BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025206
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/255 (61%), Positives = 180/255 (70%), Gaps = 9/255 (3%)
Query: 2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
SS LR AK GA G+ KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27 ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77
Query: 62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
+ N PGV AD+ H++T + V G++G QL AL D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78 VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
AGIVK LC IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197
Query: 182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
TF HAG+TILPL SQ P ++ E+I LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEV 257
Query: 242 VEAKAGKGSATLSMA 256
VEAKAG GSATLSMA
Sbjct: 258 VEAKAGAGSATLSMA 272
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 300 bits (767), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 171/230 (74%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
P KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
QL AL D++I+PAGVPRKPGMTRDDLF INAGIVK LC IAK CP AIVN+ISN
Sbjct: 67 QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF HAG
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 186
Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
+TILPL SQ P ++ E+I LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 187 VTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMA 236
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 283 bits (725), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/227 (62%), Positives = 168/227 (74%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
L L+ DVV+IPAGVPRKPGMTRDDLFN NA IV L +A A++CP+A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI 209
ST+PI AEVFKK G YN K+FGVTTLD+VRA F HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
+PL SQ TPK + + + LT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 283 bits (723), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 141/229 (61%), Positives = 170/229 (74%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+ KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G
Sbjct: 28 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGP 87
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
+QL L+ DVV+IPAGVPRKPGMTRDDLFN NA IV L +A A++CP A++ +I+NP
Sbjct: 88 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANP 147
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
VNST+PI AEVFKK G YN K+FGVTTLD+VRA TF HAG
Sbjct: 148 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 207
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
TI+PL SQ TPK + + + ALT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 208 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMA 256
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAV+GAAGGIGQ LALL+K P S LALYDIA TPGVAAD+ HI T + GY G
Sbjct: 5 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
D ALE +DVV+I AGV RKPG R DLFN+NAGIVK L IA CPNA + +I+NP
Sbjct: 65 DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF H+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
TILPL SQ +DE+I ALTKR Q+ GTEVVEAKAG GSATLS
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 159/228 (69%), Gaps = 4/228 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
D ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 62 DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
TILPL SQ P + ++++ LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 159/228 (69%), Gaps = 4/228 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
D ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 62 DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
TILPL SQ P + ++++ LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 158/228 (69%), Gaps = 4/228 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
D ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 62 DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
TILPL SQ P + ++++ LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
++ +KV+V+GA G G A L+ L + + L DI T G A D+ S
Sbjct: 5 TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81 VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
V G+ N D A DSDVV+I AG+ RKPGM+RDDL N+ I+K + IAK+
Sbjct: 60 VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
PNAI+ +++NPV++ + VFK+AG E+ + LD R +TF
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKD 174
Query: 196 XXXXXXXXHAGITILPL----FSQATPKANLA-DEDIKALTKRTQDGGTEVVEAKAGKGS 250
H G ++PL ++ P L E ++A+ +RT+ GG E+V G GS
Sbjct: 175 ITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGS 232
Query: 251 A 251
A
Sbjct: 233 A 233
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD------VGHINTRSEV 81
K+ V+GA G +G A + L L L D+ G A D VG +T+ V
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G ND A +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++ I ++ N I+
Sbjct: 59 TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
++SNP++ +A ++K+G E+ + LD R ++F
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
H G ++P+ T P A+L + E I L +RT+ GG E+V +GSA S
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYS 227
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 28/232 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
+K++++GA G IG +ALL+ L + ++DI G A D+ H I + +++
Sbjct: 15 KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G + + L++SDVVII AGVPRKP MTR DL +NA IV + + KYCPNA V
Sbjct: 73 G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXX 201
I+NP+++ V FK+ K+ G++ LD R +
Sbjct: 129 CITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV 184
Query: 202 XXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVE 243
H G ++PL S T + + I + K+T GG E+VE
Sbjct: 185 GGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVE 235
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
K+ V+GA G +G A + L L L D+ G A D VG +T+ V
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G ND A +SD+VII AG+PRKPGMTR+DL NAGIVK++ I K+ N I+
Sbjct: 59 TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
++SNP++ +A + ++G E+ + LD R ++F
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
H G ++P+ T P ++L E I L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
K+ V+GA G +G A + L L L D+ G D VG +T+ +
Sbjct: 2 KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G ND A DSD+VII AG+PRKPGMTR+DL NAGIVK++ I K+ N I+
Sbjct: 59 TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
++SNP++ +A + ++G E+ + LD R ++F
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
H G ++P+ T P ++L E I L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 99/227 (43%), Gaps = 19/227 (8%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
RK L AG IG LA L + L + L+DIA G A D+ V +
Sbjct: 5 RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
+ LE+SDVVI+ AGVPRKPG +RDDL IN + + + I CPNA V I+N
Sbjct: 64 GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXXXHA 205
P++ I +K + K+ G LD R +TF H
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH- 178
Query: 206 GITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVV 242
G T +PL Q + L E + A+ RT+ GG E+V
Sbjct: 179 GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV 225
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 28/235 (11%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
S+ K+A++G+ G IG LA L L L + L+DIA TP G D+ S V
Sbjct: 4 SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83 GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
G+ ND A+E +DVVI+ AGVPRKPGM+RDDL IN +++ + + I KY P
Sbjct: 59 GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
A V I+NP+++ V A + F + + GV LD R + F
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVT 173
Query: 198 XXXXXXHAGITILPLFSQAT----PKANL------ADEDIKALTKRTQDGGTEVV 242
H G +++PL +T P +L + + + + +RT+DGG E+V
Sbjct: 174 VFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV 227
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
+SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++ M++NP+++ +A
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
AEV +G E+ + LD R +TF H + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
+ P + +A + + + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
KV ++GA+G +G ALL+ P + L L + I G+ D+ TRS+
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
Y+ +D+ + +++SDVVII +GVPRK GM+R DL NA IV IA+ C I +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183
I+NPV+ + A V K + ++FG+ T LD +R K
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKV 157
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
+SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++ M++NP+++ +A
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
AEV +G E+ + LD R +TF H + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
+ P + +A + + + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
+SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++ M++NP+++ +A
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
AEV +G E+ + LD R +TF H + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
+ P + +A + + + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
+SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++ M++NP+++ +A
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
AEV +G E+ + LD R +TF H + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 --QATPKAN-LADEDIKALTKRTQDGGTEVV 242
P + +A + + + +RT+ GG E+V
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
K+ ++G G +G A + + + L D+ G A D+ H + A
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
D L+ SDVVI+ AGVP+KPG TR L NA ++K++ ++KY P++IV +++NP
Sbjct: 61 DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
V+ + F K + +K+FG T LD R +T
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTL 152
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 24/238 (10%)
Query: 24 ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRS 79
E V R KVA++GA G +G A M L + L L D+ G A D+ H +
Sbjct: 2 EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80 EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
+++ Y G+ ++D DV+++ AG RKPG TR DL N I K++ I KY +
Sbjct: 61 QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXX 199
++ ++SNPV+ I + K +G K + T LD +R +
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGY 174
Query: 200 XXXXHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
H G + LPL+S PK N +ED K + + + G +++ K
Sbjct: 175 IIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK 231
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 37 AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
AG +G A LN V +AL DIA G A D+ H I+ ++ G G D
Sbjct: 8 AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+ I + P + + +++NP++
Sbjct: 65 -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAK 182
I ++K++G NE +FG+ LD R K
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLK 152
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
KV V+GA G +G +A + + + + DI + G A D + S + G+
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85 -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
G + G EDSDV II AG+PR PGM+RDDL N IV + + P++ + +
Sbjct: 58 VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
++NP++ +A E A + ++ G+ LD R ++F
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 XHAGITILPLFSQAT----PKANLADE-DIKALTKRTQDGGTEVVE 243
H G T++PL T P L D+ I+ + +RT+ G E+V+
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
+ + K+ ++GAAG IG +A + L L LYD GVA ++ H G
Sbjct: 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84 YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+ G + +AL D+ ++ G PRK GMTR+DL NA I L I YCP+
Sbjct: 59 FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 A-IVNMISNPVNST 151
V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
RK+AV+G+ G IG +A ++ + L + + L+DIA G A D+ H + S+V
Sbjct: 5 RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND + SDVVII A +P +P R +L NA I+ + + KYCPNA V
Sbjct: 63 GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
I+NP++ + F+K K+ G+ LD R +TF
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH-INTRSEVAGYM 85
RK+AV+G+ G IG +A ++ + L + + L+DIA G A D+ H + + +
Sbjct: 5 RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
G D + SDVVII A +P +P R +L NA I+ + + KYCPNA V I+
Sbjct: 63 GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
NP++ + F+K K+ G+ LD R +TF
Sbjct: 122 NPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
+ +LGA G +G A+++ + L IA TPG A D+ H V +
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
+ + SD+V++ AG+ RKPGMTR+ L NA + DL I Y +AIV + +N
Sbjct: 58 GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
PV++ + ++KK G E+ + LD R +
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYY 152
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 26/241 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+K+A++G+ G IG + L L L + + L+D+ G A D + ++ +
Sbjct: 9 KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
+ + + SDVVII AG+ + PG +R+DL NA I++++ + KYCP A V
Sbjct: 67 SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
+++NP++ V + F +A + + G+ LD R + F
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
H G +LPL + K + + + + +RT+ G E+V G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 A 251
A
Sbjct: 241 A 241
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 26/241 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+K+A++G+ G IG + L L L + + L+D+ G A D + ++ +
Sbjct: 9 KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
+ + + SDVVII AG+ + PG +R+DL NA I++++ + KYCP A V
Sbjct: 67 SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
+++NP++ V + F +A + + G+ LD R + F
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
H G +LPL + K + + + + +RT+ G E+V G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 A 251
A
Sbjct: 241 A 241
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 10/196 (5%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--DVGHINTRSEVA 82
+V K+AV+GA G +G LA + + L DIA A D+ H ++
Sbjct: 4 TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G+D + D+D+V+I AG +KPG +R +L I+K + + K PNAI
Sbjct: 63 SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
+I+NPV+ IA V +K E ++FG T LD R +
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 202 XXHAGITILPLFSQAT 217
H G + +PL+ AT
Sbjct: 178 GEH-GDSEVPLWESAT 192
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
+KVA++G+ G IG + L L L + + LYD+ G A D+ H+ + +
Sbjct: 10 KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 68 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
+ +++NP++ V + E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
+KVA++G+ G IG + L L L + + LYD+ G A D+ H+ + +
Sbjct: 8 KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 66 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
+ +++NP++ V + E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
+KVA++G+ G IG + L L L + + LYD+ G A D+ H+ + +
Sbjct: 10 KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 68 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
+ +++NP++ V + E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
P K+ ++G+ G IG +A L+ L + ++DI N P G A D H N +
Sbjct: 3 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
+ L+D+DVVI+ AG + PG RDDL +N I+ ++ I CPNA
Sbjct: 61 VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
+ +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
H +L PL + + D+++ A+ RT + E+V A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIVNLHA 233
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N +
Sbjct: 3 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
+ L SDVVI+ AG + PG RDDL +N I+ ++ I K CPNA
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
+ +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
H +L PL K ++D +++A+ RT + E+V A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA 233
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64 NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
+T G AAD H NTR GY D G SDVV+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
NA I++D+ S++ ++ + I SNPV+
Sbjct: 94 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64 NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
+T G AAD H NTR GY D G SDVV+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
NA I++D+ S++ ++ + I SNPV+
Sbjct: 94 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64 NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
+T G AAD H NTR GY D G SDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
NA I++D+ S++ ++ + I SNPV+
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64 NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
+T G AAD H NTR GY D G SDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
NA I++D+ S++ ++ + I SNPV+
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64 NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
+T G AAD H NTR GY D G SDVV+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
NA I++D+ S++ ++ + I SNPV+
Sbjct: 93 GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N + +
Sbjct: 3 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
V+G D L A DVVI+ AG + PG RDDL +N I+ ++ I K
Sbjct: 61 VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
CPNA + +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
H +L PL K ++D +++A+ RT + E+V
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KA 246
A
Sbjct: 232 HA 233
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N + +
Sbjct: 2 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
V+G D L A DVVI+ AG + PG RDDL +N I+ ++ I K
Sbjct: 60 VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
CPNA + +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
H +L PL K ++D +++A+ RT + E+V
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KA 246
A
Sbjct: 231 HA 232
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N + +
Sbjct: 2 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
V+G D L A DVVI+ AG + PG RDDL +N I+ ++ I K
Sbjct: 60 VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
CPNA + +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
H +L PL K ++D +++A+ RT + E+V
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KA 246
A
Sbjct: 231 HA 232
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N + +
Sbjct: 3 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
V+G D L A DVVI+ AG + PG RDDL +N I+ ++ I K
Sbjct: 61 VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
CPNA + +++NPV+ + ++ + + K+ G+ LD R K +
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYY 162
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 31/237 (13%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
P K+ ++G+ G IG +A L+ L + ++D+ N P G A D H N + +
Sbjct: 2 PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
V G D L A DVVI+ AG + PG RDDL +N I+ ++ I
Sbjct: 60 VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
CPNA + +++NPV+ V + +F+ +G K + LD R K +
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRD 172
Query: 196 XXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
H +L PL + + DE+++ + RT + E+V
Sbjct: 173 VNALIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDEEVEGIFDRTVNTALEIV 228
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
++PD K+ V+G G +G A+ + L LAL D+ G D+ H + +
Sbjct: 18 TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
+ N +S +V++ AGV ++ G +R +L N + K + I KY PN I+
Sbjct: 77 KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEV 158
++SNPV+ +A ++
Sbjct: 136 VVSNPVDILTYVAWKL 151
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 25/238 (10%)
Query: 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
P K+ ++G+ G IG +A L+ L + L+DI N P G A D H N +
Sbjct: 3 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
+ L SDVVI+ AG + PG R DL +N I+ ++ I K CPNA
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
+ +++NPV+ V ++ + + K+ G+ LD R K +
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
H +L PL K ++D +++A+ RT + E+V A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA 233
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
+VAV GAAG IG L +L K P++ L L +I GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+AG D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
+ V ++ NP N+ IA +K A N + +T LD RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
+VAV GAAG IG L +L K P++ L L +I GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+AG D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
+ V ++ NP N+ IA +K A N + +T LD RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
+VAV GAAG IG L +L K P++ L L +I GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+AG D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
+ V ++ NP N+ IA +K A N + +T LD RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
+VAV GAAG IG L +L K P++ +L + + A G + +
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81 ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
+AG D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
+ V ++ NP N+ IA +K A N + +T LD RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
L D+ VVI+ AG +KPG +R DL NA I ++L I + P+A++ + SNPV+
Sbjct: 65 LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEV 158
+A ++
Sbjct: 125 LATQL 129
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
E P K+ V+G G +G A+ + + L LAL D+ G D+ H +
Sbjct: 14 EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
T V+G N +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 73 TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
PN + ++SNPV+ +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
E P K+ V+G G +G A+ + + L LAL D+ G D+ H +
Sbjct: 14 EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
T V+G N +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 73 TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
PN + ++SNPV+ +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
E VP K+ V+G G +G A+ + + L +AL D+ G D+ H +
Sbjct: 15 EEHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLR 73
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
T V+G N +S +V+I AG ++ G +R +L N I K + I KY
Sbjct: 74 TPKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYS 128
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
PN + ++SNPV+ +A ++
Sbjct: 129 PNCKLLVVSNPVDILTYVAWKI 150
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 27/229 (11%)
Query: 45 ALLMKLNPLVSRLALYDIAN--TPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
A+ + L L LA+ D+ G D+ H + ++++ G D+ +S VV
Sbjct: 36 AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
++ AG ++ G +R +L N I K + I KY PN I+ ++SNPV+ +A +K
Sbjct: 92 VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH-------------AGI 207
+G + + T LD R + H AG+
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEHGDSSVPVWSGVNVAGV 208
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
++ L Q + + E+ KA+ K DG EV++ K G S + M+
Sbjct: 209 SLQGLNPQMGTEGD--GENWKAIHKEVVDGAYEVIKLK-GYTSWAIGMS 254
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
+VP+ K+ V+G G +G A+ + L LAL D+ G D+ H + T
Sbjct: 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
VA D+ +S +V++ AGV ++ G +R +L N + K + I KY P+
Sbjct: 76 KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
+VP+ K+ V+G G +G A+ + L LAL D+ G D+ H + T
Sbjct: 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
VA D+ +S +V++ AGV ++ G +R +L N + K + I KY P+
Sbjct: 76 KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
D + +L G +G A M L + + + DI T G A D+ + + ++
Sbjct: 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
+D +D+D+V+I AG P+KPG TR DL N N I+K + I N I
Sbjct: 68 SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
+ +NPV+ + +K +G + + T+LD R +
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
H G T P++S A E +KA + +D ++ E
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 219
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KV ++G G +G A + +V L + D+ +T V DV + + + +
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90 LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
G+ D+D+V+I AG +KPG TR DL + N I K + + + I + +NP
Sbjct: 66 AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
V+ +A +K +G E+ + T LD R + H G
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
T LP++S AN+A + +K L ++ +G ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H +
Sbjct: 14 EEHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLR 72
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
T V+G D A +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 73 TPKIVSG---KDYSVTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
P+ + ++SNPV+ +A ++
Sbjct: 128 PHCKLLVVSNPVDILTYVAWKI 149
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KV ++G G +G A + +V L + D+ +T V DV + + + +
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90 LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
G+ D+D+V+I AG +KPG TR DL + N I K + + + I + +NP
Sbjct: 66 AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
V+ +A +K +G E+ + T LD R + H G
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
T LP++S AN+A + +K L ++ +G ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
D + +L G +G A M L + + + DI T G A D+ + + ++
Sbjct: 7 DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
+D +D+D+V+I AG P++PG TR DL N N I+K + I N I
Sbjct: 67 SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
+ +NPV+ + +K +G + + T+LD R +
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 178
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
H G T P++S A E +KA + +D ++ E
Sbjct: 179 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 218
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 14/221 (6%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
D + +L G +G A M L + + + DI T G A D+ + ++
Sbjct: 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY 67
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
+D +D+D+V+I AG P+KPG TR DL N N I+K + I N I
Sbjct: 68 SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
+ +NPV+ + +K +G + + T+LD R +
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
H G T P++S A E +KA + +D ++ E
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 219
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H + +
Sbjct: 14 EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 72
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
+ + +S +VII AG ++ G +R +L N I K + + KY P
Sbjct: 73 TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 141 VNMISNPVNSTVPIAAEV 158
+ ++SNPV+ +A ++
Sbjct: 132 LLIVSNPVDILTYVAWKI 149
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H + +
Sbjct: 15 EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 73
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
+ + +S +VII AG ++ G +R +L N I K + + KY P
Sbjct: 74 TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 141 VNMISNPVNSTVPIAAEV 158
+ ++SNPV+ +A ++
Sbjct: 133 LLIVSNPVDILTYVAWKI 150
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
+V V GAAG I L ++ K P++ L L DI TP + G + + A
Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83 -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
+ D+ A +D DV I+ +PR+ GM R DL N I K +A+ KY
Sbjct: 62 LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
++ V ++ NP N+ A+ K A + ++ +T LD RAK
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 164
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30 KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
+V V GAAG I L ++ K P++ L L DI TP + G + + A
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83 -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
+ D+ A +D DV I+ +PR+ GM R DL N I K +A+ KY
Sbjct: 61 LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
++ V ++ NP N+ A+ K A + ++ +T LD RAK
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 163
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 26/224 (11%)
Query: 50 LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
L L LAL D+ G A D+ H + T VA D+ +S VV++
Sbjct: 41 LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
AG ++ G +R +L N I K + I KY PN I+ ++SNPV+ +A +K +G
Sbjct: 96 AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH--------AGITILPLFSQ 215
+ + T LD R + H +G+ + +F Q
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQ 212
Query: 216 ATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
D ED K++ K D EV++ K G S + M+
Sbjct: 213 GLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK-GYTSWAIGMS 255
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
S+P+ + VL G +G A M + + D+ T G A D+ +
Sbjct: 1 SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
+ +D+D+V+I AG P+KPG +R DL N N I+ + + + I
Sbjct: 61 KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
+ +NPV+ + +K +G E+ + T+LD R +
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLR 155
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
D+D+V+I AG +KPG TR DL + N I + + ++ + + +NPV+ +
Sbjct: 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
+K +G +E+ + T LD R + H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
A K A +D++ + +D +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
D+D+V+I AG +KPG TR DL + N I + + ++ + + +NPV+ +
Sbjct: 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
+K +G +E+ + T LD R + H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
A K A +D++ + +D +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
KVAV GAAG IG L L+ L+ L L DI P + A G + E +
Sbjct: 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85 MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
D++ A + + I+ PRK GM R DL +NA I K+ AIA
Sbjct: 83 PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTF 184
+ V ++ NP N+ I + K A G N + + +T LD RA +
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSL 187
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 19/229 (8%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVA++GA G +G A + + L + D+ N DV +N A
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90 LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
G + +D+D+V I AG +KPG TR +L N I K + S + + I + +NP
Sbjct: 65 YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
V+ + +K +G E+ + TTLD R + H G
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GD 180
Query: 208 TILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAK 245
T LP++S A P + L + E++ + ++ ++E K
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 19/229 (8%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVA++GA G +G A + + L + D+ N DV +N A
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90 LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
G + +D+D+V I AG +KPG TR +L N I K + S + + I + +NP
Sbjct: 65 YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
V+ + +K +G E+ + TTLD R + H G
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GD 180
Query: 208 TILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAK 245
T LP++S A P + L + E++ + ++ ++E K
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
K G S E K+ V+G G +G A+ + + L +AL D+ G D
Sbjct: 7 KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72 VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
+ H ++T V+G + G S +V+I AG ++ G +R +L N I K
Sbjct: 66 LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
+ I K+ P+ I+ ++SNPV+ +A +K +G + + LD R +
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 177
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
H +G+ + + N +D K L K D
Sbjct: 178 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 237
Query: 240 EVVEAK 245
EV++ K
Sbjct: 238 EVIKLK 243
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
K G S E K+ V+G G +G A+ + + L +AL D+ G D
Sbjct: 6 KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72 VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
+ H ++T V+G + G S +V+I AG ++ G +R +L N I K
Sbjct: 65 LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
+ I K+ P+ I+ ++SNPV+ +A +K +G + + LD R +
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 176
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
H +G+ + + N +D K L K D
Sbjct: 177 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 236
Query: 240 EVVEAK 245
EV++ K
Sbjct: 237 EVIKLK 242
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
+ +D++ ++ PR PGM R DL +IN I + A+ A PN V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
I K A K +T LD RAK
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAKC 203
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 20 GYSSESVPDRKVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDI----ANTPGV 68
G S + P ++VAV GAAG I L LL K P++ L L D+ A GV
Sbjct: 1 GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDLPQAQAAVKGV 58
Query: 69 AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL 128
++ +AG + D A +D+DV ++ PR GM R DL + NA I
Sbjct: 59 VMELDDC-AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQ 117
Query: 129 CSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
+A+ + + V ++ NP N+ IA K A +K + LD RA
Sbjct: 118 GAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRA 168
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
+VAV GAAG I L +L K P++ L L +I N A G + +
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81 ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
+AG + A +D+DV ++ PR PGM R DL NA I AI A
Sbjct: 65 FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
N V ++ NP N+ IA K A + K + LD RA
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRA 166
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
LE + V++ AGV ++PG TR L + NA + + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
+A ++ +G + + T LD R +
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
LE + V++ AGV ++PG TR L + NA + + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
+A ++ +G + + T LD R +
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
LE + V++ AGV ++PG TR L + NA + + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
+A ++ +G + + T LD R +
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
LE + V++ AGV ++PG TR L + NA + + + + P A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
+A
Sbjct: 125 VA 126
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
+ ED D ++ PR PGM R L +IN I D A+ A N V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
I K A K +T LD RAK
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAK 192
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGH----INTRSEVA 82
K+ V+G G +G A+ + L L LAL D A+T G A D+ H ++T V
Sbjct: 21 KITVVGV-GDVGMACAISILLKGLADELALVD-ADTDKLRGEALDLQHGSLFLSTPKIVF 78
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G N +S +VII AG G TR DL N I+K + + + P+ +
Sbjct: 79 GKDYN-----VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKII 133
Query: 143 MISNPVN 149
+++NPV+
Sbjct: 134 VVTNPVD 140
>pdb|3NBZ|B Chain B, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|E Chain E, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|B Chain B, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|E Chain E, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 362
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 52 PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE 95
PLV L Y +++ GVA G + T+ + AG+ QL Q +E
Sbjct: 274 PLVGWLRPYMVSDVLGVAVPAGPLTTKPDYAGH----QLQQIME 313
>pdb|3GB8|B Chain B, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 329
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 52 PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE 95
PLV L Y +++ GVA G + T+ + AG+ QL Q +E
Sbjct: 273 PLVGWLRPYMVSDVLGVAVPAGPLTTKPDYAGH----QLQQIME 312
>pdb|3GJX|B Chain B, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|E Chain E, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 365
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 52 PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE 95
PLV L Y +++ GVA G + T+ + AG+ QL Q +E
Sbjct: 277 PLVGWLRPYMVSDVLGVAVPAGPLTTKPDYAGH----QLQQIME 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,468,525
Number of Sequences: 62578
Number of extensions: 236265
Number of successful extensions: 779
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 100
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)