLAEYFDPLTIGYW---LPKSP---RLVEIALKLNGVLKPKSILFVDDRPDNNEE 123 (128)
T ss_pred HHhccccccchhhHhhhhhhhhcCC---CcHHH---HHHHHHHHhcCCCCcceEEEECCCHhHHHH
Confidence 66666 4444444444322 23332 2233444445 4 459999999988653
No 68
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.11 E-value=7.3e-10 Score=95.03 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=75.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceE-EEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASL-ELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~l-ilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++|+++++|+.++++ ++++++||-... .....|++.|+..+++. +..++....||++..+.. .++..|.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~---~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~---~~~~~g~ 169 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARP---HQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEY---ALEKLGV 169 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChH---HHHHHHHHcCChhhhheEEEecccccCCCCcHHHHH---HHHHcCC
Confidence 378999999999999999 999999996432 36888999998877554 444444567888865543 3344454
Q ss_pred --cEEEEEcCCc-cccCCC-CCCCcEEEecCCC
Q 025203 224 --RIWGVVGDQW-SSFEGL-PKPKRTFKLPNSM 252 (256)
Q Consensus 224 --~i~~~iGD~~-sDl~ga-~~g~r~fklPnp~ 252 (256)
+.+++|||+. +|+.|| .+|.+++-+..+.
T Consensus 170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 170 PPEEALFVGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred CcceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence 4699999997 786776 5899987765544
No 69
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.10 E-value=4.6e-10 Score=97.26 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=98.6
Q ss_pred CCCcEEEEecCCCccCChHHHHHhc------cCCCCCC-------------------------HHHHHHHHHh-------
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHG------FGGERLN-------------------------ASSWEAWMKE------- 143 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~------~g~~~~~-------------------------~~~~~~wv~~------- 143 (256)
.+..+++||+|||++|+...|.... ||. +|+ +-++.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk-~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~ 86 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGK-PYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDR 86 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCC-CChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999998887642 231 221 1222333221
Q ss_pred --cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC-cceEEEec--CCCCCchhhhhhHHHHHHH
Q 025203 144 --SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG-WASLELRG--LEDEYKKVQQYKAQVRKRL 218 (256)
Q Consensus 144 --~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~-~~~lilr~--~~~~~kp~~~~K~~~r~~l 218 (256)
.....+||+.+|++.|+.+|+++.++|++++...+.-..+++. +-. +.+.++.+ +-..+||+|......++.+
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~--~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l 164 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHED--IFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRL 164 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhH--HHHhcCCCeecCCccccCCCCCchHHHHHHHhc
Confidence 4678899999999999999999999999987765444444331 222 33444422 2256788885443333333
Q ss_pred HhcCCcEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 219 VKEGYRIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 219 ~~~g~~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
......-+++++|++..++++ .+|++++.+|++
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 222225599999999999998 489999999983
No 70
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.10 E-value=1e-10 Score=95.81 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=72.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
++++||+||||+++..++...+ + + . ..--..++. .+++|+++|++++++||++... +...+
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~---~-~----~------~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~---~~~~l 62 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNG---E-E----I------KAFNVRDGY--GIRCALKSGIEVAIITGRKAKL---VEDRC 62 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCC---c-E----E------EEEechhHH--HHHHHHHCCCEEEEEECCCCHH---HHHHH
Confidence 6899999999999765432210 0 0 0 000011222 7999999999999999998654 67788
Q ss_pred HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcC--CcEEEEEcCCccccCCCC-CCCcEEEecC
Q 025203 185 IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEG--YRIWGVVGDQWSSFEGLP-KPKRTFKLPN 250 (256)
Q Consensus 185 ~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g--~~i~~~iGD~~sDl~ga~-~g~r~fklPn 250 (256)
+++|+..++. . ...| +. ...+.+++.| .+.+++|||+.+|+.++. +|. .|.+.|
T Consensus 63 ~~~gi~~~~~----~--~~~k--~~---~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~-~~~v~~ 119 (154)
T TIGR01670 63 KTLGITHLYQ----G--QSNK--LI---AFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL-SVAVAD 119 (154)
T ss_pred HHcCCCEEEe----c--ccch--HH---HHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC-eEecCC
Confidence 9999875432 1 1222 22 2233334444 346999999999999874 454 355544
No 71
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.09 E-value=6.5e-10 Score=92.12 Aligned_cols=144 Identities=23% Similarity=0.267 Sum_probs=96.7
Q ss_pred cCCCCCcEEEEecCCCccCChHHHHHhccCCCCCC---------HHHHHHHHHhc---CCcchHHHHHHHHHHHHcCCeE
Q 025203 99 LAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLN---------ASSWEAWMKES---KAPALEHTLNLFHEIKNRGVKI 166 (256)
Q Consensus 99 ~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~---------~~~~~~wv~~~---~~~~~pg~~ell~~L~~~G~~i 166 (256)
+.|..+-+|-||||+|+|-++|+|- .|.+.|+ +..|++ |..+ -.-|-+=+.+|++.-+++|-+|
T Consensus 58 LeG~~Pi~VsFDIDDTvLFsSp~F~---~Gk~~~sPgs~DyLknq~FW~~-vn~g~D~~SIPKevA~qLI~MHq~RGD~i 133 (237)
T COG3700 58 LEGRPPIAVSFDIDDTVLFSSPGFW---RGKKYFSPGSEDYLKNQVFWEK-VNNGWDEFSIPKEVARQLIDMHQRRGDAI 133 (237)
T ss_pred hcCCCCeeEeeccCCeeEecccccc---cCccccCCChHHhhcCHHHHHH-HhcCCccccchHHHHHHHHHHHHhcCCeE
Confidence 3456678999999999999999873 3433333 334544 3332 2446677899999999999999
Q ss_pred EEEeCCCcccHHHHHHHHH-hcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCCC----C
Q 025203 167 FLVSSRRESLRSYTVDNLI-HVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLP----K 241 (256)
Q Consensus 167 ~ivTnR~~~~r~~T~~~L~-~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~----~ 241 (256)
+|+|||+....+.+.+.|. ++.+.....++..++.. ||..-.| -..+++.+ +.+..||+.+|+.+++ .
T Consensus 134 ~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~--k~~qy~K---t~~i~~~~--~~IhYGDSD~Di~AAkeaG~R 206 (237)
T COG3700 134 YFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP--KPGQYTK---TQWIQDKN--IRIHYGDSDNDITAAKEAGAR 206 (237)
T ss_pred EEEecCCCCcccccchhHHhhcccCCCcceeeccCCC--Ccccccc---cHHHHhcC--ceEEecCCchhhhHHHhcCcc
Confidence 9999999876666667774 35565545556655432 3322222 23455544 5567999999999874 4
Q ss_pred CCcEEEecCCCC
Q 025203 242 PKRTFKLPNSMY 253 (256)
Q Consensus 242 g~r~fklPnp~Y 253 (256)
|.|...-||..|
T Consensus 207 gIRilRAaNSTy 218 (237)
T COG3700 207 GIRILRAANSTY 218 (237)
T ss_pred ceeEEecCCccC
Confidence 555556688877
No 72
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.09 E-value=5.5e-10 Score=91.61 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=89.6
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.||+|||||+..|.-. .+.+. ..++...-||+.+++++++++|+++.++|+|+..+...|..+|.
T Consensus 1 VVvsDIDGTiT~SD~~--G~i~~-------------~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVL--GHILP-------------ILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccchh--hhhhh-------------ccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 4899999999998521 00000 01223456999999999999999999999999999999999999
Q ss_pred hc-----CCCCcceEEEecCC---------CCCchhhhhhHHHHHHHHhc----CCcEEEEEcCCccccCCCC----CCC
Q 025203 186 HV-----GYHGWASLELRGLE---------DEYKKVQQYKAQVRKRLVKE----GYRIWGVVGDQWSSFEGLP----KPK 243 (256)
Q Consensus 186 ~~-----G~~~~~~lilr~~~---------~~~kp~~~~K~~~r~~l~~~----g~~i~~~iGD~~sDl~ga~----~g~ 243 (256)
+. ++|. -.+++.++. -..+| ..||....+.++.. +-.+..-+|+..+|+.+-. .-.
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p-~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~ 143 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDP-EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS 143 (157)
T ss_pred HHHhCCccCCC-CCEEECCcchhhhhhccccccCh-HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh
Confidence 88 7873 445555322 11222 36887777777765 6667889999999997632 234
Q ss_pred cEEEe
Q 025203 244 RTFKL 248 (256)
Q Consensus 244 r~fkl 248 (256)
|+|.+
T Consensus 144 rIF~I 148 (157)
T PF08235_consen 144 RIFII 148 (157)
T ss_pred hEEEE
Confidence 66665
No 73
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.08 E-value=6.3e-10 Score=92.59 Aligned_cols=110 Identities=20% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
.+.+++++|+|||++... ...++|++.++|+.|+++|++++++||.+... ...
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~--~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQ--RAK 75 (170)
T ss_pred CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCchHH--HHH
Confidence 467899999999998732 24678999999999999999999999987322 234
Q ss_pred HHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCc-cccCCC-CCCCcEEEec
Q 025203 182 DNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQW-SSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 182 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~-sDl~ga-~~g~r~fklP 249 (256)
..++..|+..+. ...||.+... ...+++.|. ..+++|||+. +|+.+| .+|.+++.+.
T Consensus 76 ~~~~~~gl~~~~--------~~~KP~p~~~---~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~ 136 (170)
T TIGR01668 76 AVEKALGIPVLP--------HAVKPPGCAF---RRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVE 136 (170)
T ss_pred HHHHHcCCEEEc--------CCCCCChHHH---HHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence 445666764211 1235655332 233444444 3599999998 799998 4788888773
No 74
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.08 E-value=8.9e-10 Score=84.19 Aligned_cols=58 Identities=16% Similarity=0.367 Sum_probs=50.3
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
++||+||||... ..++||+.+++++|+++|.+++|+||.+...++...+.|++
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 689999999982 46899999999999999999999999999888899999999
Q ss_pred cCCCC
Q 025203 187 VGYHG 191 (256)
Q Consensus 187 ~G~~~ 191 (256)
+|++.
T Consensus 54 ~Gi~~ 58 (101)
T PF13344_consen 54 LGIPV 58 (101)
T ss_dssp TTTT-
T ss_pred cCcCC
Confidence 99984
No 75
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.07 E-value=6.1e-10 Score=95.98 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred CcEEEEecCCCccCChHHHHH-hccCCC--------------CC-----------CHHHHHHHHH--hcCCcchHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKK-HGFGGE--------------RL-----------NASSWEAWMK--ESKAPALEHTLNL 155 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~-~~~g~~--------------~~-----------~~~~~~~wv~--~~~~~~~pg~~el 155 (256)
+.+++||.||||++......- ..++.. .+ .....++..+ ....+++||+.++
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~pG~~e~ 82 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLETAEIREGFHEF 82 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhCCCcCcCHHHH
Confidence 458999999999998876531 123210 00 0001111111 1457899999999
Q ss_pred HHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC--cc--eEEEecCC-CCCchhhh----------hhHHHHHHHHh
Q 025203 156 FHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG--WA--SLELRGLE-DEYKKVQQ----------YKAQVRKRLVK 220 (256)
Q Consensus 156 l~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~--~~--~lilr~~~-~~~kp~~~----------~K~~~r~~l~~ 220 (256)
++.|+++|++++++||..... +...|++. +.. +. ...+.++. ...||.+. -|....+.+..
T Consensus 83 l~~l~~~g~~~~IvS~~~~~~---i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~~ 158 (219)
T PRK09552 83 VQFVKENNIPFYVVSGGMDFF---VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLSD 158 (219)
T ss_pred HHHHHHcCCeEEEECCCcHHH---HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhcc
Confidence 999999999999999997543 56666666 542 11 22222221 12233332 13333333322
Q ss_pred cCCcEEEEEcCCccccCCCC
Q 025203 221 EGYRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 221 ~g~~i~~~iGD~~sDl~ga~ 240 (256)
....+++|||+.+|+.++.
T Consensus 159 -~~~~~i~iGDs~~Di~aa~ 177 (219)
T PRK09552 159 -TNDFHIVIGDSITDLEAAK 177 (219)
T ss_pred -CCCCEEEEeCCHHHHHHHH
Confidence 2345889999999999875
No 76
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.07 E-value=9.6e-11 Score=97.66 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=79.2
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+++|||+|||+.|..-++...+-....|+. ..| .-++.|+++|++++++||++... +...
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~--------------~D~--~~~~~L~~~Gi~laIiT~k~~~~---~~~~ 67 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFDI--------------KDG--MGVIVLQLCGIDVAIITSKKSGA---VRHR 67 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEec--------------chH--HHHHHHHHCCCEEEEEECCCcHH---HHHH
Confidence 6899999999999988666544322122321 122 23667889999999999998654 7788
Q ss_pred HHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 184 LIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 184 L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
|+++|+..++..+ ||.+. .++..++..|. +.+++|||+.+|+.++......|..+|.
T Consensus 68 l~~lgi~~~f~~~--------kpkp~---~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA 126 (169)
T TIGR02726 68 AEELKIKRFHEGI--------KKKTE---PYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126 (169)
T ss_pred HHHCCCcEEEecC--------CCCHH---HHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCc
Confidence 8999998654321 22232 23344455554 4599999999999987544456666653
No 77
>PLN02811 hydrolase
Probab=99.07 E-value=7.3e-10 Score=95.50 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC--C-CCCchhhhhhHHHHHHHHhc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL--E-DEYKKVQQYKAQVRKRLVKE 221 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~--~-~~~kp~~~~K~~~r~~l~~~ 221 (256)
..+++||+.++|+.|+++|++++++||..... .....++..|+..+++.++..+ + ...||++... ...+++.
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~---~~a~~~~ 150 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIF---LAAARRF 150 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHH---HHHHHHh
Confidence 56789999999999999999999999987542 1233333446655665566555 3 3467777433 2333333
Q ss_pred C-----CcEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 222 G-----YRIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 222 g-----~~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
| ...+++|||+..|+++| .+|.+++-++++
T Consensus 151 ~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 151 EDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred CCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 3 35699999999999998 479999988654
No 78
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.03 E-value=2.3e-10 Score=94.59 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=60.6
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..+++||+.++|+ +++++||.+... ....|++.|+..+++.++..+. ...||++.... ..+++.|.
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~---~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~---~~~~~~~~ 154 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWA---FDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYE---LVFDTVGL 154 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHH---HHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHH---HHHHHHCC
Confidence 4678999999998 378999987543 4667888999877665565554 56788885443 33334454
Q ss_pred --cEEEEEcCCccccCCCC
Q 025203 224 --RIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 224 --~i~~~iGD~~sDl~ga~ 240 (256)
..+++|||+..|+.||.
T Consensus 155 ~p~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 155 PPDRVLMVAAHQWDLIGAR 173 (175)
T ss_pred CHHHeEeEecChhhHHHHh
Confidence 45999999999999875
No 79
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.99 E-value=4.6e-10 Score=91.31 Aligned_cols=127 Identities=13% Similarity=0.044 Sum_probs=78.7
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCC-HHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLN-ASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~-~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
++..+|+|+||||+.+..--. .....+.+. .....+-.......++||+.++|+.|+ +|++++++|+.+... +.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~---~~ 75 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSF-KEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY---AD 75 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcC-CCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH---HH
Confidence 357899999999999752000 000000000 000000000123578999999999998 679999999998654 56
Q ss_pred HHHHhcCCCC-cceEEE-ecCCCCCchhhhhhHHHHHHHHhcC--CcEEEEEcCCccccCCCC
Q 025203 182 DNLIHVGYHG-WASLEL-RGLEDEYKKVQQYKAQVRKRLVKEG--YRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 182 ~~L~~~G~~~-~~~lil-r~~~~~~kp~~~~K~~~r~~l~~~g--~~i~~~iGD~~sDl~ga~ 240 (256)
..|++.|+.. ++..++ +++....||. |. +.++..| .+.+++|||+..|+.+++
T Consensus 76 ~il~~l~~~~~~f~~i~~~~d~~~~KP~--~~----k~l~~l~~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 76 PVLDLLDPKKYFGYRRLFRDECVFVKGK--YV----KDLSLLGRDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHhCcCCCEeeeEEECccccccCCe--Ee----ecHHHcCCChhcEEEEECCHHHhhcCc
Confidence 6677778753 434444 4444556665 32 3344444 456999999999999885
No 80
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.97 E-value=2.1e-09 Score=103.86 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc-----
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL----- 176 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~----- 176 (256)
...++++||+||||+.+.... ..+.+++.| ..++||+.+.|+.|+++|++|+|+||.+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~------~~~~~~~d~--------~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGK------VFPKGPDDW--------QIIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCCc------cCCCCHHHe--------eecccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 346899999999999764210 011234444 2357999999999999999999999987621
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhHHHHHHHHhc------CCcEEEEEcCCccccCCC
Q 025203 177 ----RSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKAQVRKRLVKE------GYRIWGVVGDQWSSFEGL 239 (256)
Q Consensus 177 ----r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~l~~~------g~~i~~~iGD~~sDl~ga 239 (256)
...+...|+++|++ ++ ++...+. ..+||.+.. ....++.. ...-+++|||...|+.++
T Consensus 232 ~~~~~~ki~~iL~~lgip-fd-viia~~~~~~RKP~pGm---~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g 300 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVP-FQ-VFIAIGAGFYRKPLTGM---WDHLKEEANDGTEIQEDDCFFVGDAAGRPANG 300 (526)
T ss_pred HHHHHHHHHHHHHHcCCc-eE-EEEeCCCCCCCCCCHHH---HHHHHHhcCcccCCCHHHeEEeCCcccchHHH
Confidence 23466778889987 44 5555443 456776633 22333332 223589999999998653
No 81
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.93 E-value=8.6e-10 Score=92.85 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
+.++++||+||||+++.-++....-....|+ . .. ...++.|+++|++++++|||+... +..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~-----~---------~d--~~~i~~L~~~Gi~v~I~T~~~~~~---v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN-----V---------RD--GYGIRCLLTSGIEVAIITGRKSKL---VED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEe-----c---------cc--hHHHHHHHHCCCEEEEEeCCCcHH---HHH
Confidence 5889999999999997432211100000111 0 01 135677888999999999997643 677
Q ss_pred HHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCCC-CCCc
Q 025203 183 NLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGLP-KPKR 244 (256)
Q Consensus 183 ~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~-~g~r 244 (256)
.++++|+..++. + ...|+ ..+.+.+++.|. +.+++|||+.+|+.++. +|..
T Consensus 81 ~l~~lgl~~~f~----g--~~~k~-----~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 81 RMTTLGITHLYQ----G--QSNKL-----IAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHcCCceeec----C--CCcHH-----HHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 888889875432 1 12222 334455555564 46999999999999874 5665
No 82
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.92 E-value=7.5e-09 Score=87.44 Aligned_cols=103 Identities=18% Similarity=0.032 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEecCC-CCCchh-----hhhhH-HHHH
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS--LELRGLE-DEYKKV-----QQYKA-QVRK 216 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~kp~-----~~~K~-~~r~ 216 (256)
..++|++.++++.++++|++++++|+.++.. ....++..|++.+.. +....++ ..+++. ...|. .+++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~---v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTIL---VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 4689999999999999999999999998654 455667788876422 2221211 111111 12232 2344
Q ss_pred HHHhcCCc--EEEEEcCCccccCCCC-CCCcEEEecCC
Q 025203 217 RLVKEGYR--IWGVVGDQWSSFEGLP-KPKRTFKLPNS 251 (256)
Q Consensus 217 ~l~~~g~~--i~~~iGD~~sDl~ga~-~g~r~fklPnp 251 (256)
.+.+.+.+ .+.++||+.+|+.... +|..+..-|+|
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 44455553 6889999999999864 67777777776
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.91 E-value=6.1e-09 Score=91.19 Aligned_cols=102 Identities=11% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
+..++++||+|||+.+. ..++||+.+++++|+++|++++|+||++.. +....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 34679999999999883 346899999999999999999999997654 33344
Q ss_pred HHHHhcCCCC-cceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCC
Q 025203 182 DNLIHVGYHG-WASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEG 238 (256)
Q Consensus 182 ~~L~~~G~~~-~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~g 238 (256)
+.|+++|++. +++.++.+.... . ..++..+++.|. +.+.+|||+..|+..
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~~----~---~~l~~~~~~~~~~~~~~~~vGd~~~d~~~ 110 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEIA----V---QMILESKKRFDIRNGIIYLLGHLENDIIN 110 (242)
T ss_pred HHHHHCCCCccccceEEccHHHH----H---HHHHhhhhhccCCCceEEEeCCcccchhh
Confidence 7899999986 666666653210 0 122233333333 458899998877753
No 84
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.90 E-value=1.1e-08 Score=87.65 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc--eEEEecCC-CCCc--hhhhhhHHHHHHHH
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA--SLELRGLE-DEYK--KVQQYKAQVRKRLV 219 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~--~lilr~~~-~~~k--p~~~~K~~~r~~l~ 219 (256)
..+++||+.++++.++++| +++++||.... .+...++++|++.+. ++...+.+ ..+. ..+..|....+.++
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~~---~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFYE---FSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK 141 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChHH---HHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH
Confidence 4578999999999999985 99999999754 367788889998653 24433211 0110 11233455555665
Q ss_pred hcCCcEEEEEcCCccccCCCC-CCCcE
Q 025203 220 KEGYRIWGVVGDQWSSFEGLP-KPKRT 245 (256)
Q Consensus 220 ~~g~~i~~~iGD~~sDl~ga~-~g~r~ 245 (256)
+.|. .+++|||+.+|+.... +|..+
T Consensus 142 ~~~~-~~v~vGDs~nDl~ml~~Ag~~i 167 (203)
T TIGR02137 142 SLYY-RVIAAGDSYNDTTMLSEAHAGI 167 (203)
T ss_pred hhCC-CEEEEeCCHHHHHHHHhCCCCE
Confidence 5554 5789999999998753 34333
No 85
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.90 E-value=2.5e-08 Score=91.22 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=63.2
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc--eEEE-----ec----CCCCCchhhhhhH
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA--SLEL-----RG----LEDEYKKVQQYKA 212 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~--~lil-----r~----~~~~~kp~~~~K~ 212 (256)
...+++||+.++++.|+++|++++++||..... +...++++|++... .+-. .+ +.... ..|.
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~---~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~----k~K~ 250 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYF---ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDA----QYKA 250 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchh---HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCc----ccHH
Confidence 357899999999999999999999999987644 44555667876421 1111 11 10111 1233
Q ss_pred H-HHHHHHhcCC--cEEEEEcCCccccCCCC-CCCcEEEecCC
Q 025203 213 Q-VRKRLVKEGY--RIWGVVGDQWSSFEGLP-KPKRTFKLPNS 251 (256)
Q Consensus 213 ~-~r~~l~~~g~--~i~~~iGD~~sDl~ga~-~g~r~fklPnp 251 (256)
. +++.+++.|. +.+++|||+.+|+..+. +| ..+.+ |+
T Consensus 251 ~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AG-lgiA~-nA 291 (322)
T PRK11133 251 DTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAG-LGIAY-HA 291 (322)
T ss_pred HHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCC-CeEEe-CC
Confidence 3 2333345564 46999999999999864 45 44444 54
No 86
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.87 E-value=1.5e-08 Score=83.51 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=60.4
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEecCC-----CCC--chhhhhhHHH
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS--LELRGLE-----DEY--KKVQQYKAQV 214 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~--lilr~~~-----~~~--kp~~~~K~~~ 214 (256)
...++.||+.++++.++++|++++++|+.... .+...++++|+..+.. +....++ ... .+...-|...
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~ 146 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDF---FVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKV 146 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHH---HHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHH
Confidence 45667899999999999999999999998754 3677778888875422 1111110 001 1122334443
Q ss_pred HHHH-HhcC--CcEEEEEcCCccccCCC
Q 025203 215 RKRL-VKEG--YRIWGVVGDQWSSFEGL 239 (256)
Q Consensus 215 r~~l-~~~g--~~i~~~iGD~~sDl~ga 239 (256)
.+.+ .+.| +..+++|||+.+|+..+
T Consensus 147 l~~~~~~~~~~~~~~~~iGDs~~D~~~~ 174 (177)
T TIGR01488 147 LKELLEESKITLKKIIAVGDSVNDLPML 174 (177)
T ss_pred HHHHHHHhCCCHHHEEEEeCCHHHHHHH
Confidence 3333 3333 45589999999998764
No 87
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.84 E-value=1e-08 Score=91.81 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=58.6
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcch-HHHHHHHHHHHHcCCeEEEEeCCCcccHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPAL-EHTLNLFHEIKNRGVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~-pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T 180 (256)
.-++.|+||+||||++... +...- ||+.++|++|+++|++++++|++.... .
T Consensus 124 ~~~kvIvFDLDgTLi~~~~------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~---v 176 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH---V 176 (301)
T ss_pred ccceEEEEecCCCCcCCCC------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH---H
Confidence 3478999999999999641 13233 999999999999999999999987543 5
Q ss_pred HHHHHhcCCCCcceEEEecCC
Q 025203 181 VDNLIHVGYHGWASLELRGLE 201 (256)
Q Consensus 181 ~~~L~~~G~~~~~~lilr~~~ 201 (256)
.+.|++.|+..+++.++.+.+
T Consensus 177 ~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 177 VESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred HHHHHHcCCCcccCEEEECCc
Confidence 688999999988766666543
No 88
>PLN02645 phosphoglycolate phosphatase
Probab=98.84 E-value=1.3e-08 Score=92.66 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
..++++||+||||++.. .++||+.+++++|+++|++++|+|||+...+....+
T Consensus 27 ~~~~~~~D~DGtl~~~~---------------------------~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~ 79 (311)
T PLN02645 27 SVETFIFDCDGVIWKGD---------------------------KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK 79 (311)
T ss_pred hCCEEEEeCcCCeEeCC---------------------------ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 46899999999999842 367999999999999999999999999888888888
Q ss_pred HHHhcCCCCcceEEEec
Q 025203 183 NLIHVGYHGWASLELRG 199 (256)
Q Consensus 183 ~L~~~G~~~~~~lilr~ 199 (256)
.|+++|++...+.++.+
T Consensus 80 ~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 80 KFESLGLNVTEEEIFSS 96 (311)
T ss_pred HHHHCCCCCChhhEeeh
Confidence 99999998544444443
No 89
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.83 E-value=1e-08 Score=93.55 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
.++++|+|+|+||....- ...+ ... -.-..++|++.++++.|+++|++++++|++++. .+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~--~e~g--~~~-----------i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~---~a~~ 63 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVL--GEDG--IDN-----------LNLSPLHKTLQEKIKTLKKQGFLLALASKNDED---DAKK 63 (320)
T ss_pred CeEEEEEcCCCCCCCCEE--ccCC--ccc-----------cccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH---HHHH
Confidence 368999999999997430 0000 000 011356899999999999999999999999864 3677
Q ss_pred HHHh----cCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhc--CCcEEEEEcCCccccCCCC
Q 025203 183 NLIH----VGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKE--GYRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 183 ~L~~----~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~--g~~i~~~iGD~~sDl~ga~ 240 (256)
.|++ +|...++..+... .||.+. .+++.+++. +.+-+++|||+..|+.++.
T Consensus 64 ~l~~~~~~~~~~~~f~~~~~~----~~pk~~---~i~~~~~~l~i~~~~~vfidD~~~d~~~~~ 120 (320)
T TIGR01686 64 VFERRKDFILQAEDFDARSIN----WGPKSE---SLRKIAKKLNLGTDSFLFIDDNPAERANVK 120 (320)
T ss_pred HHHhCccccCcHHHeeEEEEe----cCchHH---HHHHHHHHhCCCcCcEEEECCCHHHHHHHH
Confidence 7887 7777666554333 234342 233444444 4567999999999999875
No 90
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.79 E-value=3.8e-08 Score=84.52 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc---ceEEEecCC-CCCchhhh----------h
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW---ASLELRGLE-DEYKKVQQ----------Y 210 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~---~~lilr~~~-~~~kp~~~----------~ 210 (256)
..++.||+.++++.|+++|++++++|+..... ....|+.++.... ..+...+.. ...+|.+. -
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~---i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFF---VYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHH---HHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 57899999999999999999999999997544 4555665533221 123333221 12223221 2
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCccccCCCCCCCcEE
Q 025203 211 KAQVRKRLVKEGYRIWGVVGDQWSSFEGLPKPKRTF 246 (256)
Q Consensus 211 K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~g~r~f 246 (256)
|..+.+.+.. ..+.+++|||+.+|+.++..+..+|
T Consensus 145 K~~~l~~~~~-~~~~~i~iGDg~~D~~~a~~Ad~~~ 179 (214)
T TIGR03333 145 KPSLIRKLSE-PNDYHIVIGDSVTDVEAAKQSDLCF 179 (214)
T ss_pred HHHHHHHHhh-cCCcEEEEeCCHHHHHHHHhCCeeE
Confidence 3444444433 3345789999999999875433343
No 91
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.79 E-value=3.7e-08 Score=82.73 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred CcEEEEecCCCccCChH-HHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc------
Q 025203 104 KDAWIFDVDDTLLSTIP-YFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL------ 176 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~-~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~------ 176 (256)
.+++++|-||||..-.+ |. .++++| ...||+.+.+..|++.|++++++||.+.--
T Consensus 5 ~k~lflDRDGtin~d~~~yv------------~~~~~~------~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~ 66 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------------DSLDDF------QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTE 66 (181)
T ss_pred CcEEEEcCCCceecCCCccc------------CcHHHh------ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccH
Confidence 68999999999988654 21 123332 467999999999999999999999965311
Q ss_pred ------HHHHHHHHHhcCCCCcceEEEecCCCC-----CchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCC-CCC
Q 025203 177 ------RSYTVDNLIHVGYHGWASLELRGLEDE-----YKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGL-PKP 242 (256)
Q Consensus 177 ------r~~T~~~L~~~G~~~~~~lilr~~~~~-----~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g 242 (256)
-+...+.|+..|.. .+.++..+.... +||.+ ..+...+++.+. ....+|||..+|+++| .+|
T Consensus 67 ~~f~~~~~~m~~~l~~~gv~-id~i~~Cph~p~~~c~cRKP~~---gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~g 142 (181)
T COG0241 67 ADFDKLHNKMLKILASQGVK-IDGILYCPHHPEDNCDCRKPKP---GMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAG 142 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcccCCCh---HHHHHHHHHhCCCccceEEecCcHHHHHHHHHCC
Confidence 11234566677874 567777665422 34433 123334444333 4588999999999987 467
Q ss_pred CcEEEec
Q 025203 243 KRTFKLP 249 (256)
Q Consensus 243 ~r~fklP 249 (256)
.+.+.+=
T Consensus 143 i~~~~~~ 149 (181)
T COG0241 143 IKGVLVL 149 (181)
T ss_pred CCceEEE
Confidence 7766553
No 92
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.76 E-value=3.6e-08 Score=87.34 Aligned_cols=64 Identities=13% Similarity=0.253 Sum_probs=54.6
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
++++||+||||++... ....++|++.+++++|+++|++++|+|||+...++...+.|
T Consensus 2 k~i~~D~DGtl~~~~~-----------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA-----------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC-----------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 5899999999998431 00127899999999999999999999999998888889999
Q ss_pred HhcCCCC
Q 025203 185 IHVGYHG 191 (256)
Q Consensus 185 ~~~G~~~ 191 (256)
+.+|++.
T Consensus 59 ~~~g~~~ 65 (257)
T TIGR01458 59 QRLGFDI 65 (257)
T ss_pred HHcCCCC
Confidence 9999973
No 93
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.76 E-value=8.7e-08 Score=82.71 Aligned_cols=98 Identities=16% Similarity=0.025 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE-ecCC-CCCc---h--hhhhhHH-HHHH
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLEL-RGLE-DEYK---K--VQQYKAQ-VRKR 217 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lil-r~~~-~~~k---p--~~~~K~~-~r~~ 217 (256)
.+..||+.++++.++++|++++++||..... +....+.+|++.+....+ ..++ ..+. + ....|.. +++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l---v~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL---VEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHH---HHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 7889999999999999999999999998754 556667789986532222 2211 1110 1 1133433 3344
Q ss_pred HHhcCCc--EEEEEcCCccccCCC-CCCCcEE
Q 025203 218 LVKEGYR--IWGVVGDQWSSFEGL-PKPKRTF 246 (256)
Q Consensus 218 l~~~g~~--i~~~iGD~~sDl~ga-~~g~r~f 246 (256)
+.+.|.+ .+..+||+.+|+..- .+|.++.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia 184 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPMLEAAGLPIA 184 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHHHHhCCCCeE
Confidence 4555765 699999999999653 2344433
No 94
>PRK10444 UMP phosphatase; Provisional
Probab=98.75 E-value=4.9e-08 Score=86.15 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=56.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+.++||+||||++.. .++|++.++++.|+++|.+++++|||+...+....+.|
T Consensus 2 ~~v~~DlDGtL~~~~---------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHDN---------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeCC---------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 589999999999832 46899999999999999999999999998888899999
Q ss_pred HhcCCCCcceEEEe
Q 025203 185 IHVGYHGWASLELR 198 (256)
Q Consensus 185 ~~~G~~~~~~lilr 198 (256)
+++|++.-.+.++.
T Consensus 55 ~~~G~~~~~~~i~t 68 (248)
T PRK10444 55 ATAGVDVPDSVFYT 68 (248)
T ss_pred HHcCCCCCHhhEec
Confidence 99999643333333
No 95
>PRK08238 hypothetical protein; Validated
Probab=98.74 E-value=5.7e-08 Score=93.30 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCccCChHHHHHhcc--CCCCCC-----------HHHHHHHHH------hcCCcchHHHHHHHHHHHHc
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGF--GGERLN-----------ASSWEAWMK------ESKAPALEHTLNLFHEIKNR 162 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~--g~~~~~-----------~~~~~~wv~------~~~~~~~pg~~ell~~L~~~ 162 (256)
......+||+||||+.+.-.+....+ ...++. .....+.+. ....+..|++.+++++++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 34568999999999998755443221 111111 011111111 13346779999999999999
Q ss_pred CCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhH-HHHHHHHhcCCcEEEEEcCCccccCCCCC
Q 025203 163 GVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKA-QVRKRLVKEGYRIWGVVGDQWSSFEGLPK 241 (256)
Q Consensus 163 G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~-~~r~~l~~~g~~i~~~iGD~~sDl~ga~~ 241 (256)
|++++++|++++.. +...+++.|+ ++.++..++....|+.+ |. .+.+.+ |-+-+.++||+.+|+.....
T Consensus 88 G~~v~LaTas~~~~---a~~i~~~lGl--Fd~Vigsd~~~~~kg~~--K~~~l~~~l---~~~~~~yvGDS~~Dlp~~~~ 157 (479)
T PRK08238 88 GRKLVLATASDERL---AQAVAAHLGL--FDGVFASDGTTNLKGAA--KAAALVEAF---GERGFDYAGNSAADLPVWAA 157 (479)
T ss_pred CCEEEEEeCCCHHH---HHHHHHHcCC--CCEEEeCCCccccCCch--HHHHHHHHh---CccCeeEecCCHHHHHHHHh
Confidence 99999999998754 5666777887 34444443333333332 22 222222 32335789999999987643
Q ss_pred CCcEE
Q 025203 242 PKRTF 246 (256)
Q Consensus 242 g~r~f 246 (256)
..+.+
T Consensus 158 A~~av 162 (479)
T PRK08238 158 ARRAI 162 (479)
T ss_pred CCCeE
Confidence 23433
No 96
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.4e-07 Score=79.31 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=87.9
Q ss_pred CcEEEEecCCCccCChHHHHHhc---------------cCC-CCCC-------------HHHHHHHHHhcCCcchHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHG---------------FGG-ERLN-------------ASSWEAWMKESKAPALEHTLN 154 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~---------------~g~-~~~~-------------~~~~~~wv~~~~~~~~pg~~e 154 (256)
.++|+||+|-|++.-.-.-.-+. +|+ -+|. .....+++...+...-||+.+
T Consensus 16 ~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~e 95 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIRE 95 (227)
T ss_pred cCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHHH
Confidence 47999999999998542211111 222 2331 234556666778888999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC---c-ceEEEecCC-------CCCchhhhhhHHHHHHHHh-cC
Q 025203 155 LFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG---W-ASLELRGLE-------DEYKKVQQYKAQVRKRLVK-EG 222 (256)
Q Consensus 155 ll~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~---~-~~lilr~~~-------~~~kp~~~~K~~~r~~l~~-~g 222 (256)
|.+.|+++|.+++++||.-... ....=..+|++- | ..+.+..++ .....+..-|++..+.+++ ..
T Consensus 96 Lv~~L~~~~~~v~liSGGF~~~---i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~~ 172 (227)
T KOG1615|consen 96 LVSRLHARGTQVYLISGGFRQL---IEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNYN 172 (227)
T ss_pred HHHHHHHcCCeEEEEcCChHHH---HHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCCC
Confidence 9999999999999999986443 222223467763 2 222222221 1111233456666666654 23
Q ss_pred CcEEEEEcCCccccCCCCCCCcEEE
Q 025203 223 YRIWGVVGDQWSSFEGLPKPKRTFK 247 (256)
Q Consensus 223 ~~i~~~iGD~~sDl~ga~~g~r~fk 247 (256)
+..+.+|||.-+|+.+-+.|.-++-
T Consensus 173 ~~~~~mvGDGatDlea~~pa~afi~ 197 (227)
T KOG1615|consen 173 YKTIVMVGDGATDLEAMPPADAFIG 197 (227)
T ss_pred hheeEEecCCccccccCCchhhhhc
Confidence 4568999999999998764444433
No 97
>PRK11590 hypothetical protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=81.42 Aligned_cols=103 Identities=10% Similarity=0.051 Sum_probs=60.2
Q ss_pred CcchHHHHHHH-HHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC--CCCc--hhhhhhHHHHHHHHh
Q 025203 146 APALEHTLNLF-HEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE--DEYK--KVQQYKAQVRKRLVK 220 (256)
Q Consensus 146 ~~~~pg~~ell-~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~~K~~~r~~l~~ 220 (256)
..++||+.+++ +.++++|++++++||+++.. +...+..+|+..-++++...-. ..++ ...-+..+....+++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~---~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~ 170 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPL---VEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLER 170 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHH---HHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHH
Confidence 56799999999 67888999999999998754 5667777775222233322211 0111 011121222222222
Q ss_pred ---cCCcEEEEEcCCccccCCCC-CCCcEEEecCC
Q 025203 221 ---EGYRIWGVVGDQWSSFEGLP-KPKRTFKLPNS 251 (256)
Q Consensus 221 ---~g~~i~~~iGD~~sDl~ga~-~g~r~fklPnp 251 (256)
.....+...||+.+|+.--. ++..+..=|+|
T Consensus 171 ~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 171 KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 24556778999999997643 34333333554
No 98
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.70 E-value=9e-08 Score=85.62 Aligned_cols=62 Identities=18% Similarity=0.348 Sum_probs=54.2
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.++|+|||||||++. ..++||+.+++++|+++|++++++|||+...+....+.
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 468999999999883 24679999999999999999999999998777778889
Q ss_pred HHhcCCCCc
Q 025203 184 LIHVGYHGW 192 (256)
Q Consensus 184 L~~~G~~~~ 192 (256)
|+++|++.-
T Consensus 55 l~~~G~~~~ 63 (279)
T TIGR01452 55 FARLGFNGL 63 (279)
T ss_pred HHHcCCCCC
Confidence 999999743
No 99
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.66 E-value=2.9e-07 Score=76.58 Aligned_cols=119 Identities=21% Similarity=0.168 Sum_probs=78.0
Q ss_pred cCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCe--EEEEeCCCccc
Q 025203 99 LAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVK--IFLVSSRRESL 176 (256)
Q Consensus 99 ~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~--i~ivTnR~~~~ 176 (256)
++..|.+++|||.|+||..-. ...+-|...+.++++++.+.. |.|+||.....
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 455789999999999998722 244558888999999999875 99999985221
Q ss_pred H---HHHHHHH-HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhc----CCcEEEEEcCCc-cccCCCC-CCCcEE
Q 025203 177 R---SYTVDNL-IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKE----GYRIWGVVGDQW-SSFEGLP-KPKRTF 246 (256)
Q Consensus 177 r---~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~----g~~i~~~iGD~~-sDl~ga~-~g~r~f 246 (256)
. ..-.+.+ +.+|++. ++-. ..||.. ..++.+.+... ..+.+++||||. +|+.+|+ .|..++
T Consensus 91 ~d~~~~~a~~~~~~lgIpv-----l~h~--~kKP~~--~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~ti 161 (168)
T PF09419_consen 91 DDPDGERAEALEKALGIPV-----LRHR--AKKPGC--FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTI 161 (168)
T ss_pred cCccHHHHHHHHHhhCCcE-----EEeC--CCCCcc--HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEE
Confidence 1 1113333 5578772 2221 234411 12344444332 356799999997 9999986 677887
Q ss_pred EecCC
Q 025203 247 KLPNS 251 (256)
Q Consensus 247 klPnp 251 (256)
.+-++
T Consensus 162 lv~~g 166 (168)
T PF09419_consen 162 LVTDG 166 (168)
T ss_pred EEecC
Confidence 76554
No 100
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.4e-07 Score=84.11 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
+..++++||+||||... ..++||+.+++++|+++|.+++|+||++...+....
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 45789999999999972 568899999999999999999999999999988888
Q ss_pred HHHHh-cCCCCc-ceEEEecCCC-----CCch-hhhh---hHHHHHHHHhcCCcEEE
Q 025203 182 DNLIH-VGYHGW-ASLELRGLED-----EYKK-VQQY---KAQVRKRLVKEGYRIWG 227 (256)
Q Consensus 182 ~~L~~-~G~~~~-~~lilr~~~~-----~~kp-~~~~---K~~~r~~l~~~g~~i~~ 227 (256)
+.|.. .|.+.. ++++.++... +.++ ...| -.+++.+++..|+.++.
T Consensus 59 ~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 59 ARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred HHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEec
Confidence 88988 555443 4444333210 1111 1112 14567788877876543
No 101
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.64 E-value=1.1e-07 Score=85.22 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=58.3
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcc-hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPA-LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~-~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T 180 (256)
.-++.++||+||||++... .... -|++.++|++|+++|++++++||++... .
T Consensus 126 ~~~~~i~~D~D~TL~~~~~------------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~---v 178 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE------------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREH---V 178 (303)
T ss_pred eeccEEEEecCCCccCCCC------------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHH---H
Confidence 3478999999999999641 2323 3999999999999999999999986543 6
Q ss_pred HHHHHhcCCCCcceEEEecCC
Q 025203 181 VDNLIHVGYHGWASLELRGLE 201 (256)
Q Consensus 181 ~~~L~~~G~~~~~~lilr~~~ 201 (256)
...|+++|+..++..++.++.
T Consensus 179 ~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 179 VHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred HHHHHHcCCCccccEEEECCC
Confidence 788999999988776666544
No 102
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.60 E-value=2.1e-07 Score=81.31 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=77.3
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc-ceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW-ASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~-~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
-...++++++++.|+++|..+.++||-+... ...|...|+..+ +.++.+......||++..+....+.+. ....
T Consensus 112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~----~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~-v~Pe 186 (237)
T KOG3085|consen 112 WKYLDGMQELLQKLRKKGTILGIISNFDDRL----RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLG-VKPE 186 (237)
T ss_pred ceeccHHHHHHHHHHhCCeEEEEecCCcHHH----HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhC-CChH
Confidence 4567899999999999999999999988765 356667787665 455666666677899855433333221 1245
Q ss_pred EEEEEcCCc-cccCCC-CCCCcEEEecCCCC
Q 025203 225 IWGVVGDQW-SSFEGL-PKPKRTFKLPNSMY 253 (256)
Q Consensus 225 i~~~iGD~~-sDl~ga-~~g~r~fklPnp~Y 253 (256)
.|+.|||.. +|++|| ..|.+++.+-|.+.
T Consensus 187 e~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 187 ECVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred HeEEecCccccccHhHHHcCCEEEEEccccc
Confidence 699999997 899998 58999999888765
No 103
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.59 E-value=2.6e-07 Score=81.47 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=52.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+.++||+||||++.. .++|++.+++++|+++|++++|+||++.+.+....+.|
T Consensus 2 ~~~~~D~DGtl~~~~---------------------------~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKGK---------------------------ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcCC---------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 589999999999842 35789999999999999999999997766677788999
Q ss_pred HhcCCCCc
Q 025203 185 IHVGYHGW 192 (256)
Q Consensus 185 ~~~G~~~~ 192 (256)
+++|++.-
T Consensus 55 ~~~g~~~~ 62 (249)
T TIGR01457 55 ASFDIPAT 62 (249)
T ss_pred HHcCCCCC
Confidence 99999854
No 104
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.57 E-value=1.9e-07 Score=78.94 Aligned_cols=126 Identities=18% Similarity=0.332 Sum_probs=76.4
Q ss_pred EEEecCCCccCChHHHHHh---ccCCCC-CCH------HHHHHH--------------HHh----cCCcchHHHHHHHHH
Q 025203 107 WIFDVDDTLLSTIPYFKKH---GFGGER-LNA------SSWEAW--------------MKE----SKAPALEHTLNLFHE 158 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~---~~g~~~-~~~------~~~~~w--------------v~~----~~~~~~pg~~ell~~ 158 (256)
|.+||||||.|....+... .|+..+ .+. ..+..| ... ...+|+||+.+.+++
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~ 84 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALKK 84 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHHH
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHHH
Confidence 8999999999987654432 344320 110 011222 111 357999999999999
Q ss_pred HHHcCCeEEEEeCCCcc----cHHHHHHHHHhc-CCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCc
Q 025203 159 IKNRGVKIFLVSSRRES----LRSYTVDNLIHV-GYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQW 233 (256)
Q Consensus 159 L~~~G~~i~ivTnR~~~----~r~~T~~~L~~~-G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~ 233 (256)
|.++|+.+++||+|+.. ....|.+||++. |...++.+++..+. . + .+.+ ++|.|++
T Consensus 85 L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~K----~-----------~--v~~D--vlIDD~~ 145 (191)
T PF06941_consen 85 LRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGDK----T-----------L--VGGD--VLIDDRP 145 (191)
T ss_dssp HHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESSG----G-----------G--C--S--EEEESSS
T ss_pred HHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecCC----C-----------e--Eecc--EEecCCh
Confidence 99999999999999865 467899999886 33225677776431 0 0 1223 5799998
Q ss_pred cccCCC-CCCCcEEEecCC
Q 025203 234 SSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 234 sDl~ga-~~g~r~fklPnp 251 (256)
.-+... ..|..++.+..|
T Consensus 146 ~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 146 HNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp HHHSS-SSESSEEEEE--G
T ss_pred HHHHhccCCCceEEEEcCC
Confidence 655543 467788877655
No 105
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.49 E-value=1.6e-06 Score=75.86 Aligned_cols=131 Identities=20% Similarity=0.265 Sum_probs=83.5
Q ss_pred EEEEecCCCccCCh-HHHHHhccCCCCC--------CHHHHHHHHHh-------------------cCCcchHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTI-PYFKKHGFGGERL--------NASSWEAWMKE-------------------SKAPALEHTLNLFH 157 (256)
Q Consensus 106 avvfDiDgTlldn~-~~~~~~~~g~~~~--------~~~~~~~wv~~-------------------~~~~~~pg~~ell~ 157 (256)
.+|||.|+|+++.. ..+.-..++.+.. ....|.+++.. ...|.-||+.++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 48999999999854 3333333443322 11235555432 46788999999999
Q ss_pred HH--HHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEe--------------cCCCCCc---hhhhhhHHHHHHH
Q 025203 158 EI--KNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELR--------------GLEDEYK---KVQQYKAQVRKRL 218 (256)
Q Consensus 158 ~L--~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr--------------~~~~~~k---p~~~~K~~~r~~l 218 (256)
.+ ++.|+.++|+|....-. ...+|++.|+...+.-|.. +...+.+ |.-.-|..+.+.+
T Consensus 82 ~l~~~~~~~~~~IiSDaNs~f---I~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~~ 158 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDANSFF---IETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKILERL 158 (234)
T ss_pred HHHhcCCCceEEEEeCCcHhH---HHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHHHHHH
Confidence 99 45899999999987655 6888999999764322222 2211111 2112344444444
Q ss_pred Hhc----C--CcEEEEEcCCccccCCC
Q 025203 219 VKE----G--YRIWGVVGDQWSSFEGL 239 (256)
Q Consensus 219 ~~~----g--~~i~~~iGD~~sDl~ga 239 (256)
.+. | |+-++||||.-+|+=.+
T Consensus 159 ~~~~~~~g~~~~rviYiGDG~nD~Cp~ 185 (234)
T PF06888_consen 159 LQEQAQRGVPYDRVIYIGDGRNDFCPA 185 (234)
T ss_pred HHHHhhcCCCcceEEEECCCCCCcCcc
Confidence 332 4 77899999999999654
No 106
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.48 E-value=3.3e-07 Score=79.56 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=69.5
Q ss_pred HHHHHHhc--CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhc---CCCCcceEEEecCCCCCchhhhhh
Q 025203 137 WEAWMKES--KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHV---GYHGWASLELRGLEDEYKKVQQYK 211 (256)
Q Consensus 137 ~~~wv~~~--~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~---G~~~~~~lilr~~~~~~kp~~~~K 211 (256)
|.+.+..+ +.+++||+.++|++|+++|++++++||.+... ....+++. ++..++..++.. ....||++...
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~---~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p~~y 158 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA---QKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEAQSY 158 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHhhccccchhhhcceEEEe-CcccCCCHHHH
Confidence 44444332 45799999999999999999999999987543 23334443 343333323322 12346666433
Q ss_pred HHHHHHHHhcCC--cEEEEEcCCccccCCC-CCCCcEEEec
Q 025203 212 AQVRKRLVKEGY--RIWGVVGDQWSSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 212 ~~~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g~r~fklP 249 (256)
. +.+++.|. +.+++|||+..|+.+| .+|.+++.+-
T Consensus 159 ~---~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 159 V---KIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred H---HHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 2 33344454 4599999999999998 4899988773
No 107
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.43 E-value=2.1e-07 Score=75.79 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
..+-+|||+||||.|-.-||..++-.-+.|+. ..|. -++.|.+.|++++++|||.... .++
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv--------------~DG~--Gik~l~~~Gi~vAIITGr~s~i---ve~ 67 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNV--------------RDGH--GIKLLLKSGIKVAIITGRDSPI---VEK 67 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeec--------------cCcH--HHHHHHHcCCeEEEEeCCCCHH---HHH
Confidence 45789999999999999888766533334431 1121 2566889999999999998754 677
Q ss_pred HHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 183 NLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 183 ~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
..+.+|+.. ++....+ + - ..+ .++++++ ..+++.+.||||.++|+..
T Consensus 68 Ra~~LGI~~---~~qG~~d-K--~-~a~-~~L~~~~-~l~~e~~ayiGDD~~Dlpv 114 (170)
T COG1778 68 RAKDLGIKH---LYQGISD-K--L-AAF-EELLKKL-NLDPEEVAYVGDDLVDLPV 114 (170)
T ss_pred HHHHcCCce---eeechHh-H--H-HHH-HHHHHHh-CCCHHHhhhhcCccccHHH
Confidence 888899963 3433321 1 0 111 2333333 2356779999999999864
No 108
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.42 E-value=6e-07 Score=79.17 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=47.5
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||+++. ...-|.+.+.+++++++|++++++|||+... ....
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRHHVA---IHPF 53 (272)
T ss_pred ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHH
Confidence 5789999999999854 2344778999999999999999999998654 4566
Q ss_pred HHhcCCCC
Q 025203 184 LIHVGYHG 191 (256)
Q Consensus 184 L~~~G~~~ 191 (256)
++.+|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 67777764
No 109
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.41 E-value=6.5e-07 Score=77.07 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=45.7
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||++.. ...-|.+.+.+++|+++|++++++|||+... ....
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~---~~~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNVLCF---ARAA 53 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCchHH---HHHH
Confidence 4789999999999853 1233788999999999999999999999654 3344
Q ss_pred HHhcCCCC
Q 025203 184 LIHVGYHG 191 (256)
Q Consensus 184 L~~~G~~~ 191 (256)
++.+|++.
T Consensus 54 ~~~l~~~~ 61 (230)
T PRK01158 54 AKLIGTSG 61 (230)
T ss_pred HHHhCCCC
Confidence 55666654
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.41 E-value=1e-06 Score=77.89 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=46.6
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||+++. ...-|.+.+.+++|+++|++++++|||+... +...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRPYAG---VHRY 53 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCChHH---HHHH
Confidence 5789999999999853 1233778999999999999999999998654 4556
Q ss_pred HHhcCCC
Q 025203 184 LIHVGYH 190 (256)
Q Consensus 184 L~~~G~~ 190 (256)
++.+|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 6677764
No 111
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.41 E-value=3.2e-07 Score=75.71 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=62.5
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCC--CHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc------
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERL--NASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL------ 176 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~--~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~------ 176 (256)
+...||+||||+.+... ..| +++.| .-..|++.+.|++|.+.|++|+++||-..-.
T Consensus 1 Kia~fD~DgTLi~~~s~--------~~f~~~~~D~--------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~ 64 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG--------KKFPKDPDDW--------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEK 64 (159)
T ss_dssp SEEEE-SCTTTEE-STS--------TTS-SSTCGG--------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCC
T ss_pred CEEEEeCCCCccCCCCC--------CcCcCCHHHh--------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccc
Confidence 46789999999987531 222 12222 1223579999999999999999999975322
Q ss_pred -----HHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhhHHHHHHHHhc-------CCcEEEEEcCCccc
Q 025203 177 -----RSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYKAQVRKRLVKE-------GYRIWGVVGDQWSS 235 (256)
Q Consensus 177 -----r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~l~~~-------g~~i~~~iGD~~sD 235 (256)
.......++.+|++. .++.... +.-+||.+ ++...+.+. ...-..+|||...+
T Consensus 65 ~~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 65 DLENFHEKIENILKELGIPI--QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred hHHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccCCC
Confidence 233445667788882 3333333 34566654 333433321 12348999998544
No 112
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.40 E-value=1.2e-06 Score=72.94 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCC-C-----Cchhh-h--hhHHHHHHH--
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLED-E-----YKKVQ-Q--YKAQVRKRL-- 218 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~-~-----~kp~~-~--~K~~~r~~l-- 218 (256)
|++.++++.++++|++++++|+.+... +...++..|++... ++...... . .+-.+ . -|....+.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~---i~~~~~~~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEI---IEPIAERLGIDDDN-VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHH---HHHHHHHTTSSEGG-EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHH---HHHHHHHcCCCceE-EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHH
Confidence 444499999999999999999997543 56666788998532 11111100 0 00000 0 144444444
Q ss_pred -H--hcCCcEEEEEcCCccccC
Q 025203 219 -V--KEGYRIWGVVGDQWSSFE 237 (256)
Q Consensus 219 -~--~~g~~i~~~iGD~~sDl~ 237 (256)
. ..+...++++||+.+|+.
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~ 189 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLP 189 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHH
T ss_pred HhhcCCCCCeEEEEECCHHHHH
Confidence 1 246778999999999985
No 113
>PRK10976 putative hydrolase; Provisional
Probab=98.40 E-value=7.1e-07 Score=78.77 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=47.4
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||+++. ...-|.+.+.+++++++|++++++|||+... ....
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRHHVD---VGQI 52 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHH
Confidence 3689999999999853 1234778999999999999999999998654 4556
Q ss_pred HHhcCCCCc
Q 025203 184 LIHVGYHGW 192 (256)
Q Consensus 184 L~~~G~~~~ 192 (256)
++.+|++.+
T Consensus 53 ~~~l~~~~~ 61 (266)
T PRK10976 53 RDNLEIKSY 61 (266)
T ss_pred HHhcCCCCe
Confidence 677777643
No 114
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.40 E-value=7.2e-07 Score=79.12 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=48.3
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||+++. ...-|.+++.+++|+++|++++++|||+... ..+.
T Consensus 2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRHVLE---MQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH---HHHH
Confidence 4689999999999853 2344788999999999999999999998654 5566
Q ss_pred HHhcCCCCc
Q 025203 184 LIHVGYHGW 192 (256)
Q Consensus 184 L~~~G~~~~ 192 (256)
++.+|+..+
T Consensus 53 ~~~l~~~~~ 61 (272)
T PRK15126 53 LGALSLDAY 61 (272)
T ss_pred HHHcCCCCc
Confidence 777887643
No 115
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.37 E-value=1e-06 Score=75.40 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=44.4
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+.|++||||||+++. ...-|.+.+.+++|+++|++++++|||+... ..+.+
T Consensus 2 k~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~---~~~~~ 52 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNTVPF---ARALA 52 (215)
T ss_pred cEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCcchh---HHHHH
Confidence 589999999999843 2244788999999999999999999998654 33344
Q ss_pred HhcCCC
Q 025203 185 IHVGYH 190 (256)
Q Consensus 185 ~~~G~~ 190 (256)
+.+++.
T Consensus 53 ~~l~~~ 58 (215)
T TIGR01487 53 VLIGTS 58 (215)
T ss_pred HHhCCC
Confidence 555554
No 116
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.37 E-value=8.9e-07 Score=78.80 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=48.4
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.+++||||||+++. ....|++.+.+++|+++|++++++|||+... ....
T Consensus 4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~---~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKTAAE---VEVL 54 (273)
T ss_pred ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHH
Confidence 5789999999999843 2344789999999999999999999998644 5666
Q ss_pred HHhcCCCCc
Q 025203 184 LIHVGYHGW 192 (256)
Q Consensus 184 L~~~G~~~~ 192 (256)
++++|+..+
T Consensus 55 ~~~l~l~~~ 63 (273)
T PRK00192 55 RKELGLEDP 63 (273)
T ss_pred HHHcCCCCC
Confidence 777887643
No 117
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.31 E-value=5.3e-06 Score=71.42 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=58.8
Q ss_pred CcchHHHHHHHH-HHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC--CCCc----hhh-hhhHH-HHH
Q 025203 146 APALEHTLNLFH-EIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE--DEYK----KVQ-QYKAQ-VRK 216 (256)
Q Consensus 146 ~~~~pg~~ell~-~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k----p~~-~~K~~-~r~ 216 (256)
..++|++.++++ +++++|++++++||+++.. +....+..|+-+-++++...-. +.++ +.. +-|.. +.+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~---~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPL---VEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHH---HHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 367999999996 7888999999999998754 4444445444222333322210 1011 110 12221 222
Q ss_pred HHHhcCCcEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 217 RLVKEGYRIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 217 ~l~~~g~~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
.+ ...+..+...||+.+|+.-- .++..+..=|+|
T Consensus 170 ~~-~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 170 KI-GSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred Hh-CCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 22 22556778999999999763 344444443544
No 118
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.31 E-value=1.5e-06 Score=76.63 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=48.8
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
.+.++|||||||++.. ...-|.+.+.+++++++|++++++|||+-.. ....
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~---~~~~ 53 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRPLPD---VLSI 53 (264)
T ss_pred eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCChHH---HHHH
Confidence 5799999999999965 2355889999999999999999999998644 5666
Q ss_pred HHhcCCCC
Q 025203 184 LIHVGYHG 191 (256)
Q Consensus 184 L~~~G~~~ 191 (256)
++.+|...
T Consensus 54 ~~~l~~~~ 61 (264)
T COG0561 54 LEELGLDG 61 (264)
T ss_pred HHHcCCCc
Confidence 67777764
No 119
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.28 E-value=1.9e-06 Score=76.67 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
.++.|++||||||+++. ....+.+.+.+++|+++|++++++|||+... ...
T Consensus 6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~---i~~ 56 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKTAAE---MLP 56 (271)
T ss_pred CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCCHHH---HHH
Confidence 46899999999999843 1233678899999999999999999999654 455
Q ss_pred HHHhcCCC
Q 025203 183 NLIHVGYH 190 (256)
Q Consensus 183 ~L~~~G~~ 190 (256)
.++.+|++
T Consensus 57 ~~~~l~~~ 64 (271)
T PRK03669 57 LQQTLGLQ 64 (271)
T ss_pred HHHHhCCC
Confidence 66677774
No 120
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.28 E-value=1.5e-06 Score=74.43 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=41.6
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
|+|||||||+++. ...-|.+.+.+++|+++|++++++|||+.... .+.++.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~---~~~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNSVQFA---RALAKL 51 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCchHHH---HHHHHH
Confidence 5899999999854 12337778899999999999999999987552 334455
Q ss_pred cCCC
Q 025203 187 VGYH 190 (256)
Q Consensus 187 ~G~~ 190 (256)
+|++
T Consensus 52 l~~~ 55 (225)
T TIGR01482 52 IGTP 55 (225)
T ss_pred hCCC
Confidence 5544
No 121
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.27 E-value=1.8e-06 Score=74.07 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=43.4
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
|++|||||||++. ....+.+.+.++.|+++|++++++|||+... +...++.
T Consensus 2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~---~~~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKTAAE---VEYLQKA 52 (221)
T ss_pred EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHH
Confidence 7899999999853 1234558899999999999999999999754 4556666
Q ss_pred cCCC
Q 025203 187 VGYH 190 (256)
Q Consensus 187 ~G~~ 190 (256)
+|++
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 7765
No 122
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.24 E-value=1.7e-06 Score=71.46 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=72.9
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHH-HHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNAS-SWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~-~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
++.+|+|+||||+.+..--... ...|.-. ..+.=...-....-||+.+||+.|.+. +.|++.|+.++.. +..
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y---A~~ 73 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV---DADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY---ADP 73 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC---CCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH---HHH
Confidence 4689999999999875221100 0000000 000000001145679999999999988 9999999998665 455
Q ss_pred HHHhcCCCC-c-ceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCCC
Q 025203 183 NLIHVGYHG-W-ASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 183 ~L~~~G~~~-~-~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~ 240 (256)
.|..++... + ...+.|......++. + .+.|...|. +-+++|||+..|+.++.
T Consensus 74 il~~ldp~~~~f~~~l~r~~~~~~~~~--~----~K~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 74 VLDILDRGGKVISRRLYRESCVFTNGK--Y----VKDLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HHHHHCcCCCEEeEEEEccccEEeCCC--E----EeEchhcCCChhhEEEEeCChhhhccCc
Confidence 666666543 3 345555543222222 2 233444453 35899999999998764
No 123
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.24 E-value=2.5e-06 Score=74.87 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=45.2
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.++|||||||++.. ...-+.+.+.+++|+++|++++++|||+... ....++
T Consensus 1 li~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~---~~~~~~ 51 (256)
T TIGR00099 1 LIFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRPYKE---VKNILK 51 (256)
T ss_pred CEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHH
Confidence 37899999999853 1233788999999999999999999998543 456667
Q ss_pred hcCCCC
Q 025203 186 HVGYHG 191 (256)
Q Consensus 186 ~~G~~~ 191 (256)
++|+..
T Consensus 52 ~~~~~~ 57 (256)
T TIGR00099 52 ELGLDT 57 (256)
T ss_pred HcCCCC
Confidence 777763
No 124
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.23 E-value=2.5e-06 Score=74.09 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=44.8
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.|+|||||||++.. ...|++.+.+++|+++|++++++|||+... ....++
T Consensus 1 li~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~---~~~~~~ 50 (225)
T TIGR02461 1 VIFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKTRAE---QEYYRE 50 (225)
T ss_pred CEEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHH
Confidence 37899999999832 134679999999999999999999998654 456677
Q ss_pred hcCCCC
Q 025203 186 HVGYHG 191 (256)
Q Consensus 186 ~~G~~~ 191 (256)
++|+..
T Consensus 51 ~lg~~~ 56 (225)
T TIGR02461 51 ELGVEP 56 (225)
T ss_pred HcCCCC
Confidence 788753
No 125
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.23 E-value=2.4e-06 Score=73.19 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=45.4
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
|++||||||++.. ...-|.+++.++.|+++|++++++|||+... ....+..
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~---~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRSYSS---IKRLLKE 51 (254)
T ss_dssp EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSSTHHH---HHHHHHH
T ss_pred cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCcccc---ccccccc
Confidence 6899999999943 2244899999999999999999999998654 5666677
Q ss_pred cCCCC
Q 025203 187 VGYHG 191 (256)
Q Consensus 187 ~G~~~ 191 (256)
.++..
T Consensus 52 ~~~~~ 56 (254)
T PF08282_consen 52 LGIDD 56 (254)
T ss_dssp TTHCS
T ss_pred ccchh
Confidence 77763
No 126
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.19 E-value=4.2e-06 Score=75.31 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=45.8
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
++.|++|||||||+...| ..+.+.+.+++|+++|++++++|||+... ....
T Consensus 1 ~KLIftDLDGTLLd~~~~--------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e---v~~l 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN--------------------------SYGAARQALAALERRSIPLVLYSLRTRAQ---LEHL 51 (302)
T ss_pred CcEEEEeCCCCCcCCCCc--------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHH
Confidence 468999999999995421 23668899999999999999999998654 4455
Q ss_pred HHhcCCCC
Q 025203 184 LIHVGYHG 191 (256)
Q Consensus 184 L~~~G~~~ 191 (256)
++.+|+..
T Consensus 52 ~~~Lgl~~ 59 (302)
T PRK12702 52 CRQLRLEH 59 (302)
T ss_pred HHHhCCCC
Confidence 56667754
No 127
>PTZ00174 phosphomannomutase; Provisional
Probab=98.18 E-value=3e-06 Score=74.50 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=39.7
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
+.+.|++|||||||++. ...-|.+.+.+++++++|++++++|||+..
T Consensus 4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 46799999999999854 223377899999999999999999999864
No 128
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.17 E-value=3.7e-06 Score=73.49 Aligned_cols=58 Identities=12% Similarity=0.304 Sum_probs=50.7
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
++||+||||++.. .++|++.+.++.++++|+++.++||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~~---------------------------~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGH---------------------------KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCC---------------------------ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999953 3579999999999999999999999887777788888988
Q ss_pred -cCCCC
Q 025203 187 -VGYHG 191 (256)
Q Consensus 187 -~G~~~ 191 (256)
.|++.
T Consensus 54 ~~g~~~ 59 (236)
T TIGR01460 54 LLGVDV 59 (236)
T ss_pred hcCCCC
Confidence 78864
No 129
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.17 E-value=4e-06 Score=73.80 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
+++||||||+++. ....+.+.+.+++|+++|++++++|||+... ....+++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~---~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKTAAE---VEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHH
Confidence 7899999999854 1133568999999999999999999998654 5667777
Q ss_pred cCCCC
Q 025203 187 VGYHG 191 (256)
Q Consensus 187 ~G~~~ 191 (256)
+|++.
T Consensus 53 ~~~~~ 57 (256)
T TIGR01486 53 LGLED 57 (256)
T ss_pred cCCCC
Confidence 88764
No 130
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.16 E-value=1.3e-05 Score=71.68 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce------EEEecCC-C
Q 025203 130 ERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS------LELRGLE-D 202 (256)
Q Consensus 130 ~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~------lilr~~~-~ 202 (256)
..++.+...+.+.....++.||+.+|++.|+++|++++++|+.... .....|+++|+...+. +....++ .
T Consensus 104 ~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~---~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvl 180 (277)
T TIGR01544 104 QAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGN---VLEEVLRQAGVYHPNVKVVSNFMDFDEDGVL 180 (277)
T ss_pred CCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHH---HHHHHHHHcCCCCcCceEEeeeEEECCCCeE
Confidence 3455666666666678999999999999999999999999998753 4677788888843222 2233322 2
Q ss_pred CCchhh----hhhHH-HHH-HHHh----cCCcEEEEEcCCccccCCCC
Q 025203 203 EYKKVQ----QYKAQ-VRK-RLVK----EGYRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 203 ~~kp~~----~~K~~-~r~-~l~~----~g~~i~~~iGD~~sDl~ga~ 240 (256)
.+++.+ ..|.+ +.. ..+. ..++-+++|||+.+|+.++.
T Consensus 181 tG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 181 KGFKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred eCCCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 233333 23322 221 1111 24566899999999999875
No 131
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.15 E-value=1.9e-05 Score=65.01 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=78.0
Q ss_pred CCCcEEEEecCCCccCChHHHHHhc---cCCCCCCHH------HHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCC
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHG---FGGERLNAS------SWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSR 172 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~---~g~~~~~~~------~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR 172 (256)
.++..+|+|+|+||+.+..-..... +.....+.+ .|.-=.........||+.++|+.|++. ++++++|++
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence 5788999999999999763211000 000000000 000000012356789999999999955 999999999
Q ss_pred CcccHHHHHHHHHhcCCCC-cc-e-EEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCCCCCCcEEEec
Q 025203 173 RESLRSYTVDNLIHVGYHG-WA-S-LELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPKPKRTFKLP 249 (256)
Q Consensus 173 ~~~~r~~T~~~L~~~G~~~-~~-~-lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~g~r~fklP 249 (256)
++.. +...|+.++... ++ + ++.+++.. + ...| .+.. +-....+.++.|+|++.-..... .-.+.++
T Consensus 83 ~~~y---A~~vl~~ldp~~~~F~~ri~~rd~~~-~---~~~K-dL~~-i~~~d~~~vvivDd~~~~~~~~~--~N~i~i~ 151 (156)
T TIGR02250 83 TRAY---AQAIAKLIDPDGKYFGDRIISRDESG-S---PHTK-SLLR-LFPADESMVVIIDDREDVWPWHK--RNLIQIE 151 (156)
T ss_pred cHHH---HHHHHHHhCcCCCeeccEEEEeccCC-C---Cccc-cHHH-HcCCCcccEEEEeCCHHHhhcCc--cCEEEeC
Confidence 8765 556666666653 43 4 34444321 1 1122 1211 11223456889999986554433 3456665
Q ss_pred CCCCC
Q 025203 250 NSMYY 254 (256)
Q Consensus 250 np~Y~ 254 (256)
-..||
T Consensus 152 ~~~~f 156 (156)
T TIGR02250 152 PYNYF 156 (156)
T ss_pred CcccC
Confidence 55553
No 132
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.10 E-value=2.7e-05 Score=66.92 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=85.7
Q ss_pred CCCCCcEEEEecCCCccCChHH-HHHhccCCCC--------CCHHHHHHHHHh-------------------cCCcchHH
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPY-FKKHGFGGER--------LNASSWEAWMKE-------------------SKAPALEH 151 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~-~~~~~~g~~~--------~~~~~~~~wv~~-------------------~~~~~~pg 151 (256)
++..+-.++||.|.|++|-..+ +.....+.+. +....|++++.. ...|..||
T Consensus 9 ~~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pg 88 (256)
T KOG3120|consen 9 SSSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPG 88 (256)
T ss_pred ccCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCcc
Confidence 3445678999999999985422 2222222111 112348888763 36788999
Q ss_pred HHHHHHHHHHcCC-eEEEEeCCCcccHHHHHHHHHhcCCCCcc--------------eEEEecCCC-C---CchhhhhhH
Q 025203 152 TLNLFHEIKNRGV-KIFLVSSRRESLRSYTVDNLIHVGYHGWA--------------SLELRGLED-E---YKKVQQYKA 212 (256)
Q Consensus 152 ~~ell~~L~~~G~-~i~ivTnR~~~~r~~T~~~L~~~G~~~~~--------------~lilr~~~~-~---~kp~~~~K~ 212 (256)
++++++.+++.|. .+.|||....-. ..++|+++|+...+ ++.+++... + .+|.---|-
T Consensus 89 mv~lik~~ak~g~~eliIVSDaNsfF---Ie~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg 165 (256)
T KOG3120|consen 89 MVRLIKSAAKLGCFELIIVSDANSFF---IEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKG 165 (256)
T ss_pred HHHHHHHHHhCCCceEEEEecCchhH---HHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhh
Confidence 9999999999996 999999887654 68888988886532 355555432 1 123222232
Q ss_pred HHHHHH----HhcC--CcEEEEEcCCccccC
Q 025203 213 QVRKRL----VKEG--YRIWGVVGDQWSSFE 237 (256)
Q Consensus 213 ~~r~~l----~~~g--~~i~~~iGD~~sDl~ 237 (256)
.+..++ .+.| |+-.+|+||.-+|+=
T Consensus 166 ~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~C 196 (256)
T KOG3120|consen 166 LVLDELVASQLKDGVRYERLIYVGDGANDFC 196 (256)
T ss_pred HHHHHHHHHHhhcCCceeeEEEEcCCCCCcC
Confidence 222222 2334 457899999999984
No 133
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.09 E-value=1.8e-05 Score=67.50 Aligned_cols=101 Identities=17% Similarity=0.293 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
.+.+.+++||-|||.... .++||+.+.++.|+.++.+|-|+||.+...+....
T Consensus 5 ~~v~gvLlDlSGtLh~e~---------------------------~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~ 57 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIED---------------------------AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLH 57 (262)
T ss_pred cccceEEEeccceEeccc---------------------------ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHH
Confidence 356799999999998843 37899999999999999999999999988888889
Q ss_pred HHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-ccccCCCC
Q 025203 182 DNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-WSSFEGLP 240 (256)
Q Consensus 182 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~sDl~ga~ 240 (256)
+.|.+.||..-++-|..+. +..+..+++.+++.-+.|.|. ..||.+-.
T Consensus 58 ~rL~rlgf~v~eeei~tsl-----------~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 58 ERLQRLGFDVSEEEIFTSL-----------PAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHHhCCCccHHHhcCcc-----------HHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 9999999985333333321 345677788889987778777 48887753
No 134
>PLN02887 hydrolase family protein
Probab=98.09 E-value=8.4e-06 Score=80.05 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=46.1
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
+.+.|++||||||+++. ...-+.+++.+++++++|++++++|||+... ...
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~---i~~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKARPA---VID 357 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCCHHH---HHH
Confidence 35799999999999854 1234778999999999999999999998654 445
Q ss_pred HHHhcCCC
Q 025203 183 NLIHVGYH 190 (256)
Q Consensus 183 ~L~~~G~~ 190 (256)
.++.+|+.
T Consensus 358 ~l~~L~l~ 365 (580)
T PLN02887 358 ILKMVDLA 365 (580)
T ss_pred HHHHhCcc
Confidence 55656653
No 135
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.06 E-value=9.3e-05 Score=65.57 Aligned_cols=88 Identities=19% Similarity=0.462 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCccCChHHHHHh-----cc------CCCCCC--HHHHHHHH----HhcCCcch-HHHHHHHHHHHHcCC
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKH-----GF------GGERLN--ASSWEAWM----KESKAPAL-EHTLNLFHEIKNRGV 164 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~-----~~------g~~~~~--~~~~~~wv----~~~~~~~~-pg~~ell~~L~~~G~ 164 (256)
..--||||||+||+-...+.... .+ +..... .+.+.+|+ ...+..++ +.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 45689999999999765222111 01 101111 24566776 44444433 789999999999999
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 165 KIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 165 ~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+++-+|.|+...+..|.+.|+++|+.
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 99999999999999999999999987
No 136
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.04 E-value=1.1e-05 Score=73.74 Aligned_cols=59 Identities=8% Similarity=0.219 Sum_probs=49.1
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR----GVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~----G~~i~ivTnR~~~~r~~T~ 181 (256)
+++||+||||+++. +++|++.++++.|+++ |+++.++||.....+....
T Consensus 2 ~~ifD~DGvL~~g~---------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRGK---------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECCc---------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 78999999999853 4589999999999998 9999999999866555555
Q ss_pred HHH-HhcCCCC
Q 025203 182 DNL-IHVGYHG 191 (256)
Q Consensus 182 ~~L-~~~G~~~ 191 (256)
+.| +++|++.
T Consensus 55 ~~l~~~lG~~~ 65 (321)
T TIGR01456 55 EEISSLLGVDV 65 (321)
T ss_pred HHHHHHcCCCC
Confidence 666 7888863
No 137
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.01 E-value=1e-05 Score=72.41 Aligned_cols=97 Identities=19% Similarity=0.332 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
++.+.++||.||.|.. ...++||+.+.++.|++.|-.++|+||.+...|+...
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 3458999999998877 2568999999999999999999999999999999999
Q ss_pred HHHHhcCCCCc-ceEEEecCC------CCCch--hhhh---hHHHHHHHHhcCCcE
Q 025203 182 DNLIHVGYHGW-ASLELRGLE------DEYKK--VQQY---KAQVRKRLVKEGYRI 225 (256)
Q Consensus 182 ~~L~~~G~~~~-~~lilr~~~------~~~kp--~~~~---K~~~r~~l~~~g~~i 225 (256)
+..+++|+... .+-|+.+.. .+.+| ...| -+.++++|++.|++.
T Consensus 73 kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~ 128 (306)
T KOG2882|consen 73 KKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEY 128 (306)
T ss_pred HHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCcee
Confidence 99999999843 222222211 00111 1111 267899999988654
No 138
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.97 E-value=1.4e-05 Score=66.70 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=67.3
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHH-HHHH--hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWE-AWMK--ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~-~wv~--~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T 180 (256)
|+.||||+|.||.+-.-+.. ...||....=. .-+. -.....+|++.+.|+.|+++|++++++|...+. +.+
T Consensus 3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~A 76 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DWA 76 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HHH
T ss_pred CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HHH
Confidence 68999999999999543211 12222110000 0000 123578999999999999999999999965543 357
Q ss_pred HHHHHhcCCC----------CcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC-CCCCCcEEEec
Q 025203 181 VDNLIHVGYH----------GWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG-LPKPKRTFKLP 249 (256)
Q Consensus 181 ~~~L~~~G~~----------~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g-a~~g~r~fklP 249 (256)
.+.|+.++++ .++... +-..+.. ......+++.. .-.|+..+++.|...-+.. ...|..++..|
T Consensus 77 ~~~L~~l~i~~~~~~~~~~~~~F~~~---eI~~gsK-~~Hf~~i~~~t-gI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~ 151 (169)
T PF12689_consen 77 RELLKLLEIDDADGDGVPLIEYFDYL---EIYPGSK-TTHFRRIHRKT-GIPYEEMLFFDDESRNIEVVSKLGVTCVLVP 151 (169)
T ss_dssp HHHHHHTT-C----------CCECEE---EESSS-H-HHHHHHHHHHH----GGGEEEEES-HHHHHHHHTTT-EEEE-S
T ss_pred HHHHHhcCCCccccccccchhhcchh---heecCch-HHHHHHHHHhc-CCChhHEEEecCchhcceeeEecCcEEEEeC
Confidence 8888888888 332110 1011111 11222222211 1236678999998744433 23788888888
Q ss_pred CC
Q 025203 250 NS 251 (256)
Q Consensus 250 np 251 (256)
|-
T Consensus 152 ~G 153 (169)
T PF12689_consen 152 DG 153 (169)
T ss_dssp SS
T ss_pred CC
Confidence 84
No 139
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.96 E-value=1.2e-05 Score=67.77 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=59.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++.|++.++++.|+++|+++.++||..+.. +....+.+|+.. ..+..... .||.+.....+.+.+... ..
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~---a~~~~~~lgi~~--~~v~a~~~--~kP~~k~~~~~i~~l~~~-~~ 196 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNEST---ASAIAKQLGIFD--SIVFARVI--GKPEPKIFLRIIKELQVK-PG 196 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHH---HHHHHHHTTSCS--EEEEESHE--TTTHHHHHHHHHHHHTCT-GG
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccc---cccccccccccc--cccccccc--ccccchhHHHHHHHHhcC-CC
Confidence 46789999999999999999999999986543 566677889953 22222211 355553223344444322 23
Q ss_pred EEEEEcCCccccCCC
Q 025203 225 IWGVVGDQWSSFEGL 239 (256)
Q Consensus 225 i~~~iGD~~sDl~ga 239 (256)
.+++|||+.+|+.++
T Consensus 197 ~v~~vGDg~nD~~al 211 (215)
T PF00702_consen 197 EVAMVGDGVNDAPAL 211 (215)
T ss_dssp GEEEEESSGGHHHHH
T ss_pred EEEEEccCHHHHHHH
Confidence 799999999998764
No 140
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.95 E-value=3e-05 Score=71.49 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=65.4
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhc-C-------CCCcceEEEecCCCC-----C--------
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHV-G-------YHGWASLELRGLEDE-----Y-------- 204 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~-G-------~~~~~~lilr~~~~~-----~-------- 204 (256)
..+.||+.++|++|+++|++++++||++... |...|+.+ | +..++..++.+...+ +
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~y---t~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY---TDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeC
Confidence 4568999999999999999999999998655 66666664 5 555565555443210 0
Q ss_pred -----c--------hhhhhhH---HHHHHHHhcCCcEEEEEcCCc-cccCCCC--CCCcEEEe
Q 025203 205 -----K--------KVQQYKA---QVRKRLVKEGYRIWGVVGDQW-SSFEGLP--KPKRTFKL 248 (256)
Q Consensus 205 -----k--------p~~~~K~---~~r~~l~~~g~~i~~~iGD~~-sDl~ga~--~g~r~fkl 248 (256)
+ +...|.- .....+-......+++|||+. +|+.+++ .|.||+.+
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI 322 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI 322 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence 0 0112221 111222122235689999997 8999986 89999865
No 141
>PTZ00445 p36-lilke protein; Provisional
Probab=97.93 E-value=7.5e-05 Score=64.11 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=100.9
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHH---Hh
Q 025203 67 DHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWM---KE 143 (256)
Q Consensus 67 ~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv---~~ 143 (256)
..++.|+.++++.. ...-+.|..+++.+ +..|.++|++|+|.||+.-.. || + .++. ..
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~L---~~~GIk~Va~D~DnTlI~~Hs-------gG--~-----~~~~~~~~~ 71 (219)
T PTZ00445 11 DAFKEYIESGLFDH--LNPHESADKFVDLL---NECGIKVIASDFDLTMITKHS-------GG--Y-----IDPDNDDIR 71 (219)
T ss_pred HHHHHHHHhccccc--CCHHHHHHHHHHHH---HHcCCeEEEecchhhhhhhhc-------cc--c-----cCCCcchhh
Confidence 45788888877763 34455666666655 346799999999999998220 11 1 1110 00
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc------------HHHHHHHHHhcCCCC-cceEEEec------C-C--
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL------------RSYTVDNLIHVGYHG-WASLELRG------L-E-- 201 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~------------r~~T~~~L~~~G~~~-~~~lilr~------~-~-- 201 (256)
--..+-|....+++.|++.|++|++||=.++.. .+.....|++-+..- ...++..- + .
T Consensus 72 ~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 72 VLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred hhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence 012345889999999999999999999776522 123344455333321 01111110 0 0
Q ss_pred --CCCchhhhhhHH-HHHHHHhcCC--cEEEEEcCCccccCCC-CCCCcEEEecCC
Q 025203 202 --DEYKKVQQYKAQ-VRKRLVKEGY--RIWGVVGDQWSSFEGL-PKPKRTFKLPNS 251 (256)
Q Consensus 202 --~~~kp~~~~K~~-~r~~l~~~g~--~i~~~iGD~~sDl~ga-~~g~r~fklPnp 251 (256)
.-.||++..|.- ..+.+++.|. +.+++|.|...-+.+| ..|.+++.++++
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 123566655432 2334455554 4599999999888877 479999998876
No 142
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.90 E-value=8.9e-05 Score=63.76 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=92.4
Q ss_pred CCCcEEEEecCCCccCChHHHHH-----------hccC---------------------------CCCCCHHHHHHHHHh
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKK-----------HGFG---------------------------GERLNASSWEAWMKE 143 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~-----------~~~g---------------------------~~~~~~~~~~~wv~~ 143 (256)
...+.++||||+||..-+.-.+. ..+| +..++...++++|..
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~~ 92 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVHG 92 (244)
T ss_pred ccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhhc
Confidence 45689999999999875422211 1111 344667778888864
Q ss_pred ----cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc-ceEEEecCCC------CCchhhhhhH
Q 025203 144 ----SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW-ASLELRGLED------EYKKVQQYKA 212 (256)
Q Consensus 144 ----~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~-~~lilr~~~~------~~kp~~~~K~ 212 (256)
...+|=+-..++|-.|++++ ..+.||.+. ..+.+.|+.+|+.+- +.++...... --||.+...+
T Consensus 93 ~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k---~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE 167 (244)
T KOG3109|consen 93 RLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYK---VHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFE 167 (244)
T ss_pred cCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcH---HHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHH
Confidence 34677788899999998887 667899874 458999999999874 4444433221 1355553333
Q ss_pred HHHHHHHhcCCcEEEEEcCCccccCCCC-CCCcEEE
Q 025203 213 QVRKRLVKEGYRIWGVVGDQWSSFEGLP-KPKRTFK 247 (256)
Q Consensus 213 ~~r~~l~~~g~~i~~~iGD~~sDl~ga~-~g~r~fk 247 (256)
...+..--..++-+.++.|+..-+++|. .|.+++.
T Consensus 168 ~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvl 203 (244)
T KOG3109|consen 168 KAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVL 203 (244)
T ss_pred HHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEE
Confidence 3332221122557999999999999884 6777654
No 143
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=5.7e-05 Score=68.26 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=85.0
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhc-CCcchHHHHHHHHHHHHcC-CeEEEEeCCCcccHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKES-KAPALEHTLNLFHEIKNRG-VKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~-~~~~~pg~~ell~~L~~~G-~~i~ivTnR~~~~r~~T~~ 182 (256)
-.+|-|||+|+..+.-.. --...|+.|.... ..+++||+-.+|+.|.+.| ..+||+||.+...-.-..+
T Consensus 162 igiISDiDDTV~~T~V~~---------~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~e 232 (373)
T COG4850 162 IGIISDIDDTVKVTGVTE---------GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQE 232 (373)
T ss_pred eeeeeccccceEeccccc---------chHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHH
Confidence 478899999999875211 0124577777654 4689999999999999999 9999999999877666667
Q ss_pred HHHhcCCCCcceEEEecCCC----CCchhhhhh-HHHHHHHHhcCCcEEEEEcCC-ccccCC
Q 025203 183 NLIHVGYHGWASLELRGLED----EYKKVQQYK-AQVRKRLVKEGYRIWGVVGDQ-WSSFEG 238 (256)
Q Consensus 183 ~L~~~G~~~~~~lilr~~~~----~~kp~~~~K-~~~r~~l~~~g~~i~~~iGD~-~sDl~g 238 (256)
.+.+.+|| +-.++++..+. -..+....| ..++..+++.+-.-++.|||+ ..|.+.
T Consensus 233 fi~~~~~P-~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 233 FITNRNFP-YGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHhcCCCC-CCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence 77777888 45555553320 001111122 456667777666667789998 466653
No 144
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.86 E-value=3.9e-05 Score=76.04 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=46.9
Q ss_pred CCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHH
Q 025203 101 GDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 101 ~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T 180 (256)
+..++.|++||||||+++.. ...+.+.+.++.|+++|++++++|||+... .
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~--------------------------~i~~~t~eAL~~L~ekGI~~VIATGRs~~~---i 463 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT--------------------------YSYSTALDALRLLKDKELPLVFCSAKTMGE---Q 463 (694)
T ss_pred CceeeEEEEECcCCCcCCCC--------------------------ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH---H
Confidence 34678999999999999642 122567889999999999999999998654 3
Q ss_pred HHHHHhcCCC
Q 025203 181 VDNLIHVGYH 190 (256)
Q Consensus 181 ~~~L~~~G~~ 190 (256)
...++.+|+.
T Consensus 464 ~~l~~~Lgl~ 473 (694)
T PRK14502 464 DLYRNELGIK 473 (694)
T ss_pred HHHHHHcCCC
Confidence 4455666764
No 145
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.78 E-value=5.3e-05 Score=64.08 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=37.6
Q ss_pred EEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 107 WIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 107 vvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
++||+||||+++.. .++-|.+.+.+++|+++|++++++|||+...
T Consensus 2 i~~D~DgTL~~~~~-------------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~ 46 (204)
T TIGR01484 2 LFFDLDGTLLDPNA-------------------------HELSPETIEALERLREAGVKVVLVTGRSLAE 46 (204)
T ss_pred EEEeCcCCCcCCCC-------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence 78999999998431 2344889999999999999999999998654
No 146
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.75 E-value=6.4e-05 Score=65.89 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=43.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
-.|+.|+|||||+... ...+..|...+++++++++|+.++++|||+... ....+
T Consensus 2 ~li~tDlDGTLl~~~~-----------------------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~---~~~~~ 55 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTD-----------------------GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHS---YKELQ 55 (249)
T ss_pred eEEEEcCCCcCcCCCC-----------------------CChHHHHHHHHHHHHhhccCceEEEEcCCCHHH---HHHHH
Confidence 3688999999997320 013345889999999999999999999998654 34444
Q ss_pred HhcCCC
Q 025203 185 IHVGYH 190 (256)
Q Consensus 185 ~~~G~~ 190 (256)
+.++..
T Consensus 56 ~~~~~~ 61 (249)
T TIGR01485 56 KQKPLL 61 (249)
T ss_pred hcCCCC
Confidence 445554
No 147
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.74 E-value=0.00026 Score=69.11 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=80.8
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+.||-|||||+.-+.-. .|.+. + -++.=.--|+.+|+...+++||++.|+|.|.-.+-..|...|
T Consensus 531 kIVISDIDGTITKSDvL--Gh~lp---~----------iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL 595 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVL--GHVLP---M----------IGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYL 595 (738)
T ss_pred cEEEecCCCceEhhhhh--hhhhh---h----------hcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH
Confidence 57788999999987632 11110 0 011223379999999999999999999999988777777666
Q ss_pred Hh---cCCCCc-ceEEEecCCC---------CCchhhhhhHHHHHHHHhc---CCc-EEEEEcCCccccCCCC----CCC
Q 025203 185 IH---VGYHGW-ASLELRGLED---------EYKKVQQYKAQVRKRLVKE---GYR-IWGVVGDQWSSFEGLP----KPK 243 (256)
Q Consensus 185 ~~---~G~~~~-~~lilr~~~~---------~~kp~~~~K~~~r~~l~~~---g~~-i~~~iGD~~sDl~ga~----~g~ 243 (256)
++ -|..-. --+++.++.. .+||. .||-+....|+.. .++ .-.-+|...+|...-. --.
T Consensus 596 ~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe-~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~~ 674 (738)
T KOG2116|consen 596 KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPE-VFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPLS 674 (738)
T ss_pred HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCch-hhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCcc
Confidence 54 454333 3577776542 23332 3554544555432 233 3677899999987642 123
Q ss_pred cEEEe
Q 025203 244 RTFKL 248 (256)
Q Consensus 244 r~fkl 248 (256)
|.|-+
T Consensus 675 RIFtI 679 (738)
T KOG2116|consen 675 RIFTI 679 (738)
T ss_pred ceEEE
Confidence 66655
No 148
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.73 E-value=4.5e-05 Score=74.43 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHHHHcCC-eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGV-KIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~-~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..++.||+.+++++|+++|+ +++++||+++.. +...++++|++.++..+. | .-|....+.+...+
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~---a~~i~~~lgi~~~f~~~~--------p--~~K~~~i~~l~~~~- 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV---AERVARELGIDEVHAELL--------P--EDKLEIVKELREKY- 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH---HHHHHHHcCChhhhhccC--------c--HHHHHHHHHHHhcC-
Confidence 46889999999999999999 999999997643 778888999976542111 1 22344455555544
Q ss_pred cEEEEEcCCccccCCCC
Q 025203 224 RIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 224 ~i~~~iGD~~sDl~ga~ 240 (256)
+.+++|||+.+|+.++.
T Consensus 426 ~~v~~vGDg~nD~~al~ 442 (536)
T TIGR01512 426 GPVAMVGDGINDAPALA 442 (536)
T ss_pred CEEEEEeCCHHHHHHHH
Confidence 67899999999998864
No 149
>PLN02423 phosphomannomutase
Probab=97.73 E-value=5.3e-05 Score=66.67 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCCcEEE-EecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 102 DGKDAWI-FDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 102 ~~~~avv-fDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
.++++++ |||||||+++. ...-|.+.+.+++|+++ ++++++|||..
T Consensus 4 ~~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~~ 50 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSDL 50 (245)
T ss_pred CccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcCH
Confidence 3566666 99999999854 12337889999999977 99999999953
No 150
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.71 E-value=0.0001 Score=72.27 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=61.5
Q ss_pred CCcchHHHHHHHHHHHHcC-CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRG-VKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G-~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
+.+++||+.+++++|+++| ++++++||.+... +...++++|++.++..+ . +.-|....+.+...+
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~---a~~i~~~lgi~~~f~~~----~------p~~K~~~v~~l~~~~- 447 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA---AEAVAAELGIDEVHAEL----L------PEDKLAIVKELQEEG- 447 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH---HHHHHHHhCCCeeeccC----C------HHHHHHHHHHHHHcC-
Confidence 5789999999999999999 9999999997643 67788889997543221 1 123334445555444
Q ss_pred cEEEEEcCCccccCCCC
Q 025203 224 RIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 224 ~i~~~iGD~~sDl~ga~ 240 (256)
..+++|||+.+|+.++.
T Consensus 448 ~~v~~vGDg~nD~~al~ 464 (556)
T TIGR01525 448 GVVAMVGDGINDAPALA 464 (556)
T ss_pred CEEEEEECChhHHHHHh
Confidence 47899999999998864
No 151
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.67 E-value=0.00015 Score=71.19 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=59.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++.|++.+++++|+++|++++++||.++.. +...++++|++ + .... + +.-|....+.+++.+ +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~---a~~ia~~lgi~-~----~~~~----~--p~~K~~~v~~l~~~~-~ 467 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT---AKAVAKELGIN-V----RAEV----L--PDDKAALIKELQEKG-R 467 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHH---HHHHHHHcCCc-E----EccC----C--hHHHHHHHHHHHHcC-C
Confidence 46789999999999999999999999997643 66777888986 1 1111 1 123344455555544 5
Q ss_pred EEEEEcCCccccCCCC
Q 025203 225 IWGVVGDQWSSFEGLP 240 (256)
Q Consensus 225 i~~~iGD~~sDl~ga~ 240 (256)
.+++|||+.+|..+..
T Consensus 468 ~v~~VGDg~nD~~al~ 483 (562)
T TIGR01511 468 VVAMVGDGINDAPALA 483 (562)
T ss_pred EEEEEeCCCccHHHHh
Confidence 7899999999998864
No 152
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.64 E-value=8.2e-05 Score=66.28 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=40.7
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHH-cCCeEEEEeCCCccc
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKN-RGVKIFLVSSRRESL 176 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~-~G~~i~ivTnR~~~~ 176 (256)
..+++||+||||++..+. .....+-|.+.+.|+.|++ .|+.++++|||+...
T Consensus 14 ~~li~~D~DGTLl~~~~~---------------------p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~ 66 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPH---------------------PDQVVVPDNILQGLQLLATANDGALALISGRSMVE 66 (266)
T ss_pred CEEEEEecCCCCCCCCCC---------------------cccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH
Confidence 469999999999984310 0123455899999999998 799999999998654
No 153
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.55 E-value=0.00021 Score=61.97 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=38.2
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.+++|+||||+++.+.. +...+.++ ++++|++++++|||+... ..+.+.
T Consensus 1 li~~DlDgTLl~~~~~~---------------------------~~~~~~~~-~~~~gi~~viaTGR~~~~---v~~~~~ 49 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGL---------------------------ASFVELLR-GSGDAVGFGIATGRSVES---AKSRYA 49 (236)
T ss_pred CeEEeccccccCCHHHH---------------------------HHHHHHHH-hcCCCceEEEEeCCCHHH---HHHHHH
Confidence 37899999999854321 11226666 689999999999998654 455566
Q ss_pred hcCCC
Q 025203 186 HVGYH 190 (256)
Q Consensus 186 ~~G~~ 190 (256)
.+++.
T Consensus 50 ~l~l~ 54 (236)
T TIGR02471 50 KLNLP 54 (236)
T ss_pred hCCCC
Confidence 66664
No 154
>PLN03017 trehalose-phosphatase
Probab=97.54 E-value=0.00016 Score=67.23 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEE
Q 025203 88 EVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIF 167 (256)
Q Consensus 88 ~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ 167 (256)
.|...++++......++-++++|+||||+.-... ...+.+-|++.+.|++|. +|++++
T Consensus 95 sal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~---------------------p~~a~i~~~~~~aL~~La-~~~~va 152 (366)
T PLN03017 95 SALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDD---------------------PDKAFMSSKMRRTVKKLA-KCFPTA 152 (366)
T ss_pred hHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCC---------------------cccccCCHHHHHHHHHHh-cCCcEE
Confidence 3455555552333445678899999999941100 012356699999999999 789999
Q ss_pred EEeCCCcc
Q 025203 168 LVSSRRES 175 (256)
Q Consensus 168 ivTnR~~~ 175 (256)
++|||+..
T Consensus 153 IvSGR~~~ 160 (366)
T PLN03017 153 IVTGRCID 160 (366)
T ss_pred EEeCCCHH
Confidence 99999853
No 155
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.54 E-value=0.00024 Score=66.60 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=81.1
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
..+.||+|||||+.-+...=.-.++-|+.| ---|+.+++.....+|++|.++|+|+-.+...|..
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdw---------------th~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrs 438 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDW---------------THNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRS 438 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccch---------------hhcchhhhhhhhccCceEEEEEecccccchhhhhh
Confidence 467999999999998763211111112222 22578888999999999999999999877666765
Q ss_pred HH---HhcCCCCcc-eEEEecCCC---------CCchhhhhhHHHHHHHHhcCCcE---EEEEcCCccccCCC
Q 025203 183 NL---IHVGYHGWA-SLELRGLED---------EYKKVQQYKAQVRKRLVKEGYRI---WGVVGDQWSSFEGL 239 (256)
Q Consensus 183 ~L---~~~G~~~~~-~lilr~~~~---------~~kp~~~~K~~~r~~l~~~g~~i---~~~iGD~~sDl~ga 239 (256)
-| .+-|+.-++ .++|.++.. -.|| -.+|.+..+.|+..+.+. ..=+|...+|..+-
T Consensus 439 ylrnieQngykLpdgpviLspd~t~aal~relIlrkp-E~FKiayLndl~slf~e~~PFyAGFGNriTDvisY 510 (580)
T COG5083 439 YLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKP-EVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISY 510 (580)
T ss_pred HHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcCh-HHHHHHHHHHHHHhhCcCChhhccccccchhheee
Confidence 55 456877664 567766531 1222 246777777777766543 34578888888764
No 156
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.52 E-value=0.00051 Score=54.67 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=73.6
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHh--cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKE--SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~--~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
.+|+||.|+|+.|......- .+||..-+=+.-.+. .....+|.++++++.++..|+-+...|=..+ ..+.+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl----~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~---~kA~~ 73 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSL----EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE---DKAIK 73 (164)
T ss_pred CcEEEeCCCcccccccchhc----CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch---HHHHH
Confidence 37999999999995422110 133321000111111 2357899999999999999998888887665 34789
Q ss_pred HHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHH-hcC----CcEEEEEcCCcc
Q 025203 183 NLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLV-KEG----YRIWGVVGDQWS 234 (256)
Q Consensus 183 ~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~-~~g----~~i~~~iGD~~s 234 (256)
.|+.+|+..|++.++-.+.. .|.-..+ .+...+. +.+ ...++++.|+.-
T Consensus 74 aLral~~~~yFhy~ViePhP-~K~~ML~--~llr~i~~er~~~ikP~~Ivy~DDR~i 127 (164)
T COG4996 74 ALRALDLLQYFHYIVIEPHP-YKFLMLS--QLLREINTERNQKIKPSEIVYLDDRRI 127 (164)
T ss_pred HHHHhchhhhEEEEEecCCC-hhHHHHH--HHHHHHHHhhccccCcceEEEEecccc
Confidence 99999999999877765431 1111112 1222222 222 334889998853
No 157
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.49 E-value=4.2e-05 Score=66.87 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEE--EecC-CCCCchhhhhhHHHHHHHHhcCCc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLE--LRGL-EDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~li--lr~~-~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
-+|++.++++.++++|+++ ++||++.... ...+...|...+...+ ...+ ...+||.+.......+.+.....+
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~---~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGIN---QHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEecc---CCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcc
Confidence 3699999999999999996 8899986542 2334444544333322 2222 235678775443333333111124
Q ss_pred EEEEEcCC-ccccCCCC-CCCcEEEe
Q 025203 225 IWGVVGDQ-WSSFEGLP-KPKRTFKL 248 (256)
Q Consensus 225 i~~~iGD~-~sDl~ga~-~g~r~fkl 248 (256)
.+++|||+ .+|+.+|. +|.+++.+
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 59999999 59999984 68877643
No 158
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0011 Score=55.64 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=57.6
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcC----CCC---c-ceEEEecCCCCC----c--hhhh
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVG----YHG---W-ASLELRGLEDEY----K--KVQQ 209 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G----~~~---~-~~lilr~~~~~~----k--p~~~ 209 (256)
.....-||.+++++.+++++++++++|+...... ...|++.+ +.. + ....+..++... + +-..
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI---~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~ 146 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFI---YPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGH 146 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHH---HHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCC
Confidence 3467779999999999999999999999887653 23333332 211 0 111111111100 0 1112
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCccccCCCCC
Q 025203 210 YKAQVRKRLVKEGYRIWGVVGDQWSSFEGLPK 241 (256)
Q Consensus 210 ~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~~ 241 (256)
-|+...+++.+ .++-+.|+||+.+|+.++..
T Consensus 147 dK~~vI~~l~e-~~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 147 DKSSVIHELSE-PNESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred CcchhHHHhhc-CCceEEEecCCcccccHhhh
Confidence 34445555643 56668999999999999863
No 159
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.35 E-value=0.00011 Score=65.66 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE----ecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLEL----RGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lil----r~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
++++.++++.|+++|. ++++||++.... ....+...|...++..+. +.....+||.+.......+.+ ....+
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~-~~~~~ 220 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENF-SIDPA 220 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHh-CCChh
Confidence 5899999999999997 799999886431 111122223332322221 112234677774433333322 11235
Q ss_pred EEEEEcCCc-cccCCC-CCCCcEEEe
Q 025203 225 IWGVVGDQW-SSFEGL-PKPKRTFKL 248 (256)
Q Consensus 225 i~~~iGD~~-sDl~ga-~~g~r~fkl 248 (256)
.+++|||+. +|+.+| .+|.+++.+
T Consensus 221 ~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 221 RTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred hEEEECCChHHHHHHHHHcCCcEEEE
Confidence 699999995 999987 478887765
No 160
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.32 E-value=0.00096 Score=59.59 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
+.+..||||+|+||+.... ...-+-|.+.+-|++|+++|.-+++=|-.... ...
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~e---HV~ 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGNRE---HVR 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCCHH---HHH
Confidence 4567999999999998541 11235588899999999999988888877644 467
Q ss_pred HHHHhcCCCCcceEEEecC
Q 025203 182 DNLIHVGYHGWASLELRGL 200 (256)
Q Consensus 182 ~~L~~~G~~~~~~lilr~~ 200 (256)
..|+++++.+++++++.+.
T Consensus 174 ~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICGG 192 (297)
T ss_pred HHHHHhCCccccEEEEeCC
Confidence 8888889888888887653
No 161
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.27 E-value=0.0008 Score=69.51 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=65.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCC-C----------------Cchh
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLED-E----------------YKKV 207 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~-~----------------~kp~ 207 (256)
..++.|++.+.++.|++.|+++.++||..... +....++.|+...+...+.+... . ....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t---A~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQET---AVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 35889999999999999999999999987543 45556778986443222222110 0 1123
Q ss_pred hhhhHHHHHHHHhcCCcEEEEEcCCccccCCCC
Q 025203 208 QQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 208 ~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga~ 240 (256)
|..|..+-+.+++.| .+++++||..+|..+.+
T Consensus 603 P~~K~~iv~~lq~~g-~~v~mvGDGvND~pAl~ 634 (884)
T TIGR01522 603 PEHKMKIVKALQKRG-DVVAMTGDGVNDAPALK 634 (884)
T ss_pred HHHHHHHHHHHHHCC-CEEEEECCCcccHHHHH
Confidence 556677778888777 57899999999997753
No 162
>PLN02151 trehalose-phosphatase
Probab=97.18 E-value=0.00072 Score=62.62 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=45.0
Q ss_pred HHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEE
Q 025203 89 VKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFL 168 (256)
Q Consensus 89 a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~i 168 (256)
|...++++......++.++++|+||||+.-.+. ...+.+-|++.+.|+.|. ++++++|
T Consensus 83 a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~---------------------P~~A~~~~~~~~aL~~La-~~~~vaI 140 (354)
T PLN02151 83 ALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDD---------------------PDRAFMSKKMRNTVRKLA-KCFPTAI 140 (354)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCccCCCCCCC---------------------cccccCCHHHHHHHHHHh-cCCCEEE
Confidence 344444442333345679999999999953210 123567799999999999 5679999
Q ss_pred EeCCCc
Q 025203 169 VSSRRE 174 (256)
Q Consensus 169 vTnR~~ 174 (256)
+|||+.
T Consensus 141 vSGR~~ 146 (354)
T PLN02151 141 VSGRCR 146 (354)
T ss_pred EECCCH
Confidence 999974
No 163
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.99 E-value=0.00027 Score=62.55 Aligned_cols=96 Identities=8% Similarity=0.067 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC----CCCchhhhhhHHHHHHHHhcC--
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE----DEYKKVQQYKAQVRKRLVKEG-- 222 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~----~~~kp~~~~K~~~r~~l~~~g-- 222 (256)
+++..+.++.|++.|.+++++||++.... ...+...|...++..+....+ ..+||.+...... +++.|
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~---~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~---~~~~~~~ 195 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYK---RKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEA---LRATGCE 195 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCc---CCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHH---HHHhCCC
Confidence 58888899999999999999999886541 222333344333322222211 1257766443333 33334
Q ss_pred CcEEEEEcCCc-cccCCC-CCCCcEEEecC
Q 025203 223 YRIWGVVGDQW-SSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 223 ~~i~~~iGD~~-sDl~ga-~~g~r~fklPn 250 (256)
.+.+++|||+. +|+.+| .+|.+++.+..
T Consensus 196 ~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 196 PEEAVMIGDDCRDDVGGAQDCGMRGIQVRT 225 (257)
T ss_pred hhhEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence 34599999996 999987 47888877743
No 164
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.96 E-value=0.0013 Score=57.54 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=39.2
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-CCeEEEEeCCCc
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR-GVKIFLVSSRRE 174 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G~~i~ivTnR~~ 174 (256)
++.+++||+||||....+. ...+.+-|++.+.|+.|.+. +..++|+|||+.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~---------------------p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPD---------------------PDAAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred CcEEEEEecCccccCCcCC---------------------CcccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 4579999999999984310 01256679999999999877 567899999964
No 165
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.93 E-value=0.0012 Score=53.65 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=64.1
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+.+|||+||||+.+...-.. +.+...- .-.........||+.+||+.+.+ .+.+++.|...+..-....+.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhh
Confidence 47899999999997632100 0000000 00000124467999999999954 5999999999876654455555
Q ss_pred HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEec
Q 025203 185 IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLP 249 (256)
Q Consensus 185 ~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklP 249 (256)
...+-. +...+.+......+. .+. +.|...|. +-++.|.|+..-+... ....+.+|
T Consensus 73 dp~~~~-~~~~~~r~~~~~~~~--~~~----KdL~~l~~~~~~vvivDD~~~~~~~~--~~N~i~v~ 130 (159)
T PF03031_consen 73 DPNGKL-FSRRLYRDDCTFDKG--SYI----KDLSKLGRDLDNVVIVDDSPRKWALQ--PDNGIPVP 130 (159)
T ss_dssp TTTTSS-EEEEEEGGGSEEETT--EEE------GGGSSS-GGGEEEEES-GGGGTTS--GGGEEE--
T ss_pred hhhccc-ccccccccccccccc--ccc----cchHHHhhccccEEEEeCCHHHeecc--CCceEEec
Confidence 432211 344555543211110 111 34444453 5588999998765443 23445544
No 166
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0023 Score=52.98 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=77.3
Q ss_pred EEEEecCCCccCCh-------HHHHHhccCC--CCC--------CHHHHHHHHHhcCC------cchHHHHHHHHHHHHc
Q 025203 106 AWIFDVDDTLLSTI-------PYFKKHGFGG--ERL--------NASSWEAWMKESKA------PALEHTLNLFHEIKNR 162 (256)
Q Consensus 106 avvfDiDgTlldn~-------~~~~~~~~g~--~~~--------~~~~~~~wv~~~~~------~~~pg~~ell~~L~~~ 162 (256)
-+.+|||||+.+-. |+|.+..-.. ..| ..+.|.+|++..+. ..-.++...|..++++
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~ 87 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE 87 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 46799999999853 2222211111 112 24678888876443 3335556666666654
Q ss_pred CCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCc-cccCCCC-
Q 025203 163 GVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQW-SSFEGLP- 240 (256)
Q Consensus 163 G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~-sDl~ga~- 240 (256)
.+++++|.|.......|-.+|....++ |+++-+.+-. +| + ..+| .+.+-+.+.|+. +-.+.+.
T Consensus 88 -~~L~~itar~~dl~~iT~~~l~~q~ih-~~~l~i~g~h--~K--V---~~vr------th~idlf~ed~~~na~~iAk~ 152 (194)
T COG5663 88 -HRLIYITARKADLTRITYAWLFIQNIH-YDHLEIVGLH--HK--V---EAVR------THNIDLFFEDSHDNAGQIAKN 152 (194)
T ss_pred -ceeeeeehhhHHHHHHHHHHHHHhccc-hhhhhhhccc--cc--c---hhhH------hhccCccccccCchHHHHHHh
Confidence 689999999988878899999998888 6766554432 11 0 1111 234556677765 3333333
Q ss_pred CCCcEEEec
Q 025203 241 KPKRTFKLP 249 (256)
Q Consensus 241 ~g~r~fklP 249 (256)
+|.+++.+-
T Consensus 153 ~~~~vilin 161 (194)
T COG5663 153 AGIPVILIN 161 (194)
T ss_pred cCCcEEEec
Confidence 666666653
No 167
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0018 Score=57.84 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=44.9
Q ss_pred CCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-CCeEEEEeCCCccc
Q 025203 101 GDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR-GVKIFLVSSRRESL 176 (256)
Q Consensus 101 ~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G~~i~ivTnR~~~~ 176 (256)
..++.+++||.||||..-.++ ...+++.++++++|+.|.++ ...++|+|||+...
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~ 70 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAE 70 (266)
T ss_pred cccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHH
Confidence 456889999999999996542 12478899999999999998 45799999998644
No 168
>PLN02382 probable sucrose-phosphatase
Probab=96.83 E-value=0.0037 Score=59.27 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=40.9
Q ss_pred CCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHH
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSY 179 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~ 179 (256)
++..+-.|+.|||||||++..- +....+....+++++.++|+.++++|||+...
T Consensus 5 ~~~~~~lI~sDLDGTLL~~~~~-----------------------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~--- 58 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDHHDP-----------------------ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL--- 58 (413)
T ss_pred cCCCCEEEEEcCCCcCcCCCCc-----------------------cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH---
Confidence 3445668899999999985200 01111333445577899999999999998544
Q ss_pred HHHHHHhcCCC
Q 025203 180 TVDNLIHVGYH 190 (256)
Q Consensus 180 T~~~L~~~G~~ 190 (256)
..+.++..++.
T Consensus 59 ~~~l~~~~~l~ 69 (413)
T PLN02382 59 YKELRKEKPLL 69 (413)
T ss_pred HHHHHHhCCCC
Confidence 33333444443
No 169
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.80 E-value=0.0017 Score=65.75 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=41.8
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHH-cCCeEEEEeCCCcc
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKN-RGVKIFLVSSRRES 175 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~-~G~~i~ivTnR~~~ 175 (256)
.+++.++||+||||++.... .....+-+.+.+.|+.|.+ .|+.++++|||+..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 45789999999999985311 0124566899999999999 49999999999854
No 170
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.79 E-value=0.0058 Score=55.46 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=48.0
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc----CCeEEEEeCCCccc-
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR----GVKIFLVSSRRESL- 176 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~----G~~i~ivTnR~~~~- 176 (256)
..+=+++|||||.|+- ...++|++.+.++.|.+. .++.+|+||.....
T Consensus 33 ~~~fgfafDIDGVL~R---------------------------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E 85 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFR---------------------------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILE 85 (389)
T ss_pred CCceeEEEecccEEEe---------------------------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcch
Confidence 4456999999999987 256889999999999998 89999999976432
Q ss_pred HHHHHHHHHhcCCCC
Q 025203 177 RSYTVDNLIHVGYHG 191 (256)
Q Consensus 177 r~~T~~~L~~~G~~~ 191 (256)
+..+.+.=+.+|+..
T Consensus 86 ~~rA~~lS~~Lgv~V 100 (389)
T KOG1618|consen 86 SSRAQELSALLGVEV 100 (389)
T ss_pred hhHHHHHHHhhCCcc
Confidence 233444445678764
No 171
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.77 E-value=0.0031 Score=64.03 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++.|++.+.++.|+++|+++.++||..+.. +....+++|++.+.. . . |.-|....+++++. .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~---a~~ia~~lgi~~~~~-----~----~--p~~K~~~v~~l~~~--~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRA---AAAIAGELGIDFRAG-----L----L--PEDKVKAVTELNQH--A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCeecC-----C----C--HHHHHHHHHHHhcC--C
Confidence 45889999999999999999999999987543 667778899963211 1 1 22344455566543 3
Q ss_pred EEEEEcCCccccCCCC
Q 025203 225 IWGVVGDQWSSFEGLP 240 (256)
Q Consensus 225 i~~~iGD~~sDl~ga~ 240 (256)
.+++|||..+|..+..
T Consensus 630 ~v~mvGDgiNDapAl~ 645 (741)
T PRK11033 630 PLAMVGDGINDAPAMK 645 (741)
T ss_pred CEEEEECCHHhHHHHH
Confidence 6999999999987653
No 172
>PLN02580 trehalose-phosphatase
Probab=96.76 E-value=0.003 Score=59.23 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
.++.+++||.||||..-.+. -..+.+-|++.+.|+.|.+. .+++|||||+...
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~---------------------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~ 169 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDD---------------------PDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK 169 (384)
T ss_pred cCCeEEEEecCCccCCCCCC---------------------cccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH
Confidence 45679999999999863210 12466779999999999998 5899999998543
No 173
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.71 E-value=0.0039 Score=64.07 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=59.7
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++.|++.+.++.|+++|++++++||..+.. +...+++.|++.+. ..- .+..|....+.+...+ +
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~---a~~ia~~lgi~~~~----~~~------~p~~K~~~i~~l~~~~-~ 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT---ANAIAKEAGIDEVI----AGV------LPDGKAEAIKRLQSQG-R 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCCEEE----eCC------CHHHHHHHHHHHhhcC-C
Confidence 45788999999999999999999999987543 56677888986422 111 1223555555665544 4
Q ss_pred EEEEEcCCccccCCCC
Q 025203 225 IWGVVGDQWSSFEGLP 240 (256)
Q Consensus 225 i~~~iGD~~sDl~ga~ 240 (256)
.+++|||+.+|+.+..
T Consensus 714 ~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 714 QVAMVGDGINDAPALA 729 (834)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 6899999999998753
No 174
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0054 Score=61.79 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++-|++.+.++.|+++|+++.++||-.+.. ....=+++|++.+..-+ -|+-|.+.-+++++.| +
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~---A~~iA~~lGId~v~Ael----------lPedK~~~V~~l~~~g-~ 600 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRT---AEAIAKELGIDEVRAEL----------LPEDKAEIVRELQAEG-R 600 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcChHhheccC----------CcHHHHHHHHHHHhcC-C
Confidence 46788999999999999999999999976542 34444678996542111 1344566777887666 6
Q ss_pred EEEEEcCCccccCC
Q 025203 225 IWGVVGDQWSSFEG 238 (256)
Q Consensus 225 i~~~iGD~~sDl~g 238 (256)
.+++|||..||--+
T Consensus 601 ~VamVGDGINDAPA 614 (713)
T COG2217 601 KVAMVGDGINDAPA 614 (713)
T ss_pred EEEEEeCCchhHHH
Confidence 78999999999754
No 175
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.57 E-value=0.0018 Score=56.00 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=40.3
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
+..|+.|||+||+... |+ | ..+...+.+|++.|++|+++|+++........+.
T Consensus 7 ~~lIFtDlD~TLl~~~------------ye---~------------~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~ 59 (274)
T COG3769 7 PLLIFTDLDGTLLPHS------------YE---W------------QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKS 59 (274)
T ss_pred ceEEEEcccCcccCCC------------CC---C------------CccchHHHHHHHcCCeEEEeccchHHHHHHHHHh
Confidence 4688899999999932 11 1 2345678899999999999999986553334444
Q ss_pred HHhcC
Q 025203 184 LIHVG 188 (256)
Q Consensus 184 L~~~G 188 (256)
|.-.|
T Consensus 60 l~v~~ 64 (274)
T COG3769 60 LGVQG 64 (274)
T ss_pred cCCCC
Confidence 43333
No 176
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.55 E-value=0.014 Score=61.32 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc------------------------eEEEecC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA------------------------SLELRGL 200 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~------------------------~lilr~~ 200 (256)
..|+-|++.+.+++|+++|+++.++|||.... +....++.|+..-. .+++.+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~t---a~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT---AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 46889999999999999999999999998654 44455666763110 1233322
Q ss_pred CCC-------------------CchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 201 EDE-------------------YKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 201 ~~~-------------------~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
.-. ..-.|.-|..+-+.+++.|+ +++++||..+|..+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~pa 698 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPA 698 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHH
Confidence 100 01134566777788888887 78999999999765
No 177
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.54 E-value=0.0093 Score=62.15 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=62.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEecCCCC-----------------Cch
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWASLELRGLEDE-----------------YKK 206 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~lilr~~~~~-----------------~kp 206 (256)
..++-|++.+.++.|++.|+++.++||-... |...+ ++.|+..-...++.+.+.. ..-
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~----tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~ 652 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNID----TAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARS 652 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCChH----HHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEEC
Confidence 4688999999999999999999999998653 44444 5578853222222221100 011
Q ss_pred hhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 207 VQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 207 ~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
.|+-|..+-+.+++.|+ +++++||..+|..+
T Consensus 653 sPe~K~~iV~~lq~~g~-vVam~GDGvNDapA 683 (941)
T TIGR01517 653 SPLDKQLLVLMLKDMGE-VVAVTGDGTNDAPA 683 (941)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEECCCCchHHH
Confidence 34567778888888886 78999999999855
No 178
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.53 E-value=0.013 Score=58.91 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=59.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
..++-|++.+.++.|++.|+++.++||..... +...-++.|++.+ +.+- .|+-|....+.+++.|.
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t---a~~iA~~lGI~~v---~a~~-------~PedK~~~v~~lq~~g~- 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDNRLT---AAAIAAEAGVDDF---IAEA-------TPEDKIALIRQEQAEGK- 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCEE---EcCC-------CHHHHHHHHHHHHHcCC-
Confidence 46889999999999999999999999976432 3444567898642 2211 13456666677766664
Q ss_pred EEEEEcCCccccCC
Q 025203 225 IWGVVGDQWSSFEG 238 (256)
Q Consensus 225 i~~~iGD~~sDl~g 238 (256)
++.++||..+|..+
T Consensus 510 ~VamvGDG~NDapA 523 (675)
T TIGR01497 510 LVAMTGDGTNDAPA 523 (675)
T ss_pred eEEEECCCcchHHH
Confidence 79999999999865
No 179
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.49 E-value=0.012 Score=58.95 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..++-|++.+.+++|++.|+++.++||-... |.+.+ ++.|++.+ +-+- .|+-|..+-+++++.|
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~----TA~aIA~elGI~~v---~A~~-------~PedK~~iV~~lQ~~G- 503 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNEL----TAATIAKEAGVDRF---VAEC-------KPEDKINVIREEQAKG- 503 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHH----HHHHHHHHcCCceE---EcCC-------CHHHHHHHHHHHHhCC-
Confidence 4688999999999999999999999998654 34444 56898642 2221 2456677777887776
Q ss_pred cEEEEEcCCccccCC
Q 025203 224 RIWGVVGDQWSSFEG 238 (256)
Q Consensus 224 ~i~~~iGD~~sDl~g 238 (256)
+++.++||..||-.+
T Consensus 504 ~~VaMtGDGvNDAPA 518 (673)
T PRK14010 504 HIVAMTGDGTNDAPA 518 (673)
T ss_pred CEEEEECCChhhHHH
Confidence 578899999999654
No 180
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.31 E-value=0.0065 Score=62.57 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=40.8
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHH-HHcCCeEEEEeCCCcc
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEI-KNRGVKIFLVSSRRES 175 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L-~~~G~~i~ivTnR~~~ 175 (256)
.++.++++|+||||+...+. ...+-|++.++|+.| ++.|..++++|||+..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~ 645 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRK 645 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHH
Confidence 35789999999999974421 134558999999998 7789999999999754
No 181
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.26 E-value=0.023 Score=59.15 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=60.8
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce----EEEecCCCC-----------------
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS----LELRGLEDE----------------- 203 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~----lilr~~~~~----------------- 203 (256)
..|+.|++.+.++.|++.|+++.++||..... +....++.|+..-+. ..+.+....
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~t---A~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDNKET---AEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 46889999999999999999999999986433 455556778753111 111110000
Q ss_pred CchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCC
Q 025203 204 YKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL 239 (256)
Q Consensus 204 ~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga 239 (256)
....|..|..+-+.+++.| ++++++||..+|..+-
T Consensus 612 ar~~P~~K~~iV~~lq~~g-~~va~iGDG~ND~~al 646 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQG-EIVAMTGDGVNDAPAL 646 (917)
T ss_pred EecCHHHHHHHHHHHHhcC-CeEEEecCCcchHHHH
Confidence 0012345666667777666 4778999999999764
No 182
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.20 E-value=0.024 Score=56.99 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=58.6
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
+.++-|++.+.+++|++.|+++.++||-... |.+.+ ++.|++. .+-+. .|+-|..+-+++++.|
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~----TA~aIA~elGId~---v~A~~-------~PedK~~iV~~lQ~~G- 507 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDNPL----TAAAIAAEAGVDD---FLAEA-------TPEDKLALIRQEQAEG- 507 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCCHH----HHHHHHHHcCCcE---EEccC-------CHHHHHHHHHHHHHcC-
Confidence 4577899999999999999999999997643 34444 5679864 22221 2455667777787766
Q ss_pred cEEEEEcCCccccCC
Q 025203 224 RIWGVVGDQWSSFEG 238 (256)
Q Consensus 224 ~i~~~iGD~~sDl~g 238 (256)
+++.++||..||-.+
T Consensus 508 ~~VaMtGDGvNDAPA 522 (679)
T PRK01122 508 RLVAMTGDGTNDAPA 522 (679)
T ss_pred CeEEEECCCcchHHH
Confidence 578999999999654
No 183
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.19 E-value=0.029 Score=57.15 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc----ceEEEecCC-----------------CC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW----ASLELRGLE-----------------DE 203 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~----~~lilr~~~-----------------~~ 203 (256)
..|+-|++.+.++.|++.|+++.++||..... +...-++.|+..- +.+ ..+.. --
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t---A~~IA~~lGI~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAI---AKETARRLGLGTNIYTADVL-LKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCCCCcCHHHh-cCCcchhhCCHHHHHHHHHhCCEE
Confidence 35889999999999999999999999987543 3333456788531 000 00000 00
Q ss_pred CchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 204 YKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 204 ~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
..-.|+-|..+-+.+++.|+ +++++||..||..+
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDapA 549 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAPA 549 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHHH
Confidence 11134566777788888775 78999999999654
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.13 E-value=0.0063 Score=53.60 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=37.7
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDN 183 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~ 183 (256)
+..++.|+||||++..+ ..+....++++...+.++.++++|||+-.+ ..+.
T Consensus 2 ~~ll~sDlD~Tl~~~~~--------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~---~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD--------------------------EALARLEELLEQQARPEILFVYVTGRSLES---VLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCHH--------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHH---HHHH
T ss_pred CEEEEEECCCCCcCCCH--------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHH---HHHH
Confidence 46899999999993221 122333444544557789999999998654 5677
Q ss_pred HHhcCCCC
Q 025203 184 LIHVGYHG 191 (256)
Q Consensus 184 L~~~G~~~ 191 (256)
++..+++.
T Consensus 53 ~~~~~l~~ 60 (247)
T PF05116_consen 53 LREYNLPQ 60 (247)
T ss_dssp HHHCT-EE
T ss_pred HHhCCCCC
Confidence 77777764
No 185
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.11 E-value=0.03 Score=44.69 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=57.5
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcE
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRI 225 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i 225 (256)
...|+.+.+.++.|++. +.|++.||-.... ..+.++-.|++. ..++-.. +++-|..+.++|++ -|..
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gs---l~~lae~~gi~~-~rv~a~a-------~~e~K~~ii~eLkk-~~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGS---LVQLAEFVGIPV-ERVFAGA-------DPEMKAKIIRELKK-RYEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchH---HHHHHHHcCCce-eeeeccc-------CHHHHHHHHHHhcC-CCcE
Confidence 56789999999999999 9999999965443 345556678873 3333222 24556667777765 4567
Q ss_pred EEEEcCCccccCC
Q 025203 226 WGVVGDQWSSFEG 238 (256)
Q Consensus 226 ~~~iGD~~sDl~g 238 (256)
+++|||..+|+.+
T Consensus 96 ~vmVGnGaND~la 108 (152)
T COG4087 96 VVMVGNGANDILA 108 (152)
T ss_pred EEEecCCcchHHH
Confidence 8899999999765
No 186
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.10 E-value=0.034 Score=57.55 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCC----------------Cchhh
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDE----------------YKKVQ 208 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~----------------~kp~~ 208 (256)
..|+-|++.+.++.|++.|+++.++||-.... +...=++.|+.. ...+...+-+. ..-.|
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t---A~aIA~~lGI~~-~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~P 588 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIV---TARICQEVGIDA-NDFLLGADIEELSDEELARELRKYHIFARLTP 588 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCC-CCeeecHhhhhCCHHHHHHHhhhCeEEEECCH
Confidence 46889999999999999999999999976432 333346678852 12221111000 00124
Q ss_pred hhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 209 QYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 209 ~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
+-|..+-+.+++.|+ +++++||..+|..+
T Consensus 589 e~K~~iV~~lq~~G~-vVam~GDGvNDapA 617 (867)
T TIGR01524 589 MQKSRIIGLLKKAGH-TVGFLGDGINDAPA 617 (867)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCcccHHH
Confidence 566777788888775 78899999999765
No 187
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.06 E-value=0.035 Score=57.67 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=60.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCC----------------CCchhh
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLED----------------EYKKVQ 208 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~----------------~~kp~~ 208 (256)
..|+-|++.+.++.|++.|+++.++||-.... +...-++.|+.. +..+...+-+ -..-.|
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t---A~~IA~~lGI~~-~~v~~G~el~~l~~~el~~~~~~~~VfAr~sP 623 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELV---AAKVCHEVGLDA-GEVLIGSDIETLSDDELANLAERTTLFARLTP 623 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCc-cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCH
Confidence 46889999999999999999999999976532 333446678852 1221111100 001134
Q ss_pred hhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 209 QYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 209 ~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
+-|..+-+.+++.|+ +++++||..||..+
T Consensus 624 e~K~~IV~~Lq~~G~-vVam~GDGvNDaPA 652 (902)
T PRK10517 624 MHKERIVTLLKREGH-VVGFMGDGINDAPA 652 (902)
T ss_pred HHHHHHHHHHHHCCC-EEEEECCCcchHHH
Confidence 567778888887774 78999999999755
No 188
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.04 E-value=0.043 Score=52.52 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHH
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSY 179 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~ 179 (256)
.+..+++.|+|+|+||.-.. ....+..+-..+ ..+..+++..-.+++..|+++|+-++++|-..+.-
T Consensus 218 ~g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d--- 284 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD--- 284 (574)
T ss_pred hCcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh---
Confidence 45668999999999998743 112111111111 01346778888999999999999999999876543
Q ss_pred HHHHHHhcCCCCcceEEEecCCCCC-chhhhhh-HHHHHHHHhc--CCcEEEEEcCCcc
Q 025203 180 TVDNLIHVGYHGWASLELRGLEDEY-KKVQQYK-AQVRKRLVKE--GYRIWGVVGDQWS 234 (256)
Q Consensus 180 T~~~L~~~G~~~~~~lilr~~~~~~-kp~~~~K-~~~r~~l~~~--g~~i~~~iGD~~s 234 (256)
..+-.+++ .+.+++.++... +-.-..| +.+|+..++. |.+-.+++.|++-
T Consensus 285 a~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ 338 (574)
T COG3882 285 AKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPA 338 (574)
T ss_pred HHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHH
Confidence 33333332 344666554210 0011112 3455554544 5666889999974
No 189
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.01 E-value=0.012 Score=50.09 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=49.0
Q ss_pred ccCCCCCcEEEEecCCCccCCh-HHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 98 SLAGDGKDAWIFDVDDTLLSTI-PYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 98 ~~~~~~~~avvfDiDgTlldn~-~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
.+...+++.+|+||||||++.. +. + ....-.-|++.+||+.+.+ .+.|+|-|......
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~~~--------~------------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y 73 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRSPA--------E------------TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW 73 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccccC--------C------------CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH
Confidence 3345678999999999999742 10 0 1123466999999999998 79999999988655
Q ss_pred HHHHHHHHHhcCC
Q 025203 177 RSYTVDNLIHVGY 189 (256)
Q Consensus 177 r~~T~~~L~~~G~ 189 (256)
....+..+|.
T Consensus 74 ---a~~~l~~l~~ 83 (195)
T TIGR02245 74 ---IEIKMTELGV 83 (195)
T ss_pred ---HHHHHHHhcc
Confidence 4455555554
No 190
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=95.93 E-value=0.043 Score=57.07 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCC-----------------Cchh
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDE-----------------YKKV 207 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~-----------------~kp~ 207 (256)
..|+-|++.+.++.|++.|+++.++||-.... +...=++.|+.. ... +.+.+-. ..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t---A~aIA~~lGI~~-~~v-i~G~el~~~~~~el~~~v~~~~VfAr~s 622 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIV---TAKICREVGLEP-GEP-LLGTEIEAMDDAALAREVEERTVFAKLT 622 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCC-CCc-cchHhhhhCCHHHHHHHhhhCCEEEEeC
Confidence 46889999999999999999999999976432 333335678852 111 1111100 0113
Q ss_pred hhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 208 QQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 208 ~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
|+-|..+-+.+++.|+ +++++||..||..+
T Consensus 623 Pe~K~~iV~~Lq~~G~-vVamtGDGvNDaPA 652 (903)
T PRK15122 623 PLQKSRVLKALQANGH-TVGFLGDGINDAPA 652 (903)
T ss_pred HHHHHHHHHHHHhCCC-EEEEECCCchhHHH
Confidence 4567778888887774 78999999999754
No 191
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=95.89 E-value=0.029 Score=59.19 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=61.2
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc----------ceEEEecCCCC-----------
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW----------ASLELRGLEDE----------- 203 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~----------~~lilr~~~~~----------- 203 (256)
..|+-|++.+.++.|++.|+++.++||..... +...-++.|+..- ...++.+....
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~t---A~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPET---AKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHH---HHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 46889999999999999999999999987543 3333456787421 11233322110
Q ss_pred ------CchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 204 ------YKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 204 ------~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
..-.|.-|..+-+.+++.|+ +++++||..+|..+
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapa 760 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPS 760 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHH
Confidence 01134566677788887775 67899999999754
No 192
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.54 E-value=0.072 Score=44.94 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh---cC-----CCCcceEEEecCCCCCchhhhhhHHHHH
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH---VG-----YHGWASLELRGLEDEYKKVQQYKAQVRK 216 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~---~G-----~~~~~~lilr~~~~~~kp~~~~K~~~r~ 216 (256)
+++.+|.+.+.+++-+++|+++++-|+.+-.. ++.+-. .| |.+|++.-... ++ ....| . +
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~A----QkL~Fghs~agdL~~lfsGyfDttiG~---Kr-E~~SY-~---k 168 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA----QKLFFGHSDAGDLNSLFSGYFDTTIGK---KR-ESQSY-A---K 168 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchh----HHHhhcccccccHHhhhcceeeccccc---cc-cchhH-H---H
Confidence 57889999999999999999999999876432 221110 01 22333321111 11 01122 1 2
Q ss_pred HHHhcCC--cEEEEEcCCccccCCC-CCCCcEEEe
Q 025203 217 RLVKEGY--RIWGVVGDQWSSFEGL-PKPKRTFKL 248 (256)
Q Consensus 217 ~l~~~g~--~i~~~iGD~~sDl~ga-~~g~r~fkl 248 (256)
....-|. ..++++.|++.-+.++ .+|.+|..+
T Consensus 169 Ia~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~ 203 (229)
T COG4229 169 IAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLA 203 (229)
T ss_pred HHHhcCCCchheEEecCCHHHHHHHHhcchheeee
Confidence 2233343 4689999999999876 478887766
No 193
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.092 Score=53.32 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce----EEEecCC-CC----------------
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS----LELRGLE-DE---------------- 203 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~---------------- 203 (256)
..||.|++.+.++.+++.|++|..+||-.... .+..-++.|+...++ ..+.+.. +.
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T---A~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vF 658 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNKET---AEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVF 658 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHH---HHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEE
Confidence 37999999999999999999999999987543 344446678765433 2222221 10
Q ss_pred CchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 204 YKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 204 ~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
..-.|..|..+-+.|++.| +++.+-||..+|--+
T Consensus 659 aR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApA 692 (972)
T KOG0202|consen 659 ARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPA 692 (972)
T ss_pred EecCchhHHHHHHHHHhcC-CEEEecCCCccchhh
Confidence 0113467778888888766 799999999999755
No 194
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=95.01 E-value=0.046 Score=50.91 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccH----
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLR---- 177 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r---- 177 (256)
.+.+.+.||+|||+++|.+--. | +-++..| ...+|.+..=++.|.+.|++++|.||.....|
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~v---f---~~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~ 138 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGKV---F---PKGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLE 138 (422)
T ss_pred CCcceEEEecCCceeecCCcce---e---eccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcch
Confidence 4568999999999999974210 0 0112223 45567777778899999999999999764222
Q ss_pred -----HHHHHHHHhcCCCCcceEEEec-CCCCCchhhhhhHHHHHHHHhcCCcE----EEEEcCCcc
Q 025203 178 -----SYTVDNLIHVGYHGWASLELRG-LEDEYKKVQQYKAQVRKRLVKEGYRI----WGVVGDQWS 234 (256)
Q Consensus 178 -----~~T~~~L~~~G~~~~~~lilr~-~~~~~kp~~~~K~~~r~~l~~~g~~i----~~~iGD~~s 234 (256)
......+.+.|.|. .++... .+.-+||..--- +-++.+...+++| ..++||--.
T Consensus 139 ~~~f~~Ki~~i~anl~vPi--~~~~A~~~~~yRKP~tGMw-e~~~~~~nd~~~Isek~s~fvgdaag 202 (422)
T KOG2134|consen 139 LEEFKKKIKAIVANLGVPI--QLLAAIIKGKYRKPSTGMW-EFLKRLENDSVEISEKASIFVGDAAG 202 (422)
T ss_pred HHHHHHHHHHHHHhcCCce--EEeeeccCCcccCcchhHH-HHHHHHhhccceeeechhhhhhhhcc
Confidence 22334455677773 222222 123345533111 1223334456654 346777543
No 195
>PLN02645 phosphoglycolate phosphatase
Probab=94.95 E-value=0.014 Score=53.02 Aligned_cols=90 Identities=14% Similarity=-0.012 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCC----CCCchhhhhhHHHHHHHHhcC--CcEEE
Q 025203 154 NLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLE----DEYKKVQQYKAQVRKRLVKEG--YRIWG 227 (256)
Q Consensus 154 ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~----~~~kp~~~~K~~~r~~l~~~g--~~i~~ 227 (256)
...+.|+.++-..+++||++.... ....+...|...+...+....+ .-+||.+...... ++..| .+.++
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~--~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a---~~~~~~~~~~~~ 251 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTH--LTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYL---ANKFGIEKSQIC 251 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCC--CCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHH---HHHcCCCcccEE
Confidence 344455544446899999886321 0111222333322222222222 1247776443333 33334 34599
Q ss_pred EEcCCc-cccCCC-CCCCcEEEe
Q 025203 228 VVGDQW-SSFEGL-PKPKRTFKL 248 (256)
Q Consensus 228 ~iGD~~-sDl~ga-~~g~r~fkl 248 (256)
+|||++ +|+.+| .+|.+++.+
T Consensus 252 ~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 252 MVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred EEcCCcHHHHHHHHHcCCCEEEE
Confidence 999998 999998 478887766
No 196
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=94.94 E-value=0.025 Score=49.07 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=27.7
Q ss_pred EEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcC-CeEEEEeCCCc
Q 025203 108 IFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRG-VKIFLVSSRRE 174 (256)
Q Consensus 108 vfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G-~~i~ivTnR~~ 174 (256)
+||.||||..-.+. ...+.+.|++.++|+.|.+.. ..++++|||+.
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~ 47 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRSL 47 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-H
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCH
Confidence 58999999984321 134678899999999999874 48999999985
No 197
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.13 Score=53.69 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=63.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcc--eEEEecCCCCC-----------------
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWA--SLELRGLEDEY----------------- 204 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~--~lilr~~~~~~----------------- 204 (256)
..||-|++.+.++.|++.|+++..+||-... |..+. ++.|+..-. .+++.+..-..
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~----TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfA 620 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVE----TAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFA 620 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHH----HHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEE
Confidence 4789999999999999999999999997543 44444 557876432 23444332110
Q ss_pred chhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 205 KKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 205 kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
.-.|.-|..+-+.+++.|+ +++++||..||.-+
T Consensus 621 RvsP~qK~~IV~~lq~~g~-vVamtGDGvNDapA 653 (917)
T COG0474 621 RVSPEQKARIVEALQKSGH-VVAMTGDGVNDAPA 653 (917)
T ss_pred EcCHHHHHHHHHHHHhCCC-EEEEeCCCchhHHH
Confidence 1134567778888888864 78999999999865
No 198
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.12 Score=52.75 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
.|.-++.+=+||++.--.. -..+..|++...++.|++.|++++++||-.... ..
T Consensus 701 ~g~tvv~v~vn~~l~gv~~-----------------------l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a---A~ 754 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFA-----------------------LEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA---AR 754 (951)
T ss_pred cCceEEEEEECCEEEEEEE-----------------------eccccchhHHHHHHHHHhcCceEEEEcCCCHHH---HH
Confidence 3556888888888776221 135677999999999999999999999976432 33
Q ss_pred HHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCccccCC
Q 025203 182 DNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEG 238 (256)
Q Consensus 182 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~g 238 (256)
..=++.|++. + +.+.. |.-|.+..+++++.| ..+.+|||..||--+
T Consensus 755 svA~~VGi~~---V--~aev~-----P~~K~~~Ik~lq~~~-~~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 755 SVAQQVGIDN---V--YAEVL-----PEQKAEKIKEIQKNG-GPVAMVGDGINDAPA 800 (951)
T ss_pred HHHHhhCcce---E--EeccC-----chhhHHHHHHHHhcC-CcEEEEeCCCCccHH
Confidence 3335578542 2 22211 234566778887766 578899999998654
No 199
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=94.38 E-value=0.1 Score=46.25 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHHHHhccccc-C----CCCCcEEEEecCCCccCCh--HHHHHhccCCCCCCHHHHHHHHHhcC---
Q 025203 76 SQYKADSQRAAEEVKLYLSGCCSL-A----GDGKDAWIFDVDDTLLSTI--PYFKKHGFGGERLNASSWEAWMKESK--- 145 (256)
Q Consensus 76 ~~Y~~d~~~~~~~a~~y~~~~~~~-~----~~~~~avvfDiDgTlldn~--~~~~~~~~g~~~~~~~~~~~wv~~~~--- 145 (256)
+....|+.++++....-. .++.. . .+..--|.||=|++|.|.. ..|++.+ -+.|.+......
T Consensus 89 San~~DV~~Ai~~G~~Aa-~v~~~~~~~~~~~~qlRIAFDgDaVLfsDesE~vy~~~G-------L~~F~~~E~~~a~~P 160 (264)
T PF06189_consen 89 SANEDDVQEAIDAGIPAA-TVLPSPPDDDESDDQLRIAFDGDAVLFSDESERVYQEQG-------LEAFHEHEKENADKP 160 (264)
T ss_pred eCCHHHHHHHHHcCCCcE-EeecCCCCCCCCCCceEEEEcCCeEeecCcchHhHHhcc-------HHHHHHHHHHhccCC
Confidence 345667777765443221 11111 1 1334589999999999864 3333322 233444433321
Q ss_pred --CcchHHHHHHHHHHHHc------CCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHH
Q 025203 146 --APALEHTLNLFHEIKNR------GVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKR 217 (256)
Q Consensus 146 --~~~~pg~~ell~~L~~~------G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~ 217 (256)
.-|+..-+.-|.+++++ =+++++||.|+...-+-.++.|+.-|+..=+..+|.+-+ |..+.+.
T Consensus 161 l~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~---------K~~vL~~ 231 (264)
T PF06189_consen 161 LPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLP---------KGPVLKA 231 (264)
T ss_pred CcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCc---------hhHHHHh
Confidence 23555666677777765 378999999987655668999999999843455666532 2334443
Q ss_pred HHhcCCcEEEEEcCCccccCCCCCCCcEEEec
Q 025203 218 LVKEGYRIWGVVGDQWSSFEGLPKPKRTFKLP 249 (256)
Q Consensus 218 l~~~g~~i~~~iGD~~sDl~ga~~g~r~fklP 249 (256)
+ +.-++++||..=++++..+.-+-.+|
T Consensus 232 ~-----~phIFFDDQ~~H~~~a~~~vps~hVP 258 (264)
T PF06189_consen 232 F-----RPHIFFDDQDGHLESASKVVPSGHVP 258 (264)
T ss_pred h-----CCCEeecCchhhhhHhhcCCCEEecc
Confidence 3 34568999999888887666666666
No 200
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=94.28 E-value=0.19 Score=48.57 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=55.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
..++.|++.+.++.|++.|+++.++||..+.. ...+ +..|+ + .. -.+..|...-+.+++.|
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~----a~~ia~~lgi--~------~~-----~~p~~K~~~v~~l~~~g- 406 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLT----AKAIAKELGI--F------AR-----VTPEEKAALVEALQKKG- 406 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH----HHHHHHHcCc--e------ec-----cCHHHHHHHHHHHHHCC-
Confidence 35788999999999999999999999987643 3333 34565 1 00 12456666666777767
Q ss_pred cEEEEEcCCccccCC
Q 025203 224 RIWGVVGDQWSSFEG 238 (256)
Q Consensus 224 ~i~~~iGD~~sDl~g 238 (256)
..+.++||..+|..+
T Consensus 407 ~~v~~vGDg~nD~~a 421 (499)
T TIGR01494 407 RVVAMTGDGVNDAPA 421 (499)
T ss_pred CEEEEECCChhhHHH
Confidence 458899999999854
No 201
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=94.06 E-value=0.043 Score=52.60 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHV 187 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~ 187 (256)
-|....+|+.|++.|.++|++||.+-...+...+.+-..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 478899999999999999999999887766666666433
No 202
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=93.98 E-value=0.16 Score=53.80 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+.++-|++.+.++.|++.|+++.++||..... +...-++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~T---A~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNPLT---AVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCC
Confidence 46889999999999999999999999987543 22233556773
No 203
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.082 Score=48.81 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
-|..+.++.+|+++|.++|++||.|....+.-+.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~ 275 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMR 275 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCce
Confidence 3688999999999999999999999765433333
No 204
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.91 E-value=0.091 Score=53.94 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=44.9
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR-GVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G~~i~ivTnR~~~~r~~T 180 (256)
.++.+++||.||||..-.+. +-+ ...+.+-|++.++|+.|.+. +..|+|||||+... .
T Consensus 505 a~~rll~LDyDGTL~~~~~~---------~~~---------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~---L 563 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNS---------QIK---------EMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI---L 563 (797)
T ss_pred ccCeEEEEecCccccCCCCC---------ccc---------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH---H
Confidence 34679999999999953210 000 02256779999999999876 78999999997543 4
Q ss_pred HHHHHh
Q 025203 181 VDNLIH 186 (256)
Q Consensus 181 ~~~L~~ 186 (256)
.+++..
T Consensus 564 ~~~~~~ 569 (797)
T PLN03063 564 DKNFGE 569 (797)
T ss_pred HHHhCC
Confidence 555543
No 205
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.61 E-value=0.12 Score=53.78 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=46.0
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR-GVKIFLVSSRRESLRSYT 180 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G~~i~ivTnR~~~~r~~T 180 (256)
.++.+++||.||||..-.+.-.. .-.-+....+.+-|+++++|+.|.+. +..|+|||||+... .
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~------------~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~---L 653 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGR------------RGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV---L 653 (934)
T ss_pred ccceEEEEecCceeccCCCCccc------------ccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH---H
Confidence 35679999999999974321000 00000111355779999999999876 78999999998543 4
Q ss_pred HHHHHh
Q 025203 181 VDNLIH 186 (256)
Q Consensus 181 ~~~L~~ 186 (256)
.++|..
T Consensus 654 e~~fg~ 659 (934)
T PLN03064 654 DENFGE 659 (934)
T ss_pred HHHhCC
Confidence 555544
No 206
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=93.24 E-value=0.055 Score=38.39 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=29.8
Q ss_pred CchhhhhhHHHHHHHHhcCC--cEEEEEcCC-ccccCCCC-CCCcEEEecC
Q 025203 204 YKKVQQYKAQVRKRLVKEGY--RIWGVVGDQ-WSSFEGLP-KPKRTFKLPN 250 (256)
Q Consensus 204 ~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~-~sDl~ga~-~g~r~fklPn 250 (256)
+||.+...... ++..+. .-+++|||+ .+|+.+|+ +|.+++.+..
T Consensus 3 gKP~p~~~~~a---~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 3 GKPSPGMLEQA---LKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp STTSHHHHHHH---HHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred CCCcHHHHHHH---HHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 46766443333 333343 459999999 99999984 7888887754
No 207
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.77 E-value=0.06 Score=46.90 Aligned_cols=46 Identities=17% Similarity=0.001 Sum_probs=27.7
Q ss_pred CCchhhhhhHHHHHHHHhcCCcEEEEEcCCc-cccCCC-CCCCcEEEe
Q 025203 203 EYKKVQQYKAQVRKRLVKEGYRIWGVVGDQW-SSFEGL-PKPKRTFKL 248 (256)
Q Consensus 203 ~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~-sDl~ga-~~g~r~fkl 248 (256)
.+||.+.......+.+....-+.+++|||+. +|+.+| .+|.+++.+
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 3466664433333333111123358999998 899998 478887765
No 208
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=92.60 E-value=0.17 Score=44.40 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH-hcC-CCC-cceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI-HVG-YHG-WASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIW 226 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~-~~G-~~~-~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~ 226 (256)
+.....+..+ ++|.+ +++||.+.... +...+. ..| +-. ++...-+.....+||.+.......+.+ ....+.+
T Consensus 124 ~~l~~a~~~l-~~g~~-~i~tN~D~~~~--~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~-~~~~~~~ 198 (249)
T TIGR01457 124 EKFATATLAI-RKGAH-FIGTNGDLAIP--TERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHL-GTEREET 198 (249)
T ss_pred HHHHHHHHHH-HCCCe-EEEECCCCCCC--CCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHc-CCCcccE
Confidence 4445555555 45877 88999875331 000000 000 000 111112222334577775443333332 1234569
Q ss_pred EEEcCCc-cccCCC-CCCCcEEEecC
Q 025203 227 GVVGDQW-SSFEGL-PKPKRTFKLPN 250 (256)
Q Consensus 227 ~~iGD~~-sDl~ga-~~g~r~fklPn 250 (256)
++|||++ +|+.++ .+|.+++.+..
T Consensus 199 ~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 199 LMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred EEECCCchhhHHHHHHcCCcEEEEcC
Confidence 9999996 899998 47888877743
No 209
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=91.47 E-value=3.1 Score=40.56 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh-cCCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH-VGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~-~G~~~ 191 (256)
..|.+.+ .++++|.. +++|+.++.. .+..++. +|++.
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~---Vepfa~~~LGid~ 148 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIM---VEPFVKTFLGADK 148 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHH---HHHHHHHcCCCCE
Confidence 3455444 44567754 9999988654 4566655 68763
No 210
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=90.43 E-value=0.41 Score=41.82 Aligned_cols=98 Identities=11% Similarity=0.214 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCc--ccHHHHHHHHHhcCCCC---c-ceEEEecCCCCCchhhhhhHHHHHHHHh
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRE--SLRSYTVDNLIHVGYHG---W-ASLELRGLEDEYKKVQQYKAQVRKRLVK 220 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~--~~r~~T~~~L~~~G~~~---~-~~lilr~~~~~~kp~~~~K~~~r~~l~~ 220 (256)
+.++++.++++.++..+..+.++|+.+. ..+......++..|+.. + ..+-+...+ ..|+ ..+++.++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~-~~K~-----~~l~~l~~~ 210 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKG-NSKG-----KRLTQWVEA 210 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCC-CChH-----HHHHHHHHH
Confidence 3456777888878777776777776543 12222333334445431 0 001111111 1121 345555666
Q ss_pred cCCc--EEEEEcCCccccCCCCCCCcEEEecC
Q 025203 221 EGYR--IWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 221 ~g~~--i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.|.. .+++|||+.+|+.........+..-|
T Consensus 211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgn 242 (272)
T PRK10530 211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAMGN 242 (272)
T ss_pred cCCCHHHeEEeCCChhhHHHHHhcCceEEecC
Confidence 6654 59999999999988642223444444
No 211
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=90.24 E-value=1.3 Score=33.73 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=47.8
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCC----Cchhh-hhhHH-HHHHHHhcCCcEEEEEcCCc-cccC
Q 025203 165 KIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDE----YKKVQ-QYKAQ-VRKRLVKEGYRIWGVVGDQW-SSFE 237 (256)
Q Consensus 165 ~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~----~kp~~-~~K~~-~r~~l~~~g~~i~~~iGD~~-sDl~ 237 (256)
++++||+.+........+.|+..|||. ..+++++-+.. -++.. .+|.. +++.+...-....+.|||+- .|..
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dpe 79 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPE 79 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHH
Confidence 478999999988888899999999984 55777765321 11122 36643 44444444445688999984 6654
No 212
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=87.54 E-value=5.1 Score=34.24 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHHHHH-HHHcCCeEEEEeCCCc-ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhc--CCcE
Q 025203 150 EHTLNLFHE-IKNRGVKIFLVSSRRE-SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKE--GYRI 225 (256)
Q Consensus 150 pg~~ell~~-L~~~G~~i~ivTnR~~-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~--g~~i 225 (256)
..++++.+. .++..--.+++|||.+ ...+...+.|...|+. ++.++|++.+....+...||......+... ..+.
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~-Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~~~e 135 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE-FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYKNAEE 135 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC-ccEEEeCcccccCccccHHHHHHHHHHHHhcCCCCE
Confidence 556666654 4455777789999997 4455566677888888 788999987444456678998777766542 3356
Q ss_pred EEEEcCCccccC
Q 025203 226 WGVVGDQWSSFE 237 (256)
Q Consensus 226 ~~~iGD~~sDl~ 237 (256)
+-+..|+..=+.
T Consensus 136 I~IYeDR~~hvk 147 (197)
T PF10307_consen 136 IRIYEDRPKHVK 147 (197)
T ss_pred EEEEcCCHHHHH
Confidence 778889876443
No 213
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=86.96 E-value=1 Score=40.88 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc----eEEEecCCCCCchhhhhhHHHHHHHHh---cC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA----SLELRGLEDEYKKVQQYKAQVRKRLVK---EG 222 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~----~lilr~~~~~~kp~~~~K~~~r~~l~~---~g 222 (256)
+.....+++|++=|+ .|++||++...- -.....-.|.-.+- ...-|.+..-+||.+. +++.+.+ .+
T Consensus 168 ~KL~kA~~yLqnP~c-lflatn~D~~~p--~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~----m~~~l~~~~~i~ 240 (306)
T KOG2882|consen 168 PKLMKALNYLQNPGC-LFLATNRDATTP--PTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTF----MFEYLLEKFNID 240 (306)
T ss_pred HHHHHHHHHhCCCCc-EEEeccCccccC--CCCCeeccCCccHHHHHHHHhcCCCeecCCCCHH----HHHHHHHHcCCC
Confidence 555667888887776 678999986431 00011111111111 1122333333455443 3333322 23
Q ss_pred CcEEEEEcCCc-cccCCC-CCCCcEEE
Q 025203 223 YRIWGVVGDQW-SSFEGL-PKPKRTFK 247 (256)
Q Consensus 223 ~~i~~~iGD~~-sDl~ga-~~g~r~fk 247 (256)
..-+++|||+. +||.=| ..|.+|..
T Consensus 241 psRt~mvGDRL~TDIlFG~~~G~~TLL 267 (306)
T KOG2882|consen 241 PSRTCMVGDRLDTDILFGKNCGFKTLL 267 (306)
T ss_pred cceEEEEcccchhhhhHhhccCcceEE
Confidence 44599999998 899844 45666543
No 214
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.49 E-value=1.6 Score=38.61 Aligned_cols=86 Identities=19% Similarity=0.068 Sum_probs=44.7
Q ss_pred HHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC----CcceEEEecCCCCCchhhhhhHHHHHHHHhcC--C-cEEEEEc
Q 025203 158 EIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH----GWASLELRGLEDEYKKVQQYKAQVRKRLVKEG--Y-RIWGVVG 230 (256)
Q Consensus 158 ~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~----~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g--~-~i~~~iG 230 (256)
.++..++...++-..+....+...+.++..|+. .+..-++... . |. ..++..++..| . ..+++||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~-~--Kg-----~al~~l~~~~~i~~~~~v~~~G 214 (273)
T PRK00192 143 LAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGGG-D--KG-----KAVRWLKELYRRQDGVETIALG 214 (273)
T ss_pred HHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCCC-C--HH-----HHHHHHHHHHhccCCceEEEEc
Confidence 344556665555122233445566777766664 1111122221 1 11 22333333333 4 6799999
Q ss_pred CCccccCCCCCCCcEEEecCC
Q 025203 231 DQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 231 D~~sDl~ga~~g~r~fklPnp 251 (256)
|+.+|+.........+.+.|.
T Consensus 215 Ds~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 215 DSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred CChhhHHHHHhCCeeEEeCCC
Confidence 999999886544455666554
No 215
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.41 E-value=2 Score=36.38 Aligned_cols=37 Identities=8% Similarity=-0.169 Sum_probs=24.4
Q ss_pred HHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEec
Q 025203 213 QVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLP 249 (256)
Q Consensus 213 ~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklP 249 (256)
+++..++..|. +.+++|||+.+|+.........|.||
T Consensus 183 al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~~ 221 (221)
T TIGR02463 183 AANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVIK 221 (221)
T ss_pred HHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEeC
Confidence 34444555564 46999999999998764333555554
No 216
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=86.22 E-value=1.7 Score=37.32 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=33.3
Q ss_pred CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCC
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~ 173 (256)
.-.++||+||||.-.. ....|.+.++|+.|+++ +.|.+|-|..
T Consensus 11 ~~l~lfdvdgtLt~~r--------------------------~~~~~e~~~~l~~lr~~-v~ig~VggsD 53 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPPR--------------------------QKVTPEMLEFLQKLRKK-VTIGFVGGSD 53 (252)
T ss_pred ceEEEEecCCcccccc--------------------------ccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence 4478999999998732 45568889999987765 7788887765
No 217
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=85.46 E-value=7.8 Score=34.27 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEec-----C-C----
Q 025203 132 LNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRG-----L-E---- 201 (256)
Q Consensus 132 ~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~-----~-~---- 201 (256)
++.....+-+........+|+.+|++.|+++++++.+.|+.- -+.....|++.|...-.--+++. + +
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGl---gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~g 151 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGL---GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVG 151 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEE---HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEE
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCc---HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEee
Confidence 455567777777888999999999999999999999999874 34577788877643211111111 1 1
Q ss_pred CCCch--hhhhhHH-------HHHHHHhcCCcEEEEEcCCccccCCCC
Q 025203 202 DEYKK--VQQYKAQ-------VRKRLVKEGYRIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 202 ~~~kp--~~~~K~~-------~r~~l~~~g~~i~~~iGD~~sDl~ga~ 240 (256)
.+. | ++..|.+ ..+.+ .+.+-++.+||+..|+..+.
T Consensus 152 F~~-~lIH~~NKn~~~l~~~~~~~~~--~~R~NvlLlGDslgD~~Ma~ 196 (246)
T PF05822_consen 152 FKG-PLIHTFNKNESALEDSPYFKQL--KKRTNVLLLGDSLGDLHMAD 196 (246)
T ss_dssp E-S-S---TT-HHHHHHTTHHHHHCT--TT--EEEEEESSSGGGGTTT
T ss_pred cCC-CceEEeeCCcccccCchHHHHh--ccCCcEEEecCccCChHhhc
Confidence 001 1 2222321 12222 23456889999999998765
No 218
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=85.14 E-value=3.4 Score=40.40 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY 223 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~ 223 (256)
+....||.+|=+.+|++.|++.+.+||-.+- |.... +.+|.++| +.. .+ |+-|-...++-++ +-
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN~~----TAa~IA~EAGVDdf----iAe----at--PEdK~~~I~~eQ~-~g 509 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDNPL----TAAAIAAEAGVDDF----IAE----AT--PEDKLALIRQEQA-EG 509 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCCHH----HHHHHHHHhCchhh----hhc----CC--hHHHHHHHHHHHh-cC
Confidence 3445699999999999999999999997653 45544 45788763 111 12 2333333333233 34
Q ss_pred cEEEEEcCCccccCC
Q 025203 224 RIWGVVGDQWSSFEG 238 (256)
Q Consensus 224 ~i~~~iGD~~sDl~g 238 (256)
+.+.+.||.-+|--+
T Consensus 510 rlVAMtGDGTNDAPA 524 (681)
T COG2216 510 RLVAMTGDGTNDAPA 524 (681)
T ss_pred cEEEEcCCCCCcchh
Confidence 789999999999754
No 219
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=85.13 E-value=7.6 Score=36.50 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHH
Q 025203 80 ADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEI 159 (256)
Q Consensus 80 ~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L 159 (256)
.|+..+.|.|+...-. +..+.+-|-||=|+||.+-- ..+. ...+.+|-.+ .|
T Consensus 127 NDvR~ILN~AQi~al~----~~~~L~LvTFDgDvTLY~DG----------~sl~----------~d~pvi~~ii----~L 178 (408)
T PF06437_consen 127 NDVRHILNTAQIMALA----KNYGLKLVTFDGDVTLYEDG----------ASLE----------PDNPVIPRII----KL 178 (408)
T ss_pred HHHHHHHHHHHHHHhc----ccCCceEEEEcCCcccccCC----------CCCC----------CCchHHHHHH----HH
Confidence 4777777777654321 12367899999999999843 2221 1234444444 56
Q ss_pred HHcCCeEEEEeCCCcc
Q 025203 160 KNRGVKIFLVSSRRES 175 (256)
Q Consensus 160 ~~~G~~i~ivTnR~~~ 175 (256)
-++|++|+|||.-...
T Consensus 179 L~~gv~VgIVTAAGY~ 194 (408)
T PF06437_consen 179 LRRGVKVGIVTAAGYP 194 (408)
T ss_pred HhcCCeEEEEeCCCCC
Confidence 6789999999987643
No 220
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=85.04 E-value=0.55 Score=39.05 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCcEEEEEcCCcc
Q 025203 212 AQVRKRLVKEGYRIWGVVGDQWS 234 (256)
Q Consensus 212 ~~~r~~l~~~g~~i~~~iGD~~s 234 (256)
.+..+.|++.|+++.+.-||+..
T Consensus 133 ~~~l~~L~~~Gi~~~i~TGD~~~ 155 (215)
T PF00702_consen 133 KEALQELKEAGIKVAILTGDNES 155 (215)
T ss_dssp HHHHHHHHHTTEEEEEEESSEHH
T ss_pred hhhhhhhhccCcceeeeeccccc
Confidence 45667788889999999999754
No 221
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=82.63 E-value=5.1 Score=42.58 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+.++-|++.+.++.|++.|+++.++||-..
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~ 658 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKV 658 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcH
Confidence 468889999999999999999999999653
No 222
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.63 E-value=9.4 Score=31.54 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-C-CeEEEEeCCCcc----c
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR-G-VKIFLVSSRRES----L 176 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G-~~i~ivTnR~~~----~ 176 (256)
+.+|+|||=|.++.-- ++.+-| |.-+.=+++++.. | ..++++||.... .
T Consensus 42 ~ikavVlDKDNcit~P-------------~~~~Iw------------p~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~ 96 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP-------------YSLAIW------------PPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDH 96 (190)
T ss_pred CceEEEEcCCCeeeCC-------------cccccC------------chhHHHHHHHHHHhCcccEEEEecCcCccccCC
Confidence 6789999999998652 222222 3333334445543 3 568888886432 1
Q ss_pred HHHHHHHHH-hcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHh----cCCcEEEEEcCCc-cccCCCC
Q 025203 177 RSYTVDNLI-HVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVK----EGYRIWGVVGDQW-SSFEGLP 240 (256)
Q Consensus 177 r~~T~~~L~-~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~----~g~~i~~~iGD~~-sDl~ga~ 240 (256)
-..-.+.|+ +.|++ ++|-.. .||.-. .++...+-. ..-..+++|||++ +||.-|+
T Consensus 97 d~s~Ak~le~k~gIp-----VlRHs~--kKP~ct--~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN 157 (190)
T KOG2961|consen 97 DDSKAKALEAKIGIP-----VLRHSV--KKPACT--AEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYAN 157 (190)
T ss_pred chHHHHHHHHhhCCc-----eEeecc--cCCCcc--HHHHHHHhCCcccCChhHeEEEccchhhhHhhhh
Confidence 112344554 46887 344322 222210 111121111 1123588999997 8998764
No 223
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=82.52 E-value=1.6 Score=39.90 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=20.0
Q ss_pred cEEEEEcCCc-cccCCCC-CCCcEEEe
Q 025203 224 RIWGVVGDQW-SSFEGLP-KPKRTFKL 248 (256)
Q Consensus 224 ~i~~~iGD~~-sDl~ga~-~g~r~fkl 248 (256)
+.+++|||++ +|+.+|. +|.+++.+
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV 290 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLV 290 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEe
Confidence 4699999998 9999984 67776654
No 224
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.33 E-value=5.7 Score=38.28 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=64.2
Q ss_pred HHHHHHHHHh----cCC--cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce-EEEecCCCCCch
Q 025203 134 ASSWEAWMKE----SKA--PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWAS-LELRGLEDEYKK 206 (256)
Q Consensus 134 ~~~~~~wv~~----~~~--~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~-lilr~~~~~~kp 206 (256)
+.+|.+.+.. ++. -|.....++++++.+.|.+|+++|.---. -+...+.|...|++...- ++++++.--.|.
T Consensus 80 p~~f~~~~~lEI~tEKevLypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~Kn 158 (635)
T COG5610 80 PLSFQELMKLEINTEKEVLYPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKN 158 (635)
T ss_pred cHHHHHHhceeeccceeEeeccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcc
Confidence 3456666542 233 34556789999999999999999986432 245677888999987653 667665422221
Q ss_pred -hhhhhHHHHHHHHhcCCcEEEEEcCCc-cccCCC
Q 025203 207 -VQQYKAQVRKRLVKEGYRIWGVVGDQW-SSFEGL 239 (256)
Q Consensus 207 -~~~~K~~~r~~l~~~g~~i~~~iGD~~-sDl~ga 239 (256)
...+| .+. .++.-...-|+-+||+| .|...+
T Consensus 159 Sg~LFk-~Vl-k~EnVd~~~w~H~GDN~~aD~l~p 191 (635)
T COG5610 159 SGNLFK-AVL-KLENVDPKKWIHCGDNWVADYLKP 191 (635)
T ss_pred cchHHH-HHH-hhcCCChhheEEecCchhhhhcCc
Confidence 11222 221 12222344599999997 576654
No 225
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=80.85 E-value=3 Score=38.02 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
..+|...+++++|+++|+++++...
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 3568889999999999999987654
No 226
>PRK10444 UMP phosphatase; Provisional
Probab=79.29 E-value=1.7 Score=38.27 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=29.7
Q ss_pred CCchhhhhhHHHHHHHHhcCCcEEEEEcCCc-cccCCC-CCCCcEEEec
Q 025203 203 EYKKVQQYKAQVRKRLVKEGYRIWGVVGDQW-SSFEGL-PKPKRTFKLP 249 (256)
Q Consensus 203 ~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~-sDl~ga-~~g~r~fklP 249 (256)
.+||.+.......+.+ ....+.+++|||+. +|+.+| .+|.+++.+.
T Consensus 172 ~gKP~~~~~~~~~~~~-~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 172 VGKPSPWIIRAALNKM-QAHSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred cCCCCHHHHHHHHHHc-CCCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 4577664433333322 12245699999997 899988 4788887763
No 227
>PLN03190 aminophospholipid translocase; Provisional
Probab=79.06 E-value=9 Score=41.32 Aligned_cols=30 Identities=7% Similarity=0.350 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
..++-+++.+.++.|++.|+++.++||-..
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~~ 753 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQ 753 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCH
Confidence 458899999999999999999999999653
No 228
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=76.52 E-value=11 Score=29.82 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=41.5
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCcc
Q 025203 165 KIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWS 234 (256)
Q Consensus 165 ~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~s 234 (256)
+|||++||....+......|++.|+.. +++......+++.. ..+.+.+...++-|+++-.|...
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~ep---~i~~~~~~~g~tii---e~le~~~~~~~faIvl~TpDD~~ 64 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLEP---IIWHEQPNLGQTII---EKLEEAADSVDFAIVLFTPDDIG 64 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCce---EEeecCCCCCCchH---HHHHHHhccCCEEEEEEcccccc
Confidence 589999988888888888888887753 44444333332221 33444555567778888777654
No 229
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=75.93 E-value=5.7 Score=34.46 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=28.8
Q ss_pred HHHHHHHhcC--CcEEEEEcCCccccCCCCC-CCcEEEecCC
Q 025203 213 QVRKRLVKEG--YRIWGVVGDQWSSFEGLPK-PKRTFKLPNS 251 (256)
Q Consensus 213 ~~r~~l~~~g--~~i~~~iGD~~sDl~ga~~-g~r~fklPnp 251 (256)
+++..++..| ...++++||+.+|+..... +...+.+.|.
T Consensus 171 al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 171 ALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred HHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence 4444445555 3469999999999998764 6688888885
No 230
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=75.66 E-value=3.6 Score=32.79 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHh-cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKE-SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTV 181 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~-~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~ 181 (256)
.++++.||+|=|++.-.-...- .+--.||-.+ .-.. .....++.+...|..|+++|++++++|+....+ ...
T Consensus 4 ~p~~~~fdldytiwP~~vdthl-~~pfkP~k~~----~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~--iA~ 76 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHL-DYPFKPFKCE----CGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQ--IAS 76 (144)
T ss_pred CCceeEEeccceeeeEEEEecc-cccccccccC----cccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHH--HHH
Confidence 5789999999988763211000 0001111000 0011 235678999999999999999999999876544 244
Q ss_pred HHHHhcCCC
Q 025203 182 DNLIHVGYH 190 (256)
Q Consensus 182 ~~L~~~G~~ 190 (256)
..|+.+..+
T Consensus 77 q~L~~fkvk 85 (144)
T KOG4549|consen 77 QGLETFKVK 85 (144)
T ss_pred HHHHHhccC
Confidence 455544443
No 231
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=75.49 E-value=4.1 Score=34.42 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 213 QVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 213 ~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
.++..++..|.+ .+++|||+.+|+.........|.+.|.
T Consensus 151 ~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na 191 (215)
T TIGR01487 151 GVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVANA 191 (215)
T ss_pred HHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcCCc
Confidence 455555556655 489999999999987644566666664
No 232
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=72.07 E-value=2.7 Score=37.52 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCccCChHHHHHhccCCCCCC-HHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHH
Q 025203 100 AGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLN-ASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRS 178 (256)
Q Consensus 100 ~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~-~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~ 178 (256)
...+++.+|+|+||||+.++..... .....|. +-.++.....--....|++-+|+..+-+. +.+++.|+-.+.+-.
T Consensus 85 ~~~~kk~lVLDLDeTLvHss~~~~~--~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~ 161 (262)
T KOG1605|consen 85 ATVGRKTLVLDLDETLVHSSLNLKP--IVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVYAD 161 (262)
T ss_pred ccCCCceEEEeCCCcccccccccCC--CCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHH
Confidence 4568999999999998877621110 0001110 00000000011134568888888887776 777777877776666
Q ss_pred HHHHHHHh
Q 025203 179 YTVDNLIH 186 (256)
Q Consensus 179 ~T~~~L~~ 186 (256)
.....|..
T Consensus 162 ~v~D~LD~ 169 (262)
T KOG1605|consen 162 PLLDILDP 169 (262)
T ss_pred HHHHHccC
Confidence 66677765
No 233
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=70.12 E-value=8.9 Score=29.87 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=35.2
Q ss_pred ccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEe
Q 025203 60 VVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFD 110 (256)
Q Consensus 60 ~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfD 110 (256)
+=|++....++.-+.|+++++.-.++.+.-..-.+.. ...-.+.+|||||
T Consensus 41 adp~qA~~~~~~rl~s~~~~~~q~~L~~Ayqgv~~Aw-~lgi~k~PAVVfD 90 (114)
T PF07511_consen 41 ADPQQAEAQARQRLQSPDWQQLQQQLAQAYQGVVDAW-SLGITKYPAVVFD 90 (114)
T ss_pred CChHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HhCccccCEEEEc
Confidence 4677888888999999997766665554444444443 4444678999999
No 234
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=69.63 E-value=26 Score=33.65 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.6
Q ss_pred CCCcEEEEecCCCccCChH
Q 025203 102 DGKDAWIFDVDDTLLSTIP 120 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~ 120 (256)
..++.|++|||.|..++.-
T Consensus 137 ~~~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHG 155 (448)
T ss_pred cccceEEEecccccccchh
Confidence 3468999999999988754
No 235
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=65.89 E-value=12 Score=29.03 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=32.2
Q ss_pred ccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEe
Q 025203 60 VVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFD 110 (256)
Q Consensus 60 ~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfD 110 (256)
+=|++....++..+.|.++++.-.++.+....-.+.. ...-.+.+|||||
T Consensus 42 adp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw-~lGi~k~PAVV~D 91 (113)
T TIGR03757 42 ADPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAW-QLGVTKIPAVVVD 91 (113)
T ss_pred CCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HcCCccCCEEEEc
Confidence 4578888899999999776544444433333333333 3334678999999
No 236
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=65.61 E-value=18 Score=29.53 Aligned_cols=55 Identities=7% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCC--cccHHHHHHHHH-hcCCCCcceEEEecC
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRR--ESLRSYTVDNLI-HVGYHGWASLELRGL 200 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~--~~~r~~T~~~L~-~~G~~~~~~lilr~~ 200 (256)
.....|++.+.+++|.+. +.|+++|... ....+.--+||. .+.|-.+..+++++.
T Consensus 66 nL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn 123 (180)
T COG4502 66 NLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN 123 (180)
T ss_pred hcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC
Confidence 356789999999999886 8899999873 223344456664 467766777887764
No 237
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.44 E-value=15 Score=33.37 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGY 189 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~ 189 (256)
...+|...+++++|+++|+++++...-.-......-+.+.+.|+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 34567889999999999999998775321111223455666676
No 238
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=63.57 E-value=57 Score=24.68 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHh-cCCcEEEE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVK-EGYRIWGV 228 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~-~g~~i~~~ 228 (256)
+.+.++.+.+.+.|++++ .|.. |.+.|++.|++. ..+...... +. ..+...+++ ..++.+++
T Consensus 12 ~~~~~~a~~l~~~G~~i~-AT~g-------Ta~~L~~~Gi~~--~~v~~~~~~-g~------~~i~~~i~~~g~idlVIn 74 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLF-ATGG-------TSRVLADAGIPV--RAVSKRHED-GE------PTVDAAIAEKGKFDVVIN 74 (112)
T ss_pred HHHHHHHHHHHHCCCEEE-ECcH-------HHHHHHHcCCce--EEEEecCCC-CC------cHHHHHHhCCCCEEEEEE
Confidence 677888889999999985 6654 788888888872 223332211 11 123444555 45666777
Q ss_pred EcC
Q 025203 229 VGD 231 (256)
Q Consensus 229 iGD 231 (256)
+-|
T Consensus 75 ~~~ 77 (112)
T cd00532 75 LRD 77 (112)
T ss_pred cCC
Confidence 765
No 239
>PRK12342 hypothetical protein; Provisional
Probab=63.37 E-value=1.1e+02 Score=27.17 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=43.8
Q ss_pred HHHHcCCeEEEEeCCCcccHHH-HHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCCcccc
Q 025203 158 EIKNRGVKIFLVSSRRESLRSY-TVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSF 236 (256)
Q Consensus 158 ~L~~~G~~i~ivTnR~~~~r~~-T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl 236 (256)
+|++.|.+|..+|=-+...... +.+.--.+|-+ ..+++.+....+......-..+-..+++.||+++ ..|.+-.|-
T Consensus 46 rLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD--~avli~d~~~~g~D~~ata~~La~~i~~~~~DLV-l~G~~s~D~ 122 (254)
T PRK12342 46 QLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPH--SLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLL-LFGEGSGDL 122 (254)
T ss_pred HHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCC--EEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEE-EEcCCcccC
Confidence 4556799999999887643222 22434445665 2333433222121111111234445555677764 689999998
Q ss_pred CCCC
Q 025203 237 EGLP 240 (256)
Q Consensus 237 ~ga~ 240 (256)
..+.
T Consensus 123 ~tgq 126 (254)
T PRK12342 123 YAQQ 126 (254)
T ss_pred CCCC
Confidence 7764
No 240
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=61.28 E-value=41 Score=24.77 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA 193 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~ 193 (256)
.+-....+++.++++|.++.++.-++. ..+.|+..|+..+.
T Consensus 56 gi~~L~~~~~~~~~~g~~l~l~~~~~~-----v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 56 GLGVILGRYKKIKNEGGEVIVCNVSPA-----VKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHhCCceEE
Confidence 334556778899999999997775543 57788888987543
No 241
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=61.00 E-value=6.2 Score=38.38 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh-cCCCC
Q 025203 155 LFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH-VGYHG 191 (256)
Q Consensus 155 ll~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~-~G~~~ 191 (256)
.++..++.| +++++|.-+... .+.+++. +|.+.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvm---VEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVM---VERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHH---HHHHHHHhcCCce
Confidence 455667788 999999988544 6777877 78764
No 242
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=60.90 E-value=40 Score=28.20 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc
Q 025203 83 QRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR 162 (256)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~ 162 (256)
..+.+||..++..+ +..+...+.+++||..+ .+.. .-+.+ .....+.++++.+++.
T Consensus 67 ~~~~~Qa~~f~~~~-~~~~~~~~~i~lDiE~~--~~~~----------~~~~~-----------~~~~~~~~f~~~~~~~ 122 (196)
T cd06416 67 GSAAGQVQTFLQYL-KANGIKYGTVWIDIEQN--PCQW----------SSDVA-----------SNCQFLQELVSAAKAL 122 (196)
T ss_pred CCHHHHHHHHHHHH-HhCCCceeEEEEEEecC--CCCC----------cCCHH-----------HHHHHHHHHHHHHHHh
Confidence 45667888888776 43333445677999975 1110 00111 1123457888999999
Q ss_pred CCeEEEEeCCCc
Q 025203 163 GVKIFLVSSRRE 174 (256)
Q Consensus 163 G~~i~ivTnR~~ 174 (256)
|.+++|-|++..
T Consensus 123 G~~~~iYt~~~~ 134 (196)
T cd06416 123 GLKVGIYSSQYD 134 (196)
T ss_pred CCeEEEEcCcch
Confidence 999999999864
No 243
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=60.21 E-value=37 Score=35.42 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcce--EEEecCCCCC-----------------
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL-IHVGYHGWAS--LELRGLEDEY----------------- 204 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L-~~~G~~~~~~--lilr~~~~~~----------------- 204 (256)
+.|..||+.+.++.+++.|++|-.|||-.-. |.+.. .+-|+-.-+. +.+-+...+.
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~----TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlA 720 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDNIN----TAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLA 720 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCcHH----HHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeee
Confidence 5788899999999999999999999998643 23332 2335532211 2222211110
Q ss_pred chhhhhhHHHHHHHHhcCCcEEEEEcCCccccCCC
Q 025203 205 KKVQQYKAQVRKRLVKEGYRIWGVVGDQWSSFEGL 239 (256)
Q Consensus 205 kp~~~~K~~~r~~l~~~g~~i~~~iGD~~sDl~ga 239 (256)
.+-|.-|--+-+.|++.| +++..-||.-+|--+-
T Consensus 721 RSSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPAL 754 (1034)
T KOG0204|consen 721 RSSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPAL 754 (1034)
T ss_pred cCCCchHHHHHHHHHhcC-cEEEEecCCCCCchhh
Confidence 011222333445555544 5889999999987553
No 244
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=60.12 E-value=5.5 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHhhhcccccccc
Q 025203 2 ARNSVLILAFTSLCIASALADWNILT 27 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (256)
.|+++++++++ ++.+.++|+|...+
T Consensus 2 k~i~~~~~~~~-~~~~~a~AQWvV~D 26 (55)
T PF13605_consen 2 KKILMLCVACL-LLAGPARAQWVVTD 26 (55)
T ss_pred cchHHHHHHHH-hcCCcceeEEEEeC
Confidence 34444444444 88888999997644
No 245
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=59.98 E-value=19 Score=28.99 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred EEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 106 AWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 106 avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.-++|+||.+++-... . -...-++++.+.+.|.++++.|.-... ..|++.|.
T Consensus 45 iAildL~G~~l~l~S~--------R------------------~~~~~evi~~I~~~G~PviVAtDV~p~--P~~V~Kia 96 (138)
T PF04312_consen 45 IAILDLDGELLDLKSS--------R------------------NMSRSEVIEWISEYGKPVIVATDVSPP--PETVKKIA 96 (138)
T ss_pred EEEEecCCcEEEEEee--------c------------------CCCHHHHHHHHHHcCCEEEEEecCCCC--cHHHHHHH
Confidence 5579999999984311 1 123356777889999999999997654 24666665
Q ss_pred h
Q 025203 186 H 186 (256)
Q Consensus 186 ~ 186 (256)
+
T Consensus 97 ~ 97 (138)
T PF04312_consen 97 R 97 (138)
T ss_pred H
Confidence 4
No 246
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=59.76 E-value=26 Score=37.39 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH----HcCCeEEEEeCCCcccHHHHHHHHHhcCCC--CcceEE
Q 025203 150 EHTLNLFHEIK----NRGVKIFLVSSRRESLRSYTVDNLIHVGYH--GWASLE 196 (256)
Q Consensus 150 pg~~ell~~L~----~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~--~~~~li 196 (256)
+...++++.++ ...+.++|+|||+-. .+...|+..|++ .++-+|
T Consensus 787 ~~l~~~~~~~~~~~~~~~igfv~aTGR~l~---~~~~~l~~~~lp~~~PD~lI 836 (1050)
T TIGR02468 787 QIIKNIFEAVRKERMEGSSGFILSTSMTIS---EIQSFLKSGGLNPTDFDALI 836 (1050)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCHH---HHHHHHHhCCCCCCCCCEEE
Confidence 34455566665 234788899999854 478889999998 555444
No 247
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=58.80 E-value=7.8 Score=34.74 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=26.9
Q ss_pred CCchhhhhhHHHHHHHHhcCC--cEEEEEcCCc-cccCCCC-CCCcEEEe
Q 025203 203 EYKKVQQYKAQVRKRLVKEGY--RIWGVVGDQW-SSFEGLP-KPKRTFKL 248 (256)
Q Consensus 203 ~~kp~~~~K~~~r~~l~~~g~--~i~~~iGD~~-sDl~ga~-~g~r~fkl 248 (256)
-+||.+.. .+.+++..|. ..+++|||+. +|+.+|. +|.-++.+
T Consensus 188 ~GKP~~~i---~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV 234 (269)
T COG0647 188 IGKPSPAI---YEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLV 234 (269)
T ss_pred cCCCCHHH---HHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEE
Confidence 35665533 2344444444 3688999997 9999884 56655543
No 248
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=58.38 E-value=16 Score=27.55 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=42.4
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
..+.+|||+.+.-.= | ...+....++.+.++++|++++++.-++. ..+
T Consensus 47 ~~~~vIlD~s~v~~i---------------D------------ssgi~~L~~~~~~~~~~g~~~~l~~~~~~-----v~~ 94 (117)
T PF01740_consen 47 TIKNVILDMSGVSFI---------------D------------SSGIQALVDIIKELRRRGVQLVLVGLNPD-----VRR 94 (117)
T ss_dssp SSSEEEEEETTESEE---------------S------------HHHHHHHHHHHHHHHHTTCEEEEESHHHH-----HHH
T ss_pred cceEEEEEEEeCCcC---------------C------------HHHHHHHHHHHHHHHHCCCEEEEEECCHH-----HHH
Confidence 358999999986211 1 23446678889999999999999887654 466
Q ss_pred HHHhcCCCCc
Q 025203 183 NLIHVGYHGW 192 (256)
Q Consensus 183 ~L~~~G~~~~ 192 (256)
.|.+.|+...
T Consensus 95 ~l~~~~~~~~ 104 (117)
T PF01740_consen 95 ILERSGLIDF 104 (117)
T ss_dssp HHHHTTGHHH
T ss_pred HHHHcCCChh
Confidence 6888888643
No 249
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=58.11 E-value=13 Score=27.32 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+++++.+.|.+.|++++ .|+. |.+.|++.|++. ..+.-...... .++ -...+...++..+.+.+++.-
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~g-------Ta~~L~~~Gi~~-~~v~~~~~~~~-~~~--g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATEG-------TAKFLKEHGIEV-TEVVNKIGEGE-SPD--GRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEHH-------HHHHHHHTT--E-EECCEEHSTG--GGT--HCHHHHHHHHTTSEEEEEEE-
T ss_pred CHHHHHHHHHHCCCEEE-EChH-------HHHHHHHcCCCc-eeeeeecccCc-cCC--chhHHHHHHHcCCeEEEEEeC
Confidence 46788999999998776 5554 788999999972 22211111100 011 001355566655566666665
Q ss_pred CCcc
Q 025203 231 DQWS 234 (256)
Q Consensus 231 D~~s 234 (256)
+..+
T Consensus 69 ~~~~ 72 (95)
T PF02142_consen 69 YPFS 72 (95)
T ss_dssp -THH
T ss_pred CCCc
Confidence 5543
No 250
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=58.07 E-value=13 Score=29.30 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.2
Q ss_pred cEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCC
Q 025203 105 DAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 105 ~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~ 173 (256)
-.++|=+||+-+-.- .+.++-+.+++|...++++.+++.|+++++++-.-
T Consensus 36 V~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 36 VTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred eEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 467789999866532 12234456888999999999999999999998654
No 251
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=57.10 E-value=17 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
+.+++.++.++++|.+++.+|+.+...
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 678999999999999999999987643
No 252
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=57.05 E-value=21 Score=36.74 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=31.5
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGY 189 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~ 189 (256)
..-+|....++++|+++|++++++-+=.-......-+.+.+.|+
T Consensus 317 ~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 317 PDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 44567788999999999999998887433333334566666676
No 253
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=56.72 E-value=28 Score=29.24 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcccccCC-CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHH
Q 025203 81 DSQRAAEEVKLYLSGCCSLAG-DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEI 159 (256)
Q Consensus 81 d~~~~~~~a~~y~~~~~~~~~-~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L 159 (256)
+..++.++|+.+++.+ +..+ .+...+++|+...-..+ .+. ....+..|++++
T Consensus 65 ~~~~a~~eA~~f~~~~-~~~~l~~~~~~~lDvE~~~~~~---------------~~~-----------~~~~~~~f~~~v 117 (196)
T cd06415 65 SVSQAKYEADYFLNSA-QQAGLPKGSYLALDYEQGSGNS---------------KAA-----------NTSAILAFMDTI 117 (196)
T ss_pred CHHHHHHHHHHHHHHh-hhcCCCCCCEEEEEEecCCCCC---------------HHH-----------HHHHHHHHHHHH
Confidence 4467788888888766 3211 12245889999752111 111 114467899999
Q ss_pred HHcCCeEEEEeCCCc
Q 025203 160 KNRGVKIFLVSSRRE 174 (256)
Q Consensus 160 ~~~G~~i~ivTnR~~ 174 (256)
++.|++..|=|++.-
T Consensus 118 ~~~G~~~~iYt~~~~ 132 (196)
T cd06415 118 KDAGYKPMLYSYKPL 132 (196)
T ss_pred HHhCCCcEEEecHHH
Confidence 999999999999863
No 254
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=56.57 E-value=22 Score=29.73 Aligned_cols=70 Identities=13% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 025203 81 DSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIK 160 (256)
Q Consensus 81 d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~ 160 (256)
+...+.+||..+++.+ +..+ +...+++|++.+-..+. ..+.+ .....+.+|+++++
T Consensus 68 ~~~~a~~qA~~f~~~~-~~~~-~~~~~~lD~E~~~~~~~-----------~~~~~-----------~~~~~~~~f~~~v~ 123 (191)
T cd06414 68 TVAEAREEAEFVLRLI-KGYK-LSYPVYYDLEDETQLGA-----------GLSKD-----------QRTDIANAFCETIE 123 (191)
T ss_pred CHHHHHHHHHHHHHHh-hccC-CCCCeEEEeecCCCCCC-----------CCCHH-----------HHHHHHHHHHHHHH
Confidence 3456778899888876 4322 22246789987532210 01111 12355688999999
Q ss_pred HcCCeEEEEeCCCc
Q 025203 161 NRGVKIFLVSSRRE 174 (256)
Q Consensus 161 ~~G~~i~ivTnR~~ 174 (256)
+.|++++|=|++..
T Consensus 124 ~~G~~~~iY~~~~~ 137 (191)
T cd06414 124 AAGYYPGIYANLSW 137 (191)
T ss_pred HcCCCeEEEecHHH
Confidence 99999999999864
No 255
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=56.19 E-value=53 Score=24.26 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
+.+.+|+|+-++-.=. ...+....++++.++.+|.++.++--+++ ..+
T Consensus 40 ~~~~vvlDls~v~~iD---------------------------ssg~~~l~~~~~~~~~~g~~l~l~g~~~~-----v~~ 87 (109)
T cd07041 40 RARGVIIDLTGVPVID---------------------------SAVARHLLRLARALRLLGARTILTGIRPE-----VAQ 87 (109)
T ss_pred CCCEEEEECCCCchhc---------------------------HHHHHHHHHHHHHHHHcCCeEEEEeCCHH-----HHH
Confidence 4679999998753221 22335567788899999999988876653 467
Q ss_pred HHHhcCCCC
Q 025203 183 NLIHVGYHG 191 (256)
Q Consensus 183 ~L~~~G~~~ 191 (256)
.|+..|+..
T Consensus 88 ~l~~~gl~~ 96 (109)
T cd07041 88 TLVELGIDL 96 (109)
T ss_pred HHHHhCCCh
Confidence 888888864
No 256
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=55.86 E-value=30 Score=28.64 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc
Q 025203 83 QRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR 162 (256)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~ 162 (256)
..+.+||+.+++.+ +..+ +...+++|+.++--.+ .. .....+.+|+++++++
T Consensus 64 ~~a~~qA~~f~~~~-~~~~-~~~~~~lD~E~~~~~~---------------~~-----------~~~~~~~~f~~~v~~~ 115 (184)
T cd06525 64 SNPEEQAENFYNTI-KGKK-MDLKPALDVEVNFGLS---------------KD-----------ELNDYVLRFIEEFEKL 115 (184)
T ss_pred CCHHHHHHHHHHhc-cccC-CCCCeEEEEecCCCCC---------------HH-----------HHHHHHHHHHHHHHHH
Confidence 45678999999877 4322 2235789999863111 11 1125678999999998
Q ss_pred -CCeEEEEeCCCc
Q 025203 163 -GVKIFLVSSRRE 174 (256)
Q Consensus 163 -G~~i~ivTnR~~ 174 (256)
|+++.|=|+...
T Consensus 116 ~G~~~~iY~~~~~ 128 (184)
T cd06525 116 SGLKVGIYTYTSF 128 (184)
T ss_pred HCCCeEEEecHHH
Confidence 999999999864
No 257
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=55.70 E-value=21 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+.++.+.|.+.|++++ .|.. |.+.|++.|++
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~g-------Ta~~L~~~Gi~ 32 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGG-------TAKFLREAGLP 32 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccH-------HHHHHHHCCCc
Confidence 4577888999999985 6653 67888888886
No 258
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=55.21 E-value=50 Score=27.26 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 025203 81 DSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIK 160 (256)
Q Consensus 81 d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~ 160 (256)
....+.+||..+++.+ +. ++..+++|++++... .....+..|+++++
T Consensus 65 ~~~~a~~eA~~f~~~~-~~---~~~~~~lD~E~~~~~-----------------------------~~~~~~~~f~~~v~ 111 (177)
T cd06523 65 STADAKAEARDFYNRA-NK---KPTFYVLDVEVTSMS-----------------------------DMNAGVQAFISELR 111 (177)
T ss_pred CHHHHHHHHHHHHHHh-cC---CCceEEEeeccCCcc-----------------------------hHHHHHHHHHHHHH
Confidence 3556778899888766 33 445688999974321 11255788999999
Q ss_pred HcCC-eEEEEeCCC
Q 025203 161 NRGV-KIFLVSSRR 173 (256)
Q Consensus 161 ~~G~-~i~ivTnR~ 173 (256)
++|. +++|=|++.
T Consensus 112 ~~g~~~~~lYt~~~ 125 (177)
T cd06523 112 RLGAKKVGLYIGHH 125 (177)
T ss_pred HccCCcEEEEchHH
Confidence 9876 567777765
No 259
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.20 E-value=19 Score=27.46 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
--+.+.+.++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34788999999999999999999987654
No 260
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.91 E-value=17 Score=32.59 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSR 172 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR 172 (256)
..+|...+++++|+++|+++++...-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 35688899999999999999987753
No 261
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=54.39 E-value=4.5 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.4
Q ss_pred ecCccCccccchh
Q 025203 52 LNNIREFEVVPQE 64 (256)
Q Consensus 52 ~nn~~~~~~vP~~ 64 (256)
-||+.+++|+|+.
T Consensus 9 gnni~~fkt~p~s 21 (38)
T PF09198_consen 9 GNNIQNFKTTPSS 21 (38)
T ss_dssp SS--SSSSSHHHH
T ss_pred CCceeceeecCcc
Confidence 5899999999974
No 262
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.18 E-value=58 Score=29.18 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 130 ERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 130 ~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
.+|+..+.++.+.+.......|+.+++..|+++++++++.|..-. +.++..+++
T Consensus 121 ~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGig---diiEev~~q 174 (298)
T KOG3128|consen 121 GGFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIG---DIIEEVTRQ 174 (298)
T ss_pred CCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchH---HHHHHHHHH
Confidence 456667788888888888889999999999999999999998754 334555543
No 263
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=53.32 E-value=9.3 Score=32.16 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 213 QVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 213 ~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
.+++.++..|.. .+++|||+.+|+.........|.+.|.
T Consensus 153 ~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na 193 (225)
T TIGR01482 153 AVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANA 193 (225)
T ss_pred HHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCCh
Confidence 455555555654 489999999999887544456666554
No 264
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=52.22 E-value=24 Score=26.74 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
..+.+.++.++++|.+++.+|+.+...
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 677889999999999999999987643
No 265
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.06 E-value=44 Score=31.53 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcC-Ce-EEEEeCCCcccHHHHHHHHHhcCCC--CcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEE
Q 025203 152 TLNLFHEIKNRG-VK-IFLVSSRRESLRSYTVDNLIHVGYH--GWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWG 227 (256)
Q Consensus 152 ~~ell~~L~~~G-~~-i~ivTnR~~~~r~~T~~~L~~~G~~--~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~ 227 (256)
+.-+++++++.+ +. ++++||-... .+.....|..+++. .|+--++.+.....+.....-.++-+.+.+...+.++
T Consensus 19 mapli~~~~~~~~~~~~vi~TGQH~d-~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~Vl 97 (383)
T COG0381 19 MAPLVKALEKDPDFELIVIHTGQHRD-YEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVL 97 (383)
T ss_pred HhHHHHHHHhCCCCceEEEEeccccc-HHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 445678888886 54 4577886431 13455566666665 4443344332222211112223455566677889999
Q ss_pred EEcCCccccCCCC-------------CCCcEEEe
Q 025203 228 VVGDQWSSFEGLP-------------KPKRTFKL 248 (256)
Q Consensus 228 ~iGD~~sDl~ga~-------------~g~r~fkl 248 (256)
+-||+.+-+.|+- +|.|++-.
T Consensus 98 VhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~ 131 (383)
T COG0381 98 VHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDL 131 (383)
T ss_pred EeCCcchHHHHHHHHHHhCCceEEEecccccCCC
Confidence 9999999988652 67777643
No 266
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=51.68 E-value=11 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.4
Q ss_pred CcEEEEecCCCccCChHHHHH
Q 025203 104 KDAWIFDVDDTLLSTIPYFKK 124 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~ 124 (256)
.-.++++-|||.+++..||..
T Consensus 38 ~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CcEEEEecCCcEEccHHHHhc
Confidence 568999999999999998754
No 267
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=51.64 E-value=22 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
+.+.++++.++++|.+++.+|++...
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 67889999999999999999998764
No 268
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=50.85 E-value=47 Score=28.77 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=21.3
Q ss_pred CcEEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 223 YRIWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 223 ~~i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
.+.++.+||+.+|+.........|.+.|.
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 55699999999999876534466666554
No 269
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=50.53 E-value=12 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.0
Q ss_pred CCcEEEEecCCCccCChHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKK 124 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~ 124 (256)
+.-.++++-|||.+++..||..
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHhh
Confidence 3579999999999999998764
No 270
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.41 E-value=25 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
+.+.+.++.++++|.+++.+|+.+...
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 788999999999999999999987653
No 271
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=50.22 E-value=1.1e+02 Score=26.59 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHHHcCCe---EEEEeCCCc----ccHHHHHHHHHhcCCC-CcceEEEecCCCCCchhhhhhHHHHHH
Q 025203 146 APALEHTLNLFHEIKNRGVK---IFLVSSRRE----SLRSYTVDNLIHVGYH-GWASLELRGLEDEYKKVQQYKAQVRKR 217 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~---i~ivTnR~~----~~r~~T~~~L~~~G~~-~~~~lilr~~~~~~kp~~~~K~~~r~~ 217 (256)
-.-.|..+++++.+++.|-+ +.++|...- .+..+..+..++.|++ .|-|+++-+-+..+++...|-+.+...
T Consensus 10 ~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 10 FFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp GGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 33446667777777776533 446676542 2334455666677876 346777766666556666666666666
Q ss_pred HHhcCC-cEEEEEc
Q 025203 218 LVKEGY-RIWGVVG 230 (256)
Q Consensus 218 l~~~g~-~i~~~iG 230 (256)
+.+.|. +|.-.+|
T Consensus 90 l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 90 LAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHTCTEEEEEEE
T ss_pred HHhhCCceEEEEec
Confidence 666555 4444433
No 272
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=50.06 E-value=25 Score=32.03 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.2
Q ss_pred cCCcchHHHHHHHHHHHHcC-CeEEEEeCCCc
Q 025203 144 SKAPALEHTLNLFHEIKNRG-VKIFLVSSRRE 174 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G-~~i~ivTnR~~ 174 (256)
++...+|..-++++.+++.| +++|+|||..-
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 35678899999999999999 79999999864
No 273
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=49.98 E-value=43 Score=27.93 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-
Q 025203 84 RAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR- 162 (256)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~- 162 (256)
.+.+||..+++.+ +....+...+++|+++.-..+.+ ......+..|+++++++
T Consensus 69 ~a~~qA~~f~~~~-~~~~~~~~~~~lDvE~~~~~~~~-------------------------~~~~~~~~~f~~~v~~~~ 122 (194)
T cd06524 69 DPKQQADNFLNTV-KLLGPGDLPPVLDVEWDGRKSSA-------------------------KQIQEGVLEWLDAVEKAT 122 (194)
T ss_pred CHHHHHHHHHHHc-CCCCCCCCCeEEEEecCCCCCCH-------------------------HHHHHHHHHHHHHHHHHH
Confidence 4567888888766 43112223457999985332210 11236678899999875
Q ss_pred CCeEEEEeCCC
Q 025203 163 GVKIFLVSSRR 173 (256)
Q Consensus 163 G~~i~ivTnR~ 173 (256)
|.++.|=|++.
T Consensus 123 g~~~~iY~~~~ 133 (194)
T cd06524 123 GVKPIIYTNPS 133 (194)
T ss_pred CCCeEEEEcHH
Confidence 99999999875
No 274
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=49.83 E-value=65 Score=22.80 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
...--..++.+.++++|.++.++.-+++ ..+.|+..|+..
T Consensus 54 ~g~~~L~~l~~~~~~~g~~v~i~~~~~~-----~~~~l~~~gl~~ 93 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGRLVLVNVSPA-----VRRVLELTGLDR 93 (99)
T ss_pred hhHHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHhCcce
Confidence 3445567788899999998776665432 467777788764
No 275
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=49.67 E-value=1.1e+02 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+...++.+.|.+.|++++ .|.. |.+.|++.|++
T Consensus 13 ~~~~~~~~~l~~~G~~l~-aT~g-------T~~~l~~~gi~ 45 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV-ATEG-------TAKYLQEAGIP 45 (110)
T ss_pred hHHHHHHHHHHHCCCEEE-EchH-------HHHHHHHcCCe
Confidence 556777888888899885 4543 67778887875
No 276
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=49.51 E-value=71 Score=29.93 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=54.3
Q ss_pred CCeEEEEeCCCccc-----HHHHHHHHHhcCCC--CcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc---EEEEEcCC
Q 025203 163 GVKIFLVSSRRESL-----RSYTVDNLIHVGYH--GWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR---IWGVVGDQ 232 (256)
Q Consensus 163 G~~i~ivTnR~~~~-----r~~T~~~L~~~G~~--~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~---i~~~iGD~ 232 (256)
+-+++++|.+.-.. .+...+.|++.|+. .+...+.-.++...||.......+.+.+.+.|.+ .++.+|=.
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 46899999975432 24456677777843 1234444555566666433334556666677775 67777766
Q ss_pred c-cccCCC-----CCCCcEEEecC
Q 025203 233 W-SSFEGL-----PKPKRTFKLPN 250 (256)
Q Consensus 233 ~-sDl~ga-----~~g~r~fklPn 250 (256)
. .|+.+. ..|.+.+.+|-
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 4 677653 24778888884
No 277
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=49.27 E-value=43 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
..+|...+++++|+++|+++++...
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4568889999999999999998765
No 278
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=49.00 E-value=1.3e+02 Score=23.79 Aligned_cols=80 Identities=16% Similarity=0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEE
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESL---RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~ 228 (256)
..++++.+.+.+..++.+|...... ...+.+.|+..|.+. -.+++.+.......++ .+.++.+++.|++.+.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~~~~---~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGKHDF---EEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCccCh---HHHHHHHHHcCCCEEEC
Confidence 3556666777788888888755433 233556667777764 3555665432111111 33455667778766544
Q ss_pred EcCCccc
Q 025203 229 VGDQWSS 235 (256)
Q Consensus 229 iGD~~sD 235 (256)
-|..+.+
T Consensus 119 ~~~~~~~ 125 (137)
T PRK02261 119 PGTDPEE 125 (137)
T ss_pred cCCCHHH
Confidence 3444433
No 279
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.55 E-value=56 Score=29.45 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
.+|...+++++|+++|+++++...
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEC
Confidence 568899999999999999988655
No 280
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.36 E-value=26 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-+.+.++++.++++|.+++.+|+.+...
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 4788999999999999999999988654
No 281
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=48.34 E-value=12 Score=32.65 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=27.9
Q ss_pred CCchhhhhhHHHHHHHHhcCCcEEEEEcCCc-cccCCC-CCCCcEEEe
Q 025203 203 EYKKVQQYKAQVRKRLVKEGYRIWGVVGDQW-SSFEGL-PKPKRTFKL 248 (256)
Q Consensus 203 ~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~~-sDl~ga-~~g~r~fkl 248 (256)
-+||.+.|++...+.+- .....+++|||.. .|+.|+ ..|+|.+.+
T Consensus 179 vGKP~~~fFe~al~~~g-v~p~~aVMIGDD~~dDvgGAq~~GMrgilV 225 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALG-VDPEEAVMIGDDLNDDVGGAQACGMRGILV 225 (262)
T ss_pred ecCCCHHHHHHHHHhcC-CChHHheEEccccccchhhHhhhcceeEEe
Confidence 46777777754444331 2334589999998 456555 467776654
No 282
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=47.99 E-value=16 Score=26.48 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCCcEEEEecCCCccCChHHHHH
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKK 124 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~ 124 (256)
...-.++++-|||.+++..||..
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHhc
Confidence 45568999999999999999864
No 283
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=47.90 E-value=13 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 213 QVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 213 ~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
++...++..|.. .+++|||+.+|+.........|.+-|.
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na 201 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANA 201 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCc
Confidence 444555555653 599999999999886544455655553
No 284
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.42 E-value=28 Score=26.49 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~ 173 (256)
-+.+++.++.++++|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3788999999999999999999864
No 285
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.30 E-value=1.4e+02 Score=23.59 Aligned_cols=79 Identities=16% Similarity=0.007 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRE---SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
.++++.+++.+..++-+|+=.. .....+.+.|++.|+.. ..+++.+.-.-...+ .......|++.|++-+.--
T Consensus 40 e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d---~~~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQD---FEDVEKRFKEMGFDRVFAP 115 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhh---hHHHHHHHHHcCCCEEECc
Confidence 4566667777777777776332 22345667777777754 445555532111001 1223345666777666555
Q ss_pred cCCccc
Q 025203 230 GDQWSS 235 (256)
Q Consensus 230 GD~~sD 235 (256)
|+.+.+
T Consensus 116 gt~~~~ 121 (128)
T cd02072 116 GTPPEE 121 (128)
T ss_pred CCCHHH
Confidence 554443
No 286
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=47.20 E-value=14 Score=26.95 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.5
Q ss_pred CCcEEEEecCCCccCChHHHHHh
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKH 125 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~ 125 (256)
..-.++++-|||.+++..||...
T Consensus 38 ~~~~lvLeeDGT~Vd~EeyF~tL 60 (81)
T cd06537 38 GVLTLVLEEDGTAVDSEDFFELL 60 (81)
T ss_pred CceEEEEecCCCEEccHHHHhhC
Confidence 45799999999999999988653
No 287
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=47.03 E-value=40 Score=31.04 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc
Q 025203 83 QRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR 162 (256)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~ 162 (256)
.++.+.+..|-+.- =..+++++|+|=. + .++.-.+| ...+|...+++++|+++
T Consensus 24 ~ev~~v~~~~r~~~-----IP~D~i~lDidy~--~--------~~~~Ft~d------------~~~FPdp~~mv~~L~~~ 76 (332)
T cd06601 24 SDLEEVVEGYRDNN-----IPLDGLHVDVDFQ--D--------NYRTFTTN------------GGGFPNPKEMFDNLHNK 76 (332)
T ss_pred HHHHHHHHHHHHcC-----CCCceEEEcCchh--c--------CCCceeec------------CCCCCCHHHHHHHHHHC
Confidence 33455555554432 2357999999722 1 12222222 34568889999999999
Q ss_pred CCeEEEEeC
Q 025203 163 GVKIFLVSS 171 (256)
Q Consensus 163 G~~i~ivTn 171 (256)
|+++++...
T Consensus 77 G~klv~~i~ 85 (332)
T cd06601 77 GLKCSTNIT 85 (332)
T ss_pred CCeEEEEec
Confidence 999987654
No 288
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=46.65 E-value=14 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCcEEEEecCCCccCChHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKK 124 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~ 124 (256)
..-.++++-|||.+++..||..
T Consensus 41 ~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 41 APITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CceEEEEecCCcEEccHHHHhh
Confidence 4678999999999999998764
No 289
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=46.21 E-value=31 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
.+++.++.+.|.+.|++++ .|+. |.+.|+..|++
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~G-------TAk~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGG-------TAKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCe
Confidence 4788999999999999995 6655 78889999886
No 290
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=45.77 E-value=33 Score=31.21 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
.+|...++++.|+++|+++.+...
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEee
Confidence 468889999999999999987653
No 291
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=45.71 E-value=94 Score=29.75 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
--.|++.|+++|+.+-+.+-.++. -.|.+.|...|+++|+-+...+.-. +...........+.|-+|.+..
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k~~g-~~ls~~~ll~Fvd~GgNilv~~ 84 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVKEFG-GSLSPKTLLDFVDNGGNILVAG 84 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCcccccC-CCCCHHHHHHHHhCCCcEEEEe
Confidence 356889999999999999988743 3577789888999988775422100 0011222334445666665443
No 292
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=45.61 E-value=1.5e+02 Score=26.35 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHHHHHc-CCeEEEEeCCCcccHHHHHHHHHhc--CCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 156 FHEIKNR-GVKIFLVSSRRESLRSYTVDNLIHV--GYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 156 l~~L~~~-G~~i~ivTnR~~~~r~~T~~~L~~~--G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
|++...+ ++.+.++++......+...+..... .+..-+-++.+++... |.| +..|+.+.+.|. .++.|||.
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~--PGP---~~ARE~l~~~~i-P~IvI~D~ 96 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAA--PGP---KKAREILKAAGI-PCIVIGDA 96 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCC--CCc---hHHHHHHHhcCC-CEEEEcCC
Confidence 3444444 8999999887765544333322222 2221144555554322 222 456777777665 57789998
Q ss_pred cc
Q 025203 233 WS 234 (256)
Q Consensus 233 ~s 234 (256)
++
T Consensus 97 p~ 98 (277)
T PRK00994 97 PG 98 (277)
T ss_pred Cc
Confidence 75
No 293
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.53 E-value=37 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=23.4
Q ss_pred EEEEEcCCccccCCCCCCCcEEEecCCC
Q 025203 225 IWGVVGDQWSSFEGLPKPKRTFKLPNSM 252 (256)
Q Consensus 225 i~~~iGD~~sDl~ga~~g~r~fklPnp~ 252 (256)
.++.+||+++|+..-.+....+.+|+|.
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~~ 255 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSPI 255 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCCC
Confidence 6889999999998776677888888774
No 294
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=45.52 E-value=1.3e+02 Score=22.68 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
++..++.+.|.+.|++++ .|.. |.+.|++.|++. ..+....+. +.++ +..+...+++..++.++++
T Consensus 13 ~~~~~~a~~l~~~G~~i~-aT~g-------Ta~~L~~~gi~~--~~v~~~~~~-~~~~---~~~i~~~i~~~~idlVIn~ 78 (116)
T cd01423 13 PELLPTAQKLSKLGYKLY-ATEG-------TADFLLENGIPV--TPVAWPSEE-PQND---KPSLRELLAEGKIDLVINL 78 (116)
T ss_pred hhHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCCc--eEeeeccCC-CCCC---chhHHHHHHcCCceEEEEC
Confidence 677888999999999996 5654 788999999863 222211110 0000 1234555666667778886
Q ss_pred cCC
Q 025203 230 GDQ 232 (256)
Q Consensus 230 GD~ 232 (256)
-++
T Consensus 79 ~~~ 81 (116)
T cd01423 79 PSN 81 (116)
T ss_pred CCC
Confidence 443
No 295
>PRK10658 putative alpha-glucosidase; Provisional
Probab=45.44 E-value=40 Score=34.14 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGY 189 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~ 189 (256)
..+|...+++++|+++|+++++..+-.-......-+...+.|+
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 3467888999999999999998876432222223344455555
No 296
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=45.36 E-value=1.3e+02 Score=31.63 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=40.2
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
+-++...||+|.--... +.....|. ..--.||-+.+.+.+..+++.|++++.+|++...
T Consensus 560 ~~p~~~~f~~d~~n~p~---~nl~FlGl------------~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpi 618 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNFPT---DNLRFLGL------------ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPI 618 (1019)
T ss_pred cCCCceEeecCCCCCcc---hhccccch------------hhccCCCcccCchhhhhhhhhCceEEEEecCccc
Confidence 34678999998743332 22211121 1123677788888899999999999999998753
No 297
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=45.31 E-value=32 Score=29.68 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.4
Q ss_pred cEEEEecCCCccCCh
Q 025203 105 DAWIFDVDDTLLSTI 119 (256)
Q Consensus 105 ~avvfDiDgTlldn~ 119 (256)
++|+|||.||+.+-+
T Consensus 2 ~~~l~diegt~~~is 16 (220)
T TIGR01691 2 KNVLLDIEGTTGSIS 16 (220)
T ss_pred CEEEEecCCCcccHH
Confidence 689999999999865
No 298
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=45.30 E-value=16 Score=26.53 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.9
Q ss_pred CcEEEEecCCCccCChHHHHHh
Q 025203 104 KDAWIFDVDDTLLSTIPYFKKH 125 (256)
Q Consensus 104 ~~avvfDiDgTlldn~~~~~~~ 125 (256)
.-.++++-|||.+++..||...
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF~tL 60 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFFQAL 60 (79)
T ss_pred ccEEEEecCCcEEccHHHHhhC
Confidence 4789999999999999988653
No 299
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.44 E-value=33 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
--+.+++.++.++++|.+++.+|+.+...
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34899999999999999999999987543
No 300
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=44.32 E-value=88 Score=22.81 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
+++.+++|+.+.-.=. ...+.-..++.+.++++|..+.++.-+++ ..+
T Consensus 42 ~~~~vvidls~v~~iD---------------------------ssgl~~L~~~~~~~~~~~~~~~l~~~~~~-----~~~ 89 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMD---------------------------SSGLGVLLGRYKQVRRVGGQLVLVSVSPR-----VAR 89 (108)
T ss_pred CCCeEEEECCCCeEEc---------------------------cccHHHHHHHHHHHHhcCCEEEEEeCCHH-----HHH
Confidence 5678999998752221 22344556778888999998776665433 467
Q ss_pred HHHhcCCCCc
Q 025203 183 NLIHVGYHGW 192 (256)
Q Consensus 183 ~L~~~G~~~~ 192 (256)
.|+..|+...
T Consensus 90 ~l~~~~l~~~ 99 (108)
T TIGR00377 90 LLDITGLLRI 99 (108)
T ss_pred HHHHhChhhe
Confidence 7778888653
No 301
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=43.30 E-value=1.8e+02 Score=26.85 Aligned_cols=76 Identities=18% Similarity=0.074 Sum_probs=43.0
Q ss_pred HHHHHcC-CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-cc
Q 025203 157 HEIKNRG-VKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-WS 234 (256)
Q Consensus 157 ~~L~~~G-~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~s 234 (256)
+.+++.| -++++||++.....+...+.|++.|+.. .+..+ .... |....-.+..+.+++.+.+.++.||-. .-
T Consensus 16 ~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~---~~~~~-~~~~-p~~~~v~~~~~~~~~~~~D~IIavGGGs~~ 90 (367)
T cd08182 16 SLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLV---VVFDD-VQPN-PDLEDLAAGIRLLREFGPDAVLAVGGGSVL 90 (367)
T ss_pred HHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeE---EEEcC-cCCC-cCHHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 4455556 4799999987554455677788777541 12221 1111 222222334455566688888888874 35
Q ss_pred ccC
Q 025203 235 SFE 237 (256)
Q Consensus 235 Dl~ 237 (256)
|+.
T Consensus 91 D~a 93 (367)
T cd08182 91 DTA 93 (367)
T ss_pred HHH
Confidence 654
No 302
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=43.29 E-value=36 Score=27.33 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-+.+.+.++.++++|.+++.+|+.+...
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4788999999999999999999987654
No 303
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=50 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCC
Q 025203 153 LNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~ 173 (256)
...++-|.++|+.||.+|.-+
T Consensus 81 asV~~pLsd~gigIFavStyd 101 (128)
T COG3603 81 ASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred hhhhhhHhhCCccEEEEEecc
Confidence 345677999999999999644
No 304
>PRK13937 phosphoheptose isomerase; Provisional
Probab=42.63 E-value=36 Score=28.42 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
--+.+.+.++.++++|.+++.+|+.+...
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 34889999999999999999999987654
No 305
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=42.61 E-value=23 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.032 Sum_probs=26.2
Q ss_pred HHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEecCC
Q 025203 213 QVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLPNS 251 (256)
Q Consensus 213 ~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklPnp 251 (256)
.++..++..|. +.++++||+.+|+.........|.+.|.
T Consensus 163 al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na 203 (236)
T TIGR02471 163 ALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNH 203 (236)
T ss_pred HHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCC
Confidence 34444455564 3588999999999876544466666654
No 306
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=42.60 E-value=2.5e+02 Score=25.07 Aligned_cols=83 Identities=10% Similarity=-0.026 Sum_probs=48.7
Q ss_pred HHHHHHHHHH--cCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecC-CCCCchhhhhh-HHHHHHHHhcCCcEEE
Q 025203 152 TLNLFHEIKN--RGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGL-EDEYKKVQQYK-AQVRKRLVKEGYRIWG 227 (256)
Q Consensus 152 ~~ell~~L~~--~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K-~~~r~~l~~~g~~i~~ 227 (256)
++|.--+|++ .|.++..+|=-+....+ +.+..-.+|.+ +.++=.+ ...+ .++..- ..+...+++.|++ .+
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~-~lr~aLAmGaD---raili~d~~~~~-~d~~~ta~~Laa~~~~~~~~-LV 115 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEE-ALREALAMGAD---RAILITDRAFAG-ADPLATAKALAAAVKKIGPD-LV 115 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHH-HHHHHHhcCCC---eEEEEecccccC-ccHHHHHHHHHHHHHhcCCC-EE
Confidence 3444445666 68899999998775432 33334456765 3333332 2221 233222 3355566677777 56
Q ss_pred EEcCCccccCCCC
Q 025203 228 VVGDQWSSFEGLP 240 (256)
Q Consensus 228 ~iGD~~sDl~ga~ 240 (256)
..|+|-.|-.++.
T Consensus 116 l~G~qa~D~~t~q 128 (260)
T COG2086 116 LTGKQAIDGDTGQ 128 (260)
T ss_pred EEecccccCCccc
Confidence 7999999988775
No 307
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=42.60 E-value=1.1e+02 Score=27.75 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
--||+..+.+.|++.|.++.++|.+.. .+...+.++.++...
T Consensus 61 GP~GA~aLa~aL~~lG~~~~ivtd~~~--~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 61 GPPGAAALARALQALGKEVVIVTDERC--APVVKAAVRAAGLQG 102 (291)
T ss_pred ChHHHHHHHHHHHHcCCeEEEEECHHH--HHHHHHHHHHHhhCc
Confidence 349999999999999999999997653 334555556666643
No 308
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=42.56 E-value=27 Score=32.01 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL 184 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L 184 (256)
+....|...++++.++++|+.+++.||-.- ....+.|
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L 176 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL 176 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH
Confidence 344567899999999999999999999853 2344555
No 309
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=42.51 E-value=1.8e+02 Score=24.92 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=34.8
Q ss_pred HHHHHHHHHcC---CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 153 LNLFHEIKNRG---VKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 153 ~ell~~L~~~G---~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
..+++.+++.+ .-++++|||+... ..+..++.|++.+ ........ +...+-.++.+.+++.+.++++.+
T Consensus 14 ~al~~~~~~~~l~~~i~~visn~~~~~---~~~~A~~~gIp~~---~~~~~~~~--~~~~~~~~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 14 RAIHDACLDGRVNGDVVVVVTNKPGCG---GAEYARENGIPVL---VYPKTKGE--PDGLSPDELVDALRGAGVDFVLLA 85 (207)
T ss_pred HHHHHHHHcCCCCeEEEEEEEeCCCCh---HHHHHHHhCCCEE---EeccccCC--CcccchHHHHHHHHhcCCCEEEEe
Confidence 34555555543 4456788887543 3556667788731 11111100 111111344556666666666555
Q ss_pred c
Q 025203 230 G 230 (256)
Q Consensus 230 G 230 (256)
|
T Consensus 86 g 86 (207)
T PLN02331 86 G 86 (207)
T ss_pred C
Confidence 4
No 310
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=42.07 E-value=76 Score=26.48 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcccccCC-CCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHH
Q 025203 81 DSQRAAEEVKLYLSGCCSLAG-DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEI 159 (256)
Q Consensus 81 d~~~~~~~a~~y~~~~~~~~~-~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L 159 (256)
....+.+||..+++.+ +..+ .....+++|+.+.-.. ......+..|++++
T Consensus 68 ~~~~a~~eA~~f~~~~-~~~~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v 118 (192)
T cd06522 68 SAADAQAEARYFANTA-KSLGLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTM 118 (192)
T ss_pred ChHHHHHHHHHHHHHH-HHcCCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHH
Confidence 3456777888887765 3222 2233578999874220 11224567899999
Q ss_pred HHcCC-eEEEEeCCC
Q 025203 160 KNRGV-KIFLVSSRR 173 (256)
Q Consensus 160 ~~~G~-~i~ivTnR~ 173 (256)
+++|+ +..|=|++.
T Consensus 119 ~~~g~~~~~iY~~~~ 133 (192)
T cd06522 119 KAAGYKNTDVYTSAS 133 (192)
T ss_pred HHcCCCCcEEEccHH
Confidence 99998 777777764
No 311
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.81 E-value=38 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
--+.+.++++.++++|.+++.+|+.+...
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34788999999999999999999987654
No 312
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=41.24 E-value=1.4e+02 Score=27.72 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=41.5
Q ss_pred HHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-cccc
Q 025203 158 EIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-WSSF 236 (256)
Q Consensus 158 ~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~sDl 236 (256)
.+++.|-+++++|++.....+...+.|+..|+. +.. + ....+ |....-.+..+..++.+.+.++.||-. .-|.
T Consensus 17 ~l~~~~~r~livtd~~~~~~~~v~~~L~~~g~~-~~~-~-~~~~~---p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~ 90 (374)
T cd08183 17 LAAELGRRVLLVTGASSLRAAWLIEALRAAGIE-VTH-V-VVAGE---PSVELVDAAVAEARNAGCDVVIAIGGGSVIDA 90 (374)
T ss_pred HHHHcCCcEEEEECCchHHHHHHHHHHHHcCCe-EEE-e-cCCCC---cCHHHHHHHHHHHHhcCCCEEEEecCchHHHH
Confidence 344447899999997654455566778888875 221 1 11111 222111233444556678877777755 3455
Q ss_pred C
Q 025203 237 E 237 (256)
Q Consensus 237 ~ 237 (256)
.
T Consensus 91 a 91 (374)
T cd08183 91 G 91 (374)
T ss_pred H
Confidence 3
No 313
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.03 E-value=61 Score=29.57 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCC--eEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 150 EHTLNLFHEIKNRGV--KIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 150 pg~~ell~~L~~~G~--~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
..+++++...++.|. +|++.=+||..+-..+.+.|++.|++.
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 567889999998885 888899999988888999999999874
No 314
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=41.00 E-value=1e+02 Score=22.50 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
.+-...++.+.++++|.++.++.-++. ..+.|+..|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~~~~~-----v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTGISPA-----VRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCHH-----HHHHHHHhCchh
Confidence 345567888899999999998875543 567778888764
No 315
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=40.32 E-value=44 Score=30.64 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
..+|...++++.|+++|+++++...
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4568889999999999999987765
No 316
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=40.26 E-value=63 Score=26.45 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 025203 82 SQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKN 161 (256)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~ 161 (256)
...+.+||..+++.+ +.. .+...+++|+.+.-..+. .......+.++++.+++
T Consensus 63 ~~~a~~qa~~fi~~~-~~~-~~~~~~~lDvE~~~~~~~-------------------------~~~~~~~~~~f~~~~~~ 115 (186)
T cd00599 63 CANAEAQADNFVNTV-PRD-PGSLPLVLDVEDTGGGCS-------------------------AAALAAWLNAFLNEVEA 115 (186)
T ss_pred CCCHHHHHHHHHHHc-cCc-CCCCCeEEEEecCCCCCC-------------------------HHHHHHHHHHHHHHHHH
Confidence 455777888888777 432 355678889987543211 01233667899999999
Q ss_pred cC-CeEEEEeCCCc
Q 025203 162 RG-VKIFLVSSRRE 174 (256)
Q Consensus 162 ~G-~~i~ivTnR~~ 174 (256)
+| .++.+=|+...
T Consensus 116 ~gg~~~~iY~~~~~ 129 (186)
T cd00599 116 LTGKKPIIYTSPSF 129 (186)
T ss_pred HHCCceEEEEcHHH
Confidence 97 99999998763
No 317
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=40.09 E-value=1.9e+02 Score=26.74 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHcC-CeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc---EEEEEcC
Q 025203 158 EIKNRG-VKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR---IWGVVGD 231 (256)
Q Consensus 158 ~L~~~G-~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~---i~~~iGD 231 (256)
.+++.| -+++++|++.-. ..+...+.|+..|+. +...++. .....|+. ..-..+...+.+.|.+ .++.||.
T Consensus 17 ~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~-~~~~~~~-~~e~~k~~-~~v~~~~~~~~~~~~dr~~~IIAvGG 93 (355)
T cd08197 17 YLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAP-VELLSVP-SGEEHKTL-STLSDLVERALALGATRRSVIVALGG 93 (355)
T ss_pred HHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCc-eEEEEeC-CCCCCCCH-HHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 345555 578899987532 234456777888886 3333332 22222221 1223455566667776 7778887
Q ss_pred C-ccccCCCC-----CCCcEEEecC
Q 025203 232 Q-WSSFEGLP-----KPKRTFKLPN 250 (256)
Q Consensus 232 ~-~sDl~ga~-----~g~r~fklPn 250 (256)
. ..|+.+.- .|.+.+.+|-
T Consensus 94 Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 94 GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred cHHHHHHHHHHHHhccCCCEEEecC
Confidence 6 47887542 3677787775
No 318
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=39.98 E-value=1.7e+02 Score=27.60 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=51.8
Q ss_pred CCeEEEEeCCCccc-----HHHHHHHHHhcCCCC--cceEEEecCCCCCchhhhhhHHHHHHHHhcCCc---EEEEEcCC
Q 025203 163 GVKIFLVSSRRESL-----RSYTVDNLIHVGYHG--WASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR---IWGVVGDQ 232 (256)
Q Consensus 163 G~~i~ivTnR~~~~-----r~~T~~~L~~~G~~~--~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~---i~~~iGD~ 232 (256)
+-++++||++.-.. .+...+.|...|+.. +...+.-..+...||.+..-..+.+.+.+.+.+ .++.+|-.
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGG 121 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGG 121 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCc
Confidence 46899999875322 234556666677642 233444444555555533334555666666765 77788766
Q ss_pred c-cccCCC-----CCCCcEEEecC
Q 025203 233 W-SSFEGL-----PKPKRTFKLPN 250 (256)
Q Consensus 233 ~-sDl~ga-----~~g~r~fklPn 250 (256)
. .|+.+. ..|.+.+.+|-
T Consensus 122 sv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 122 AVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 4 677543 23667777774
No 319
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.95 E-value=41 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEe
Q 025203 150 EHTLNLFHEIKNRGVKIFLVS 170 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivT 170 (256)
+.+.++++.++++|.+++.+|
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 778999999999999999999
No 320
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=39.90 E-value=2.9e+02 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhcCCcchHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 132 LNASSWEAWMKESKAPALEHTLNLFHEIKNR-GVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 132 ~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~-G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
++++.|++++ .|..+++++.++++ |.++++-+-.... .....+...|+..
T Consensus 187 LSpe~f~efv-------~P~~krIi~~ik~~~g~piilH~cG~~~---~~l~~~~e~g~dv 237 (321)
T cd03309 187 ISPATFREFI-------LPRMQRIFDFLRSNTSALIVHHSCGAAA---SLVPSMAEMGVDS 237 (321)
T ss_pred cCHHHHHHHH-------HHHHHHHHHHHHhccCCceEEEeCCCcH---HHHHHHHHcCCCE
Confidence 3466787774 48889999999988 5545443333221 1355566666653
No 321
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=39.31 E-value=75 Score=29.38 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
.--..++++|+++|+.+.+.+ |.. ..|.+.|+..|++
T Consensus 14 hfFk~~I~eL~~~GheV~it~-R~~---~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITA-RDK---DETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEE-ecc---chHHHHHHHcCCC
Confidence 344677889999999988666 443 3478899999997
No 322
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=39.08 E-value=2.6e+02 Score=25.74 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=43.6
Q ss_pred HHHHHcCCeEEEEeCCCc-c---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 157 HEIKNRGVKIFLVSSRRE-S---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~-~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
+.+++.|-++++||++.. . ..+...+.|++.|+. + .+. +..... |....-.+..+.+++.+.+.++.||-.
T Consensus 19 ~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~-~--~~~-~~v~~~-p~~~~v~~~~~~~~~~~~D~IIavGGG 93 (357)
T cd08181 19 EELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIE-Y--EIF-DEVEEN-PSLETIMEAVEIAKKFNADFVIGIGGG 93 (357)
T ss_pred HHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCe-E--EEe-CCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 445667889999998753 2 235567778888875 2 122 111111 222222344455667788888888765
Q ss_pred c-cccC
Q 025203 233 W-SSFE 237 (256)
Q Consensus 233 ~-sDl~ 237 (256)
- -|..
T Consensus 94 SviD~a 99 (357)
T cd08181 94 SPLDAA 99 (357)
T ss_pred hHHHHH
Confidence 3 4554
No 323
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=38.58 E-value=52 Score=26.97 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHH-
Q 025203 82 SQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIK- 160 (256)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~- 160 (256)
...+.+||..|++.+ +....+.-.+++|+......+. +. ......+..|+++++
T Consensus 63 ~~~a~~qA~~f~~~~-~~~~~~~~~~~lD~E~~~~~~~-------------~~-----------~~~~~~~~~f~~~~~~ 117 (181)
T PF01183_consen 63 SSDAEAQADYFLNQV-KGGDPGDLPPALDVEDDKSNNP-------------SK-----------SDNTAWVKAFLDEVEK 117 (181)
T ss_dssp HCHHHHHHHHHHHCT-HTSSTSCS-EEEEE-S-GGCCS-------------SH-----------HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh-cccCCCcceEEEeccccccCCC-------------CH-----------HHHHHHHHHHHHHHHH
Confidence 466788999999877 5222233357999996511111 11 123356788999995
Q ss_pred HcCCeEEEEeCCCc
Q 025203 161 NRGVKIFLVSSRRE 174 (256)
Q Consensus 161 ~~G~~i~ivTnR~~ 174 (256)
..|+++.|=|++.-
T Consensus 118 ~~G~~~~iY~~~~~ 131 (181)
T PF01183_consen 118 AAGYKPGIYTSKSF 131 (181)
T ss_dssp HCTSEEEEEEEHHH
T ss_pred HhCCceeEeecHHH
Confidence 48999999888753
No 324
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=38.58 E-value=91 Score=29.03 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHHHHcC--CeEEEEeCCCcc
Q 025203 145 KAPALEHTLNLFHEIKNRG--VKIFLVSSRRES 175 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G--~~i~ivTnR~~~ 175 (256)
....+-++.+++++|+++| +.++++||.+..
T Consensus 46 D~N~if~avkiydeL~~~GedveVA~VsG~~~~ 78 (344)
T PF04123_consen 46 DVNAIFGAVKIYDELKAEGEDVEVAVVSGSPDV 78 (344)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEEECCCCC
Confidence 3567889999999999998 888999998763
No 325
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=38.55 E-value=21 Score=30.87 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.+++..++..|. +.+++|||+.+|+.........+.+.|
T Consensus 191 ~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~n 231 (256)
T TIGR00099 191 SALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGN 231 (256)
T ss_pred HHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecC
Confidence 345555555564 359999999999987643334444444
No 326
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.33 E-value=2e+02 Score=24.21 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHH
Q 025203 80 ADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEI 159 (256)
Q Consensus 80 ~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L 159 (256)
.++..+.+.|...++.. ..++.+.+.|+|=-+++--+ . ..+.+..+.|
T Consensus 85 ~~l~~AL~~A~~~L~~~-~~~~~~~rivi~v~S~~~~d-~------------------------------~~i~~~~~~l 132 (187)
T cd01452 85 ANFITGIQIAQLALKHR-QNKNQKQRIVAFVGSPIEED-E------------------------------KDLVKLAKRL 132 (187)
T ss_pred chHHHHHHHHHHHHhcC-CCcCCcceEEEEEecCCcCC-H------------------------------HHHHHHHHHH
Confidence 56778888999888776 44444557677655542222 0 2345788899
Q ss_pred HHcCCeEEEEeCCCc
Q 025203 160 KNRGVKIFLVSSRRE 174 (256)
Q Consensus 160 ~~~G~~i~ivTnR~~ 174 (256)
+++|+++.+++=...
T Consensus 133 kk~~I~v~vI~~G~~ 147 (187)
T cd01452 133 KKNNVSVDIINFGEI 147 (187)
T ss_pred HHcCCeEEEEEeCCC
Confidence 999999998886543
No 327
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=37.31 E-value=1.4e+02 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
..+.+.-++..|++.|-.+.+++.++-..++.+...|.+.|++.
T Consensus 57 l~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v 100 (425)
T PRK05476 57 MTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPV 100 (425)
T ss_pred ccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceE
Confidence 44778899999999999999999888888888999999999984
No 328
>PRK10976 putative hydrolase; Provisional
Probab=37.13 E-value=19 Score=31.34 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.++++.++..|.. .++.|||+.+|+..-......|.+.|
T Consensus 193 ~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~N 233 (266)
T PRK10976 193 HALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGN 233 (266)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecC
Confidence 4566666666764 49999999999986432223444444
No 329
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=36.90 E-value=77 Score=28.99 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
.|+..+++++++++|+.+.+.||..--. +.+.+.|...|+.
T Consensus 67 ~~~~~~ii~~~~~~g~~~~l~TNG~ll~-~e~~~~L~~~g~~ 107 (358)
T TIGR02109 67 RPDLVELVAHARRLGLYTNLITSGVGLT-EARLDALADAGLD 107 (358)
T ss_pred cccHHHHHHHHHHcCCeEEEEeCCccCC-HHHHHHHHhCCCC
Confidence 3667899999999999999999975322 3356777777775
No 330
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=36.79 E-value=2.3e+02 Score=23.05 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGY 189 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~ 189 (256)
|...++++++++.|+.+.+.||.... ...+.+...|+
T Consensus 77 ~~l~~li~~~~~~g~~v~i~TNg~~~---~~l~~l~~~g~ 113 (191)
T TIGR02495 77 AGLPDFLRKVRELGFEVKLDTNGSNP---RVLEELLEEGL 113 (191)
T ss_pred HhHHHHHHHHHHCCCeEEEEeCCCCH---HHHHHHHhcCC
Confidence 55788899999999999999998632 23444555664
No 331
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=36.75 E-value=1.8e+02 Score=24.02 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCC
Q 025203 153 LNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~ 173 (256)
.++.+.+++.|++|.+|.=..
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHHHHHHcCcEEEEEEech
Confidence 456778889999998887654
No 332
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=36.65 E-value=45 Score=29.07 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCC-HHHHHHHHHhcCCcchHHHHHHHHHHHH---------cCCeEEEE-eC
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLN-ASSWEAWMKESKAPALEHTLNLFHEIKN---------RGVKIFLV-SS 171 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~-~~~~~~wv~~~~~~~~pg~~ell~~L~~---------~G~~i~iv-Tn 171 (256)
.|+.+|-|+=++++... .+. ...|.+++...-.. ..+.+++..+.. .-+++.+. ..
T Consensus 60 ~Pd~~I~svGt~I~~~~-----------~~~~d~~w~~~i~~~w~~--~~v~~~l~~~~~l~~q~~~~q~~~k~sy~~~~ 126 (247)
T PF05116_consen 60 QPDYIITSVGTEIYYGE-----------NWQPDEEWQAHIDERWDR--ERVEEILAELPGLRPQPESEQRPFKISYYVDP 126 (247)
T ss_dssp E-SEEEETTTTEEEESS-----------TTEE-HHHHHHHHTT--H--HHHHHHHHCHCCEEEGGCCCGCCTCECEEEET
T ss_pred CCCEEEecCCeEEEEcC-----------CCcChHHHHHHHHhcCCh--HHHHHHHHHhhCcccCCccccCCeeEEEEEec
Confidence 36789988877766611 111 24577766653222 555555555521 23444433 32
Q ss_pred CCccc-HHHHHHHHHhcCCCCcceEEEecCC-CCCchhhhhhH-HHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEE
Q 025203 172 RRESL-RSYTVDNLIHVGYHGWASLELRGLE-DEYKKVQQYKA-QVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTF 246 (256)
Q Consensus 172 R~~~~-r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~-~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~f 246 (256)
..... .+...+.|+..|+.. +++.+... -.-.|....|. .++..++..|. +.++.+||+-+|+..-..+.+.+
T Consensus 127 ~~~~~~~~~i~~~l~~~~l~~--~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~v 204 (247)
T PF05116_consen 127 DDSADILEEIRARLRQRGLRV--NVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGV 204 (247)
T ss_dssp TSHCHHHHHHHHHHHCCTCEE--EEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEE
T ss_pred ccchhHHHHHHHHHHHcCCCe--eEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEE
Confidence 22222 344556666777752 22322211 01112223342 33444444454 34778999999997665567788
Q ss_pred EecCC
Q 025203 247 KLPNS 251 (256)
Q Consensus 247 klPnp 251 (256)
.+-|.
T Consensus 205 vV~Na 209 (247)
T PF05116_consen 205 VVGNA 209 (247)
T ss_dssp E-TTS
T ss_pred EEcCC
Confidence 77663
No 333
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=36.41 E-value=2.6e+02 Score=24.64 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
--.+.|-+.|+++|..+.|++.+.... ..+.+++.|++
T Consensus 18 ~Rcl~LA~~l~~~g~~v~f~~~~~~~~---~~~~i~~~g~~ 55 (279)
T TIGR03590 18 MRCLTLARALHAQGAEVAFACKPLPGD---LIDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHH---HHHHHHHcCCe
Confidence 445677777888888888888876543 24566777775
No 334
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.87 E-value=2.3e+02 Score=22.51 Aligned_cols=80 Identities=18% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEE
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESL---RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~ 228 (256)
..++++.+++.+..++-+|+..... ...+.+.|++.|+.. ..+++.+...-..++ ....+..+++.|++-+.-
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~d---~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQD---FPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChhh---hHHHHHHHHHcCCCEEEC
Confidence 3556667777777777777754322 334566677777753 234444431111011 122334566677665544
Q ss_pred EcCCccc
Q 025203 229 VGDQWSS 235 (256)
Q Consensus 229 iGD~~sD 235 (256)
=|+.+.+
T Consensus 117 pgt~~~~ 123 (134)
T TIGR01501 117 PGTPPEV 123 (134)
T ss_pred cCCCHHH
Confidence 4444443
No 335
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=34.56 E-value=3.2e+02 Score=25.29 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=42.2
Q ss_pred HHHHHHcCCeEEEEeCCCc----ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcC
Q 025203 156 FHEIKNRGVKIFLVSSRRE----SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGD 231 (256)
Q Consensus 156 l~~L~~~G~~i~ivTnR~~----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD 231 (256)
-+.+++.|-++++||++.. ...+...+.|++.|+.. .+..+-. ..|....-.+..+.+++.+.+.++.||-
T Consensus 18 ~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~---~~~~~v~--~~p~~~~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 18 GEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV---VVFDKVE--PNPTTTTVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred HHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE---EEeCCcc--CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445566789999998753 12345677888888752 1221111 1121211123344556667888887876
Q ss_pred C-ccccC
Q 025203 232 Q-WSSFE 237 (256)
Q Consensus 232 ~-~sDl~ 237 (256)
. .-|..
T Consensus 93 GS~iD~a 99 (380)
T cd08185 93 GSSMDTA 99 (380)
T ss_pred ccHHHHH
Confidence 3 34543
No 336
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.25 E-value=2.1e+02 Score=25.73 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCc--------ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHH
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRE--------SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLV 219 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~--------~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~ 219 (256)
+-..+.+++++.+++|+.|.+-.+... .+.+...+.+++.|+.+..--++..++ +....+...+.+..
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~---Q~~v~~y~~i~~~A- 146 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDD---QEMVNWYEDILEDA- 146 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTS---HHHHHHHHHHHHHH-
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCC---HHHHHHHHHHHHHH-
Confidence 346789999999999999999888655 334566777888899875444444432 12233333333333
Q ss_pred hcCCcEEEEEc
Q 025203 220 KEGYRIWGVVG 230 (256)
Q Consensus 220 ~~g~~i~~~iG 230 (256)
..|++.+++-
T Consensus 147 -A~~~LmvnfH 156 (273)
T PF10566_consen 147 -AEYKLMVNFH 156 (273)
T ss_dssp -HHTT-EEEET
T ss_pred -HHcCcEEEec
Confidence 2456655443
No 337
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=34.12 E-value=19 Score=30.11 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCC--cEEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGY--RIWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~--~i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.++++.++..|. +.++.|||+.+|+..-......|.+-|
T Consensus 189 ~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 189 SAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp HHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred HHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcC
Confidence 345555555565 568999999999976543345555544
No 338
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=33.96 E-value=2.1e+02 Score=21.72 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHc---CCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 150 EHTLNLFHEIKNR---GVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~---G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
|...+++..+.+. ++++.+.|+..... ....+.|.+.|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~-~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGTLLD-EELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEESTTHC-HHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHhhccccceeeeccccchh-HHHHHHHHhcCcc
Confidence 4445555556654 99999999987543 5578888888844
No 339
>PRK13938 phosphoheptose isomerase; Provisional
Probab=33.86 E-value=60 Score=27.51 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
--+.+++.++.++++|.+++.+|+.+...
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 34889999999999999999999987643
No 340
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=33.84 E-value=1.3e+02 Score=25.78 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
-++.++-++-+.+++.++.++++|=..+. -+.+.+.|.++|+.+
T Consensus 130 v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 130 VPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred eeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 56778888888899999999999987654 356888899999876
No 341
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.52 E-value=75 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeC
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
..+|...++++.|+++|+++.+...
T Consensus 61 ~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 61 ERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 3568889999999999999986543
No 342
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.28 E-value=2.7e+02 Score=22.74 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
-..=+.++++.+.++|.+|+++-++++.. +.+.++|++
T Consensus 31 g~dl~~~ll~~~~~~~~~v~llG~~~~~~-~~~~~~l~~ 68 (171)
T cd06533 31 GSDLMPALLELAAQKGLRVFLLGAKPEVL-EKAAERLRA 68 (171)
T ss_pred cHHHHHHHHHHHHHcCCeEEEECCCHHHH-HHHHHHHHH
Confidence 34456788999999999999997776643 445556665
No 343
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.15 E-value=53 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEeC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTn 171 (256)
|.+++.+++.+++|.+++-+||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 7889999999999999999986
No 344
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=32.98 E-value=1e+02 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
.|...+++++++++|+.+.+.||-.--. +...+.|...|+.
T Consensus 76 ~~~~~~il~~~~~~g~~~~i~TNG~ll~-~~~~~~L~~~g~~ 116 (378)
T PRK05301 76 RKDLEELVAHARELGLYTNLITSGVGLT-EARLAALKDAGLD 116 (378)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCccCC-HHHHHHHHHcCCC
Confidence 4667889999999999999999975322 2346677777775
No 345
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.77 E-value=3.6e+02 Score=24.90 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=42.0
Q ss_pred HHHHHHcC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcC
Q 025203 156 FHEIKNRG-VKIFLVSSRRES---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGD 231 (256)
Q Consensus 156 l~~L~~~G-~~i~ivTnR~~~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD 231 (256)
-+.+++.| -+++++|++.-. ..+...+.|+..|+. + .+. +..... |....-.+..+.+++.+.+.++.||-
T Consensus 18 ~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~-~--~~~-~~v~~~-p~~~~v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 18 PAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIE-Y--AVY-DGVPPD-PTIENVEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred HHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCe-E--EEe-CCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566667 589999987532 234466777777774 2 112 211111 21211133445555678888888876
Q ss_pred C-ccccC
Q 025203 232 Q-WSSFE 237 (256)
Q Consensus 232 ~-~sDl~ 237 (256)
. .-|..
T Consensus 93 GS~~D~a 99 (374)
T cd08189 93 GSVIDCA 99 (374)
T ss_pred ccHHHHH
Confidence 3 45554
No 346
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=32.40 E-value=1.1e+02 Score=31.01 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=73.7
Q ss_pred hhHHHHHhh-hchhhhHHHHHHHHHHHHHHHhccccc---CCCCCcEEEEecCCCccCChHH--HHH--hccCCCCCC--
Q 025203 64 ECIDHIKKY-MTSSQYKADSQRAAEEVKLYLSGCCSL---AGDGKDAWIFDVDDTLLSTIPY--FKK--HGFGGERLN-- 133 (256)
Q Consensus 64 ~c~~~v~~y-~~~~~Y~~d~~~~~~~a~~y~~~~~~~---~~~~~~avvfDiDgTlldn~~~--~~~--~~~g~~~~~-- 133 (256)
.|..-+... ..+..|.....++.+.+..+.+.+... ...++--.|.|+|-|++....- ..+ ..+..+.+.
T Consensus 102 ~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~ 181 (635)
T KOG0323|consen 102 SCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVE 181 (635)
T ss_pred HHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhccccccccc
Confidence 555555444 345577777788888888887765111 1233358899999999875411 000 001111110
Q ss_pred --H--HHHHHHHH--hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc-ceEEEecCCC
Q 025203 134 --A--SSWEAWMK--ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW-ASLELRGLED 202 (256)
Q Consensus 134 --~--~~~~~wv~--~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~-~~lilr~~~~ 202 (256)
. ..++-... .-..+.-|++.+||+++.+. +.+.+.|=.+..+.. .+..|..-+..-+ ++++-|.++.
T Consensus 182 sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~-~i~~liDP~~~lF~dRIisrde~~ 255 (635)
T KOG0323|consen 182 SNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYAL-EIAKLIDPEGKYFGDRIISRDESP 255 (635)
T ss_pred ccccceeecccCCCceEEEEeCccHHHHHHHHHhh-ceeEEEeccchHHHH-HHHHHhCCCCccccceEEEecCCC
Confidence 0 00110000 01246679999999999965 888888876544322 2223322233323 5677777643
No 347
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=32.32 E-value=2.4e+02 Score=25.85 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHHHHHHHH----HHcCCeEEEEeCCCcccH
Q 025203 150 EHTLNLFHEI----KNRGVKIFLVSSRRESLR 177 (256)
Q Consensus 150 pg~~ell~~L----~~~G~~i~ivTnR~~~~r 177 (256)
.++.+++..| ++++-.+.||.||.....
T Consensus 187 ~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil 218 (315)
T TIGR01370 187 AEMIAFVCEIAAYARAQNPQFVIIPQNGEELL 218 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEecCchhhh
Confidence 4455555555 999999999999987653
No 348
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.31 E-value=30 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.5
Q ss_pred CCcEEEEecCCCccCChHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKK 124 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~ 124 (256)
..-.++++=|||.+++..||..
T Consensus 39 ~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp STCEEEETTTTCBESSCHHHCC
T ss_pred cCcEEEEeCCCcEEccHHHHhh
Confidence 4567899999999999988753
No 349
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=32.26 E-value=1.6e+02 Score=24.80 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeC--CCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSS--RRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRI 225 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTn--R~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i 225 (256)
....+.++.++++|+. .+++| -.+.+|.-..+...++|+..+.-+..++. .++.+++.+.|++.
T Consensus 75 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~-----------~~ll~e~~~~g~~~ 140 (194)
T cd01994 75 EDLKELLRKLKEEGVD-AVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQ-----------EELLREMIEAGFKA 140 (194)
T ss_pred HHHHHHHHHHHHcCCC-EEEECccccHHHHHHHHHHHHHcCCEEEecccCCCH-----------HHHHHHHHHcCCeE
Confidence 3445566666766766 34555 44666777778888899876555553321 34556666778874
No 350
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=32.25 E-value=1.8e+02 Score=28.70 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=52.8
Q ss_pred HHHHHcCCeEEEEeCCCc-ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcC---CcEEEEEcCC
Q 025203 157 HEIKNRGVKIFLVSSRRE-SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEG---YRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g---~~i~~~iGD~ 232 (256)
+.+++.|.+++++|.... ...+...+.|+..|+.. ...++. +.+..|+.... ..+...+.+.+ .+.++.||-.
T Consensus 203 ~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~v-~~~v~p-~~E~~ksl~~v-~~~~~~l~~~~~~r~D~IIAIGGG 279 (542)
T PRK14021 203 QVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYEV-SDIVIP-DAEAGKTIEVA-NGIWQRLGNEGFTRSDAIVGLGGG 279 (542)
T ss_pred HHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCce-EEEEeC-CCcccCCHHHH-HHHHHHHHhcCCCCCcEEEEEcCh
Confidence 345566788888887543 22344567788888853 333333 33333332222 23334444444 5667788884
Q ss_pred -ccccCCCC-----CCCcEEEecC
Q 025203 233 -WSSFEGLP-----KPKRTFKLPN 250 (256)
Q Consensus 233 -~sDl~ga~-----~g~r~fklPn 250 (256)
..|+.+.- .|.+.+.+|-
T Consensus 280 sv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 280 AATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCC
Confidence 58887642 5888998886
No 351
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=32.13 E-value=2.1e+02 Score=23.93 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccccc-CCCC-CcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc
Q 025203 85 AAEEVKLYLSGCCSL-AGDG-KDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR 162 (256)
Q Consensus 85 ~~~~a~~y~~~~~~~-~~~~-~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~ 162 (256)
+.+||..|++.+ +. ..++ ...+++|++.+-..+.. ...+.+.. ..-+.+|+++++++
T Consensus 68 a~~qA~~fi~~~-~~~~~~~~~lp~~lD~E~~~~~~~~---------~~~~~~~~-----------~~~~~~f~~~v~~~ 126 (199)
T cd06412 68 GAAQADYFLDHG-GGWSPDGRTLPGVLDLEYNPYGATC---------YGLSPAQM-----------VSWIKDFSDTYKAR 126 (199)
T ss_pred HHHHHHHHHHHc-ccccCCCCCCCeEEEEecCCCCCcc---------CCCCHHHH-----------HHHHHHHHHHHHHH
Confidence 556898888876 32 2222 23467999984332110 00111112 23467889999886
Q ss_pred -CCeEEEEeCCCc
Q 025203 163 -GVKIFLVSSRRE 174 (256)
Q Consensus 163 -G~~i~ivTnR~~ 174 (256)
|++..|=|++.-
T Consensus 127 ~G~~~~iY~~~~~ 139 (199)
T cd06412 127 TGRDPVIYTTTSW 139 (199)
T ss_pred HCCCcEEEecHHH
Confidence 999999999863
No 352
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=32.10 E-value=4e+02 Score=24.72 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=43.2
Q ss_pred HHHHHHcC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcC
Q 025203 156 FHEIKNRG-VKIFLVSSRRES---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGD 231 (256)
Q Consensus 156 l~~L~~~G-~~i~ivTnR~~~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD 231 (256)
-+.+++.| -+++++|++.-. ..+...+.|++.|+. + . +. +.... -|....-.+..+.+++.+.+.++.||-
T Consensus 22 ~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~-~-~-~~-~~v~~-~p~~~~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 22 TDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLA-Y-E-IY-DGVKP-NPTIEVVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred HHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCe-E-E-Ee-CCCCC-CcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566667 588899987532 344567788888875 2 1 22 11111 122222233445556678888888876
Q ss_pred C-ccccC
Q 025203 232 Q-WSSFE 237 (256)
Q Consensus 232 ~-~sDl~ 237 (256)
. .-|+.
T Consensus 97 GS~iD~a 103 (382)
T PRK10624 97 GSPQDTC 103 (382)
T ss_pred hHHHHHH
Confidence 3 34544
No 353
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=31.99 E-value=96 Score=29.18 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcccHH---------------------HHHHHHHhcCCCCcceEEEecCCCCCchhhhhh
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESLRS---------------------YTVDNLIHVGYHGWASLELRGLEDEYKKVQQYK 211 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~r~---------------------~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K 211 (256)
--+-++++.+|..++++||-++.... ...+.++++|+. ++ .++|+.+... ...-
T Consensus 26 Dv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~-~D-~F~rTt~~~h---~~~v 100 (391)
T PF09334_consen 26 DVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNIS-YD-RFIRTTDDRH---KEFV 100 (391)
T ss_dssp HHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----S-EEEETTSHHH---HHHH
T ss_pred HHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-Cc-ceeCCCCHHH---HHHH
Confidence 33456788899999999999874321 122455666776 44 4666654322 2222
Q ss_pred HHHHHHHHhcCC
Q 025203 212 AQVRKRLVKEGY 223 (256)
Q Consensus 212 ~~~r~~l~~~g~ 223 (256)
..+.+.|.+.|+
T Consensus 101 ~~i~~~L~~~G~ 112 (391)
T PF09334_consen 101 QEIFKRLYDNGY 112 (391)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCc
Confidence 567777877775
No 354
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=31.97 E-value=4.1e+02 Score=25.81 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=51.1
Q ss_pred CCcchHHHHHHHHHHHHcCC-eEEEEeCCCcccH-HHHHHHHHhcCCCCcceEEEecCCCCCchhh----hhhHHHHHHH
Q 025203 145 KAPALEHTLNLFHEIKNRGV-KIFLVSSRRESLR-SYTVDNLIHVGYHGWASLELRGLEDEYKKVQ----QYKAQVRKRL 218 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~-~i~ivTnR~~~~r-~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~----~~K~~~r~~l 218 (256)
+...-....++++.+++.|+ .|-+.||+-.-.+ ....+.|+.+|. ..++++-++...++.. +.|. ..+..
T Consensus 120 EPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~---~tvYlsFDG~~e~~~~~~~~eIk~-alen~ 195 (475)
T COG1964 120 EPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGV---NTVYLSFDGVTPKTNWKNHWEIKQ-ALENC 195 (475)
T ss_pred CccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCC---cEEEEecCCCCCCchhhHhhhhHH-HHHHH
Confidence 34556778999999999999 7889999865332 446788888885 4677776664444433 2333 44445
Q ss_pred HhcCCc
Q 025203 219 VKEGYR 224 (256)
Q Consensus 219 ~~~g~~ 224 (256)
.+.|..
T Consensus 196 r~~g~~ 201 (475)
T COG1964 196 RKAGLP 201 (475)
T ss_pred HhcCCC
Confidence 566765
No 355
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=31.96 E-value=1.5e+02 Score=25.71 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 025203 81 DSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIK 160 (256)
Q Consensus 81 d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~ 160 (256)
+....+...+.++.+. |.++..+..++.++...+.. .+.+-.-.+.++.|+
T Consensus 22 ~~~~~~~~v~~~l~~a--------D~~~~NlE~~v~~~~~~~~~---------------------~~~f~~~~~~~~~L~ 72 (250)
T PF09587_consen 22 GFDYIFEDVKPLLQSA--------DLVVANLETPVTDSGQPASG---------------------YPHFNAPPEILDALK 72 (250)
T ss_pred ChHHHHHHHHHHHhhC--------CEEEEEeeecCcCCCCcCCC---------------------cceecCCHHHHHHHH
Confidence 5555566666666443 68889999888776432110 022222345567778
Q ss_pred HcCCeEEEEeCCCc-----ccHHHHHHHHHhcCCC
Q 025203 161 NRGVKIFLVSSRRE-----SLRSYTVDNLIHVGYH 190 (256)
Q Consensus 161 ~~G~~i~ivTnR~~-----~~r~~T~~~L~~~G~~ 190 (256)
..|+.++-+.|... .-...|.+.|++.|+.
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~ 107 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIP 107 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCc
Confidence 88888887776542 2245588888888876
No 356
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=31.94 E-value=33 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.+++..++..|.. .++.|||+.+|+..-......|.+-|
T Consensus 199 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 239 (270)
T PRK10513 199 TGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGN 239 (270)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecC
Confidence 4555555666654 48999999999987543334555544
No 357
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.82 E-value=98 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEE-eCCCcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLV-SSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~iv-TnR~~~~r~~T~~~L~~~G~~ 190 (256)
..|...++++.+++.|+++.+. ||...-......+.|..+|.+
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 4588899999999999999985 886533233467777777775
No 358
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.76 E-value=76 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
-..+.+-++|+++|+.|.++|...- .+.+...|++
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~~~------~~~v~~~Gl~ 47 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPPDF------RERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETGGG------HHHHHHTT-E
T ss_pred HHHHHHHHHHhccCCeEEEeecccc------eecccccCce
Confidence 3457888999999999999998652 4455778886
No 359
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.58 E-value=68 Score=26.97 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-+.++++++.++++|.+++.+|+.+...
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s~ 151 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGGK 151 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4778999999999999999999987543
No 360
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.57 E-value=67 Score=26.93 Aligned_cols=28 Identities=7% Similarity=0.283 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-+.+.+.++.++++|.+++.+|+.+...
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 4889999999999999999999986543
No 361
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.55 E-value=69 Score=27.15 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-+.+.+.++.++++|.+++.+|+.+...
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 4789999999999999999999987643
No 362
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=31.50 E-value=2.8e+02 Score=23.40 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcC--CeEE-EEeCCCcccHHHHHHHHHhcCCC
Q 025203 152 TLNLFHEIKNRG--VKIF-LVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 152 ~~ell~~L~~~G--~~i~-ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
...+++.+++.+ ..|. ++|++++.. ..+..++.|++
T Consensus 15 ~~~ll~~~~~~~~~~~I~~vvs~~~~~~---~~~~a~~~gIp 53 (200)
T PRK05647 15 LQAIIDACAAGQLPAEIVAVISDRPDAY---GLERAEAAGIP 53 (200)
T ss_pred HHHHHHHHHcCCCCcEEEEEEecCccch---HHHHHHHcCCC
Confidence 345666666654 4444 468887543 45666778888
No 363
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=31.47 E-value=37 Score=23.66 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=15.2
Q ss_pred CchhhHHHHHHHHHHHhhhcccccccchh
Q 025203 1 MARNSVLILAFTSLCIASALADWNILTQR 29 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (256)
|.+.+++.|+++ ..++++.+-|.|+++.
T Consensus 1 ms~~viIaL~~a-vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 1 MSRRVIIALVVA-VAAAAGAATWVIVQPR 28 (66)
T ss_pred CCcchhHHHHHH-HHhhhceeEEEEECCC
Confidence 455555555554 3444455568776654
No 364
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=31.41 E-value=2.3e+02 Score=25.83 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC---cEEEEEcCC-cccc
Q 025203 163 GVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY---RIWGVVGDQ-WSSF 236 (256)
Q Consensus 163 G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~---~i~~~iGD~-~sDl 236 (256)
+-+++++|+..-. ..+...+.|++.|+. +...++.+ ....++ ...-....+.+.+.+. +.++.||-. ..|+
T Consensus 20 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~-~~~~~~~~-~e~~~~-~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ 96 (344)
T TIGR01357 20 PSKLVIITDETVADLYADKLLEALQALGYN-VLKLTVPD-GEESKS-LETVQRLYDQLLEAGLDRSSTIIALGGGVVGDL 96 (344)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCc-eeEEEeCC-CCCCCC-HHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHH
Confidence 6789999986532 233455667777775 22223322 222211 1122334455555554 677778775 4677
Q ss_pred CCCC-----CCCcEEEecC
Q 025203 237 EGLP-----KPKRTFKLPN 250 (256)
Q Consensus 237 ~ga~-----~g~r~fklPn 250 (256)
.+.- .|.+.+.+|-
T Consensus 97 aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 97 AGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHccCCCEEEecC
Confidence 6542 3566777664
No 365
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.13 E-value=3.7e+02 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
..|...++++.++++|..+.++||-.--. .....+...|+.
T Consensus 85 L~pdl~eiv~~~~~~g~~v~l~TNG~ll~--~~~~~l~~~~~~ 125 (318)
T TIGR03470 85 LHPEIDEIVRGLVARKKFVYLCTNALLLE--KKLDKFEPSPYL 125 (318)
T ss_pred ccccHHHHHHHHHHcCCeEEEecCceehH--HHHHHHHhCCCc
Confidence 34677889999999999999999976422 234556666654
No 366
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=30.92 E-value=2.2e+02 Score=26.64 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc---EEEEEcCCc-ccc
Q 025203 163 GVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR---IWGVVGDQW-SSF 236 (256)
Q Consensus 163 G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~---i~~~iGD~~-sDl 236 (256)
|.+++++|+..-. ..+.....|.+.|+.. ..++ -+++++.|+- .....+...+.+.++. .++.+|-.. .|+
T Consensus 33 ~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v-~~~~-lp~GE~~Ksl-~~~~~i~~~ll~~~~~R~s~iialGGGvigDl 109 (360)
T COG0337 33 GRKVAIVTDETVAPLYLEKLLATLEAAGVEV-DSIV-LPDGEEYKSL-ETLEKIYDALLEAGLDRKSTLIALGGGVIGDL 109 (360)
T ss_pred CCeEEEEECchhHHHHHHHHHHHHHhcCCee-eEEE-eCCCcccccH-HHHHHHHHHHHHcCCCCCcEEEEECChHHHHH
Confidence 4499999998743 2455677788888863 3333 3455555543 3335566777776653 466676664 788
Q ss_pred CCC-----CCCCcEEEecC
Q 025203 237 EGL-----PKPKRTFKLPN 250 (256)
Q Consensus 237 ~ga-----~~g~r~fklPn 250 (256)
.|- ..|.+.+.+|-
T Consensus 110 aGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 110 AGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHcCCCeEeccc
Confidence 773 26888988884
No 367
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=30.81 E-value=1.6e+02 Score=24.91 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=49.0
Q ss_pred hchhhhHH-HHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHH
Q 025203 73 MTSSQYKA-DSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEH 151 (256)
Q Consensus 73 ~~~~~Y~~-d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg 151 (256)
++|..--+ |-+..-..++.|+.++ ...+..|..|+|=-||+.+.+. . ..
T Consensus 90 i~~~~~G~g~~~LG~~Lm~~f~~~L-~e~~~~p~~Ifl~n~gV~l~~~--------------------------~---~~ 139 (194)
T TIGR03527 90 ITSDKLGEGDEELGRILMKGFIYTL-SELDPLPKRILFVNGGVKLTTE--------------------------G---SE 139 (194)
T ss_pred EecCcCCCCcHHHHHHHHHHHHHHH-HhCCCCceEEEEEccceeeccC--------------------------C---ch
Confidence 44444444 4456667789999887 5555557899999999888752 0 35
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 025203 152 TLNLFHEIKNRGVKIFLV 169 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~iv 169 (256)
+.+.|+.|.++|++|..+
T Consensus 140 ~~e~Lk~L~~~Gv~I~~C 157 (194)
T TIGR03527 140 VLEDLKELEKKGVEILSC 157 (194)
T ss_pred HHHHHHHHHHCCCEEEEe
Confidence 688899999999988866
No 368
>smart00463 SMR Small MutS-related domain.
Probab=30.67 E-value=1.2e+02 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHcCC--eEEEEeCCCc
Q 025203 147 PALEHTLNLFHEIKNRGV--KIFLVSSRRE 174 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~--~i~ivTnR~~ 174 (256)
.++.-..++++.+.+.|. .+.++||+..
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 456777888999999997 7889999864
No 369
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=30.56 E-value=3.7e+02 Score=24.89 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHHHcC-CeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRG-VKIFLVSSRRE---SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G-~~i~ivTnR~~---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+-+.+++.| -+++++|++.- ...+...+.|+..|+. + .++.+-.. . |....-....+.+++.+.+.++.||
T Consensus 19 l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~-~--~~f~~v~~-~-p~~~~v~~~~~~~~~~~~D~IIavG 93 (377)
T cd08176 19 IGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGID-Y--VIYDGVKP-N-PTITNVKDGLAVFKKEGCDFIISIG 93 (377)
T ss_pred HHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCe-E--EEeCCCCC-C-CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 344566667 47888988753 2345677888888875 2 12222111 1 2121123344555667888888888
Q ss_pred CC-cccc
Q 025203 231 DQ-WSSF 236 (256)
Q Consensus 231 D~-~sDl 236 (256)
-. .-|.
T Consensus 94 GGS~iD~ 100 (377)
T cd08176 94 GGSPHDC 100 (377)
T ss_pred CcHHHHH
Confidence 74 3443
No 370
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.47 E-value=1.6e+02 Score=20.76 Aligned_cols=16 Identities=25% Similarity=0.032 Sum_probs=11.4
Q ss_pred HHhcCCcEEEEEcCCc
Q 025203 218 LVKEGYRIWGVVGDQW 233 (256)
Q Consensus 218 l~~~g~~i~~~iGD~~ 233 (256)
....|+..++.||++.
T Consensus 50 a~~~g~~~~iiiG~~e 65 (94)
T cd00861 50 ADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHhcCCCEEEEECCch
Confidence 3456888888888764
No 371
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=30.28 E-value=1.1e+02 Score=28.15 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=38.5
Q ss_pred HHHHHcCCeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 157 HEIKNRGVKIFLVSSRRES---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
+.+++.| ++++||++.-. ..+...+.|++.|+.. . +...-. ..|....-.+..+.+++.+.+.++.||-.
T Consensus 16 ~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~-~--~~~~~~--~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (366)
T PF00465_consen 16 EELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEV-Q--VFDGVG--PNPTLEDVDEAAEQARKFGADCIIAIGGG 88 (366)
T ss_dssp HHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEE-E--EEEEES--SS-BHHHHHHHHHHHHHTTSSEEEEEESH
T ss_pred HHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEE-E--EEecCC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3455558 99999998422 2344566677778762 1 111111 11112111344455667788888888764
No 372
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.25 E-value=96 Score=29.25 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccH---HHHHHHHHhcCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLR---SYTVDNLIHVGY 189 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r---~~T~~~L~~~G~ 189 (256)
...+|...++++.|+++|+++.+...-.-... ...-+.+...|+
T Consensus 79 ~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~ 125 (441)
T PF01055_consen 79 PERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGY 125 (441)
T ss_dssp TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-
T ss_pred cccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCc
Confidence 44678999999999999999886554321111 124555565666
No 373
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.24 E-value=91 Score=28.66 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=20.2
Q ss_pred chHHH--HHHHHHHHHcCCeEEEEeC
Q 025203 148 ALEHT--LNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 148 ~~pg~--~ell~~L~~~G~~i~ivTn 171 (256)
.+|.- .+++++|+++|+++.+...
T Consensus 62 ~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 62 RFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred cCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 45666 9999999999999997764
No 374
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=30.11 E-value=78 Score=28.38 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
+.+.-|+..|++.|-.|.+.++++-..++.+...|...|++.
T Consensus 54 ~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 54 AKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceE
Confidence 667889999999999999999999888888899999889874
No 375
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.37 E-value=4.4e+02 Score=24.41 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred HHHHHHcC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcC
Q 025203 156 FHEIKNRG-VKIFLVSSRRES---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGD 231 (256)
Q Consensus 156 l~~L~~~G-~~i~ivTnR~~~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD 231 (256)
-+.+++.| -+++++|++.-. ..+...+.|+..|+. + . ++ +..... |....-.+..+.+++.+.+.++.||-
T Consensus 21 ~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~-~-~-~~-~~v~~~-p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 21 VDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIA-Y-E-LF-DEVKPN-PTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred HHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCe-E-E-EE-CCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566667 588899987532 345567788888875 2 1 22 211111 21211123444555668888887877
Q ss_pred C-ccccC
Q 025203 232 Q-WSSFE 237 (256)
Q Consensus 232 ~-~sDl~ 237 (256)
. .-|..
T Consensus 96 GSviD~a 102 (379)
T TIGR02638 96 GSPIDTA 102 (379)
T ss_pred hHHHHHH
Confidence 3 45654
No 376
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.30 E-value=3.2e+02 Score=22.31 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhc
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHV 187 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~ 187 (256)
.+...=+.++++.+.++|.+++++-++++.. +...++|++.
T Consensus 31 v~g~dl~~~l~~~~~~~~~~ifllG~~~~~~-~~~~~~l~~~ 71 (172)
T PF03808_consen 31 VTGSDLFPDLLRRAEQRGKRIFLLGGSEEVL-EKAAANLRRR 71 (172)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHHHHHH
Confidence 3445667888999999999999999998653 4456666654
No 377
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=29.29 E-value=3.4e+02 Score=22.72 Aligned_cols=72 Identities=8% Similarity=0.168 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCC--eEE-EEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEE
Q 025203 152 TLNLFHEIKNRGV--KIF-LVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGV 228 (256)
Q Consensus 152 ~~ell~~L~~~G~--~i~-ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~ 228 (256)
...+++.+++.+. .|+ ++|+|++.. ..+..++.|++.. .+.......+ ..+-.++.+.+++.+.++++.
T Consensus 14 ~~~ll~~~~~~~l~~~I~~vi~~~~~~~---~~~~A~~~gip~~---~~~~~~~~~~--~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 14 LQAIIDACKEGKIPASVVLVISNKPDAY---GLERAAQAGIPTF---VLSLKDFPSR--EAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred HHHHHHHHHcCCCCceEEEEEECCccch---HHHHHHHcCCCEE---EECccccCch--hhhhHHHHHHHHhcCCCEEEE
Confidence 3456666666554 454 468886532 3555677788731 1221111100 112234455566666776666
Q ss_pred EcC
Q 025203 229 VGD 231 (256)
Q Consensus 229 iGD 231 (256)
+|=
T Consensus 86 ~~~ 88 (190)
T TIGR00639 86 AGF 88 (190)
T ss_pred eCc
Confidence 653
No 378
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=29.29 E-value=28 Score=30.42 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.++++.++..|.. .++.|||+.+|+..-......|.+-|
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 4566666666754 49999999999976432223444433
No 379
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=29.25 E-value=1.8e+02 Score=23.04 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=37.5
Q ss_pred HHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCe
Q 025203 86 AEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVK 165 (256)
Q Consensus 86 ~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~ 165 (256)
.+.+..|+--. -..|..|+||+.+|+-. ++.+. +....+++.-+.... .--....+.|....+.+.-
T Consensus 31 ~~a~~s~~~~~----~~~P~iV~FDmK~Tld~---F~~Q~--~~~~lte~q~e~lt~----rF~~aL~~~L~~yq~~H~~ 97 (128)
T PRK13717 31 LNAAVSYGIVR----LNAPVTAAFNMKQTVDA---FFDSA--SQKQLSEAQSKALSA----RFNTALEASLQAWQQKHHA 97 (128)
T ss_pred HHHHHHHHHhh----cCCCeEEEEehHHHHHH---HHHHH--hccCCCHHHHHHHHH----HHHHHHHHHHHHHHHhCCE
Confidence 34455555222 24578999999998755 22221 223344332222211 1112233456666767777
Q ss_pred EEEEeC
Q 025203 166 IFLVSS 171 (256)
Q Consensus 166 i~ivTn 171 (256)
|++++.
T Consensus 98 VILVsp 103 (128)
T PRK13717 98 VILVSP 103 (128)
T ss_pred EEEech
Confidence 777765
No 380
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.08 E-value=3e+02 Score=21.99 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHhc-CCC
Q 025203 150 EHTLNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLIHV-GYH 190 (256)
Q Consensus 150 pg~~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~~~-G~~ 190 (256)
+.++++.+.+++. |+++ +.|.. |.+.|++. |++
T Consensus 17 ~~l~~~a~~l~~ll~Gf~l-~AT~g-------Ta~~L~~~~Gi~ 52 (142)
T PRK05234 17 DDLVAWVKAHKDLLEQHEL-YATGT-------TGGLIQEATGLD 52 (142)
T ss_pred HHHHHHHHHHHHHhcCCEE-EEeCh-------HHHHHHhccCCe
Confidence 6678888888988 9986 47765 67788888 886
No 381
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=28.89 E-value=4.9e+02 Score=24.54 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHcC-CeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 157 HEIKNRG-VKIFLVSSRRESL---RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G-~~i~ivTnR~~~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
+.+++.| -+++++|++.-.. .+...+.|++.|+. + .++.+-. ..|....-....+.+++.+.+.++.||=.
T Consensus 16 ~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~-~--~~f~~v~--~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (414)
T cd08190 16 MDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGIN-F--EVYDDVR--VEPTDESFKDAIAFAKKGQFDAFVAVGGG 90 (414)
T ss_pred HHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCc-E--EEeCCCC--CCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4556666 5888999876322 34566778777775 2 1221111 11212111233445556678877777643
No 382
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=28.80 E-value=3.9e+02 Score=24.77 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcC-CeEEEEeCCCcc----cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEE
Q 025203 152 TLNLFHEIKNRG-VKIFLVSSRRES----LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIW 226 (256)
Q Consensus 152 ~~ell~~L~~~G-~~i~ivTnR~~~----~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~ 226 (256)
..+.++.+...| -+++++|++... ..+...+.|++.|+. + .++.+ .... |....-....+.+++.+.+.+
T Consensus 14 l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~-~--~~f~~-v~~~-p~~~~v~~~~~~~~~~~~D~I 88 (383)
T cd08186 14 IGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIE-Y--VLYNK-VTPN-PTVDQVDEAAKLGREFGAQAV 88 (383)
T ss_pred HHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCe-E--EEeCC-CCCC-CCHHHHHHHHHHHHHcCCCEE
Confidence 333444433336 479999987532 135567788888874 2 12221 1111 222222344555666778877
Q ss_pred EEEcC-CccccC
Q 025203 227 GVVGD-QWSSFE 237 (256)
Q Consensus 227 ~~iGD-~~sDl~ 237 (256)
+.||= +..|..
T Consensus 89 IaiGGGS~iD~a 100 (383)
T cd08186 89 IAIGGGSPIDSA 100 (383)
T ss_pred EEeCCccHHHHH
Confidence 77775 345554
No 383
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.67 E-value=1.4e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHHHcCC-eE-EEEeCC---CcccHHHHHHHHHhcCCCC
Q 025203 147 PALEHTLNLFHEIKNRGV-KI-FLVSSR---RESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~-~i-~ivTnR---~~~~r~~T~~~L~~~G~~~ 191 (256)
.-++.+.++++.|+++|. .+ +++-|. ++..++...+.|+++|+..
T Consensus 62 ~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 62 HGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 456778888888998886 44 455565 2333444678899999963
No 384
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=28.65 E-value=4.4e+02 Score=23.76 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhcCCcchHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 132 LNASSWEAWMKESKAPALEHTLNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 132 ~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
++++.|++|+ .|..+++++.+++. |+++..+.+... ...+.+...|..
T Consensus 204 lsp~~f~ef~-------~P~~k~i~~~i~~~~~~~~ilh~cg~~~----~~~~~~~~~~~~ 253 (335)
T cd00717 204 LSPEDFEEFV-------LPYLKRIIEEVKKRLPGVPVILFAKGAG----GLLEDLAQLGAD 253 (335)
T ss_pred CCHHHHHHHH-------HHHHHHHHHHHHHhCCCCCEEEEcCCCH----HHHHHHHhcCCC
Confidence 4577888885 38889999999998 677887777543 246666666654
No 385
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=28.41 E-value=2.8e+02 Score=26.22 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred CCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHH
Q 025203 103 GKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVD 182 (256)
Q Consensus 103 ~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~ 182 (256)
.+-.+|+|+-++|+-..--|. ++ | ....-||+.-|+.++. +-+.|++.|+.....-....+
T Consensus 188 p~yTLVleledvLVhpdws~~-tG----------w-------Rf~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d 248 (393)
T KOG2832|consen 188 PPYTLVLELEDVLVHPDWSYK-TG----------W-------RFKKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLD 248 (393)
T ss_pred CCceEEEEeeeeEeccchhhh-cC----------c-------eeccCchHHHHHHhhc-ccceEEEEecCCccchhhhHh
Confidence 456999999999998653332 11 2 2455699999999988 779999999987765333444
Q ss_pred HHHhcCCCC
Q 025203 183 NLIHVGYHG 191 (256)
Q Consensus 183 ~L~~~G~~~ 191 (256)
.|.-.|+-.
T Consensus 249 ~lDP~g~Is 257 (393)
T KOG2832|consen 249 ALDPKGYIS 257 (393)
T ss_pred hcCCcceEE
Confidence 444445543
No 386
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=28.14 E-value=1.7e+02 Score=27.51 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
.+..+.+++.|.+-+++|.+.. -||.-|+.-+-.-......|....-.++.+++++.|.+.-+|..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHH------------DGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S 149 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHH------------DGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHS 149 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeec------------CCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcC
Confidence 3445678999999999999854 36765643211000001111112224566777788988877655
No 387
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=28.10 E-value=2e+02 Score=25.97 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHc-CCe-EEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEecCCCC-CchhhhhhHHHHHHHHhcCCcE
Q 025203 150 EHTLNLFHEIKNR-GVK-IFLVSSRRESLRSYTVDNLIHVGYHGWA-SLELRGLEDE-YKKVQQYKAQVRKRLVKEGYRI 225 (256)
Q Consensus 150 pg~~ell~~L~~~-G~~-i~ivTnR~~~~r~~T~~~L~~~G~~~~~-~lilr~~~~~-~kp~~~~K~~~r~~l~~~g~~i 225 (256)
--+..+++.|++. ++. .+++||+.. ......++.+|++ .+ .+.+.+.+.. .+.....-..+.+.+++..+++
T Consensus 14 ~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDi 89 (365)
T TIGR00236 14 IKMAPLIRALKKYPEIDSYVIVTAQHR---EMLDQVLDLFHLP-PDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDI 89 (365)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeCCCH---HHHHHHHHhcCCC-CCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCE
Confidence 3455677788875 443 578999874 3344444556775 32 2233321111 1111111234556677778999
Q ss_pred EEEEcCCccccCC
Q 025203 226 WGVVGDQWSSFEG 238 (256)
Q Consensus 226 ~~~iGD~~sDl~g 238 (256)
+...||...-+.+
T Consensus 90 v~~~gd~~~~la~ 102 (365)
T TIGR00236 90 VLVQGDTTTTLAG 102 (365)
T ss_pred EEEeCCchHHHHH
Confidence 9999998765544
No 388
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.97 E-value=3.6e+02 Score=22.58 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCccCChHHHHHhccCCCCCC-HHHHHHHHHh-----------cCCcchHHHHHHHHHHHHcCCeEEEE
Q 025203 102 DGKDAWIFDVDDTLLSTIPYFKKHGFGGERLN-ASSWEAWMKE-----------SKAPALEHTLNLFHEIKNRGVKIFLV 169 (256)
Q Consensus 102 ~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~-~~~~~~wv~~-----------~~~~~~pg~~ell~~L~~~G~~i~iv 169 (256)
.+.++|.+-.|-..+.... ..|. .+-|..-++. ....--+.+++.++..+++|.+++-+
T Consensus 72 ~~lpaIaLt~dsS~lTai~---------NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~l 142 (176)
T COG0279 72 PSLPAIALSTDSSVLTAIA---------NDYGYDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIAL 142 (176)
T ss_pred CCCCeeEeecccHHHhhhh---------ccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEE
Confidence 3456777777765555331 1122 1234444543 11223478999999999999999999
Q ss_pred eCCCccc
Q 025203 170 SSRRESL 176 (256)
Q Consensus 170 TnR~~~~ 176 (256)
|||+...
T Consensus 143 tG~~GG~ 149 (176)
T COG0279 143 TGKDGGK 149 (176)
T ss_pred ecCCCcc
Confidence 9998754
No 389
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=27.85 E-value=1.7e+02 Score=24.38 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHH-c
Q 025203 84 RAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKN-R 162 (256)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~-~ 162 (256)
.+.+||..+++.+ +.. .+...+++|+++.-.+. ......+.+|++++++ .
T Consensus 62 ~a~~qA~~f~~~~-~~~-~~~~~~~lD~E~~~~~~---------------------------~~~~~~~~~f~~~v~~~~ 112 (195)
T cd06417 62 NAIAEADYFLNNI-KGY-VGKAVLVLDWESYQNSA---------------------------WGNSAWARQWVNRVHELT 112 (195)
T ss_pred CHHHHHHHHHHHh-ccc-cCCCcEEEEeeCCCCCc---------------------------hHHHHHHHHHHHHHHHHH
Confidence 4778899888776 332 12346789999753210 0112456889999986 6
Q ss_pred CCeEEEEeCCC
Q 025203 163 GVKIFLVSSRR 173 (256)
Q Consensus 163 G~~i~ivTnR~ 173 (256)
|++++|=|++.
T Consensus 113 G~~~~iY~~~~ 123 (195)
T cd06417 113 GVWPMVYVSKS 123 (195)
T ss_pred CCCcEEEecHH
Confidence 99999999875
No 390
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=27.83 E-value=3e+02 Score=25.46 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=50.0
Q ss_pred cCCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC----cEEEEEcCC-cc
Q 025203 162 RGVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY----RIWGVVGDQ-WS 234 (256)
Q Consensus 162 ~G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~----~i~~~iGD~-~s 234 (256)
.+-+++++|++.-. ..+...+.|+..|+. +..+++.+ .+..|+.. .-..+...+.+.+. +.++.||.. ..
T Consensus 25 ~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~-~~~~v~~~-~e~~~s~~-~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~ 101 (354)
T cd08199 25 GSGRRFVVVDQNVDKLYGKKLREYFAHHNIP-LTILVLRA-GEAAKTMD-TVLKIVDALDAFGISRRREPVLAIGGGVLT 101 (354)
T ss_pred CCCeEEEEECccHHHHHHHHHHHHHHhcCCc-eEEEEeCC-CCCCCCHH-HHHHHHHHHHHcCCCCCCCEEEEECCcHHH
Confidence 34688999987532 234456777777885 33333332 22222222 22334445555565 778888884 57
Q ss_pred ccCCC-----CCCCcEEEecC
Q 025203 235 SFEGL-----PKPKRTFKLPN 250 (256)
Q Consensus 235 Dl~ga-----~~g~r~fklPn 250 (256)
|+.+. ..|.+.+.+|-
T Consensus 102 D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 102 DVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHhcCCCCEEEEcC
Confidence 88664 34777787775
No 391
>PRK15029 arginine decarboxylase; Provisional
Probab=27.80 E-value=53 Score=33.85 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=23.0
Q ss_pred HHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHH
Q 025203 153 LNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 153 ~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.++++++++. .++|+++|+|.....+....-|+
T Consensus 73 ~ell~~IR~~~~~iPIIlLTar~~~~~~~~~~~~~ 107 (755)
T PRK15029 73 RQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLE 107 (755)
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcccccCCHHHHH
Confidence 6788888875 59999999998643333444444
No 392
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.65 E-value=3e+02 Score=21.58 Aligned_cols=74 Identities=15% Similarity=0.001 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESL---RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
.++++.+++.+..++.+|+-...+ -..+.+.|++.|.+. -.++..+... +..+..+++.|.+-++..
T Consensus 43 e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~-i~vivGG~~~---------~~~~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD-ILVVVGGVIP---------PQDFDELKEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC-CEEEEeCCCC---------hHhHHHHHHCCCCEEECC
Confidence 355666666677777777655432 233445555556532 2344433211 112334556666665555
Q ss_pred cCCcccc
Q 025203 230 GDQWSSF 236 (256)
Q Consensus 230 GD~~sDl 236 (256)
|.+..++
T Consensus 113 gt~~~~i 119 (132)
T TIGR00640 113 GTPIPES 119 (132)
T ss_pred CCCHHHH
Confidence 5555443
No 393
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=27.62 E-value=1e+02 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
-++...+++++++++|+.++.||..+.. ...+.++..+++
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~~~~~~~~ 83 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDDPE---EIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHHHHHHTCS
T ss_pred chhHHHHHhhhhccceEEeeeccccccc---chhhhhhhhccc
Confidence 3477888999999999999999996644 356677766754
No 394
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.25 E-value=39 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCc--EEEEEcCCccccCCCCCCCcEEEecC
Q 025203 212 AQVRKRLVKEGYR--IWGVVGDQWSSFEGLPKPKRTFKLPN 250 (256)
Q Consensus 212 ~~~r~~l~~~g~~--i~~~iGD~~sDl~ga~~g~r~fklPn 250 (256)
.+++..++..|.. .++.+||+.+|+..-......+..-|
T Consensus 192 ~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~N 232 (264)
T COG0561 192 YALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGN 232 (264)
T ss_pred HHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccC
Confidence 3455555556765 59999999999976433334444444
No 395
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.20 E-value=3.6e+02 Score=22.34 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=30.9
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
.+-..=+.++++.+.++|.+++++-++++. .+.+.++|++. ||+
T Consensus 31 v~G~dl~~~l~~~~~~~~~~vfllG~~~~v-~~~~~~~l~~~-yP~ 74 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEKLPIFLYGGKPDV-LQQLKVKLIKE-YPK 74 (177)
T ss_pred cChHHHHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH-CCC
Confidence 334455678888888999999999888764 34566777653 443
No 396
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=27.13 E-value=2.7e+02 Score=20.87 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWA 193 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~ 193 (256)
--...+++.++..|.+++++.-+++ ..+.+...|+...+
T Consensus 63 ~~L~~~~~~~~~~g~~~~l~~i~p~-----v~~~~~~~gl~~~~ 101 (117)
T COG1366 63 GVLVALLKSARLRGVELVLVGIQPE-----VARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHhCchhhc
Confidence 3446677889999998888887764 46677788887543
No 397
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.08 E-value=2e+02 Score=19.21 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCc
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
..++++.++++|++.+.+|....
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~ 39 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGN 39 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCc
Confidence 46889999999999999999863
No 398
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.06 E-value=52 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHHHHhhhccccc
Q 025203 1 MARNSVLILAFTSLCIASALADWN 24 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (256)
||+-.+|+|.|++.++-+.|++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 776666666666666667777654
No 399
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=27.05 E-value=3.4e+02 Score=24.79 Aligned_cols=87 Identities=11% Similarity=-0.034 Sum_probs=46.6
Q ss_pred HHHHHcCCeEEEEeCCCc--ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-c
Q 025203 157 HEIKNRGVKIFLVSSRRE--SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-W 233 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~--~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~ 233 (256)
+.+++.|-+++++|++.. ...+...+.|++.|+.. ...++.++ |....-....+.+++.+.+.++.||-. .
T Consensus 16 ~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~~-~~~~~~~~-----p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 89 (349)
T cd08550 16 AILSTFGSKVAVVGGKTVLKKSRPRFEAALAKSIIVV-DVIVFGGE-----CSTEEVVKALCGAEEQEADVIIGVGGGKT 89 (349)
T ss_pred HHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhcCCee-EEEEcCCC-----CCHHHHHHHHHHHHhcCCCEEEEecCcHH
Confidence 455666788999998653 22344566677777641 22222221 111111234445556678888888864 4
Q ss_pred cccCCC---CCCCcEEEec
Q 025203 234 SSFEGL---PKPKRTFKLP 249 (256)
Q Consensus 234 sDl~ga---~~g~r~fklP 249 (256)
.|...+ ..+.+.+.+|
T Consensus 90 ~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 90 LDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHcCCCEEEeC
Confidence 566443 1345555555
No 400
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=27.02 E-value=3.9e+02 Score=23.81 Aligned_cols=100 Identities=14% Similarity=0.249 Sum_probs=58.8
Q ss_pred hhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHHHHHHHHHh
Q 025203 64 ECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNASSWEAWMKE 143 (256)
Q Consensus 64 ~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~~~~~wv~~ 143 (256)
.|+-.++||.+.++|.+-+++...++.+=+ .|+.||..----+|+..|. |.-..++
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~ef---------~Pd~VvYNAGTDiLeGDpL------G~L~ISp--------- 273 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLAEF---------RPDMVVYNAGTDILEGDPL------GNLAISP--------- 273 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHHhh---------CCcEEEEeCCCccccCCCC------CCeeecc---------
Confidence 466678899999999999998877665432 2345554432224443321 2111111
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcc-----cHHHHHHHHHhcCC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRES-----LRSYTVDNLIHVGY 189 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~-----~r~~T~~~L~~~G~ 189 (256)
.-.+.--.-+++..+.+|++++.+|+.... -....+.||..+|+
T Consensus 274 --~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 274 --EGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred --cccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 112222344577889999999999886431 22335567776665
No 401
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=27.01 E-value=3e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=23.5
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~ 173 (256)
...++.+.++++..+++|++|++++..+
T Consensus 19 ~~~~~~i~~l~~~ar~~g~pVi~~~~~~ 46 (157)
T cd01012 19 DELINNTVKLAKAAKLLDVPVILTEQYP 46 (157)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 3567889999999999999999987543
No 402
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=26.90 E-value=1.2e+02 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCC---CcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSR---RESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR---~~~~r~~T~~~L~~~G~~ 190 (256)
.+|...++.++++++|+.++.++.. .+...+...+.+++.|++
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 4688889999999899999988752 123345567778888886
No 403
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=26.60 E-value=2.7e+02 Score=24.80 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCc----------------c----cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhH
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRE----------------S----LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKA 212 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~----------------~----~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~ 212 (256)
.++++.++++|+++.+.=+... . ..+...+.|++.||++.+--+-.........-..+-.
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~ 127 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLR 127 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHH
Confidence 3677778888999885533211 1 1233445566788877421110111111111123335
Q ss_pred HHHHHHHhcCCcEEEE
Q 025203 213 QVRKRLVKEGYRIWGV 228 (256)
Q Consensus 213 ~~r~~l~~~g~~i~~~ 228 (256)
++|..+.+.|+.+++.
T Consensus 128 ~lr~~l~~~~~~lsv~ 143 (313)
T cd02874 128 ELSDRLHPAGYTLSTA 143 (313)
T ss_pred HHHHHhhhcCcEEEEE
Confidence 6777777677765443
No 404
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=26.60 E-value=60 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.2
Q ss_pred CCcEEEEecCCCccC
Q 025203 103 GKDAWIFDVDDTLLS 117 (256)
Q Consensus 103 ~~~avvfDiDgTlld 117 (256)
..+++|-|-||+.-.
T Consensus 68 dYDVLItd~dG~~hq 82 (100)
T PF05984_consen 68 DYDVLITDGDGSEHQ 82 (100)
T ss_pred cccEEEecCCCCcCC
Confidence 467888899987544
No 405
>PRK02947 hypothetical protein; Provisional
Probab=26.57 E-value=83 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+.+.++++.++++|.+++.+|+...
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 7789999999999999999999864
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.51 E-value=2.1e+02 Score=19.67 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
-..++-..|++.|.++.++..++.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 346777778888888888888765
No 407
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.37 E-value=87 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 34789999999999999999999987653
No 408
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.36 E-value=2.8e+02 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
+-++-++|+++|.++.+|+.-. +|.+..+.|+.
T Consensus 117 ~~KLA~~lkk~~~kvllVaaD~--~RpAA~eQL~~ 149 (451)
T COG0541 117 AGKLAKYLKKKGKKVLLVAADT--YRPAAIEQLKQ 149 (451)
T ss_pred HHHHHHHHHHcCCceEEEeccc--CChHHHHHHHH
Confidence 3445555666666666665432 34455555543
No 409
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=26.34 E-value=41 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=19.2
Q ss_pred HHHHHHHhcCC--cEEEEEcCCccccCCCC
Q 025203 213 QVRKRLVKEGY--RIWGVVGDQWSSFEGLP 240 (256)
Q Consensus 213 ~~r~~l~~~g~--~i~~~iGD~~sDl~ga~ 240 (256)
.+++.++..+. +.+++|||+.+|+.+..
T Consensus 171 a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~ 200 (244)
T TIGR00685 171 IVKRLLWHQPGSGISPVYLGDDITDEDAFR 200 (244)
T ss_pred HHHHHHHhcccCCCceEEEcCCCcHHHHHH
Confidence 34444555553 36899999999998753
No 410
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=26.32 E-value=5.3e+02 Score=23.89 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHcCCeEEEEeCCCc----ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 157 HEIKNRGVKIFLVSSRRE----SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
+.+++.|-++++||++.. ...+...+.|+..|+. + .++.+ .... |....-....+.+++.+.+.++.||=.
T Consensus 22 ~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~-~--~~~~~-v~~~-p~~~~v~~~~~~~~~~~~D~IIaiGGG 96 (382)
T cd08187 22 KELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIE-V--VELGG-VEPN-PRLETVREGIELCKEEKVDFILAVGGG 96 (382)
T ss_pred HHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCe-E--EEECC-ccCC-CCHHHHHHHHHHHHHcCCCEEEEeCCh
Confidence 344555789999998642 2245577788888874 1 12211 1111 111111223344556678877777753
Q ss_pred -cccc
Q 025203 233 -WSSF 236 (256)
Q Consensus 233 -~sDl 236 (256)
..|.
T Consensus 97 S~iD~ 101 (382)
T cd08187 97 SVIDS 101 (382)
T ss_pred HHHHH
Confidence 3444
No 411
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=26.28 E-value=1.9e+02 Score=25.96 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=58.5
Q ss_pred hcCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCc--hhhhhh--HHHHHHH
Q 025203 143 ESKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYK--KVQQYK--AQVRKRL 218 (256)
Q Consensus 143 ~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~k--p~~~~K--~~~r~~l 218 (256)
.+....+..+++++++.+..|..+.+--|--+.+ -.+.|+.+|+..|.+-+=.+...-.| ....|- -...+.+
T Consensus 147 ~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~q---QAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nv 223 (380)
T KOG2900|consen 147 KGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQ---QAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNV 223 (380)
T ss_pred ccchhHHHHHHHHHHHHHcCCceeeeeeccccHH---HHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHH
Confidence 3667889999999999999999999887766554 37889999998876533222111111 011121 1234455
Q ss_pred HhcCCcEE----EEEcCCccccCC
Q 025203 219 VKEGYRIW----GVVGDQWSSFEG 238 (256)
Q Consensus 219 ~~~g~~i~----~~iGD~~sDl~g 238 (256)
++.|.++| +-.|....|-.|
T Consensus 224 r~aGikvCsGGIlGLGE~e~DriG 247 (380)
T KOG2900|consen 224 REAGIKVCSGGILGLGESEDDRIG 247 (380)
T ss_pred HHhcceecccccccccccccceee
Confidence 66777763 345565555544
No 412
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=26.28 E-value=66 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+...++++.++++|+++.+.||-.-
T Consensus 87 ~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 87 KPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred HhHHHHHHHHHHCCCCEEEECCCCC
Confidence 6788999999999999999999874
No 413
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.08 E-value=3.9e+02 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
-.+.++.+.|.++|+.+.++|....
T Consensus 14 ~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 14 FPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred hHHHHHHHHHHhCCCEEEEEECCCc
Confidence 3567889999999999999998654
No 414
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=26.02 E-value=92 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
.++..++.+.|.+.|++|+ .|+. |.+.|+..|++.
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG-------Tak~L~e~GI~v 44 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG-------TAKLLAEAGVPV 44 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech-------HHHHHHHCCCeE
Confidence 4788999999999999995 7765 789999999863
No 415
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.87 E-value=1e+02 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHH----HhcCCCCc
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNL----IHVGYHGW 192 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L----~~~G~~~~ 192 (256)
..+|...+++++|+++|+++++.+.-.- |+--.+.+ ...|++++
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v--~~w~~~~~~~~~~~~Gvdg~ 110 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI--REWWAEVVKKLLVSLGVDGF 110 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH--HHHHHHHHHHhhccCCCCEE
Confidence 3568889999999999999999887543 33333333 44577653
No 416
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.86 E-value=5.4e+02 Score=23.91 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=40.7
Q ss_pred HHHHHHHcC-CeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRG-VKIFLVSSRRE---SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G-~~i~ivTnR~~---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+-+.+++.| -+++++|++.- ...+...+.|+..|+.. .+..+... .|....-.+..+..++.+.+.++-||
T Consensus 22 l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~---~~f~~v~~--np~~~~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 22 AMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS---VIYDGTQP--NPTTENVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE---EEeCCCCC--CcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 335567778 58888988642 23455777888888751 12222111 12121113344455667888888887
Q ss_pred CC
Q 025203 231 DQ 232 (256)
Q Consensus 231 D~ 232 (256)
-.
T Consensus 97 GG 98 (383)
T PRK09860 97 GG 98 (383)
T ss_pred Cc
Confidence 63
No 417
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=25.63 E-value=3.2e+02 Score=25.08 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=48.4
Q ss_pred HHHHcC--CeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-
Q 025203 158 EIKNRG--VKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ- 232 (256)
Q Consensus 158 ~L~~~G--~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~- 232 (256)
.+++.| -+++++|++.-. ..+...+.|++.| . +. .+..++ ++ ...-..+...+.+.+.+.++.||-.
T Consensus 27 ~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~-~~-~~~~~~----~t-~~~v~~~~~~~~~~~~d~IIaiGGGs 98 (350)
T PRK00843 27 VCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-D-VE-VVIVDE----AT-MEEVEKVEEKAKDVNAGFLIGVGGGK 98 (350)
T ss_pred HHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-C-ee-EEeCCC----CC-HHHHHHHHHHhhccCCCEEEEeCCch
Confidence 344444 489999987642 2333455666666 3 33 222221 11 1222345555666677888888874
Q ss_pred ccccCCC---CCCCcEEEecC
Q 025203 233 WSSFEGL---PKPKRTFKLPN 250 (256)
Q Consensus 233 ~sDl~ga---~~g~r~fklPn 250 (256)
..|+.+. ..|.+.+.+|-
T Consensus 99 v~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 99 VIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHHhcCCCEEEeCC
Confidence 5787654 24677777774
No 418
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=2.5e+02 Score=19.84 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=32.7
Q ss_pred EEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhc-CCc--EEEEEcCC
Q 025203 166 IFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKE-GYR--IWGVVGDQ 232 (256)
Q Consensus 166 i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~-g~~--i~~~iGD~ 232 (256)
+.+.|-..-.+-..+.+.|.+.|+. |..+.+..... +..+..++.. |.+ ..++|||+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~-~~~i~~~~~~~---------~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVD-YEEIDVDDDEP---------EEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCC-cEEEEecCCcH---------HHHHHHHHHhCCCCCcCEEEECCE
Confidence 3444444455566788888999997 55544443321 1233344443 554 47888886
No 419
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=25.38 E-value=2.9e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-cccHHHHHHHHHhcCCC
Q 025203 153 LNLFHEIKNRGVKIFLVSSRR-ESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~-~~~r~~T~~~L~~~G~~ 190 (256)
-+|...|+++|+.-++++|=. +.....|...+...||.
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~ 165 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFE 165 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCE
Confidence 467778889999999999854 45567788888887774
No 420
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=25.23 E-value=2.8e+02 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHHHHHcC--CeEEEEeCCCcccHHHHHHHHHh
Q 025203 153 LNLFHEIKNRG--VKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 153 ~ell~~L~~~G--~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
+++.+.|.++| .+|+|+||+..- ..+++.++.
T Consensus 64 lelq~~L~~~~~~~PVIfiTGhgDI--pmaV~AmK~ 97 (202)
T COG4566 64 LELQDRLAERGIRLPVIFLTGHGDI--PMAVQAMKA 97 (202)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCh--HHHHHHHHc
Confidence 67788888876 689999998753 346666553
No 421
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.22 E-value=1.3e+02 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW 192 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~ 192 (256)
.-+.+.-++..|++.|-.+.+.+..+-..++.+...|.+.|++.+
T Consensus 41 l~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 41 VTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVF 85 (406)
T ss_pred chHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEE
Confidence 346778888999999999999988887778888888988888743
No 422
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.89 E-value=88 Score=27.44 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
.-.+.+.+.++.++++|.+++.+|+.+...
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 345788999999999999999999987654
No 423
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.81 E-value=4.9e+02 Score=22.98 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc-ccHHHHH---HHHH-hcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE-SLRSYTV---DNLI-HVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR 224 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~-~~r~~T~---~~L~-~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~ 224 (256)
....+.++.|++.|...+-||-.+. ..+..|. +.|+ ..|++..-++..++.+ .....+ ....+...|.+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n-----~~~l~~-~L~~~~~~Gi~ 88 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGAT-----REEIRE-ILREYRELGIR 88 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCC-----HHHHHH-HHHHHHHCCCC
Confidence 4555666677777777777776654 2233322 3444 4577755555555421 111222 22334556765
Q ss_pred -EEEEEcCCcc
Q 025203 225 -IWGVVGDQWS 234 (256)
Q Consensus 225 -i~~~iGD~~s 234 (256)
+.+.-||...
T Consensus 89 nvL~l~GD~~~ 99 (272)
T TIGR00676 89 HILALRGDPPK 99 (272)
T ss_pred EEEEeCCCCCC
Confidence 3446777764
No 424
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.76 E-value=3.2e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHcCCeEEEEeCCC
Q 025203 138 EAWMKESKAPALEHTLNLFHEIKNRGVKIFLVSSRR 173 (256)
Q Consensus 138 ~~wv~~~~~~~~pg~~ell~~L~~~G~~i~ivTnR~ 173 (256)
.+|+.....+.-+.+.+.++.....|..++++.-..
T Consensus 677 ~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~ 712 (951)
T KOG0207|consen 677 KEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNG 712 (951)
T ss_pred HHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECC
Confidence 356666666666777777777777777777776554
No 425
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.71 E-value=2.8e+02 Score=20.26 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
-...+++.|++.|.++.++...++
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcH
Confidence 345667777776667777777654
No 426
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=24.59 E-value=1.4e+02 Score=27.89 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCC
Q 025203 78 YKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLST 118 (256)
Q Consensus 78 Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn 118 (256)
+..-...+.+.+..++... ....-...+++||.||.++-.
T Consensus 315 ~~~~~~~ia~~~~~~~~~~-~~~~~~v~vvl~d~~g~~l~~ 354 (361)
T PRK00075 315 GEKLYDRIAERILERAREY-VGGSIEVGVVLFDRDGQILGR 354 (361)
T ss_pred hHHHHHHHHHHHHHHHHHh-cCCCceEEEEEEeCCCCEEEE
Confidence 4445555556666666553 222234578999999998864
No 427
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=24.55 E-value=3.1e+02 Score=25.35 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCC------cccHH----HHHHHHHhcCCCCc----ceEEEecCCCCCchhhhhhHHHHHHH
Q 025203 153 LNLFHEIKNRGVKIFLVSSRR------ESLRS----YTVDNLIHVGYHGW----ASLELRGLEDEYKKVQQYKAQVRKRL 218 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~------~~~r~----~T~~~L~~~G~~~~----~~lilr~~~~~~kp~~~~K~~~r~~l 218 (256)
.+++...+++|++|.+..+-+ +..|+ ..++.+++.||++. +.....+..+ ...-..+-.++|.++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d-~~~~t~llkelr~~l 145 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPE-YYALTELVKETTKAF 145 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcch-HHHHHHHHHHHHHHH
Confidence 478889999999999876422 12233 34556678888874 2211111000 101112335677777
Q ss_pred Hhc--CCcEEEEEc
Q 025203 219 VKE--GYRIWGVVG 230 (256)
Q Consensus 219 ~~~--g~~i~~~iG 230 (256)
.+. ++.+++.+.
T Consensus 146 ~~~~~~~~Lsvav~ 159 (358)
T cd02875 146 KKENPGYQISFDVA 159 (358)
T ss_pred hhcCCCcEEEEEEe
Confidence 665 566655443
No 428
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.51 E-value=1e+02 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 147 PALEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
.--+.+.++++.++++|.+++.+|+.+...
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSP 222 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 345889999999999999999999987654
No 429
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=24.21 E-value=3.5e+02 Score=21.33 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCccc-------HHHHHHHHHhcCCCCcceEEEe
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRESL-------RSYTVDNLIHVGYHGWASLELR 198 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~~~-------r~~T~~~L~~~G~~~~~~lilr 198 (256)
-+..+.+.++..|+++.++..|++.. ............++.+..+++.
T Consensus 9 va~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~t 63 (136)
T PF13478_consen 9 VARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMT 63 (136)
T ss_dssp CHHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEc
Confidence 45677888999999999999998622 1112333355566655555544
No 430
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.16 E-value=5.4e+02 Score=24.10 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=37.2
Q ss_pred HHHHHHHcC-CeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRG-VKIFLVSSRRE---SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G-~~i~ivTnR~~---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+-+.+++.| -+++++|++.- ...+...+.|++.|+. +. +. +.. ...|....-.+..+..++.+.+.++.||
T Consensus 40 l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~-~~--~~-~~v-~~~P~~~~v~~~~~~~r~~~~D~IiavG 114 (395)
T PRK15454 40 CGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIA-MT--LW-PCP-VGEPCITDVCAAVAQLRESGCDGVIAFG 114 (395)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCe-EE--EE-CCC-CCCcCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 335667777 45556666542 2235567888888875 21 12 111 1112111112333445566888777776
Q ss_pred CC
Q 025203 231 DQ 232 (256)
Q Consensus 231 D~ 232 (256)
-.
T Consensus 115 GG 116 (395)
T PRK15454 115 GG 116 (395)
T ss_pred Ch
Confidence 54
No 431
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=24.02 E-value=1.5e+02 Score=22.72 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHh-cCCC
Q 025203 149 LEHTLNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLIH-VGYH 190 (256)
Q Consensus 149 ~pg~~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~~-~G~~ 190 (256)
.+.++++.+.+.+. |++++ .|.. |.+.|++ .|++
T Consensus 11 K~~~~~~a~~~~~ll~Gf~i~-AT~g-------Ta~~L~~~~Gi~ 47 (115)
T cd01422 11 KEDLVEFVKQHQELLSRHRLV-ATGT-------TGLLIQEATGLT 47 (115)
T ss_pred hHHHHHHHHHHHHHhcCCEEE-Eech-------HHHHHHHhhCCc
Confidence 37778888888888 99985 6665 6778887 7886
No 432
>PHA03376 BARF1; Provisional
Probab=24.01 E-value=57 Score=28.01 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHHHhhhccc
Q 025203 1 MARNSVLILAFTSLCIASALAD 22 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (256)
|||.+.-+|+|++++ ||+.
T Consensus 1 ~~~~~~~Ll~La~l~---~sg~ 19 (221)
T PHA03376 1 MARFIAQLLLLASCV---AAGQ 19 (221)
T ss_pred ChhHHHHHHHHHHHh---ccCc
Confidence 899988888877777 5554
No 433
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.00 E-value=3.3e+02 Score=20.73 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC-cEEEEE
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY-RIWGVV 229 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~-~i~~~i 229 (256)
|..-+-..++.+|+++.++-.... ..+.+....=...+.+.++.......+.. .+..+.+++.|+ ++.+++
T Consensus 15 G~~~~~~~l~~~G~~vi~lG~~vp-----~e~~~~~a~~~~~d~V~iS~~~~~~~~~~---~~~~~~L~~~~~~~i~i~~ 86 (122)
T cd02071 15 GAKVIARALRDAGFEVIYTGLRQT-----PEEIVEAAIQEDVDVIGLSSLSGGHMTLF---PEVIELLRELGAGDILVVG 86 (122)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEcccchhhHHHH---HHHHHHHHhcCCCCCEEEE
Q ss_pred c
Q 025203 230 G 230 (256)
Q Consensus 230 G 230 (256)
|
T Consensus 87 G 87 (122)
T cd02071 87 G 87 (122)
T ss_pred E
No 434
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.00 E-value=5.7e+02 Score=24.56 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=52.0
Q ss_pred CcchHHHHHH-HHHHHHcCCeEEEEeCCCc-------------ccHHHHHHHHHhcCCCCcceEEEecCCCC-----Cch
Q 025203 146 APALEHTLNL-FHEIKNRGVKIFLVSSRRE-------------SLRSYTVDNLIHVGYHGWASLELRGLEDE-----YKK 206 (256)
Q Consensus 146 ~~~~pg~~el-l~~L~~~G~~i~ivTnR~~-------------~~r~~T~~~L~~~G~~~~~~lilr~~~~~-----~kp 206 (256)
+++-|-+++. ++..++.|.++.|...+.+ ..++...+.-.+.||+ -+.++|+++.-- ..|
T Consensus 23 Csahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~-~~~iiLGGDHLGPn~Wq~lp 101 (426)
T PRK15458 23 CSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFP-QEALILGGDHLGPNRWQNLP 101 (426)
T ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCC-hhhEEeecCCCCCccccCCC
Confidence 6777888988 8899999999888766653 3455555666778998 368888886421 122
Q ss_pred hh---hhhHHHHHHHHhcCCcEE
Q 025203 207 VQ---QYKAQVRKRLVKEGYRIW 226 (256)
Q Consensus 207 ~~---~~K~~~r~~l~~~g~~i~ 226 (256)
.. ..-..+..+-.+.||+.+
T Consensus 102 a~eAM~~A~~li~ayV~AGF~kI 124 (426)
T PRK15458 102 AAQAMANADDLIKSYVAAGFKKI 124 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCceE
Confidence 11 222234444556799854
No 435
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=23.75 E-value=3e+02 Score=29.12 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 145 KAPALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
.+|.-|.++..+++|++.+++++.+||-..
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnp 702 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNP 702 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCc
Confidence 578899999999999999999999999654
No 436
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.73 E-value=6.4e+02 Score=24.02 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCCh
Q 025203 80 ADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTI 119 (256)
Q Consensus 80 ~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~ 119 (256)
+..+.++++++...+.. .+.+.+.| .|+|...+.
T Consensus 227 rs~e~V~~Ei~~~~~~~-----~~~~~i~f-~Dd~f~~~~ 260 (472)
T TIGR03471 227 RSAESVIEEVKYALENF-----PEVREFFF-DDDTFTDDK 260 (472)
T ss_pred CCHHHHHHHHHHHHHhc-----CCCcEEEE-eCCCCCCCH
Confidence 46778888877655332 23456667 578776544
No 437
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.67 E-value=5e+02 Score=22.69 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHhcCCcE-EEEEcCCc
Q 025203 214 VRKRLVKEGYRI-WGVVGDQW 233 (256)
Q Consensus 214 ~r~~l~~~g~~i-~~~iGD~~ 233 (256)
..+.|.+.|++- ++++|...
T Consensus 109 a~~~Li~~Gh~~~I~~i~~~~ 129 (279)
T PF00532_consen 109 ATEYLIKKGHRRPIAFIGGPE 129 (279)
T ss_dssp HHHHHHHTTCCSTEEEEEEST
T ss_pred HHHHHHhcccCCeEEEEecCc
Confidence 444555666665 55555543
No 438
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=23.65 E-value=3.8e+02 Score=26.35 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
......++.++++++|+++.++--+++ ..+.|++.|+..
T Consensus 511 g~~~L~~l~~~l~~~g~~l~l~~~~~~-----v~~~l~~~gl~~ 549 (563)
T TIGR00815 511 GIHALEELRKELKARGIQLLLANPNKA-----VRSTLKRGGLVE 549 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCChH-----HHHHHHHCCchh
Confidence 345667889999999999988775543 577888888854
No 439
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=23.64 E-value=2.3e+02 Score=26.58 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhc--------CCcchHHHHHHHHHHHHcCCeEEEEe
Q 025203 133 NASSWEAWMKES--------KAPALEHTLNLFHEIKNRGVKIFLVS 170 (256)
Q Consensus 133 ~~~~~~~wv~~~--------~~~~~pg~~ell~~L~~~G~~i~ivT 170 (256)
+.+.+.+|.+.. -+|-+|++.+++++|.++|+.+.+-=
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GH 197 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGH 197 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeC
Confidence 457788888742 26778999999999999999888743
No 440
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=23.58 E-value=64 Score=29.98 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=14.4
Q ss_pred CCCcEEEEecCCCccC
Q 025203 102 DGKDAWIFDVDDTLLS 117 (256)
Q Consensus 102 ~~~~avvfDiDgTlld 117 (256)
++.+++-||+|-||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 5678999999999998
No 441
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.58 E-value=1.5e+02 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
-+.+.-++..|++.|-.|++.+..+-..++.+...|...|++.
T Consensus 46 ~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v 88 (413)
T cd00401 46 TVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPV 88 (413)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceE
Confidence 3667888889999999999888888777888888888888874
No 442
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=23.45 E-value=5.8e+02 Score=23.41 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=41.8
Q ss_pred HHHHHHHcC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRG-VKIFLVSSRRES---LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G-~~i~ivTnR~~~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+-+.+++.| -+++++|++... ..+...+.|++.|+.. .++.... ..|....-.+..+..++.+.+.++.||
T Consensus 15 l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~---~~~~~v~--~~p~~~~v~~~~~~~~~~~~d~IIaiG 89 (370)
T cd08192 15 LPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAA---ALFDEVP--PNPTEAAVEAGLAAYRAGGCDGVIAFG 89 (370)
T ss_pred HHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeE---EEeCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334566667 488899987532 3455677788877752 1121111 112121112334445566778777777
Q ss_pred C-CccccC
Q 025203 231 D-QWSSFE 237 (256)
Q Consensus 231 D-~~sDl~ 237 (256)
- +.-|..
T Consensus 90 GGSviD~a 97 (370)
T cd08192 90 GGSALDLA 97 (370)
T ss_pred CchHHHHH
Confidence 6 345654
No 443
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.24 E-value=1.1e+02 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
.+++.++.+.|.+.|++|+ .|+. |.+.|+..|++.
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~G-------Tak~L~e~GI~v 48 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGG-------TAKLLAEAGIPV 48 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecch-------HHHHHHHCCCee
Confidence 3788999999999999995 6655 789999999863
No 444
>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.18 E-value=2.4e+02 Score=25.03 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=69.9
Q ss_pred ccccccccceeeeeeecCccCccccchhhHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCcc
Q 025203 37 DSLKTYCESWRINVELNNIREFEVVPQECIDHIKKYMTSSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLL 116 (256)
Q Consensus 37 ~~~~~~c~s~~~~~e~nn~~~~~~vP~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTll 116 (256)
+....-|..||+..|+-+++- +-+ .|..++.- .+...+...-+.+. ..+..++..+|+-=-|++=
T Consensus 30 d~e~~r~g~~r~~a~~~~L~v--~~g-d~~v~~~g-----------~~~e~~~l~al~e~-~r~k~gkr~iiI~NAG~lg 94 (253)
T KOG1204|consen 30 DDEALRYGVARLLAELEGLKV--AYG-DDFVHVVG-----------DITEEQLLGALREA-PRKKGGKRDIIIHNAGSLG 94 (253)
T ss_pred chHHHHHhhhcccccccceEE--Eec-CCcceech-----------HHHHHHHHHHHHhh-hhhcCCceeEEEecCCCcc
Confidence 345567999999999888874 233 44322211 11222222222233 2234457888888888888
Q ss_pred CChHHHHHhccCCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHHHc--CCeEEEEeCC
Q 025203 117 STIPYFKKHGFGGERLNASSWEAWMKESKAPALEHTLNLFHEIKNR--GVKIFLVSSR 172 (256)
Q Consensus 117 dn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~--G~~i~ivTnR 172 (256)
+.+.... +.-|.+.|+++++..--.++.=...++..+++. .-.+++||+-
T Consensus 95 dvsk~~~------~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~ 146 (253)
T KOG1204|consen 95 DVSKGAV------DLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSL 146 (253)
T ss_pred chhhccC------CcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecch
Confidence 8664321 234678899888776555555556888888888 4556677663
No 445
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.14 E-value=96 Score=24.95 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+...++++.++++|+++.+-||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 6688999999999999999999643
No 446
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.12 E-value=5.9e+02 Score=23.33 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHcC-CeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEc
Q 025203 155 LFHEIKNRG-VKIFLVSSRRE---SLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVG 230 (256)
Q Consensus 155 ll~~L~~~G-~~i~ivTnR~~---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iG 230 (256)
+-+.+++.| -+++++|++.- ...+...+.|++.|+. + .++.... .. |....-....+.+++.+.+.++.||
T Consensus 14 l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~-~--~~~~~~~-~~-p~~~~v~~~~~~~~~~~~d~IiaiG 88 (370)
T cd08551 14 LGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIE-V--VIFDGVE-PN-PTLSNVDAAVAAYREEGCDGVIAVG 88 (370)
T ss_pred HHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCe-E--EEECCCC-CC-CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334455656 58889998753 2344567777777774 2 2222211 11 2121113344455566788888887
Q ss_pred CC-ccccC
Q 025203 231 DQ-WSSFE 237 (256)
Q Consensus 231 D~-~sDl~ 237 (256)
-. .-|+.
T Consensus 89 GGs~~D~A 96 (370)
T cd08551 89 GGSVLDTA 96 (370)
T ss_pred CchHHHHH
Confidence 74 46664
No 447
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.08 E-value=83 Score=29.05 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=31.3
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+.++-.+-...++.+++++|+.+.+ |.|.... ..+.|+..||+
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~i-T~rd~~~---v~~LLd~ygf~ 50 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLI-TCRDFGV---VTELLDLYGFP 50 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEE-EEeecCc---HHHHHHHhCCC
Confidence 3455556667889999999997765 4555433 57888889997
No 448
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.02 E-value=1.2e+02 Score=27.52 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
...+|...+++++|+++|+++++...
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 35678899999999999999997554
No 449
>PF15240 Pro-rich: Proline-rich
Probab=22.98 E-value=56 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.6
Q ss_pred hHHHHHHHHHH
Q 025203 5 SVLILAFTSLC 15 (256)
Q Consensus 5 ~~~~~~~~~~~ 15 (256)
||+||.+++|.
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 34444444443
No 450
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=22.80 E-value=1.1e+02 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
--+.+.+.++.++++|.+++.+|+.+.
T Consensus 106 ~t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 106 ESSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 348899999999999999999999864
No 451
>PRK06242 flavodoxin; Provisional
Probab=22.80 E-value=3.6e+02 Score=20.81 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHH-cCCeEEEEeCCCc---ccHHHHHHHHHhcCCCC
Q 025203 148 ALEHTLNLFHEIKN-RGVKIFLVSSRRE---SLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 148 ~~pg~~ell~~L~~-~G~~i~ivTnR~~---~~r~~T~~~L~~~G~~~ 191 (256)
+.|.+.++++.+.. .|-++++++.-.. .......+.|+..|+..
T Consensus 58 ~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~ 105 (150)
T PRK06242 58 FHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEI 105 (150)
T ss_pred cCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEE
Confidence 45778888888765 5777776644321 22344566677778864
No 452
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=22.78 E-value=1.1e+02 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
--+.+.+.++.++++|.+++.+|+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~~ 85 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSPN 85 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 347889999999999999999999754
No 453
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=22.77 E-value=3.9e+02 Score=21.20 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEE
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWG 227 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~ 227 (256)
.+.+..+|=+.|++.|+.+.++.|.+... ..+.++..|+ ..++...+-.. ....--..+++.+.+.|.....
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~---~~V~~~~~~~~--~~~~rd~~v~~~l~~~~i~~~~ 122 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEV---LPELAKEYGA---TAVYFNEEYTP--YERRRDERVRKALKKHGIKVHT 122 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHH---HHHHHHHHTE---SEEEEE---SH--HHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHH---HHHHHHhcCc---CeeEeccccCH--HHHHHHHHHHHHHHhcceEEEE
Confidence 45788888899999999999999996543 3344455665 34444432110 1111124566677777877766
Q ss_pred EEcCCcc
Q 025203 228 VVGDQWS 234 (256)
Q Consensus 228 ~iGD~~s 234 (256)
+-|+...
T Consensus 123 ~~~~~L~ 129 (165)
T PF00875_consen 123 FDDHTLV 129 (165)
T ss_dssp E--SSSS
T ss_pred ECCcEEE
Confidence 6666543
No 454
>PLN00094 aconitate hydratase 2; Provisional
Probab=22.69 E-value=5.5e+02 Score=27.21 Aligned_cols=103 Identities=10% Similarity=0.102 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCChHHHHHhccCCCCCCHH---HHHHHHHhcCCcchHH
Q 025203 75 SSQYKADSQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTIPYFKKHGFGGERLNAS---SWEAWMKESKAPALEH 151 (256)
Q Consensus 75 ~~~Y~~d~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~~~~~~~~~g~~~~~~~---~~~~wv~~~~~~~~pg 151 (256)
+-.|..++-+....|.-|. +. ..-.++....||-++|-.-... .. =..+.++.. --...+.+...+-+..
T Consensus 208 gn~~a~~v~~swa~aewf~-~~-~~~~~~i~~~vfkv~ge~ntdd-ls----pa~~a~sr~diplha~~m~~~~~~~~~~ 280 (938)
T PLN00094 208 GNAYATQVMESWADAEWFT-KK-PPVPEKITVTVFKVTGETNTDD-LS----PAQDAWSRPDIPLHALAMLKNPREGIQG 280 (938)
T ss_pred cCHHHHHHHHHHhhhhhhh-cC-CCCcceeEEEEEEecCcCcccc-CC----CcccccCCCCchhHHHHHhcCCCCCccc
Confidence 3566666666666665443 22 2224567899999998543211 00 001112100 0001121122222222
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC--cccHHHHHHHH
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRR--ESLRSYTVDNL 184 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~--~~~r~~T~~~L 184 (256)
.++.+..|+++|++++++=..- ...|+.....|
T Consensus 281 ~~~~i~~lk~~g~~iivvG~nfG~GSSResA~nsl 315 (938)
T PLN00094 281 PIAQIEELKKKGHPLAYVGDVVGTGSSRKSATNSV 315 (938)
T ss_pred HHHHHHHHHHcCCceEEECCceecCCchHHHHHHH
Confidence 8889999999999999883321 24466666666
No 455
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.55 E-value=83 Score=26.99 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCc
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+.++++.+++.|+.+++.||-.-
T Consensus 56 l~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 56 ATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 68999999999999999999854
No 456
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=22.52 E-value=5.8e+02 Score=23.03 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhcCCcchHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 132 LNASSWEAWMKESKAPALEHTLNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 132 ~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
++++.|++|+ .|..+++++.+++. +..+..+.+.... ..+.+...|..
T Consensus 207 lsp~~f~ef~-------~p~~k~i~~~i~~~~~~~~ilh~cg~~~~----~~~~~~~~~~~ 256 (338)
T TIGR01464 207 LSPEDFEEFV-------LPYLKKIIEEVKARLPNVPVILFAKGAGH----LLEELAETGAD 256 (338)
T ss_pred CCHHHHHHHH-------HHHHHHHHHHHHHhCCCCCEEEEeCCcHH----HHHHHHhcCCC
Confidence 4567788885 48889999999987 6777777775432 35566666654
No 457
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.49 E-value=1.2e+02 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
|.+.+.++.++++|.+++.+|+.+...
T Consensus 132 ~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 132 PYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 778999999999999999999987654
No 458
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=22.47 E-value=1.2e+02 Score=23.33 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 151 HTLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 151 g~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
-+.++.+.|.++|+.+.++|.+...
T Consensus 17 ~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 17 VVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3678899999999999999987654
No 459
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=22.42 E-value=1.3e+02 Score=21.14 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHcCC-eEEEEeCCC-----cccHHHHHHHHHhcCCC
Q 025203 147 PALEHTLNLFHEIKNRGV-KIFLVSSRR-----ESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 147 ~~~pg~~ell~~L~~~G~-~i~ivTnR~-----~~~r~~T~~~L~~~G~~ 190 (256)
.++.-+.++++.++++|. .+.|+||+. ...++...++|.+ ++.
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~ 58 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhc
Confidence 345667778888877764 555999987 2346677788877 665
No 460
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.18 E-value=4.7e+02 Score=23.82 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=45.2
Q ss_pred HHHHHcCCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-c
Q 025203 157 HEIKNRGVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-W 233 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~ 233 (256)
+.+++.|-+++++|++... ..+...+.|+..|+.. . .+..-..+ |....-....+..++.+.+.++.||=. .
T Consensus 16 ~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~-~-~~~~~~~~---p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 16 EVCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIEI-T-DFIWYGGE---STYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred HHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeE-E-EEEecCCC---CCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 4455567899999997432 2344556677777742 1 11111111 111111233344455677777777754 4
Q ss_pred cccCCC---CCCCcEEEec
Q 025203 234 SSFEGL---PKPKRTFKLP 249 (256)
Q Consensus 234 sDl~ga---~~g~r~fklP 249 (256)
.|...+ ..|...+.+|
T Consensus 91 ~D~aK~ia~~~~~p~i~VP 109 (345)
T cd08171 91 IDTVKVLADKLGKPVFTFP 109 (345)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 566432 1244555555
No 461
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.09 E-value=1.3e+02 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
+.+.++++.++++|.+++.+|+...
T Consensus 76 ~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 76 EKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4578899999999999999999864
No 462
>PLN02834 3-dehydroquinate synthase
Probab=21.99 E-value=5.4e+02 Score=24.62 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=49.9
Q ss_pred cCCeEEEEeCCCcc--cHHHHHHHHHhcCCCC-cceEEEecCCCCCchhhhhhHHHHHHHHhcCCc---EEEEEcCC-cc
Q 025203 162 RGVKIFLVSSRRES--LRSYTVDNLIHVGYHG-WASLELRGLEDEYKKVQQYKAQVRKRLVKEGYR---IWGVVGDQ-WS 234 (256)
Q Consensus 162 ~G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~-~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~---i~~~iGD~-~s 234 (256)
.|-++++||++.-. ..+...+.|+..|+.. .+..++. +.+..|+ ...-..+...+.+.|.+ .++.||-. ..
T Consensus 99 ~g~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~-~gE~~ks-l~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~ 176 (433)
T PLN02834 99 HGKRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILP-DGEKYKD-METLMKVFDKALESRLDRRCTFVALGGGVIG 176 (433)
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEec-CCcCCCC-HHHHHHHHHHHHhcCCCcCcEEEEECChHHH
Confidence 46789999987532 2344566777778752 1222333 2222332 22223444556666665 77788875 57
Q ss_pred ccCCC-----CCCCcEEEecC
Q 025203 235 SFEGL-----PKPKRTFKLPN 250 (256)
Q Consensus 235 Dl~ga-----~~g~r~fklPn 250 (256)
|+.+. ..|.+.+.+|-
T Consensus 177 D~ak~~A~~y~rgiplI~VPT 197 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 88763 24777787775
No 463
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=21.98 E-value=1.2e+02 Score=27.89 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
-+.+++.++.++++|.+++-+||.+..
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S 131 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADS 131 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 378999999999999999999998753
No 464
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.96 E-value=7.3e+02 Score=23.98 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcC-CeEE-EEeCCCccc--HHHHHHHHHhcCCC
Q 025203 152 TLNLFHEIKNRG-VKIF-LVSSRRESL--RSYTVDNLIHVGYH 190 (256)
Q Consensus 152 ~~ell~~L~~~G-~~i~-ivTnR~~~~--r~~T~~~L~~~G~~ 190 (256)
+.++++.+.++| ..+- .+..|.... -+...+.|+++|+.
T Consensus 257 ~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 257 FQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred HHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 467888888776 5553 344453321 13356777778874
No 465
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=21.96 E-value=1.5e+02 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcc
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRES 175 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~ 175 (256)
+.++++..++.|.++.++|+.++.
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~ 94 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEE 94 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHH
T ss_pred HHHHHHHHHHcCCEEEEEcCCCcc
Confidence 788999999999999999999764
No 466
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=21.89 E-value=1.7e+02 Score=27.14 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHHHcCCeEEEEeCCC--cccHHHHHHHHHhcCC
Q 025203 146 APALEHTLNLFHEIKNRGVKIFLVSSRR--ESLRSYTVDNLIHVGY 189 (256)
Q Consensus 146 ~~~~pg~~ell~~L~~~G~~i~ivTnR~--~~~r~~T~~~L~~~G~ 189 (256)
..-+.-+.+++++|+++|+++.+||=-- ...+....+++.++-.
T Consensus 180 TAGLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~pV~~e~i~~H~m 225 (341)
T PF02547_consen 180 TAGLHFTEELLERLKAKGVEIAFVTLHVGLGTFRPVRVEDIEEHKM 225 (341)
T ss_dssp SGGGG--HHHHHHHHHHTEEEEEEEEEECGGGG-------------
T ss_pred CCCCCCCHHHHHHHHHCCCeEEEEEEEeccCcccccCcCcccCCCC
Confidence 3456778999999999999999999532 2334444555554443
No 467
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=21.77 E-value=3.5e+02 Score=20.23 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVV 229 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~i 229 (256)
+-+.++.+.|+++|+.+.++|.+.+. .+.....|+.. ..+ ........+.-.+ -.+++.+++.+++++...
T Consensus 11 ~~~~~~~~~L~~~g~~V~ii~~~~~~-----~~~~~~~~i~~-~~~--~~~~k~~~~~~~~-~~l~k~ik~~~~DvIh~h 81 (139)
T PF13477_consen 11 TFIYNLAKELKKRGYDVHIITPRNDY-----EKYEIIEGIKV-IRL--PSPRKSPLNYIKY-FRLRKIIKKEKPDVIHCH 81 (139)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCCc-----hhhhHhCCeEE-EEe--cCCCCccHHHHHH-HHHHHHhccCCCCEEEEe
Confidence 34678899999999999999996653 23333445531 111 1011111111112 256777788888886544
Q ss_pred c
Q 025203 230 G 230 (256)
Q Consensus 230 G 230 (256)
+
T Consensus 82 ~ 82 (139)
T PF13477_consen 82 T 82 (139)
T ss_pred c
Confidence 4
No 468
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=21.56 E-value=1.7e+02 Score=24.00 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHH
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLI 185 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~ 185 (256)
.++++.+++.|++++++|.......+...+.|+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence 356788999999999999987766555555554
No 469
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.56 E-value=6.4e+02 Score=23.21 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=39.9
Q ss_pred HHHHHcC-CeEEEEeCCC--cc-cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC
Q 025203 157 HEIKNRG-VKIFLVSSRR--ES-LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ 232 (256)
Q Consensus 157 ~~L~~~G-~~i~ivTnR~--~~-~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~ 232 (256)
+.+++.| -+++++|++. .. ..+...+.|++.|+. +. +. +..... |....-.+..+.+++.+.+.++.||-.
T Consensus 19 ~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~-~~--~~-~~v~~~-p~~~~v~~~~~~~~~~~~D~IIaiGGG 93 (376)
T cd08193 19 ELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIE-VT--VF-DDVEAD-PPEAVVEAAVEAARAAGADGVIGFGGG 93 (376)
T ss_pred HHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCe-EE--EE-CCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3455555 6888899875 21 244566677777774 21 12 111111 111111234445556678877777755
Q ss_pred c-cccC
Q 025203 233 W-SSFE 237 (256)
Q Consensus 233 ~-sDl~ 237 (256)
. -|..
T Consensus 94 s~iD~a 99 (376)
T cd08193 94 SSMDVA 99 (376)
T ss_pred hHHHHH
Confidence 3 5554
No 470
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.45 E-value=6.2e+02 Score=23.00 Aligned_cols=48 Identities=15% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhcCCcchHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 132 LNASSWEAWMKESKAPALEHTLNLFHEIKNR--GVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 132 ~~~~~~~~wv~~~~~~~~pg~~ell~~L~~~--G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
++++.|++|+ .|..+++++.+++. +..+..+.+.... ..+.+...|..
T Consensus 213 lsp~~f~ef~-------~P~~k~i~~~i~~~~~~~~ilh~cg~~~~----~~~~~~~~~~~ 262 (346)
T PRK00115 213 LSPADYREFV-------LPYMKRIVAELKREHPDVPVILFGKGAGE----LLEAMAETGAD 262 (346)
T ss_pred CCHHHHHHHH-------HHHHHHHHHHHHHhCCCCCEEEEcCCcHH----HHHHHHhcCCC
Confidence 4467788875 48889999999988 4778888886543 24556666654
No 471
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.43 E-value=1.2e+02 Score=27.14 Aligned_cols=27 Identities=0% Similarity=0.206 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCc
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRE 174 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~ 174 (256)
--+.+++.++.++++|.+++.+|+.+.
T Consensus 101 ~t~~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 101 GAKELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 347899999999999999999999765
No 472
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.36 E-value=2e+02 Score=22.04 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
-+|...++.++++++|+.++.||..+. +...+.+++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~---~~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSP---FSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCH---HHHHHHHHhcCCC
Confidence 568888899999999999999887543 2355666777764
No 473
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=80 Score=29.28 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEeC
Q 025203 148 ALEHTLNLFHEIKNRGVKIFLVSS 171 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~~i~ivTn 171 (256)
-+.-+.++|++|+++|+.+.+||=
T Consensus 184 GLHFt~~LL~kLk~kGv~~afvTL 207 (348)
T COG0809 184 GLHFTEELLEKLKAKGVEIAFVTL 207 (348)
T ss_pred CCCCCHHHHHHHHHCCceEEEEEE
Confidence 355678999999999999999994
No 474
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=21.20 E-value=1.1e+02 Score=24.31 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCcchHH--HHHHHHHHHHcCCeEEEEe
Q 025203 135 SSWEAWMKESKAPALEH--TLNLFHEIKNRGVKIFLVS 170 (256)
Q Consensus 135 ~~~~~wv~~~~~~~~pg--~~ell~~L~~~G~~i~ivT 170 (256)
.++++|.++.+.|.+.| ++.+.++|+++|-..+.+|
T Consensus 94 ~sL~~~L~~~~ipgi~gvDTRaLt~~lR~~G~m~g~I~ 131 (131)
T PF00988_consen 94 MSLDEWLKEHGIPGISGVDTRALTRKLREKGSMKGVIT 131 (131)
T ss_dssp B-HHHHHHHTT-EEEESS-HHHHHHHHHHH--EEEEEE
T ss_pred CCHHHHHHHCCCeeeeCCcHHHHHHHHHhcCCceEEEC
Confidence 47899999988888866 7889999999998777664
No 475
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.18 E-value=1.4e+02 Score=23.51 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHcCC-eE-EEEeCCCcccHHHHHHHHHhcCCCCc
Q 025203 148 ALEHTLNLFHEIKNRGV-KI-FLVSSRRESLRSYTVDNLIHVGYHGW 192 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G~-~i-~ivTnR~~~~r~~T~~~L~~~G~~~~ 192 (256)
-.+.+.++++.|+++|. .+ +++=|..... -.+.|+.+|+..+
T Consensus 66 ~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~---~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 66 HLTLVPALRKELDKLGRPDILVVVGGVIPPQ---DFDELKEMGVAEI 109 (132)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCChH---hHHHHHHCCCCEE
Confidence 34677888888999875 33 3443333222 3567899999753
No 476
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=21.10 E-value=1.1e+02 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.9
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 165 KIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 165 ~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
+++||||.+..-+..+.+.|+.+||-.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDlGyyc 28 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDLGYYC 28 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhcCeee
Confidence 689999999988888999999999853
No 477
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=21.02 E-value=2.1e+02 Score=30.66 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcc----------cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHH
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRES----------LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLV 219 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~----------~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~ 219 (256)
+...+.++.+.++|+++.-+.-|.-. .|+..+.+|.-.|+ +.+.+ +-||.. .+..+.++
T Consensus 601 ~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGl-----i~~~d---~lr~~~---~~~I~~l~ 669 (1054)
T TIGR01657 601 SDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGF-----IVFEN---PLKPDT---KEVIKELK 669 (1054)
T ss_pred hhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEE-----EEEec---CCCccH---HHHHHHHH
Confidence 45667788999999999987766421 11112222222222 12222 122222 34557788
Q ss_pred hcCCcEEEEEcCCc
Q 025203 220 KEGYRIWGVVGDQW 233 (256)
Q Consensus 220 ~~g~~i~~~iGD~~ 233 (256)
+.|.++++.-||+.
T Consensus 670 ~agi~v~miTGD~~ 683 (1054)
T TIGR01657 670 RASIRTVMITGDNP 683 (1054)
T ss_pred HCCCeEEEECCCCH
Confidence 89999999999996
No 478
>COG2237 Predicted membrane protein [Function unknown]
Probab=20.87 E-value=2.4e+02 Score=26.48 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=25.3
Q ss_pred CCcchHHHHHHHHHHHHcC--CeEEEEeCCCc
Q 025203 145 KAPALEHTLNLFHEIKNRG--VKIFLVSSRRE 174 (256)
Q Consensus 145 ~~~~~pg~~ell~~L~~~G--~~i~ivTnR~~ 174 (256)
.+..+-++++++++|+++| +.|+++||-+.
T Consensus 46 D~Nalf~alkiydeLk~~geDveIA~vsG~~~ 77 (364)
T COG2237 46 DVNALFAALKIYDELKAKGEDVEIAVVSGDKD 77 (364)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEEecCCC
Confidence 3567889999999999998 88999999654
No 479
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=20.86 E-value=4.5e+02 Score=24.21 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=46.1
Q ss_pred HHHHHcCCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEEEEEcCC-c
Q 025203 157 HEIKNRGVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIWGVVGDQ-W 233 (256)
Q Consensus 157 ~~L~~~G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~~~iGD~-~ 233 (256)
+.+++.|-++++||++... ..+...+.|+..|+...+. ...+ +..+. .-....+.+++.+.+.++.||=. .
T Consensus 23 ~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~-~~~~--ep~~~---~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 23 EYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFE-VFNG--ECSDN---EIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred HHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEE-EeCC--CCCHH---HHHHHHHHHHhcCCCEEEEecChHH
Confidence 4456667889999987532 2334455667777752111 1121 22211 11234445555677777777754 4
Q ss_pred cccCCCC---CCCcEEEec
Q 025203 234 SSFEGLP---KPKRTFKLP 249 (256)
Q Consensus 234 sDl~ga~---~g~r~fklP 249 (256)
.|+..+- .+.+.+.+|
T Consensus 97 ~D~aK~iA~~~~~p~i~IP 115 (366)
T PRK09423 97 LDTAKAVADYLGVPVVIVP 115 (366)
T ss_pred HHHHHHHHHHcCCCEEEeC
Confidence 6665431 345566655
No 480
>PLN02494 adenosylhomocysteinase
Probab=20.81 E-value=1.9e+02 Score=28.21 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHG 191 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~ 191 (256)
+.+.-|+..|++.|-.|.+.+..+-..++.+...|...|++.
T Consensus 57 ~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~v 98 (477)
T PLN02494 57 IQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAV 98 (477)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceE
Confidence 557788899999999999999999888888888888888874
No 481
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=20.78 E-value=6.3e+02 Score=22.80 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=24.9
Q ss_pred hhhhHHHHHHH----HHHHHHHHhcccccCCCCCcEEEEecCCCccC
Q 025203 75 SSQYKADSQRA----AEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLS 117 (256)
Q Consensus 75 ~~~Y~~d~~~~----~~~a~~y~~~~~~~~~~~~~avvfDiDgTlld 117 (256)
.|+|.--.-|+ .++.+.++... .. ..+++.+|..|=||+=|
T Consensus 103 ~G~ylG~TVQviPHitdeIk~~I~~~-a~-~~~~Dv~iiEiGGTVGD 147 (276)
T PF06418_consen 103 RGDYLGKTVQVIPHITDEIKERIRRV-AK-KPEPDVVIIEIGGTVGD 147 (276)
T ss_dssp TTTTTTS---CCCHHHHHHHHHHHHH-HC-CCT-SEEEEEEESETTS
T ss_pred cCcccCceeeecchHHHHHHHHHHHh-cC-CCCCCEEEEecCCcccc
Confidence 45554444443 46667666655 22 23689999999999988
No 482
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.74 E-value=3.9e+02 Score=22.85 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHcC--CeE-EEEeCCCcccHHHHHHHHHhcCCC
Q 025203 148 ALEHTLNLFHEIKNRG--VKI-FLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 148 ~~pg~~ell~~L~~~G--~~i-~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
.++...++++++++.+ .++ ++++++ ....+.+...|+.
T Consensus 49 ~~~~~~~~i~~l~~~~~~~~~~~l~~~~-----~~~i~~a~~~g~~ 89 (265)
T cd03174 49 QMEDDWEVLRAIRKLVPNVKLQALVRNR-----EKGIERALEAGVD 89 (265)
T ss_pred cCCCHHHHHHHHHhccCCcEEEEEccCc-----hhhHHHHHhCCcC
Confidence 3356677777777776 666 444443 1235556666765
No 483
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=20.66 E-value=1.5e+02 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.2
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+..+..||-...=+.|++.|++.+++|..+... ..+.|+..||.
T Consensus 68 sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K---~~d~l~~~g~G 111 (277)
T PRK00994 68 SPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK---VKDAMEEQGLG 111 (277)
T ss_pred CCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc---hHHHHHhcCCc
Confidence 345666776666677899999999999998765 34888888886
No 484
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.65 E-value=1.3e+02 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-|.+++.+++++++|.+++.+|+.+...
T Consensus 144 T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 144 TPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4789999999999999999999987653
No 485
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=2.5e+02 Score=28.00 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
+--+-++++-+|..++++||-++..
T Consensus 31 ADv~aRy~Rl~G~~v~fvtGtDeHG 55 (558)
T COG0143 31 ADVYARYLRLRGYEVFFLTGTDEHG 55 (558)
T ss_pred HHHHHHHHHhcCCeEEEEeccCCCC
Confidence 3445567788899999999999854
No 486
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=20.54 E-value=9.4e+02 Score=24.74 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCCcEE
Q 025203 150 EHTLNLFHEIKNRGVKIFLVSSRRESL---RSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGYRIW 226 (256)
Q Consensus 150 pg~~ell~~L~~~G~~i~ivTnR~~~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~~i~ 226 (256)
....++++..++.|..++++|+-...+ -..+.+.|+..|.+. -.+++.+... +...+.+++.|.+-.
T Consensus 620 ~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~-v~vl~GG~~~---------~~~~~~l~~aGvD~~ 689 (714)
T PRK09426 620 QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGRED-IMVVVGGVIP---------PQDYDFLYEAGVAAI 689 (714)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCC-cEEEEeCCCC---------hhhHHHHHhCCCCEE
Confidence 445578888888888888888876433 345677788888542 2344443210 111245666788777
Q ss_pred EEEcCCcccc
Q 025203 227 GVVGDQWSSF 236 (256)
Q Consensus 227 ~~iGD~~sDl 236 (256)
+..|.+..++
T Consensus 690 i~~g~d~~~~ 699 (714)
T PRK09426 690 FGPGTVIADA 699 (714)
T ss_pred ECCCCCHHHH
Confidence 7777765443
No 487
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.49 E-value=1.8e+02 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred cCCcchHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 025203 144 SKAPALEHTLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYH 190 (256)
Q Consensus 144 ~~~~~~pg~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~ 190 (256)
+..+..||-...=+.|.+.|++.+++|..+... ..+.|+..||.
T Consensus 67 sPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k---~kd~l~~~g~G 110 (276)
T PF01993_consen 67 SPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK---AKDALEEEGFG 110 (276)
T ss_dssp -S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG---GHHHHHHTT-E
T ss_pred CCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh---hHHHHHhcCCc
Confidence 346677887777788899999999999988654 36788888885
No 488
>PHA00673 acetyltransferase domain containing protein
Probab=20.46 E-value=1.4e+02 Score=24.47 Aligned_cols=38 Identities=21% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHhcCCCCc
Q 025203 152 TLNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIHVGYHGW 192 (256)
Q Consensus 152 ~~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~~G~~~~ 192 (256)
+....++++++|..-.+||+-|... |++...++|+..-
T Consensus 107 l~~A~~~Ar~~Gc~~lyis~~p~~~---tv~fy~~~g~~~~ 144 (154)
T PHA00673 107 LRATEALARDLGATGLYVSGPTEGR---LVQLLPAAGYRET 144 (154)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCcc---chHHHHhCCchhh
Confidence 3455678999999999999999876 8999999998753
No 489
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=20.32 E-value=6.1e+02 Score=23.09 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEecCCCCCchhhhhhHHHHHHHHhcCC---cEEEEEcCC-cccc
Q 025203 163 GVKIFLVSSRRES--LRSYTVDNLIHVGYHGWASLELRGLEDEYKKVQQYKAQVRKRLVKEGY---RIWGVVGDQ-WSSF 236 (256)
Q Consensus 163 G~~i~ivTnR~~~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~l~~~g~---~i~~~iGD~-~sDl 236 (256)
+-+++++|+..-. ..+...+.|+..|+. +...++. ..+..|+ ...-....+.+.+.+. +.++.||-. ..|+
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~-~~~~~~~-~~e~~~~-~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ 100 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFE-VEVIVIP-AGEASKS-LETLEKLYDALLEAGLDRKSLIIALGGGVVGDL 100 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCc-eEEEEeC-CCCCcCC-HHHHHHHHHHHHHcCCCCCCeEEEECChHHHhH
Confidence 4688999986532 234456677777775 3323332 2222222 2222344455666666 677788876 4787
Q ss_pred CCC-----CCCCcEEEecC
Q 025203 237 EGL-----PKPKRTFKLPN 250 (256)
Q Consensus 237 ~ga-----~~g~r~fklPn 250 (256)
.+. ..|.+.+.+|-
T Consensus 101 ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 101 AGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHHhcCCCeEEcch
Confidence 654 23667777764
No 490
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=20.20 E-value=73 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcEEEEecCCCccCCh
Q 025203 82 SQRAAEEVKLYLSGCCSLAGDGKDAWIFDVDDTLLSTI 119 (256)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~avvfDiDgTlldn~ 119 (256)
-+++-++|+..+... .- ++.--.||+|.|||++.+.
T Consensus 37 ~eea~~~a~~~l~~~-r~-~~~gY~fi~d~~g~~l~hp 72 (95)
T PF08269_consen 37 EEEAQQQAREALRAL-RY-GGDGYFFIYDMDGVVLAHP 72 (95)
T ss_dssp --TTHHHHHHHHHH---S-BTTB--EEE-TTSBEEEES
T ss_pred HHHHHHHHHHHHhcc-cc-CCCCeEEEEeCCCeEEEcC
Confidence 344556677777666 44 3334799999999988753
No 491
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.15 E-value=1.4e+02 Score=26.96 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeCCCccc
Q 025203 149 LEHTLNLFHEIKNRGVKIFLVSSRRESL 176 (256)
Q Consensus 149 ~pg~~ell~~L~~~G~~i~ivTnR~~~~ 176 (256)
-|.+.+.++.++++|.+++.+|+.+...
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 3778999999999999999999987643
No 492
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.09 E-value=82 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHH
Q 025203 136 SWEAWMKESKAPALEHTLNLFHEIKN 161 (256)
Q Consensus 136 ~~~~wv~~~~~~~~pg~~ell~~L~~ 161 (256)
.|++|+.-+.-|.-..+.+.++.+-.
T Consensus 19 dWd~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 19 DWDKWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred chHHheeeCCeeCCHHHHHHHHHHHh
Confidence 39999988888888888888877643
No 493
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.05 E-value=1e+02 Score=19.73 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHh
Q 025203 153 LNLFHEIKNRGVKIFLVSSRRESLRSYTVDNLIH 186 (256)
Q Consensus 153 ~ell~~L~~~G~~i~ivTnR~~~~r~~T~~~L~~ 186 (256)
.++..+|++.|++..=||... |...++.|.+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT---R~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT---RKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch---HHHHHHHHHH
Confidence 466778888888888777654 4445666654
No 494
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=20.04 E-value=1.1e+02 Score=20.78 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=15.9
Q ss_pred CchhhHHHHHHHHHHHhhhccc
Q 025203 1 MARNSVLILAFTSLCIASALAD 22 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (256)
|.+.++|..++++.++.++.|.
T Consensus 1 MR~~lLf~aiLalsla~s~gav 22 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAV 22 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhh
Confidence 6677777777777777777663
Done!