Query 025206
Match_columns 256
No_of_seqs 209 out of 1565
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 9.1E-57 2E-61 403.6 22.7 228 29-256 1-228 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.7E-55 3.7E-60 395.9 21.1 227 30-256 1-227 (312)
3 PLN00106 malate dehydrogenase 100.0 5.1E-52 1.1E-56 374.8 24.3 229 28-256 18-246 (323)
4 COG0039 Mdh Malate/lactate deh 100.0 1.7E-52 3.7E-57 373.0 20.8 218 29-256 1-231 (313)
5 KOG1494 NAD-dependent malate d 100.0 1.1E-51 2.4E-56 355.5 17.7 251 5-256 6-257 (345)
6 PTZ00325 malate dehydrogenase; 100.0 1.8E-50 4E-55 364.4 22.4 229 26-256 6-234 (321)
7 KOG1495 Lactate dehydrogenase 100.0 2.3E-50 5E-55 345.9 20.7 212 27-246 19-246 (332)
8 cd05290 LDH_3 A subgroup of L- 100.0 2.4E-50 5.2E-55 362.3 21.3 208 30-246 1-226 (307)
9 PRK05086 malate dehydrogenase; 100.0 3E-49 6.5E-54 356.4 22.3 226 29-256 1-228 (312)
10 TIGR01759 MalateDH-SF1 malate 100.0 5.9E-49 1.3E-53 355.3 20.6 215 27-248 2-236 (323)
11 cd05293 LDH_1 A subgroup of L- 100.0 9.6E-49 2.1E-53 352.8 21.3 211 28-246 3-229 (312)
12 PRK05442 malate dehydrogenase; 100.0 2.6E-48 5.7E-53 351.4 20.1 215 26-247 2-236 (326)
13 PLN02602 lactate dehydrogenase 100.0 4.7E-48 1E-52 352.4 21.7 210 29-246 38-263 (350)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 1.4E-47 3E-52 343.5 18.3 205 33-246 1-221 (299)
15 cd00704 MDH Malate dehydrogena 100.0 2.6E-47 5.6E-52 344.9 17.8 212 30-248 2-236 (323)
16 PLN00112 malate dehydrogenase 100.0 4.8E-47 1.1E-51 353.1 20.1 215 26-248 98-333 (444)
17 PRK00066 ldh L-lactate dehydro 100.0 1E-46 2.3E-51 340.2 21.4 211 27-246 5-230 (315)
18 TIGR01757 Malate-DH_plant mala 100.0 8E-47 1.7E-51 346.9 19.9 217 24-248 40-277 (387)
19 cd01338 MDH_choloroplast_like 100.0 1.2E-46 2.6E-51 340.4 20.0 214 27-247 1-234 (322)
20 cd05291 HicDH_like L-2-hydroxy 100.0 7.5E-46 1.6E-50 333.8 20.4 209 29-246 1-224 (306)
21 PTZ00117 malate dehydrogenase; 100.0 7.3E-45 1.6E-49 328.9 23.3 221 26-256 3-238 (319)
22 TIGR01763 MalateDH_bact malate 100.0 3.6E-45 7.7E-50 329.0 21.0 215 29-255 2-228 (305)
23 cd00300 LDH_like L-lactate deh 100.0 3.5E-45 7.5E-50 328.6 20.2 208 31-246 1-219 (300)
24 PTZ00082 L-lactate dehydrogena 100.0 1.5E-44 3.2E-49 326.9 23.7 222 25-256 3-244 (321)
25 TIGR01758 MDH_euk_cyt malate d 100.0 2.9E-45 6.2E-50 331.7 18.2 218 30-255 1-241 (324)
26 cd01336 MDH_cytoplasmic_cytoso 100.0 2.6E-44 5.6E-49 325.8 17.5 218 27-254 1-243 (325)
27 cd05292 LDH_2 A subgroup of L- 100.0 1.4E-43 3.1E-48 319.2 20.9 209 29-246 1-225 (308)
28 cd05294 LDH-like_MDH_nadp A la 100.0 1.8E-42 3.9E-47 312.0 22.7 213 29-248 1-227 (309)
29 PRK06223 malate dehydrogenase; 100.0 1.6E-42 3.5E-47 312.0 20.6 217 28-254 2-228 (307)
30 cd01339 LDH-like_MDH L-lactate 100.0 8.2E-42 1.8E-46 306.7 20.1 215 31-255 1-225 (300)
31 cd05295 MDH_like Malate dehydr 100.0 8E-42 1.7E-46 318.1 17.5 220 24-256 119-371 (452)
32 PLN00135 malate dehydrogenase 100.0 1.8E-40 3.9E-45 298.0 17.4 191 56-256 15-225 (309)
33 cd00650 LDH_MDH_like NAD-depen 100.0 1.2E-38 2.5E-43 281.3 20.0 181 31-217 1-186 (263)
34 TIGR01756 LDH_protist lactate 100.0 1.1E-38 2.4E-43 287.0 17.9 185 56-247 17-219 (313)
35 PF00056 Ldh_1_N: lactate/mala 100.0 2.7E-33 5.9E-38 225.3 13.5 139 29-172 1-141 (141)
36 KOG1496 Malate dehydrogenase [ 100.0 4.4E-33 9.5E-38 236.1 12.3 224 26-256 2-247 (332)
37 PRK15076 alpha-galactosidase; 99.9 1.3E-26 2.9E-31 217.1 15.0 174 28-219 1-209 (431)
38 cd05197 GH4_glycoside_hydrolas 99.9 9.4E-26 2E-30 210.9 17.3 175 29-219 1-206 (425)
39 cd05296 GH4_P_beta_glucosidase 99.9 3.7E-25 8E-30 206.6 17.0 175 29-219 1-206 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 4.1E-23 8.9E-28 193.6 17.2 176 29-219 1-207 (423)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 3.9E-22 8.5E-27 186.9 17.1 190 29-236 1-221 (437)
42 COG1486 CelF Alpha-galactosida 99.9 7.9E-21 1.7E-25 175.6 15.1 191 27-236 2-224 (442)
43 PF02056 Glyco_hydro_4: Family 99.8 3.3E-19 7.1E-24 148.5 14.1 152 30-191 1-183 (183)
44 PF02866 Ldh_1_C: lactate/mala 99.7 6E-18 1.3E-22 140.6 6.1 80 174-256 1-91 (174)
45 COG1250 FadB 3-hydroxyacyl-CoA 99.1 5.5E-10 1.2E-14 100.3 12.6 162 28-217 3-201 (307)
46 PF02737 3HCDH_N: 3-hydroxyacy 99.1 1.1E-10 2.5E-15 97.5 7.7 117 30-174 1-136 (180)
47 COG1004 Ugd Predicted UDP-gluc 99.0 1.1E-08 2.5E-13 93.7 16.2 113 29-154 1-130 (414)
48 PRK07066 3-hydroxybutyryl-CoA 99.0 4.2E-09 9E-14 95.6 12.2 120 28-173 7-140 (321)
49 TIGR02437 FadB fatty oxidation 98.9 1.4E-08 3.1E-13 101.2 12.7 119 27-173 312-449 (714)
50 PRK11154 fadJ multifunctional 98.9 1.9E-08 4.1E-13 100.3 13.1 119 27-173 308-446 (708)
51 PRK07819 3-hydroxybutyryl-CoA 98.9 1.8E-08 3.9E-13 90.2 11.7 118 28-173 5-142 (286)
52 PRK11730 fadB multifunctional 98.9 1.8E-08 3.8E-13 100.7 12.8 118 28-173 313-449 (715)
53 TIGR02441 fa_ox_alpha_mit fatt 98.9 1.8E-08 4E-13 100.7 12.8 119 27-173 334-471 (737)
54 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 3.7E-09 8E-14 88.8 6.3 121 29-163 1-139 (185)
55 PRK08293 3-hydroxybutyryl-CoA 98.9 2E-08 4.4E-13 89.7 11.4 119 28-173 3-141 (287)
56 TIGR02440 FadJ fatty oxidation 98.8 3.2E-08 6.9E-13 98.6 13.0 119 27-173 303-441 (699)
57 KOG2304 3-hydroxyacyl-CoA dehy 98.8 4.7E-09 1E-13 89.4 5.1 121 27-173 10-153 (298)
58 PLN02166 dTDP-glucose 4,6-dehy 98.8 9.7E-08 2.1E-12 90.3 13.9 123 17-145 109-233 (436)
59 PRK05808 3-hydroxybutyryl-CoA 98.7 1.9E-07 4E-12 83.2 12.4 118 28-173 3-139 (282)
60 TIGR01915 npdG NADPH-dependent 98.7 6E-07 1.3E-11 77.1 14.3 147 29-204 1-165 (219)
61 PLN02353 probable UDP-glucose 98.7 3.9E-07 8.4E-12 86.9 14.0 114 28-152 1-135 (473)
62 PRK06035 3-hydroxyacyl-CoA deh 98.7 1.9E-07 4E-12 83.6 11.2 117 29-173 4-142 (291)
63 PRK15181 Vi polysaccharide bio 98.6 1.4E-07 3E-12 86.3 9.6 169 26-204 13-199 (348)
64 PF01073 3Beta_HSD: 3-beta hyd 98.6 1.6E-07 3.4E-12 83.8 9.6 107 32-138 1-109 (280)
65 PRK07530 3-hydroxybutyryl-CoA 98.6 5.4E-07 1.2E-11 80.6 12.5 119 27-173 3-140 (292)
66 PLN02427 UDP-apiose/xylose syn 98.6 4.5E-07 9.7E-12 84.0 11.7 117 24-146 10-136 (386)
67 COG1086 Predicted nucleoside-d 98.6 7.4E-07 1.6E-11 85.2 13.1 191 27-240 249-467 (588)
68 PLN02206 UDP-glucuronate decar 98.6 8E-07 1.7E-11 84.2 13.3 123 17-145 108-232 (442)
69 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 4.2E-07 9.2E-12 87.3 11.3 120 27-173 4-141 (503)
70 PRK09260 3-hydroxybutyryl-CoA 98.6 4.5E-07 9.8E-12 81.0 10.5 118 29-173 2-138 (288)
71 PRK08268 3-hydroxy-acyl-CoA de 98.6 5.6E-07 1.2E-11 86.6 11.6 118 28-173 7-143 (507)
72 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 2E-07 4.3E-12 76.1 7.0 94 30-145 1-103 (157)
73 PRK06130 3-hydroxybutyryl-CoA 98.5 1.2E-06 2.6E-11 78.9 11.4 119 28-173 4-136 (311)
74 PF02719 Polysacc_synt_2: Poly 98.5 1.3E-07 2.7E-12 84.5 4.9 119 31-150 1-137 (293)
75 PLN00198 anthocyanidin reducta 98.5 3.3E-06 7.1E-11 76.6 13.8 176 27-204 8-202 (338)
76 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.8E-06 3.9E-11 77.9 11.5 119 29-173 3-139 (308)
77 PLN02545 3-hydroxybutyryl-CoA 98.5 6.2E-07 1.3E-11 80.3 8.2 119 27-173 3-140 (295)
78 PLN02662 cinnamyl-alcohol dehy 98.4 3.9E-06 8.4E-11 75.2 13.2 115 28-145 4-126 (322)
79 PLN02572 UDP-sulfoquinovose sy 98.4 1E-06 2.2E-11 83.5 9.6 174 27-204 46-262 (442)
80 PLN02650 dihydroflavonol-4-red 98.4 4E-06 8.8E-11 76.5 13.1 175 28-204 5-197 (351)
81 KOG1502 Flavonol reductase/cin 98.4 3.5E-06 7.5E-11 76.2 12.3 117 27-148 5-130 (327)
82 PRK07531 bifunctional 3-hydrox 98.4 1.7E-06 3.7E-11 83.1 11.1 119 29-173 5-137 (495)
83 TIGR01181 dTDP_gluc_dehyt dTDP 98.4 3.2E-06 7E-11 75.0 11.8 167 30-204 1-184 (317)
84 PRK08125 bifunctional UDP-gluc 98.4 3.1E-06 6.8E-11 84.0 12.9 178 17-204 304-497 (660)
85 COG0240 GpsA Glycerol-3-phosph 98.4 8.6E-06 1.9E-10 73.7 14.2 114 28-169 1-128 (329)
86 PRK10217 dTDP-glucose 4,6-dehy 98.4 5.7E-06 1.2E-10 75.4 12.7 175 28-204 1-194 (355)
87 PRK15057 UDP-glucose 6-dehydro 98.4 4.2E-06 9E-11 78.1 11.8 110 29-150 1-123 (388)
88 CHL00194 ycf39 Ycf39; Provisio 98.4 2.2E-06 4.7E-11 77.4 9.6 105 29-145 1-109 (317)
89 TIGR02622 CDP_4_6_dhtase CDP-g 98.3 8.7E-06 1.9E-10 74.3 12.8 172 28-204 4-193 (349)
90 PRK11908 NAD-dependent epimera 98.3 5.2E-06 1.1E-10 75.6 11.2 110 28-146 1-118 (347)
91 PLN02214 cinnamoyl-CoA reducta 98.3 1.1E-05 2.3E-10 73.8 12.6 110 28-145 10-126 (342)
92 COG1087 GalE UDP-glucose 4-epi 98.3 3.1E-06 6.7E-11 75.4 8.5 164 29-204 1-176 (329)
93 TIGR03466 HpnA hopanoid-associ 98.3 6.3E-06 1.4E-10 73.7 10.3 108 29-145 1-112 (328)
94 PLN02695 GDP-D-mannose-3',5'-e 98.3 4.2E-06 9E-11 77.4 9.3 170 27-205 20-202 (370)
95 TIGR03589 PseB UDP-N-acetylglu 98.3 6.3E-06 1.4E-10 74.7 10.1 114 27-145 3-124 (324)
96 PRK10084 dTDP-glucose 4,6 dehy 98.2 1.1E-05 2.4E-10 73.4 11.5 174 29-204 1-201 (352)
97 TIGR03026 NDP-sugDHase nucleot 98.2 1.3E-05 2.9E-10 75.1 11.8 118 29-160 1-136 (411)
98 PLN02989 cinnamyl-alcohol dehy 98.2 3.4E-05 7.4E-10 69.4 13.6 116 28-145 5-128 (325)
99 COG0451 WcaG Nucleoside-diphos 98.2 9.2E-06 2E-10 72.1 9.8 164 30-204 2-176 (314)
100 PLN02778 3,5-epimerase/4-reduc 98.2 3.3E-05 7.1E-10 69.3 13.0 90 27-138 8-104 (298)
101 PRK09987 dTDP-4-dehydrorhamnos 98.2 4.9E-06 1.1E-10 74.5 7.7 99 29-145 1-103 (299)
102 COG2085 Predicted dinucleotide 98.2 1.8E-05 3.9E-10 67.2 10.4 93 28-148 1-96 (211)
103 PRK00094 gpsA NAD(P)H-dependen 98.2 1.7E-05 3.7E-10 71.5 11.1 100 28-149 1-109 (325)
104 PRK11064 wecC UDP-N-acetyl-D-m 98.2 1.2E-05 2.7E-10 75.6 10.4 108 26-151 1-126 (415)
105 PRK12921 2-dehydropantoate 2-r 98.2 4.7E-05 1E-09 68.1 13.8 115 29-172 1-122 (305)
106 PF13460 NAD_binding_10: NADH( 98.2 2.2E-05 4.8E-10 64.6 10.6 93 31-145 1-97 (183)
107 PLN02986 cinnamyl-alcohol dehy 98.2 4.9E-05 1.1E-09 68.3 13.6 116 28-145 5-127 (322)
108 PLN03209 translocon at the inn 98.2 1.6E-05 3.4E-10 77.2 10.7 115 28-145 80-207 (576)
109 PRK06522 2-dehydropantoate 2-r 98.1 5.2E-05 1.1E-09 67.6 13.4 100 29-150 1-105 (304)
110 TIGR01777 yfcH conserved hypot 98.1 8.7E-06 1.9E-10 71.6 8.1 98 31-137 1-102 (292)
111 PLN02583 cinnamoyl-CoA reducta 98.1 5.8E-05 1.3E-09 67.4 13.5 113 29-145 7-127 (297)
112 PRK10675 UDP-galactose-4-epime 98.1 3.3E-05 7.1E-10 69.8 11.9 113 29-145 1-123 (338)
113 PLN02896 cinnamyl-alcohol dehy 98.1 4.1E-05 8.9E-10 69.9 12.6 173 27-204 9-210 (353)
114 PTZ00345 glycerol-3-phosphate 98.1 2.5E-05 5.5E-10 72.2 11.3 105 21-145 4-129 (365)
115 PRK08229 2-dehydropantoate 2-r 98.1 3.8E-05 8.3E-10 69.9 12.4 97 28-150 2-112 (341)
116 PF03807 F420_oxidored: NADP o 98.1 7.8E-06 1.7E-10 60.6 6.1 94 30-147 1-96 (96)
117 TIGR01472 gmd GDP-mannose 4,6- 98.1 2.1E-05 4.6E-10 71.5 10.1 115 29-145 1-131 (343)
118 TIGR01214 rmlD dTDP-4-dehydror 98.1 1.5E-05 3.2E-10 70.2 8.1 95 30-145 1-99 (287)
119 PLN02260 probable rhamnose bio 98.1 6.7E-05 1.5E-09 74.5 13.5 173 27-204 5-193 (668)
120 KOG1429 dTDP-glucose 4-6-dehyd 98.1 8.2E-06 1.8E-10 72.1 6.1 119 21-145 20-140 (350)
121 PRK14619 NAD(P)H-dependent gly 98.0 2.9E-05 6.4E-10 70.0 9.8 79 27-146 3-83 (308)
122 PRK07201 short chain dehydroge 98.0 6.6E-05 1.4E-09 74.0 12.7 113 29-145 1-124 (657)
123 PF03446 NAD_binding_2: NAD bi 98.0 2.5E-05 5.5E-10 63.9 7.9 95 28-149 1-97 (163)
124 COG1748 LYS9 Saccharopine dehy 98.0 0.0002 4.4E-09 66.5 14.4 149 28-205 1-159 (389)
125 PLN02657 3,8-divinyl protochlo 98.0 5.4E-05 1.2E-09 70.6 10.7 117 21-145 53-181 (390)
126 PRK14618 NAD(P)H-dependent gly 98.0 4.9E-05 1.1E-09 69.1 10.1 96 27-149 3-108 (328)
127 PRK06194 hypothetical protein; 98.0 0.00016 3.6E-09 63.7 13.2 159 27-201 5-191 (287)
128 KOG1430 C-3 sterol dehydrogena 98.0 5.6E-05 1.2E-09 69.5 10.3 115 26-146 2-126 (361)
129 PLN02240 UDP-glucose 4-epimera 98.0 0.00011 2.3E-09 66.8 12.1 116 27-145 4-131 (352)
130 PRK11150 rfaD ADP-L-glycero-D- 98.0 5.7E-05 1.2E-09 67.5 10.1 108 31-145 2-115 (308)
131 PRK08269 3-hydroxybutyryl-CoA 98.0 5.7E-05 1.2E-09 68.6 9.8 110 40-173 1-136 (314)
132 PRK15182 Vi polysaccharide bio 97.9 0.00014 3E-09 68.7 12.8 108 27-150 5-126 (425)
133 PF01370 Epimerase: NAD depend 97.9 3.1E-05 6.8E-10 65.8 7.5 163 31-204 1-174 (236)
134 PRK06249 2-dehydropantoate 2-r 97.9 0.00013 2.7E-09 66.0 11.8 118 27-173 4-127 (313)
135 PLN02653 GDP-mannose 4,6-dehyd 97.9 8.2E-05 1.8E-09 67.5 10.6 109 27-137 5-126 (340)
136 TIGR03376 glycerol3P_DH glycer 97.9 8E-05 1.7E-09 68.3 10.3 71 30-104 1-90 (342)
137 PRK12439 NAD(P)H-dependent gly 97.9 9.4E-05 2E-09 67.8 10.8 98 27-149 6-115 (341)
138 PRK14620 NAD(P)H-dependent gly 97.9 9.5E-05 2.1E-09 67.1 10.5 97 29-149 1-110 (326)
139 TIGR02197 heptose_epim ADP-L-g 97.8 0.00012 2.5E-09 65.2 9.8 109 31-145 1-113 (314)
140 PRK12320 hypothetical protein; 97.8 8.2E-05 1.8E-09 74.0 9.1 98 29-145 1-101 (699)
141 PF10727 Rossmann-like: Rossma 97.8 0.00013 2.8E-09 57.6 8.4 101 27-153 9-114 (127)
142 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00023 4.9E-09 65.8 11.0 119 29-161 10-145 (436)
143 PRK11199 tyrA bifunctional cho 97.8 0.00023 5E-09 66.1 11.1 60 21-104 91-150 (374)
144 PRK05865 hypothetical protein; 97.8 5.9E-05 1.3E-09 76.6 7.2 104 29-148 1-105 (854)
145 PLN02686 cinnamoyl-CoA reducta 97.7 0.00011 2.3E-09 67.9 8.1 117 26-145 51-179 (367)
146 TIGR00872 gnd_rel 6-phosphoglu 97.7 0.00035 7.6E-09 62.8 10.9 94 29-147 1-95 (298)
147 PF01118 Semialdhyde_dh: Semia 97.7 8.3E-05 1.8E-09 57.9 5.9 72 30-104 1-74 (121)
148 PRK13394 3-hydroxybutyrate deh 97.7 0.00043 9.4E-09 59.8 11.0 115 27-145 6-143 (262)
149 PRK07231 fabG 3-ketoacyl-(acyl 97.7 0.00087 1.9E-08 57.5 12.8 114 27-146 4-141 (251)
150 PRK07417 arogenate dehydrogena 97.7 0.00031 6.8E-09 62.5 9.9 65 29-104 1-65 (279)
151 PRK07806 short chain dehydroge 97.7 0.00053 1.1E-08 58.9 11.1 116 27-146 5-135 (248)
152 PRK07634 pyrroline-5-carboxyla 97.7 0.00059 1.3E-08 59.1 11.4 101 25-149 1-103 (245)
153 PLN02253 xanthoxin dehydrogena 97.7 0.00096 2.1E-08 58.6 12.8 149 26-191 16-188 (280)
154 PRK08267 short chain dehydroge 97.7 0.00024 5.2E-09 61.7 8.7 112 29-146 2-136 (260)
155 PRK08655 prephenate dehydrogen 97.7 0.00042 9E-09 65.7 10.8 66 29-104 1-66 (437)
156 COG0300 DltE Short-chain dehyd 97.6 0.001 2.2E-08 58.8 12.5 117 26-146 4-143 (265)
157 PF04321 RmlD_sub_bind: RmlD s 97.6 3.2E-05 6.9E-10 69.1 2.9 98 29-145 1-100 (286)
158 PRK12429 3-hydroxybutyrate deh 97.6 0.00071 1.5E-08 58.3 11.3 115 27-146 3-140 (258)
159 PLN02688 pyrroline-5-carboxyla 97.6 0.00046 1E-08 60.7 10.2 95 29-149 1-99 (266)
160 PLN02725 GDP-4-keto-6-deoxyman 97.6 0.00012 2.5E-09 65.0 6.4 94 33-145 2-100 (306)
161 PRK06928 pyrroline-5-carboxyla 97.6 0.00072 1.6E-08 60.2 11.4 99 28-149 1-102 (277)
162 PRK07502 cyclohexadienyl dehyd 97.6 0.00055 1.2E-08 61.7 10.3 70 28-105 6-75 (307)
163 PRK11880 pyrroline-5-carboxyla 97.6 0.00056 1.2E-08 60.1 10.1 96 28-149 2-98 (267)
164 TIGR01746 Thioester-redct thio 97.6 0.00049 1.1E-08 62.1 10.0 114 30-145 1-135 (367)
165 TIGR01179 galE UDP-glucose-4-e 97.6 0.00096 2.1E-08 59.3 11.7 110 30-145 1-120 (328)
166 PRK07680 late competence prote 97.6 0.00067 1.5E-08 60.1 10.4 97 29-149 1-100 (273)
167 TIGR01505 tartro_sem_red 2-hyd 97.6 0.00036 7.9E-09 62.3 8.8 64 30-105 1-64 (291)
168 PRK12367 short chain dehydroge 97.6 0.00071 1.5E-08 59.0 10.4 107 21-131 7-117 (245)
169 PRK06182 short chain dehydroge 97.6 0.00063 1.4E-08 59.6 10.0 114 27-146 2-133 (273)
170 COG2910 Putative NADH-flavin r 97.6 0.00045 9.8E-09 57.7 8.3 105 29-146 1-105 (211)
171 PRK12828 short chain dehydroge 97.6 0.00056 1.2E-08 58.0 9.4 116 28-146 7-141 (239)
172 PRK08213 gluconate 5-dehydroge 97.6 0.0014 3E-08 56.9 12.0 115 28-146 12-149 (259)
173 PLN00141 Tic62-NAD(P)-related 97.5 0.00037 8E-09 60.6 8.2 110 27-145 16-131 (251)
174 PRK07326 short chain dehydroge 97.5 0.0013 2.8E-08 56.1 11.4 115 28-147 6-141 (237)
175 PRK11559 garR tartronate semia 97.5 0.00055 1.2E-08 61.1 9.5 65 29-105 3-67 (296)
176 PRK06545 prephenate dehydrogen 97.5 0.00067 1.4E-08 62.6 10.2 68 29-104 1-68 (359)
177 PRK07102 short chain dehydroge 97.5 0.00093 2E-08 57.4 10.5 116 28-146 1-135 (243)
178 PRK12384 sorbitol-6-phosphate 97.5 0.0021 4.6E-08 55.6 12.8 118 29-148 3-143 (259)
179 PRK07679 pyrroline-5-carboxyla 97.5 0.0012 2.5E-08 58.8 11.1 99 27-149 2-103 (279)
180 TIGR01832 kduD 2-deoxy-D-gluco 97.5 0.0021 4.6E-08 55.2 12.5 116 27-146 4-140 (248)
181 PRK06180 short chain dehydroge 97.5 0.001 2.2E-08 58.5 10.7 115 27-146 3-137 (277)
182 PF02558 ApbA: Ketopantoate re 97.5 0.00059 1.3E-08 54.6 8.4 114 31-173 1-122 (151)
183 PRK12491 pyrroline-5-carboxyla 97.5 0.0018 3.9E-08 57.6 12.2 96 29-149 3-101 (272)
184 PRK12829 short chain dehydroge 97.5 0.001 2.3E-08 57.5 10.5 36 27-64 10-45 (264)
185 PLN02996 fatty acyl-CoA reduct 97.5 0.0018 3.9E-08 62.3 12.9 108 27-135 10-150 (491)
186 PRK05717 oxidoreductase; Valid 97.5 0.00056 1.2E-08 59.3 8.7 146 28-190 10-176 (255)
187 PRK08945 putative oxoacyl-(acy 97.5 0.002 4.4E-08 55.4 12.1 119 25-146 9-152 (247)
188 COG1090 Predicted nucleoside-d 97.5 0.00082 1.8E-08 59.4 9.6 104 31-145 1-110 (297)
189 PRK05708 2-dehydropantoate 2-r 97.5 0.0027 5.8E-08 57.3 13.2 117 28-173 2-125 (305)
190 PRK05875 short chain dehydroge 97.5 0.002 4.2E-08 56.4 12.1 118 27-146 6-146 (276)
191 PRK06914 short chain dehydroge 97.5 0.0015 3.4E-08 57.2 11.4 114 29-145 4-139 (280)
192 PRK12936 3-ketoacyl-(acyl-carr 97.5 0.0022 4.7E-08 54.7 12.0 115 27-148 5-141 (245)
193 PLN00016 RNA-binding protein; 97.5 0.001 2.3E-08 61.5 10.6 97 28-145 52-164 (378)
194 PTZ00142 6-phosphogluconate de 97.5 0.00064 1.4E-08 65.0 9.3 96 29-147 2-103 (470)
195 TIGR03206 benzo_BadH 2-hydroxy 97.5 0.002 4.3E-08 55.2 11.7 114 28-146 3-139 (250)
196 PRK12480 D-lactate dehydrogena 97.5 0.0011 2.4E-08 60.6 10.5 93 25-146 143-235 (330)
197 COG1893 ApbA Ketopantoate redu 97.5 0.00091 2E-08 60.5 9.8 120 29-176 1-126 (307)
198 PRK08643 acetoin reductase; Va 97.5 0.0059 1.3E-07 52.7 14.6 115 29-147 3-140 (256)
199 PRK12826 3-ketoacyl-(acyl-carr 97.4 0.0016 3.4E-08 55.7 10.8 115 27-146 5-142 (251)
200 PRK14982 acyl-ACP reductase; P 97.4 0.0007 1.5E-08 62.0 8.9 96 27-150 154-251 (340)
201 PRK07814 short chain dehydroge 97.4 0.0018 3.8E-08 56.5 11.2 116 27-146 9-147 (263)
202 PRK07774 short chain dehydroge 97.4 0.0054 1.2E-07 52.6 14.1 114 28-145 6-144 (250)
203 PRK12939 short chain dehydroge 97.4 0.0032 6.8E-08 53.9 12.5 116 27-146 6-143 (250)
204 TIGR02354 thiF_fam2 thiamine b 97.4 0.0012 2.5E-08 56.2 9.5 35 27-63 20-54 (200)
205 PLN02260 probable rhamnose bio 97.4 0.0016 3.4E-08 64.8 11.9 89 27-137 379-474 (668)
206 PRK07069 short chain dehydroge 97.4 0.007 1.5E-07 51.9 14.3 114 30-146 1-138 (251)
207 COG1091 RfbD dTDP-4-dehydrorha 97.4 0.00069 1.5E-08 60.4 8.0 95 29-145 1-99 (281)
208 PRK05653 fabG 3-ketoacyl-(acyl 97.4 0.00089 1.9E-08 57.0 8.6 115 27-145 4-140 (246)
209 PRK07523 gluconate 5-dehydroge 97.4 0.0034 7.4E-08 54.2 12.3 116 28-147 10-147 (255)
210 COG0287 TyrA Prephenate dehydr 97.4 0.003 6.6E-08 56.4 12.1 65 28-105 3-73 (279)
211 PRK06179 short chain dehydroge 97.4 0.00049 1.1E-08 60.1 6.9 35 27-63 3-37 (270)
212 PLN02968 Probable N-acetyl-gam 97.4 0.0012 2.6E-08 61.5 9.7 77 26-105 36-113 (381)
213 PLN02256 arogenate dehydrogena 97.4 0.0011 2.3E-08 60.0 9.1 65 27-104 35-100 (304)
214 PRK07890 short chain dehydroge 97.4 0.0033 7.1E-08 54.2 11.9 115 28-146 5-141 (258)
215 PF03949 Malic_M: Malic enzyme 97.4 0.00026 5.7E-09 62.2 4.9 122 27-174 24-167 (255)
216 PRK06197 short chain dehydroge 97.3 0.0033 7.1E-08 56.2 12.1 117 27-146 15-152 (306)
217 PRK12490 6-phosphogluconate de 97.3 0.0014 3.1E-08 58.8 9.7 91 29-146 1-95 (299)
218 PRK07067 sorbitol dehydrogenas 97.3 0.0019 4.1E-08 55.9 10.1 111 29-146 7-140 (257)
219 COG2084 MmsB 3-hydroxyisobutyr 97.3 0.0012 2.6E-08 59.0 8.9 66 29-105 1-66 (286)
220 PRK08278 short chain dehydroge 97.3 0.0069 1.5E-07 53.2 13.7 159 28-202 6-193 (273)
221 PRK08219 short chain dehydroge 97.3 0.0014 3E-08 55.3 8.9 73 28-107 3-82 (227)
222 PRK10538 malonic semialdehyde 97.3 0.0012 2.6E-08 57.0 8.6 34 29-64 1-34 (248)
223 PRK08818 prephenate dehydrogen 97.3 0.0016 3.5E-08 60.4 9.7 56 27-104 3-59 (370)
224 PRK12825 fabG 3-ketoacyl-(acyl 97.3 0.0048 1.1E-07 52.4 12.1 35 27-63 5-39 (249)
225 PRK06924 short chain dehydroge 97.3 0.0031 6.7E-08 54.2 11.0 34 29-64 2-35 (251)
226 PRK09599 6-phosphogluconate de 97.3 0.0035 7.6E-08 56.3 11.6 64 29-104 1-67 (301)
227 TIGR02632 RhaD_aldol-ADH rhamn 97.3 0.0042 9.2E-08 62.0 13.2 118 27-146 413-553 (676)
228 PRK08251 short chain dehydroge 97.3 0.0047 1E-07 53.0 11.9 115 29-146 3-140 (248)
229 PRK05854 short chain dehydroge 97.3 0.0036 7.7E-08 56.4 11.6 116 27-146 13-150 (313)
230 PRK05866 short chain dehydroge 97.3 0.0034 7.4E-08 56.0 11.2 34 28-63 40-73 (293)
231 PRK09135 pteridine reductase; 97.3 0.0023 4.9E-08 54.7 9.7 105 28-135 6-130 (249)
232 cd00762 NAD_bind_malic_enz NAD 97.3 0.00049 1.1E-08 60.4 5.5 138 13-175 10-168 (254)
233 PRK06482 short chain dehydroge 97.3 0.0055 1.2E-07 53.7 12.3 113 29-146 3-135 (276)
234 PRK07424 bifunctional sterol d 97.3 0.0035 7.6E-08 58.9 11.6 104 27-135 177-291 (406)
235 PRK06057 short chain dehydroge 97.3 0.0015 3.2E-08 56.6 8.4 37 26-64 5-41 (255)
236 PRK12827 short chain dehydroge 97.2 0.005 1.1E-07 52.6 11.6 116 27-146 5-147 (249)
237 PRK06138 short chain dehydroge 97.2 0.0047 1E-07 53.0 11.5 35 28-64 5-39 (252)
238 COG0569 TrkA K+ transport syst 97.2 0.0018 3.8E-08 56.0 8.7 71 29-105 1-75 (225)
239 PRK07666 fabG 3-ketoacyl-(acyl 97.2 0.0028 6.1E-08 54.1 10.0 117 28-148 7-145 (239)
240 PRK05993 short chain dehydroge 97.2 0.0021 4.5E-08 56.6 9.4 109 29-146 5-135 (277)
241 PRK06172 short chain dehydroge 97.2 0.0047 1E-07 53.2 11.4 36 27-64 6-41 (253)
242 PRK07063 short chain dehydroge 97.2 0.0073 1.6E-07 52.3 12.6 117 27-146 6-145 (260)
243 TIGR03649 ergot_EASG ergot alk 97.2 0.0013 2.9E-08 58.0 8.1 33 30-64 1-33 (285)
244 KOG1371 UDP-glucose 4-epimeras 97.2 0.003 6.5E-08 57.1 10.2 105 28-136 2-119 (343)
245 PRK07856 short chain dehydroge 97.2 0.0041 8.9E-08 53.7 11.0 110 27-146 5-135 (252)
246 PRK06181 short chain dehydroge 97.2 0.0061 1.3E-07 52.8 12.1 115 29-147 2-138 (263)
247 PRK12549 shikimate 5-dehydroge 97.2 0.0015 3.2E-08 58.5 8.2 72 27-103 126-199 (284)
248 PRK06841 short chain dehydroge 97.2 0.0017 3.8E-08 55.9 8.5 114 27-146 14-148 (255)
249 TIGR01963 PHB_DH 3-hydroxybuty 97.2 0.0058 1.3E-07 52.4 11.8 113 29-146 2-137 (255)
250 PRK15461 NADH-dependent gamma- 97.2 0.00089 1.9E-08 60.1 6.8 65 29-105 2-66 (296)
251 PRK12742 oxidoreductase; Provi 97.2 0.0048 1E-07 52.5 11.0 35 27-63 5-39 (237)
252 PRK05884 short chain dehydroge 97.2 0.0016 3.5E-08 55.6 8.0 33 29-63 1-33 (223)
253 PRK07453 protochlorophyllide o 97.2 0.0029 6.3E-08 57.0 10.1 115 27-145 5-144 (322)
254 PRK05650 short chain dehydroge 97.2 0.0032 7E-08 55.0 10.1 113 29-146 1-136 (270)
255 COG1712 Predicted dinucleotide 97.2 0.0033 7.1E-08 54.1 9.6 93 29-146 1-94 (255)
256 PRK12746 short chain dehydroge 97.2 0.012 2.7E-07 50.5 13.6 115 28-146 6-147 (254)
257 PRK06198 short chain dehydroge 97.2 0.028 6E-07 48.5 15.8 116 27-146 5-144 (260)
258 PLN02780 ketoreductase/ oxidor 97.2 0.0046 1E-07 56.0 11.3 116 28-146 53-193 (320)
259 cd05312 NAD_bind_1_malic_enz N 97.2 0.001 2.2E-08 59.3 6.7 105 24-149 21-144 (279)
260 PRK07577 short chain dehydroge 97.2 0.0015 3.3E-08 55.5 7.7 35 28-64 3-37 (234)
261 PRK05876 short chain dehydroge 97.2 0.0029 6.3E-08 55.9 9.7 115 28-146 6-143 (275)
262 PRK13243 glyoxylate reductase; 97.2 0.0018 4E-08 59.2 8.6 99 25-150 147-247 (333)
263 PRK08605 D-lactate dehydrogena 97.2 0.0014 3.1E-08 59.9 7.9 97 25-149 143-242 (332)
264 TIGR01724 hmd_rel H2-forming N 97.2 0.015 3.1E-07 52.9 14.0 57 40-105 31-90 (341)
265 PRK12937 short chain dehydroge 97.2 0.0028 6.1E-08 54.1 9.3 115 28-146 5-140 (245)
266 PRK08085 gluconate 5-dehydroge 97.2 0.0051 1.1E-07 53.1 11.0 116 27-146 8-145 (254)
267 PRK09291 short chain dehydroge 97.2 0.0067 1.4E-07 52.3 11.6 113 29-146 3-132 (257)
268 PTZ00431 pyrroline carboxylate 97.2 0.0025 5.4E-08 56.1 9.0 91 27-149 2-94 (260)
269 PRK06398 aldose dehydrogenase; 97.2 0.0023 5.1E-08 55.7 8.8 111 28-146 6-131 (258)
270 COG1088 RfbB dTDP-D-glucose 4, 97.2 0.0038 8.3E-08 55.8 10.0 116 29-144 1-124 (340)
271 PRK09186 flagellin modificatio 97.2 0.0059 1.3E-07 52.6 11.3 35 27-63 3-37 (256)
272 PRK08507 prephenate dehydrogen 97.2 0.0031 6.8E-08 55.9 9.7 66 29-104 1-66 (275)
273 PRK08993 2-deoxy-D-gluconate 3 97.2 0.013 2.9E-07 50.6 13.5 115 28-146 10-145 (253)
274 PRK12935 acetoacetyl-CoA reduc 97.1 0.004 8.7E-08 53.4 10.1 115 28-146 6-143 (247)
275 PRK08340 glucose-1-dehydrogena 97.1 0.0082 1.8E-07 52.1 12.1 34 29-64 1-34 (259)
276 PRK08263 short chain dehydroge 97.1 0.0077 1.7E-07 52.8 11.9 111 29-145 4-135 (275)
277 PRK12745 3-ketoacyl-(acyl-carr 97.1 0.011 2.3E-07 50.9 12.5 33 29-63 3-35 (256)
278 COG4221 Short-chain alcohol de 97.1 0.015 3.2E-07 50.7 13.0 132 29-175 7-157 (246)
279 PRK07024 short chain dehydroge 97.1 0.0048 1E-07 53.5 10.3 33 29-63 3-35 (257)
280 KOG1205 Predicted dehydrogenas 97.1 0.0045 9.8E-08 55.3 10.1 121 26-150 10-154 (282)
281 PRK07060 short chain dehydroge 97.1 0.0012 2.7E-08 56.3 6.5 116 27-146 8-137 (245)
282 PRK07576 short chain dehydroge 97.1 0.0054 1.2E-07 53.6 10.6 117 28-148 9-146 (264)
283 PRK12823 benD 1,6-dihydroxycyc 97.1 0.0068 1.5E-07 52.4 11.2 36 27-64 7-42 (260)
284 PRK06935 2-deoxy-D-gluconate 3 97.1 0.008 1.7E-07 52.1 11.5 116 27-147 14-151 (258)
285 PRK09242 tropinone reductase; 97.1 0.012 2.5E-07 51.0 12.4 116 28-146 9-147 (257)
286 PRK06124 gluconate 5-dehydroge 97.1 0.0032 6.9E-08 54.4 8.8 117 27-148 10-149 (256)
287 PRK06128 oxidoreductase; Provi 97.1 0.0094 2E-07 53.2 12.1 115 28-146 55-192 (300)
288 PRK06101 short chain dehydroge 97.1 0.0062 1.3E-07 52.3 10.5 112 29-146 2-128 (240)
289 PRK05557 fabG 3-ketoacyl-(acyl 97.1 0.0038 8.2E-08 53.1 9.1 116 27-146 4-142 (248)
290 KOG2666 UDP-glucose/GDP-mannos 97.1 0.00084 1.8E-08 60.4 5.0 77 28-109 1-91 (481)
291 PRK08265 short chain dehydroge 97.1 0.019 4.1E-07 50.0 13.6 36 27-64 5-40 (261)
292 PRK15469 ghrA bifunctional gly 97.1 0.0049 1.1E-07 55.9 10.1 92 27-145 135-226 (312)
293 PRK12744 short chain dehydroge 97.1 0.024 5.1E-07 49.1 14.1 146 28-190 8-178 (257)
294 PF05368 NmrA: NmrA-like famil 97.1 0.0018 3.9E-08 55.5 6.9 95 31-138 1-96 (233)
295 PRK06196 oxidoreductase; Provi 97.1 0.014 3E-07 52.5 12.9 114 27-146 25-156 (315)
296 PRK08226 short chain dehydroge 97.0 0.008 1.7E-07 52.1 11.1 116 27-146 5-141 (263)
297 COG0345 ProC Pyrroline-5-carbo 97.0 0.0065 1.4E-07 53.8 10.4 97 28-149 1-99 (266)
298 PLN02712 arogenate dehydrogena 97.0 0.0041 8.8E-08 62.0 10.2 90 27-145 51-143 (667)
299 PRK07454 short chain dehydroge 97.0 0.013 2.8E-07 50.1 12.1 35 28-64 6-40 (241)
300 PRK06701 short chain dehydroge 97.0 0.015 3.2E-07 51.8 12.9 116 27-146 45-182 (290)
301 PRK05565 fabG 3-ketoacyl-(acyl 97.0 0.011 2.4E-07 50.3 11.7 34 28-63 5-39 (247)
302 PRK05693 short chain dehydroge 97.0 0.004 8.7E-08 54.5 9.1 33 29-63 2-34 (274)
303 KOG2305 3-hydroxyacyl-CoA dehy 97.0 0.0011 2.3E-08 57.2 5.1 108 28-154 3-127 (313)
304 PF01488 Shikimate_DH: Shikima 97.0 0.0023 4.9E-08 50.8 6.8 74 27-107 11-86 (135)
305 PRK06500 short chain dehydroge 97.0 0.017 3.7E-07 49.3 12.9 111 28-145 6-136 (249)
306 TIGR01850 argC N-acetyl-gamma- 97.0 0.0035 7.6E-08 57.7 8.9 74 29-105 1-77 (346)
307 TIGR00873 gnd 6-phosphoglucona 97.0 0.0038 8.2E-08 59.7 9.4 97 30-146 1-99 (467)
308 PRK12481 2-deoxy-D-gluconate 3 97.0 0.0055 1.2E-07 53.1 9.8 116 27-146 7-143 (251)
309 PRK09072 short chain dehydroge 97.0 0.011 2.5E-07 51.3 11.8 115 27-146 4-139 (263)
310 PRK06476 pyrroline-5-carboxyla 97.0 0.0034 7.3E-08 55.1 8.5 68 29-104 1-69 (258)
311 PRK07904 short chain dehydroge 97.0 0.009 2E-07 52.0 11.1 116 27-146 7-146 (253)
312 PRK07097 gluconate 5-dehydroge 97.0 0.016 3.5E-07 50.4 12.7 116 28-148 10-148 (265)
313 PRK07023 short chain dehydroge 97.0 0.0033 7.3E-08 53.9 8.2 35 28-64 1-35 (243)
314 PRK07832 short chain dehydroge 97.0 0.016 3.4E-07 50.8 12.6 117 29-148 1-140 (272)
315 TIGR01745 asd_gamma aspartate- 97.0 0.003 6.4E-08 58.4 8.2 71 29-105 1-73 (366)
316 PRK15059 tartronate semialdehy 97.0 0.0027 5.8E-08 57.0 7.8 64 29-105 1-64 (292)
317 PRK07074 short chain dehydroge 97.0 0.0057 1.2E-07 52.9 9.6 34 29-64 3-36 (257)
318 PLN02503 fatty acyl-CoA reduct 97.0 0.0087 1.9E-07 59.0 11.9 109 27-136 118-258 (605)
319 TIGR02415 23BDH acetoin reduct 97.0 0.0065 1.4E-07 52.2 9.9 112 30-145 2-136 (254)
320 PRK07574 formate dehydrogenase 97.0 0.0041 8.9E-08 58.0 9.0 99 26-149 190-290 (385)
321 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.0078 1.7E-07 49.9 9.8 32 30-63 1-32 (174)
322 PRK07062 short chain dehydroge 97.0 0.021 4.6E-07 49.5 13.1 116 28-146 8-146 (265)
323 PRK06523 short chain dehydroge 97.0 0.0016 3.5E-08 56.4 5.9 36 27-64 8-43 (260)
324 PRK03659 glutathione-regulated 97.0 0.0062 1.4E-07 60.0 10.6 138 28-197 400-542 (601)
325 PRK07478 short chain dehydroge 97.0 0.018 4E-07 49.6 12.5 114 28-146 6-143 (254)
326 PRK08277 D-mannonate oxidoredu 96.9 0.025 5.4E-07 49.5 13.4 35 27-63 9-43 (278)
327 PRK07825 short chain dehydroge 96.9 0.016 3.5E-07 50.6 12.2 114 27-146 4-137 (273)
328 TIGR01830 3oxo_ACP_reduc 3-oxo 96.9 0.0039 8.5E-08 52.9 8.0 114 31-148 1-137 (239)
329 PF01113 DapB_N: Dihydrodipico 96.9 0.0051 1.1E-07 48.1 8.0 70 29-103 1-74 (124)
330 PRK08644 thiamine biosynthesis 96.9 0.0056 1.2E-07 52.5 8.9 35 27-63 27-61 (212)
331 PRK08642 fabG 3-ketoacyl-(acyl 96.9 0.027 6E-07 48.2 13.3 34 28-63 5-38 (253)
332 PRK13302 putative L-aspartate 96.9 0.0064 1.4E-07 54.0 9.5 70 26-105 4-76 (271)
333 TIGR01327 PGDH D-3-phosphoglyc 96.9 0.0036 7.9E-08 60.7 8.5 103 21-149 131-235 (525)
334 PRK12747 short chain dehydroge 96.9 0.035 7.7E-07 47.7 13.9 33 28-62 4-36 (252)
335 PRK08264 short chain dehydroge 96.9 0.0067 1.5E-07 51.7 9.3 113 27-147 5-134 (238)
336 PRK05867 short chain dehydroge 96.9 0.023 5E-07 49.0 12.7 115 27-145 8-145 (253)
337 COG0136 Asd Aspartate-semialde 96.9 0.0052 1.1E-07 55.9 8.7 73 28-105 1-75 (334)
338 PRK05855 short chain dehydroge 96.9 0.01 2.2E-07 57.2 11.3 116 27-146 314-452 (582)
339 PRK06598 aspartate-semialdehyd 96.9 0.0045 9.7E-08 57.3 8.4 72 28-105 1-74 (369)
340 PRK14806 bifunctional cyclohex 96.9 0.015 3.3E-07 58.5 13.0 93 29-145 4-97 (735)
341 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0025 5.4E-08 53.4 6.1 76 27-105 27-106 (194)
342 PRK06077 fabG 3-ketoacyl-(acyl 96.9 0.012 2.5E-07 50.5 10.5 33 28-62 6-38 (252)
343 PRK06463 fabG 3-ketoacyl-(acyl 96.9 0.0086 1.9E-07 51.8 9.7 112 27-146 6-138 (255)
344 TIGR02356 adenyl_thiF thiazole 96.9 0.003 6.6E-08 53.6 6.7 35 27-63 20-54 (202)
345 PRK12824 acetoacetyl-CoA reduc 96.9 0.016 3.4E-07 49.4 11.2 114 29-146 3-139 (245)
346 PRK07831 short chain dehydroge 96.9 0.028 6E-07 48.8 12.9 35 27-63 16-51 (262)
347 PRK06113 7-alpha-hydroxysteroi 96.9 0.047 1E-06 47.1 14.3 116 27-146 10-146 (255)
348 PRK06949 short chain dehydroge 96.9 0.0084 1.8E-07 51.7 9.5 35 27-63 8-42 (258)
349 PRK14874 aspartate-semialdehyd 96.9 0.0061 1.3E-07 55.8 8.9 72 28-106 1-73 (334)
350 PRK07677 short chain dehydroge 96.9 0.038 8.1E-07 47.6 13.5 113 29-145 2-137 (252)
351 PRK07985 oxidoreductase; Provi 96.8 0.014 3.1E-07 52.0 11.1 116 27-146 48-186 (294)
352 cd01065 NAD_bind_Shikimate_DH 96.8 0.0042 9.1E-08 49.7 7.0 74 27-108 18-93 (155)
353 PRK05479 ketol-acid reductoiso 96.8 0.0081 1.8E-07 54.9 9.5 66 27-104 16-81 (330)
354 PF00899 ThiF: ThiF family; I 96.8 0.002 4.3E-08 50.9 4.9 34 28-63 2-35 (135)
355 PRK07035 short chain dehydroge 96.8 0.015 3.1E-07 50.1 10.8 34 28-63 8-41 (252)
356 PRK08063 enoyl-(acyl carrier p 96.8 0.037 8.1E-07 47.4 13.3 115 28-146 4-141 (250)
357 PRK08339 short chain dehydroge 96.8 0.049 1.1E-06 47.5 14.2 115 28-146 8-144 (263)
358 PLN02350 phosphogluconate dehy 96.8 0.0071 1.5E-07 58.2 9.4 96 27-146 5-108 (493)
359 PLN03139 formate dehydrogenase 96.8 0.0079 1.7E-07 56.1 9.5 100 25-149 196-297 (386)
360 PRK06953 short chain dehydroge 96.8 0.016 3.4E-07 49.1 10.6 113 29-146 2-130 (222)
361 PRK08589 short chain dehydroge 96.8 0.029 6.3E-07 49.2 12.6 115 27-147 5-142 (272)
362 PRK09134 short chain dehydroge 96.8 0.0081 1.8E-07 52.0 8.9 114 28-145 9-145 (258)
363 PRK08703 short chain dehydroge 96.8 0.049 1.1E-06 46.5 13.6 36 27-64 5-40 (239)
364 PRK05872 short chain dehydroge 96.8 0.029 6.3E-07 50.0 12.6 115 27-146 8-143 (296)
365 PRK08628 short chain dehydroge 96.8 0.035 7.7E-07 47.9 12.8 115 27-145 6-139 (258)
366 PRK06171 sorbitol-6-phosphate 96.8 0.0025 5.5E-08 55.4 5.6 36 27-64 8-43 (266)
367 PRK08220 2,3-dihydroxybenzoate 96.8 0.018 3.9E-07 49.4 10.8 36 27-64 7-42 (252)
368 TIGR03325 BphB_TodD cis-2,3-di 96.8 0.022 4.8E-07 49.4 11.5 36 27-64 4-39 (262)
369 PLN02712 arogenate dehydrogena 96.8 0.0084 1.8E-07 59.8 9.8 65 27-104 368-433 (667)
370 PRK08324 short chain dehydroge 96.8 0.023 4.9E-07 56.9 12.9 115 27-146 421-558 (681)
371 PRK09009 C factor cell-cell si 96.8 0.055 1.2E-06 46.0 13.7 72 29-108 1-79 (235)
372 PRK06139 short chain dehydroge 96.7 0.014 3E-07 53.2 10.4 115 27-146 6-143 (330)
373 PRK08177 short chain dehydroge 96.7 0.0048 1E-07 52.4 6.9 34 29-64 2-35 (225)
374 PLN02928 oxidoreductase family 96.7 0.0056 1.2E-07 56.3 7.7 105 25-145 156-262 (347)
375 PRK12743 oxidoreductase; Provi 96.7 0.049 1.1E-06 47.1 13.3 114 29-146 3-140 (256)
376 PRK07775 short chain dehydroge 96.7 0.037 8E-07 48.5 12.7 35 27-63 9-43 (274)
377 cd05311 NAD_bind_2_malic_enz N 96.7 0.0032 6.8E-08 54.5 5.7 99 27-150 24-133 (226)
378 PRK13304 L-aspartate dehydroge 96.7 0.0085 1.8E-07 53.0 8.6 69 28-105 1-70 (265)
379 TIGR01692 HIBADH 3-hydroxyisob 96.7 0.0068 1.5E-07 54.1 8.0 61 33-105 1-61 (288)
380 KOG1201 Hydroxysteroid 17-beta 96.7 0.041 8.8E-07 49.3 12.7 114 27-146 37-173 (300)
381 PRK08936 glucose-1-dehydrogena 96.7 0.04 8.7E-07 47.7 12.7 116 27-146 6-145 (261)
382 PRK07109 short chain dehydroge 96.7 0.043 9.3E-07 50.0 13.3 115 27-146 7-144 (334)
383 PRK06114 short chain dehydroge 96.7 0.015 3.2E-07 50.3 9.8 35 27-63 7-41 (254)
384 PRK07578 short chain dehydroge 96.7 0.0064 1.4E-07 50.6 7.2 104 29-145 1-111 (199)
385 COG0002 ArgC Acetylglutamate s 96.7 0.0042 9E-08 56.7 6.3 74 28-104 2-78 (349)
386 PRK12475 thiamine/molybdopteri 96.7 0.0037 8.1E-08 57.3 6.1 35 27-63 23-57 (338)
387 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.0079 1.7E-07 54.4 8.2 100 27-150 177-278 (311)
388 COG0111 SerA Phosphoglycerate 96.7 0.0055 1.2E-07 55.9 7.2 71 21-104 135-205 (324)
389 PRK05671 aspartate-semialdehyd 96.7 0.0033 7.2E-08 57.6 5.8 72 27-105 3-75 (336)
390 PRK00421 murC UDP-N-acetylmura 96.7 0.018 4E-07 54.7 11.0 125 27-163 6-133 (461)
391 PRK07792 fabG 3-ketoacyl-(acyl 96.7 0.021 4.5E-07 51.2 10.8 78 27-108 11-101 (306)
392 PRK06940 short chain dehydroge 96.6 0.033 7.2E-07 49.0 11.8 111 30-147 4-127 (275)
393 PRK06718 precorrin-2 dehydroge 96.6 0.021 4.5E-07 48.5 10.1 70 27-104 9-78 (202)
394 PRK13581 D-3-phosphoglycerate 96.6 0.0072 1.6E-07 58.7 7.9 99 24-149 136-236 (526)
395 PRK07688 thiamine/molybdopteri 96.6 0.0073 1.6E-07 55.4 7.5 35 27-63 23-57 (339)
396 PF02826 2-Hacid_dh_C: D-isome 96.6 0.0044 9.6E-08 51.4 5.5 100 20-146 28-128 (178)
397 PRK06947 glucose-1-dehydrogena 96.6 0.019 4.2E-07 49.1 9.7 32 29-62 3-34 (248)
398 COG1052 LdhA Lactate dehydroge 96.6 0.012 2.6E-07 53.7 8.7 99 25-150 143-243 (324)
399 TIGR02853 spore_dpaA dipicolin 96.6 0.0069 1.5E-07 54.3 7.1 68 27-104 150-217 (287)
400 PRK08862 short chain dehydroge 96.6 0.14 3E-06 43.9 15.0 115 28-146 5-144 (227)
401 PRK14106 murD UDP-N-acetylmura 96.6 0.015 3.2E-07 55.0 9.6 126 27-163 4-134 (450)
402 PRK03562 glutathione-regulated 96.5 0.02 4.3E-07 56.8 10.7 138 28-197 400-542 (621)
403 PF03435 Saccharop_dh: Sacchar 96.5 0.0014 3.1E-08 60.7 2.5 72 31-107 1-78 (386)
404 PRK06550 fabG 3-ketoacyl-(acyl 96.5 0.01 2.2E-07 50.5 7.5 107 29-146 6-127 (235)
405 cd01483 E1_enzyme_family Super 96.5 0.022 4.7E-07 45.3 9.0 32 30-63 1-32 (143)
406 PRK08306 dipicolinate synthase 96.5 0.012 2.5E-07 53.1 8.1 68 27-104 151-218 (296)
407 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.057 1.2E-06 46.1 12.0 35 28-64 5-39 (253)
408 TIGR01829 AcAcCoA_reduct aceto 96.5 0.048 1E-06 46.3 11.5 113 30-147 2-138 (242)
409 TIGR00465 ilvC ketol-acid redu 96.5 0.017 3.8E-07 52.4 9.1 65 28-104 3-67 (314)
410 PRK07201 short chain dehydroge 96.5 0.029 6.2E-07 55.4 11.4 116 26-146 369-509 (657)
411 PRK00141 murD UDP-N-acetylmura 96.5 0.02 4.3E-07 54.8 9.9 135 14-163 5-147 (473)
412 PRK05786 fabG 3-ketoacyl-(acyl 96.5 0.044 9.4E-07 46.6 11.2 35 28-64 5-39 (238)
413 PLN02383 aspartate semialdehyd 96.5 0.0056 1.2E-07 56.3 5.8 74 26-106 5-79 (344)
414 PRK06200 2,3-dihydroxy-2,3-dih 96.5 0.036 7.9E-07 48.0 10.8 36 27-64 5-40 (263)
415 PRK12938 acetyacetyl-CoA reduc 96.5 0.056 1.2E-06 46.2 11.8 31 29-61 4-34 (246)
416 PTZ00075 Adenosylhomocysteinas 96.4 0.013 2.8E-07 56.0 8.2 92 26-147 252-343 (476)
417 PRK00436 argC N-acetyl-gamma-g 96.4 0.022 4.8E-07 52.3 9.6 33 28-61 2-35 (343)
418 PRK08040 putative semialdehyde 96.4 0.0054 1.2E-07 56.2 5.5 73 26-105 2-75 (336)
419 COG0771 MurD UDP-N-acetylmuram 96.4 0.019 4.2E-07 54.4 9.2 126 28-163 7-136 (448)
420 smart00859 Semialdhyde_dh Semi 96.4 0.035 7.5E-07 42.8 9.2 100 30-149 1-103 (122)
421 PRK06125 short chain dehydroge 96.4 0.11 2.3E-06 44.9 13.3 116 27-146 6-140 (259)
422 PRK08261 fabG 3-ketoacyl-(acyl 96.4 0.039 8.4E-07 52.1 11.2 117 28-146 210-343 (450)
423 KOG0409 Predicted dehydrogenas 96.4 0.011 2.3E-07 53.0 6.8 68 28-107 35-102 (327)
424 TIGR02355 moeB molybdopterin s 96.4 0.013 2.7E-07 51.3 7.2 35 27-63 23-57 (240)
425 PF07993 NAD_binding_4: Male s 96.4 0.012 2.7E-07 51.1 7.2 111 33-145 1-134 (249)
426 PRK00048 dihydrodipicolinate r 96.4 0.037 8.1E-07 48.7 10.3 67 28-104 1-68 (257)
427 PRK06728 aspartate-semialdehyd 96.4 0.0059 1.3E-07 56.1 5.3 72 27-105 4-77 (347)
428 PRK13529 malate dehydrogenase; 96.4 0.011 2.5E-07 57.2 7.5 110 23-149 290-421 (563)
429 PRK06123 short chain dehydroge 96.3 0.049 1.1E-06 46.5 10.8 32 30-63 4-35 (248)
430 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.012 2.6E-07 49.7 6.6 77 25-107 59-137 (197)
431 TIGR00518 alaDH alanine dehydr 96.3 0.017 3.8E-07 53.6 8.4 75 27-107 166-241 (370)
432 TIGR01470 cysG_Nterm siroheme 96.3 0.051 1.1E-06 46.3 10.6 70 28-105 9-78 (205)
433 PRK05690 molybdopterin biosynt 96.3 0.013 2.8E-07 51.3 7.1 35 27-63 31-65 (245)
434 TIGR02371 ala_DH_arch alanine 96.3 0.0089 1.9E-07 54.5 6.2 90 8-104 109-200 (325)
435 PRK08017 oxidoreductase; Provi 96.3 0.04 8.8E-07 47.3 10.0 32 30-63 4-35 (256)
436 cd00401 AdoHcyase S-adenosyl-L 96.3 0.025 5.5E-07 53.2 9.2 90 27-147 201-291 (413)
437 PRK15438 erythronate-4-phospha 96.3 0.0095 2E-07 55.5 6.3 63 26-105 114-176 (378)
438 PRK06436 glycerate dehydrogena 96.3 0.012 2.6E-07 53.1 6.8 96 25-150 119-216 (303)
439 PRK07340 ornithine cyclodeamin 96.3 0.0086 1.9E-07 54.1 5.8 92 5-105 103-197 (304)
440 PF02882 THF_DHG_CYH_C: Tetrah 96.2 0.016 3.5E-07 47.5 6.8 57 26-107 34-90 (160)
441 PRK08416 7-alpha-hydroxysteroi 96.2 0.21 4.6E-06 43.2 14.4 34 27-62 7-40 (260)
442 cd00757 ThiF_MoeB_HesA_family 96.2 0.0069 1.5E-07 52.3 4.8 35 27-63 20-54 (228)
443 PRK14194 bifunctional 5,10-met 96.2 0.013 2.7E-07 52.9 6.4 56 27-107 158-213 (301)
444 PLN03129 NADP-dependent malic 96.2 0.014 3E-07 56.8 7.2 107 23-148 316-439 (581)
445 PRK08223 hypothetical protein; 96.2 0.011 2.5E-07 52.8 6.0 35 27-63 26-60 (287)
446 PRK06407 ornithine cyclodeamin 96.2 0.01 2.2E-07 53.6 5.8 94 4-104 95-190 (301)
447 TIGR01082 murC UDP-N-acetylmur 96.2 0.037 7.9E-07 52.5 9.8 125 30-167 1-128 (448)
448 PRK15409 bifunctional glyoxyla 96.2 0.026 5.7E-07 51.4 8.4 95 25-146 142-237 (323)
449 PRK09496 trkA potassium transp 96.1 0.024 5.3E-07 53.4 8.5 68 29-104 1-73 (453)
450 PRK05476 S-adenosyl-L-homocyst 96.1 0.032 7E-07 52.7 9.1 91 27-147 211-301 (425)
451 PRK06719 precorrin-2 dehydroge 96.1 0.021 4.5E-07 46.6 6.9 67 27-104 12-78 (157)
452 PRK00257 erythronate-4-phospha 96.1 0.011 2.4E-07 55.1 5.9 62 27-105 115-176 (381)
453 PLN02306 hydroxypyruvate reduc 96.1 0.036 7.8E-07 51.8 9.3 104 25-145 162-272 (386)
454 TIGR01035 hemA glutamyl-tRNA r 96.1 0.016 3.5E-07 54.6 7.0 101 27-150 179-282 (417)
455 PRK06483 dihydromonapterin red 96.1 0.055 1.2E-06 46.1 9.8 34 29-64 3-36 (236)
456 PRK06484 short chain dehydroge 96.1 0.024 5.2E-07 54.4 8.3 117 28-148 269-403 (520)
457 TIGR00936 ahcY adenosylhomocys 96.1 0.041 9E-07 51.7 9.5 66 27-105 194-259 (406)
458 PF02423 OCD_Mu_crystall: Orni 96.1 0.0068 1.5E-07 55.0 4.2 90 6-103 107-199 (313)
459 TIGR02685 pter_reduc_Leis pter 96.1 0.13 2.8E-06 44.8 12.2 32 29-62 2-33 (267)
460 PRK08291 ectoine utilization p 96.1 0.019 4.1E-07 52.4 7.1 74 27-105 131-206 (330)
461 PRK05599 hypothetical protein; 96.0 0.29 6.2E-06 42.2 14.2 117 29-149 1-140 (246)
462 PRK12748 3-ketoacyl-(acyl-carr 96.0 0.22 4.7E-06 43.0 13.3 34 28-63 5-40 (256)
463 PRK08618 ornithine cyclodeamin 96.0 0.014 3.1E-07 53.1 6.0 73 27-104 126-200 (325)
464 PRK01710 murD UDP-N-acetylmura 96.0 0.042 9.2E-07 52.3 9.5 124 29-163 15-143 (458)
465 PRK01438 murD UDP-N-acetylmura 96.0 0.083 1.8E-06 50.4 11.5 127 27-163 15-148 (480)
466 COG0702 Predicted nucleoside-d 96.0 0.034 7.4E-07 48.1 8.1 74 29-107 1-74 (275)
467 PRK08410 2-hydroxyacid dehydro 96.0 0.026 5.6E-07 51.2 7.5 94 26-149 143-238 (311)
468 cd01080 NAD_bind_m-THF_DH_Cycl 96.0 0.017 3.7E-07 47.7 5.8 55 27-107 43-98 (168)
469 PRK09424 pntA NAD(P) transhydr 96.0 0.097 2.1E-06 50.6 11.7 107 26-147 163-287 (509)
470 PRK06932 glycerate dehydrogena 96.0 0.02 4.3E-07 52.0 6.7 91 25-146 144-234 (314)
471 PRK07041 short chain dehydroge 96.0 0.07 1.5E-06 45.1 9.7 107 33-145 2-123 (230)
472 PTZ00317 NADP-dependent malic 95.9 0.021 4.6E-07 55.3 7.1 107 24-148 293-419 (559)
473 PRK07877 hypothetical protein; 95.9 0.025 5.3E-07 56.9 7.8 76 27-104 106-204 (722)
474 TIGR01831 fabG_rel 3-oxoacyl-( 95.9 0.059 1.3E-06 45.8 9.3 114 31-148 1-138 (239)
475 PRK06141 ornithine cyclodeamin 95.9 0.017 3.8E-07 52.3 6.2 91 6-104 104-197 (314)
476 PRK04308 murD UDP-N-acetylmura 95.9 0.046 9.9E-07 51.7 9.3 128 28-163 5-136 (445)
477 PRK02006 murD UDP-N-acetylmura 95.9 0.16 3.4E-06 48.9 13.1 75 28-108 7-81 (498)
478 PRK02705 murD UDP-N-acetylmura 95.9 0.061 1.3E-06 50.9 10.1 125 30-163 2-135 (459)
479 PRK09730 putative NAD(P)-bindi 95.9 0.078 1.7E-06 45.1 9.9 30 29-60 2-31 (247)
480 PRK06484 short chain dehydroge 95.9 0.031 6.8E-07 53.6 8.1 34 28-63 5-38 (520)
481 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.032 6.9E-07 44.7 6.6 57 26-107 26-82 (140)
482 PRK07589 ornithine cyclodeamin 95.8 0.019 4.2E-07 52.8 6.1 91 7-104 109-201 (346)
483 PRK06823 ornithine cyclodeamin 95.8 0.026 5.6E-07 51.3 6.7 93 5-104 106-200 (315)
484 TIGR01296 asd_B aspartate-semi 95.8 0.013 2.8E-07 53.8 4.7 70 30-106 1-71 (339)
485 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.074 1.6E-06 45.0 8.9 35 27-63 20-54 (197)
486 PF07991 IlvN: Acetohydroxy ac 95.8 0.14 3E-06 42.1 10.1 65 28-104 4-68 (165)
487 PRK12557 H(2)-dependent methyl 95.8 0.096 2.1E-06 48.2 10.3 56 40-104 31-89 (342)
488 PRK06901 aspartate-semialdehyd 95.7 0.033 7.1E-07 50.6 7.0 69 28-105 3-73 (322)
489 PLN02494 adenosylhomocysteinas 95.7 0.047 1E-06 52.1 8.2 90 27-147 253-343 (477)
490 PRK06487 glycerate dehydrogena 95.7 0.033 7.2E-07 50.6 7.0 89 25-145 145-233 (317)
491 PRK05562 precorrin-2 dehydroge 95.7 0.13 2.7E-06 44.5 10.2 76 21-104 18-93 (223)
492 COG1064 AdhP Zn-dependent alco 95.7 0.22 4.7E-06 45.7 12.2 125 28-183 167-297 (339)
493 PRK06079 enoyl-(acyl carrier p 95.7 0.035 7.7E-07 48.1 6.9 35 27-63 6-42 (252)
494 TIGR03443 alpha_am_amid L-amin 95.7 0.12 2.5E-06 55.6 12.1 114 27-141 970-1105(1389)
495 PRK14179 bifunctional 5,10-met 95.7 0.028 6.1E-07 50.3 6.2 56 27-107 157-212 (284)
496 PRK02472 murD UDP-N-acetylmura 95.7 0.093 2E-06 49.5 10.2 125 28-163 5-134 (447)
497 PRK00045 hemA glutamyl-tRNA re 95.6 0.034 7.4E-07 52.5 7.1 102 27-150 181-285 (423)
498 PRK05600 thiamine biosynthesis 95.6 0.038 8.1E-07 51.4 7.2 35 27-63 40-74 (370)
499 PLN02858 fructose-bisphosphate 95.6 0.063 1.4E-06 57.8 9.7 96 24-146 320-419 (1378)
500 PRK13303 L-aspartate dehydroge 95.6 0.12 2.6E-06 45.7 10.1 69 28-105 1-70 (265)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.1e-57 Score=403.60 Aligned_cols=228 Identities=71% Similarity=1.080 Sum_probs=207.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|||+|||++|+||+++|+.|+.+++++|++|+|+++++|+++||+|+..+.+++...+++|++++++|||+||+|||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999998899999999999999999999999999789999999998754455543234566789999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHH
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK 188 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~ 188 (256)
+||++|.|++..|.++++++++.|++++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998988777777999999999999999999999999
Q ss_pred cCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 189 l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
+|++|++|+++|||||||++|||+||++.+...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus 161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a 228 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMA 228 (310)
T ss_pred hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHH
Confidence 99999999999999995569999999998854566677899999999999999999877788888764
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.7e-55 Score=395.88 Aligned_cols=227 Identities=65% Similarity=0.997 Sum_probs=204.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK 109 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~ 109 (256)
||+||||+|+||+++|+.|+.+++++|++|+|++++.|+++||+|...+.+++.+.+.++++++++|||+||++||.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999988999999999999999999999999998889999999977443454322233457899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHc
Q 025206 110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189 (256)
Q Consensus 110 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l 189 (256)
+|++|.|++..|.+++++++++|.+++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988777779999999998899999999999999
Q ss_pred CCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 190 NVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 190 ~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
+++|++|+++||||||+++|||+||++++...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia 227 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMA 227 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHH
Confidence 9999999999999998779999999998643466667899999999999999999767778877764
No 3
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=5.1e-52 Score=374.77 Aligned_cols=229 Identities=79% Similarity=1.168 Sum_probs=208.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
+.||+||||+|+||+++++.|+.+++++|++|+|++++.++++||.|+.....+..+.+++|++++++|||+||++||.|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 45999999889999999999999999999999999988899999999887555654445667889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHH
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAG 187 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~ 187 (256)
+++|++|.|++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+|+||+|.||++||++++|+
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~ 177 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAE 177 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888777777799999999999999999999999
Q ss_pred HcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 188 ~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
++|+++.+|+++|+|||||++|||+||++.+...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus 178 ~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a 246 (323)
T PLN00106 178 KKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA 246 (323)
T ss_pred HhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence 999999999999999998889999999998754466677899999999999999999766777877754
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.7e-52 Score=372.99 Aligned_cols=218 Identities=44% Similarity=0.654 Sum_probs=191.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+||+|||| |+||+++++.|+.+++.+|++|||++ .++|.++||.|+.+.. ..++.. +.+ +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence 59999999 99999999999888887899999999 4799999999987643 344332 234 57899999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~ 183 (256)
|.||+|||+|.|++..|++|+++++++|.+++||++++++|||+|+|||+ +++.+| +|++||||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~---~~k~sg-~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYI---AMKFSG-FPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHH---HHHhcC-CCccceecccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975554 355555 999999999 8999999999
Q ss_pred HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-------CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (256)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~ 255 (256)
+||++++++|++|+++|+|||| ++|||+||++++++ + .+++++++|.++||++|++|+++| |++ ++||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHG-dt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHG-DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCC-CceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 9999999999999999999996 69999999999863 2 223567899999999999999999 555 77776
Q ss_pred C
Q 025206 256 A 256 (256)
Q Consensus 256 ~ 256 (256)
|
T Consensus 231 A 231 (313)
T COG0039 231 A 231 (313)
T ss_pred H
Confidence 4
No 5
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-51 Score=355.52 Aligned_cols=251 Identities=70% Similarity=1.031 Sum_probs=234.7
Q ss_pred hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE
Q 025206 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY 84 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~ 84 (256)
.+++-+.+. ....|.|.....+..||+|+||+|-||+++..+|.++++++++.|||+....|.+.||.|..++..+..|
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~ 84 (345)
T KOG1494|consen 6 LIRSSASLS-SGPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGF 84 (345)
T ss_pred HHHhhhhhc-cCCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceecc
Confidence 344433333 3445668888888899999999999999999999999999999999999889999999999998889999
Q ss_pred ecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCC
Q 025206 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (256)
Q Consensus 85 ~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~ 164 (256)
.+...+++++++||+|||-||.||+|||+|.|++..|+.|+++++..+.++||++.+.++|||+++++||+++++++.|.
T Consensus 85 ~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ 164 (345)
T KOG1494|consen 85 TGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGV 164 (345)
T ss_pred CChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeechHHHHHHHHHHHcCCCC-CceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHh
Q 025206 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243 (256)
Q Consensus 165 ~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~ 243 (256)
|+|+|++|+|.||..|.+.++++.++++| ++++++|+|+|.|.|++|++|+..+...+++++++.++.+++++|.||.+
T Consensus 165 ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~ 244 (345)
T KOG1494|consen 165 YDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVK 244 (345)
T ss_pred CCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999 55999999999999999999999986668899999999999999999999
Q ss_pred hcCCCcceecccC
Q 025206 244 AKAGKGSATLSMA 256 (256)
Q Consensus 244 ~k~~~~s~~~s~~ 256 (256)
.|.|.||++||||
T Consensus 245 AKaGaGSATLSMA 257 (345)
T KOG1494|consen 245 AKAGAGSATLSMA 257 (345)
T ss_pred eccCCCchhhhHH
Confidence 9999999999997
No 6
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-50 Score=364.36 Aligned_cols=229 Identities=62% Similarity=0.944 Sum_probs=199.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.++.||+|||++|+||+++++.|+.+++.+|++|+|++++.++++||.|......+...+...+++++++|||+||+++|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 35669999998899999999999999999999999997788999999997754334433211344689999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l 185 (256)
.|++++++|.+++..|++++++++++|++++|+++++++|||+|.|+++....+++.+++||+||||++.|||+||+++|
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877765422234455999999999889999999999
Q ss_pred HHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
|++++++|++|+++||||||++++||+||++ +.+++++++++|.++++++|++|+++|+|+++++++.|
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a 234 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMA 234 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Confidence 9999999999999999999754899999999 55677777999999999999999999987788888764
No 7
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.3e-50 Score=345.87 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=187.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
+..||+|+|+ |.||++.|+.++.+++.+|++|+|.+ +++|+.|||+|.... ..-++.. ..| +.+.+++++||+|
T Consensus 19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~-~~D-y~~sa~S~lvIiT 95 (332)
T KOG1495|consen 19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA-SKD-YSVSANSKLVIIT 95 (332)
T ss_pred cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe-cCc-ccccCCCcEEEEe
Confidence 3569999998 99999999999999999999999998 489999999998742 2222222 335 4678999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK 182 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~ 182 (256)
||..+++|++|++++++|+.+++.+++++.+|.||++++++|||+|+|||+ .|+.+| ||++||||. |+|||+|||
T Consensus 96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv---~wKLSg-fP~nRViGsGcnLDsaRFr 171 (332)
T KOG1495|consen 96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYV---TWKLSG-FPKNRVIGSGCNLDSARFR 171 (332)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHH---HHHHcC-CcccceeccCcCccHHHHH
Confidence 999999999999999999999999999999999999999999999965443 355555 999999999 899999999
Q ss_pred HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC------------CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
++++++||++|+++++||+||||+ +-||.||.+.+.+ ..+++.|+++.++|.+.+||||+.||
T Consensus 172 yLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKG 246 (332)
T KOG1495|consen 172 YLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKG 246 (332)
T ss_pred HHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999975 7799999998742 25678899999999999999999995
No 8
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.4e-50 Score=362.32 Aligned_cols=208 Identities=28% Similarity=0.406 Sum_probs=183.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-C--CcEEEEecCCccccccCCCCEEEEec
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~--~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
||+|||+ |+||+++|+.|+.+++++|++|+|+++ ++|+++||.|... . ..++++.+ + +++++|||+||+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~--~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG--D-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC--C-HHHhCCCCEEEECC
Confidence 7999998 999999999999999999999999983 7899999999653 2 24555532 4 57999999999999
Q ss_pred CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206 105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (256)
Q Consensus 105 g~~~~~g~~--r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~ 181 (256)
|.|++||++ |.|++..|++++++++++|.+++|++++|++|||+|+|+++ +++.+| ||++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~---~~k~sg-~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYI---AATEFD-YPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHH---HHHHhC-cChhheecccchHHHHHH
Confidence 999999998 69999999999999999999999999999999999975543 455555 999999999 89999999
Q ss_pred HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC---------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL---------ADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~---------~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
+++||+++|++|++|+++|||||| +++||+||++++++ ++ +++++++|.++++++|++|+++||
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG 226 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHG-SHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKG 226 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCC-CceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999996 59999999999853 21 222478999999999999999984
No 9
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=3e-49 Score=356.37 Aligned_cols=226 Identities=61% Similarity=0.938 Sum_probs=198.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
|||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......++.. ..++++++++|+|+||+|+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999999865 56677999999874 56778999985322234321 134667899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHH
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la 186 (256)
+++++++|.|++..|++++++++++|++++|+++++++|||+|+|++++++.+++.+++|++||||+|.|||+|++++||
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887776666669999999999999999999999
Q ss_pred HHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 187 ~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
+++|++|++|+++||||||++++||+||++ .+.+++++++++|.++++++|++|+++|+|++++++|.|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a 228 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG 228 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHH
Confidence 999999999999999999888999999999 555677777999999999999999999977778888764
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=5.9e-49 Score=355.27 Aligned_cols=215 Identities=33% Similarity=0.434 Sum_probs=186.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~ 95 (256)
+|.||+||||+|+||+++++.|+.+++++ |++|+|+++ ++|+++||+|+..+ ...++. . +.+++++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--T-DPEEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--c-ChHHHhC
Confidence 67899999988999999999999999999 999999952 79999999998732 223332 2 3368999
Q ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t 174 (256)
|||+||++||.|+++|++|.|++..|++++++++++|++++| ++++|++|||+|+||++ +++.+.+||++||||+|
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~k~s~g~p~~rViG~t 155 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALI---ASKNAPDIPPKNFSAMT 155 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEee
Confidence 999999999999999999999999999999999999999998 99999999999975554 45555159999999999
Q ss_pred echHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhhcC
Q 025206 175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k~ 246 (256)
.|||+||+++||+++|++|++|+ .+|||||| ++++|+||++++++ + ++++. +++|.++++++|++|+++||
T Consensus 156 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG 234 (323)
T TIGR01759 156 RLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARG 234 (323)
T ss_pred HHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccC
Confidence 99999999999999999999996 56999997 59999999999853 2 23332 68999999999999999995
Q ss_pred CC
Q 025206 247 GK 248 (256)
Q Consensus 247 ~~ 248 (256)
++
T Consensus 235 ~t 236 (323)
T TIGR01759 235 AS 236 (323)
T ss_pred Cc
Confidence 43
No 11
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.6e-49 Score=352.82 Aligned_cols=211 Identities=27% Similarity=0.389 Sum_probs=184.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.+||+|||+ |+||+++++.|+.+++.+|++|+|+++ +.|+++||+|+.. .....+. .++|+ ++++|||+||++|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence 469999998 999999999999999999999999984 7899999999873 2212332 23454 5799999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~ 183 (256)
|.|+++|++|.|++..|+++++++++.|++++|++++|++|||+|.| ++++++.+++|++||||+ |.||++|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~----t~~~~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIM----TYVAWKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHH----HHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 444444445999999999 8999999999
Q ss_pred HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
++|+++++++++|+++|||||| +++||+||++++++ + .+++++++|.++++++|++|+++||
T Consensus 156 ~la~~l~v~~~~v~~~v~GeHG-~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEHG-DSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHhCCChhhEEEEEeecCC-CCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999996 69999999999863 1 1234578999999999999999884
No 12
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-48 Score=351.40 Aligned_cols=215 Identities=29% Similarity=0.407 Sum_probs=187.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC----CchhHHHHHhcccCC--CcEEEEecCCcccccc
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA----NTPGVAADVGHINTR--SEVAGYMGNDQLGQAL 94 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~----~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal 94 (256)
.+|+||+||||+|+||+++++.|+..++++ |++|+|++ +++|+++||+|+.++ ..+.+. + +.++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~-~~y~~~ 78 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--D-DPNVAF 78 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--c-ChHHHh
Confidence 467899999988999999999999999998 99999995 268999999998732 234432 2 336899
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
+|||+||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||++ +++.+|+||++||||+
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~k~s~g~p~~rViG~ 155 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALI---AMKNAPDLPAENFTAM 155 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHH---HHHHcCCCCHHHEEee
Confidence 999999999999999999999999999999999999999988 799999999999976554 4566646999999999
Q ss_pred eechHHHHHHHHHHHcCCCCCceeEE-EEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhhc
Q 025206 174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAK 245 (256)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k 245 (256)
|.||++||+++||++++++|++|+++ |||||| +++||+||++++++ + +++++ +++|.++++++|++|+++|
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 234 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR 234 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence 99999999999999999999999986 599997 59999999999963 2 23322 6799999999999999999
Q ss_pred CC
Q 025206 246 AG 247 (256)
Q Consensus 246 ~~ 247 (256)
|.
T Consensus 235 G~ 236 (326)
T PRK05442 235 GA 236 (326)
T ss_pred CC
Confidence 53
No 13
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.7e-48 Score=352.41 Aligned_cols=210 Identities=26% Similarity=0.444 Sum_probs=185.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||+|||+ |.||+++++.|+.+++++|++|+|+++ ++|+++||+|+.. ....++.. +.+ +++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCC
Confidence 69999998 999999999999999999999999984 7899999999863 22234332 335 467999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~ 184 (256)
.|+++|++|.|++..|+++++++++.|+++||++++|++|||+|+|+++ +++.+| +|++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~---~~k~sg-~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYV---AWKLSG-FPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHH---HHHHhC-CCHHHEEeecchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975443 456666 999999999 69999999999
Q ss_pred HHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
||+++|+++++|+++|||||| +++||+||++++++ + +++++++++.++++++|++|++.||
T Consensus 191 lA~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG 263 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHG-DSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKG 263 (350)
T ss_pred HHHHhCCCccceeeeEEecCC-CceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999997 69999999998842 1 3446688999999999999999884
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.4e-47 Score=343.53 Aligned_cols=205 Identities=28% Similarity=0.431 Sum_probs=179.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|||+ |+||+++++.|+.+++++||+|+|+++ ++|+++||+|+... ..+++.. .+ +++++|||+||++||.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence 6898 999999999999999999999999983 79999999998743 2344432 33 579999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHH
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG 187 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~ 187 (256)
+||++|.|++..|++++++++++|++++|++++|++|||+|+|+ +++++.+++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t----~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILT----YVAWKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH----HHHHHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999644 34434445999999999 79999999999999
Q ss_pred HcCCCCCceeEEEEeCCCCCceeecccccccCC-CC----------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 188 ~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~----------~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
+++++|++|+++|||||| +++||+||++++++ ++ +++++++|.++++++|++|++.||
T Consensus 153 ~l~v~~~~V~~~v~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG 221 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHG-DSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKG 221 (299)
T ss_pred HhCcCcCeEEEEEEecCC-CceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999996 69999999999853 21 123467999999999999999884
No 15
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-47 Score=344.90 Aligned_cols=212 Identities=33% Similarity=0.440 Sum_probs=183.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccCCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD 98 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aD 98 (256)
||+||||+|+||+++++.|+++++++ +++|+|+++ ++++++||.|+.++ ....+. .+.+++++|||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCCC
Confidence 89999999999999999999999888 499999975 68899999998532 223332 23468999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206 99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177 (256)
Q Consensus 99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld 177 (256)
+||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+|+++ +++.+|.+|++||||+|.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~vig~t~LD 155 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI---ALKNAPNLPPKNFTALTRLD 155 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEeeHHH
Confidence 99999999999999999999999999999999999996 999999999999975543 45656535999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C--------CCHH-HHHHHHHHHHhhHHHHHhhcC
Q 025206 178 VVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N--------LADE-DIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 178 s~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~--------~~~~-~~~~i~~~v~~~~~~i~~~k~ 246 (256)
|+|||++||++++++|++|+ ++||||||+ +++|+||++++++ + ++++ ..++|.++++++|++|+++||
T Consensus 156 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg 234 (323)
T cd00704 156 HNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRG 234 (323)
T ss_pred HHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccC
Confidence 99999999999999999995 689999975 9999999999853 1 3333 257899999999999999996
Q ss_pred CC
Q 025206 247 GK 248 (256)
Q Consensus 247 ~~ 248 (256)
+.
T Consensus 235 ~t 236 (323)
T cd00704 235 AS 236 (323)
T ss_pred cc
Confidence 44
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=4.8e-47 Score=353.08 Aligned_cols=215 Identities=29% Similarity=0.335 Sum_probs=185.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcC-------CCccEEEEEeCC--CchhHHHHHhcccCC--CcEEEEecCCcccccc
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIA--NTPGVAADVGHINTR--SEVAGYMGNDQLGQAL 94 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~-------~~~~eV~LiD~~--~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal 94 (256)
.++.||+|||++|+||+++++.|+.+ +++.||+|+|++ +++|+++||+|+.++ ..+.+. +.+ ++++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~ 174 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVF 174 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence 35789999998899999999999998 777799999998 479999999998732 234432 223 6899
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
+|||+||++||.|+++|++|.|++..|.+++++++++|++ ++|++++|++|||+|+|+++ +++.+| ++++|+||+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v---~~k~sg-~~~~rViGt 250 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI---CLKNAP-NIPAKNFHA 250 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH---HHHHcC-CCCcceEEe
Confidence 9999999999999999999999999999999999999999 58999999999999975543 455555 899999999
Q ss_pred -eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 025206 174 -TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA 244 (256)
Q Consensus 174 -t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~ 244 (256)
|.||++||+++||+++|+++++|+ ++|||||| ++|||+||++++++ + +++++ +++|.++++++|++|+++
T Consensus 251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred eccHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999995 69999997 59999999999953 2 22222 689999999999999999
Q ss_pred cCCC
Q 025206 245 KAGK 248 (256)
Q Consensus 245 k~~~ 248 (256)
||..
T Consensus 330 kG~t 333 (444)
T PLN00112 330 WGRS 333 (444)
T ss_pred cCch
Confidence 8643
No 17
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1e-46 Score=340.23 Aligned_cols=211 Identities=28% Similarity=0.450 Sum_probs=186.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
.++||+|||+ |.||+++++.|+.+++++||+|+|++ +++|+++||+|+... ..+.+.. .+ +++++|||+||++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVIT 80 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEEe
Confidence 3579999998 99999999999999999999999997 378999999998632 2445443 34 4689999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK 182 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~ 182 (256)
||.|++||++|.|++..|+++++++++.+++++|++++|++|||+|+|++ .+++.+| +|++||||+ |.||++|++
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~---~~~k~sg-~p~~~viG~gt~LDs~R~~ 156 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY---ATWKLSG-FPKERVIGSGTSLDSARFR 156 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH---HHHHHhC-CCHHHEeecCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999997544 3455555 999999999 689999999
Q ss_pred HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
+.+|+++|++|++|+++|||||| ++++|+||++++++ + +++++++++.++++++|++|++.||
T Consensus 157 ~~la~~l~v~~~~V~~~viGeHG-~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg 230 (315)
T PRK00066 157 YMLSEKLDVDPRSVHAYIIGEHG-DTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKG 230 (315)
T ss_pred HHHHHHhCCCcccEEEEEEecCC-CcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999996 59999999999853 1 3446688999999999999999984
No 18
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=8e-47 Score=346.88 Aligned_cols=217 Identities=29% Similarity=0.336 Sum_probs=184.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEE--eCC--CchhHHHHHhcccCC--CcEEEEecCCcccc
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIA--NTPGVAADVGHINTR--SEVAGYMGNDQLGQ 92 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~Li--D~~--~~~g~~~dl~~~~~~--~~v~~~~~t~d~~e 92 (256)
+..++.||+||||+|+||+++++.|+.+++++ +++|+ |++ +++|+++||+|+.++ ..+.+. +.+ ++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~ 116 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE 116 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence 34457899999988999999999999999988 56667 555 378999999998732 234432 223 68
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEE
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kvi 171 (256)
+++|||+||++||.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|+||++ +++.+| +||+|+|
T Consensus 117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v---~~k~sg-~~~~rvi 192 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALI---AMKNAP-NIPRKNF 192 (387)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHH---HHHHcC-CCcccEE
Confidence 99999999999999999999999999999999999999999987 999999999999975543 455555 8999999
Q ss_pred EE-eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-CC----CHHH--HHHHHHHHHhhHHHHH
Q 025206 172 GV-TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-NL----ADED--IKALTKRTQDGGTEVV 242 (256)
Q Consensus 172 G~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~~----~~~~--~~~i~~~v~~~~~~i~ 242 (256)
|+ |.||++||+++||++++++|++|+ ++|||||| ++|||+||++++++ ++ ++.+ +++|.++++++|++|+
T Consensus 193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi 271 (387)
T TIGR01757 193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI 271 (387)
T ss_pred EecchhHHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence 99 899999999999999999999995 99999997 59999999999853 22 2212 6899999999999999
Q ss_pred hhcCCC
Q 025206 243 EAKAGK 248 (256)
Q Consensus 243 ~~k~~~ 248 (256)
+.||.+
T Consensus 272 ~~KG~t 277 (387)
T TIGR01757 272 KKWGRS 277 (387)
T ss_pred hccCch
Confidence 998643
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-46 Score=340.40 Aligned_cols=214 Identities=28% Similarity=0.380 Sum_probs=186.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC--C--chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~ 95 (256)
+|+||+||||+|+||+++++.|+.+++++ ||+|+|++ . ++|+++||+|+..+ ..+++. + +.+++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--D-DPNVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--c-CcHHHhC
Confidence 47899999988999999999999999999 99999995 2 78999999998732 234443 2 3368999
Q ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t 174 (256)
|||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||++ +++.+|++|++||||+|
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~ViG~t 154 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI---AMKNAPDIPPDNFTAMT 154 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH---HHHHcCCCChHheEEeh
Confidence 99999999999999999999999999999999999999999 599999999999976554 45666569999999999
Q ss_pred echHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCC-C----CCHH--HHHHHHHHHHhhHHHHHhhcC
Q 025206 175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~--~~~~i~~~v~~~~~~i~~~k~ 246 (256)
.||++||++.+|+++|+++.+|++ +|||||| ++++|+||++++++ + +++. ++++|.++++++|++|+++||
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG 233 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARG 233 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcC
Confidence 999999999999999999999998 5699996 59999999998853 2 3333 267999999999999999995
Q ss_pred C
Q 025206 247 G 247 (256)
Q Consensus 247 ~ 247 (256)
.
T Consensus 234 ~ 234 (322)
T cd01338 234 A 234 (322)
T ss_pred C
Confidence 3
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=7.5e-46 Score=333.77 Aligned_cols=209 Identities=30% Similarity=0.431 Sum_probs=181.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+||+|||+ |.||+++++.|+..|+..+|+|+|++. +++.++||+|.... ....... .+ ++++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEcc
Confidence 38999998 999999999999999878999999983 68889999987632 2233332 23 35789999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~ 183 (256)
|.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|+| ++++++.+++|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~----~~~~~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI----TYVVQKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH----HHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 444444455999999999 7999999999
Q ss_pred HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
+||+++++++++|+++|||||| ++++|+||++++++ + +.+++++++.++++++|++|+++||
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg-~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg 224 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHG-DSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKG 224 (306)
T ss_pred HHHHHHCCCcccceEEEEecCC-CceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999996 59999999999853 2 2345688999999999999999884
No 21
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-45 Score=328.92 Aligned_cols=221 Identities=35% Similarity=0.596 Sum_probs=188.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEE
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVI 101 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVI 101 (256)
.+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.+.++|+.|..... ..++. .++|+ ++++|||+||
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence 35679999998 9999999999999997 6899999984 678899999875321 23332 24565 4899999999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHH
Q 025206 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR 180 (256)
Q Consensus 102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R 180 (256)
+++|.++++|++|.|++..|.++++++++.|+++||++++|++|||+|.+ ++++++.+++|++||+|+| .||++|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~----t~~~~~~s~~p~~rviG~gt~lds~R 154 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCM----VKVFQEKSGIPSNKICGMAGVLDSSR 154 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH----HHHHHHhhCCCcccEEEecchHHHHH
Confidence 99999999999999999999999999999999999999999999999964 3444444559999999996 899999
Q ss_pred HHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCCCcc
Q 025206 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGS 250 (256)
Q Consensus 181 ~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s 250 (256)
++++||++++++|++|+++|+|||| ++++|+||++++++ + +++++++++.++++++|++|++++ |+++
T Consensus 155 ~~~~la~~l~v~~~~v~~~viGeHg-~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~ 232 (319)
T PTZ00117 155 FRCNLAEKLGVSPGDVSAVVIGGHG-DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS 232 (319)
T ss_pred HHHHHHHHhCCCcccceEEEeecCC-CcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence 9999999999999999999999996 69999999998853 1 456668899999999999999986 5666
Q ss_pred eecccC
Q 025206 251 ATLSMA 256 (256)
Q Consensus 251 ~~~s~~ 256 (256)
+++|+|
T Consensus 233 t~~~~a 238 (319)
T PTZ00117 233 AFFAPA 238 (319)
T ss_pred hHHHHH
Confidence 766654
No 22
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3.6e-45 Score=328.99 Aligned_cols=215 Identities=34% Similarity=0.611 Sum_probs=184.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC----CcEEEEecCCccccccCCCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~----~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
|||+|||+ |.||+.+|+.++.+|+. +|+|+|+++ ..+.++|+.|.... .+++ .++|++ ++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~-~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYA-DTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHH-HhCCCCEEEE
Confidence 69999998 99999999999999987 899999984 46778888876531 2333 245654 5899999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHH
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA 181 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~ 181 (256)
++|.|+++|++|.|++..|++++++++++|.+++|++++|++|||+|.|+++ +++.+| +|++||||+| .|||+|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~---~~~~sg-~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYV---AWQKSG-FPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHHC-cCHHHEEEeccchHHHHH
Confidence 9999999999999999999999999999999999999999999999964433 355555 9999999995 8999999
Q ss_pred HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (256)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~ 255 (256)
++.||+++++++++|+++|||||| ++++|+||++++++ + ++++++++|.++++++|++|+++| |++++++++
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg-~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~ 228 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHG-DAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAP 228 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCC-CcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHH
Confidence 999999999999999999999996 59999999999863 2 345568999999999999999987 455666654
No 23
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=3.5e-45 Score=328.56 Aligned_cols=208 Identities=31% Similarity=0.484 Sum_probs=181.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
|+|||+ |+||+++++.|+.+++++||+|+|+++ +.+.++||+|.... ...++.. +++ +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 589998 999999999999999999999999984 78999999998754 2233332 334 46999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHH
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA 186 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la 186 (256)
+++|++|.|++.+|++++++++++|+++||++++|++|||+|+|++ .+++.+| +|++||||+ |.|||+|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~---~~~~~sg-~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTY---VAQKLSG-LPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHH---HHHHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996443 2345555 999999999 6999999999999
Q ss_pred HHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 187 ~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
+++++++++|+++|+|||| +++||+||++++++ ++ +++++++|.++++++|++|++.||
T Consensus 154 ~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg 219 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHG-DSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKG 219 (300)
T ss_pred HHhCCCcccEEEEEEeccC-CceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999996 58999999999853 22 335578999999999999999985
No 24
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-44 Score=326.90 Aligned_cols=222 Identities=35% Similarity=0.622 Sum_probs=188.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEE
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvV 100 (256)
+.+.+||+|||| |.||+++++.++..++ .+|+|+|+++ +.+.++|+.|... ....++. .++|+ ++++|||+|
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiV 78 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVV 78 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEE
Confidence 456679999998 9999999999999997 4699999984 5778999998642 2223333 24565 689999999
Q ss_pred EEecCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-
Q 025206 101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT- 174 (256)
Q Consensus 101 Ii~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t- 174 (256)
|+++|.|+++|+ +|.+++..|++++++++++|+++||++++|++|||+|+++ +++++.+++|++||||+|
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t----~~~~~~sg~p~~rviGlgt 154 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAG 154 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH----HHHHHhcCCChhhEEEecC
Confidence 999999999999 9999999999999999999999999999999999999643 343344459999999996
Q ss_pred echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhh
Q 025206 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEA 244 (256)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~ 244 (256)
.||++|+++.||+++++++++|+++|+|||| +++||+||++++++ + ++++++++|.++++++|++|+++
T Consensus 155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 233 (321)
T PTZ00082 155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHG-DKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL 233 (321)
T ss_pred cccHHHHHHHHHHHhCCCcccceeeEEecCC-CceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999996 69999999999853 1 45566889999999999999998
Q ss_pred cCCCcceecccC
Q 025206 245 KAGKGSATLSMA 256 (256)
Q Consensus 245 k~~~~s~~~s~~ 256 (256)
| |+++++++.|
T Consensus 234 ~-gkg~t~~~ia 244 (321)
T PTZ00082 234 L-GTGSAYFAPA 244 (321)
T ss_pred c-CCCccHHHHH
Confidence 7 5667777653
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.9e-45 Score=331.67 Aligned_cols=218 Identities=29% Similarity=0.358 Sum_probs=182.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC--C--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~--~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
||+||||+|+||+++++.|+.+++++ +++|+|++ . ++++++||.|+........ ..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEE
Confidence 69999999999999999999988875 79999995 2 6899999999874321111 1233446899999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechH
Q 025206 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV 178 (256)
Q Consensus 101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds 178 (256)
|++||.|++++++|.+++..|++++++++++|++++ |++++|++|||+|+||++ +++.+| ++|+++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~~~sg-~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALV---LSNYAP-SIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH---HHHHcC-CCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 999999999999975543 456665 666679999 89999
Q ss_pred HHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccC-C----CC----CHHH--HHHHHHHHHhhHHHHHhhcC
Q 025206 179 VRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----NL----ADED--IKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 179 ~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~-~----~~----~~~~--~~~i~~~v~~~~~~i~~~k~ 246 (256)
+||+++||++++++|++|+ ++||||||+ ++||+||+++++ + ++ ++++ +++|.++++++|++|+++|+
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~ 234 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARK 234 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccC
Confidence 9999999999999999996 699999975 999999999997 4 32 2222 57899999999999999876
Q ss_pred CCcceeccc
Q 025206 247 GKGSATLSM 255 (256)
Q Consensus 247 ~~~s~~~s~ 255 (256)
|+ +.+++
T Consensus 235 ~~--t~~~i 241 (324)
T TIGR01758 235 LS--SALSA 241 (324)
T ss_pred CC--HHHHH
Confidence 44 44443
No 26
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-44 Score=325.84 Aligned_cols=218 Identities=30% Similarity=0.398 Sum_probs=183.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~ 95 (256)
+|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ +.++++|+.|+..+ ..+.. +.+++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 46799999999999999999999988775 999999952 57888999997532 23332 346678999
Q ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-
Q 025206 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV- 173 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~- 173 (256)
|||+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+|+++ +++.++++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~~~~~~~~~-ig~g 153 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI---LLKYAPSIPKEN-FTAL 153 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH---HHHHcCCCCHHH-EEee
Confidence 99999999999999999999999999999999999999997 899999999999975543 455556688888 888
Q ss_pred eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccC----C-CC----CHH--HHHHHHHHHHhhHHHH
Q 025206 174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-NL----ADE--DIKALTKRTQDGGTEV 241 (256)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~----~-~~----~~~--~~~~i~~~v~~~~~~i 241 (256)
|.||++||+++||++++++|++|+. +||||||+ ++||+||+++++ + ++ +++ .+++|.++++++|++|
T Consensus 154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I 232 (325)
T cd01336 154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232 (325)
T ss_pred ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence 8999999999999999999999975 59999975 999999999986 3 22 222 2589999999999999
Q ss_pred HhhcCCCcceecc
Q 025206 242 VEAKAGKGSATLS 254 (256)
Q Consensus 242 ~~~k~~~~s~~~s 254 (256)
+++|+|. ++++
T Consensus 233 i~~~~g~--t~~~ 243 (325)
T cd01336 233 IKARKLS--SAMS 243 (325)
T ss_pred HHccccc--hHHH
Confidence 9986444 4444
No 27
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.4e-43 Score=319.15 Aligned_cols=209 Identities=30% Similarity=0.461 Sum_probs=183.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|||+|||+ |.||+++++.|+.+|+..+|+|+|++. +.+.++|+.|.... .....+ +++ ++++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d-~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGD-YADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCC-HHHhCCCCEEEEccC
Confidence 59999998 999999999999999888999999984 67899999987532 223333 235 468999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~ 184 (256)
.+++++++|.+++..|+++++++++.|++++|+++++++|||+|+|+++ +++.+| +|++||||+ |.||++|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~---~~~~sg-~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYV---AYKLSG-LPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHHC-cCHHHeecccchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999975543 445555 999999999 79999999999
Q ss_pred HHHHcCCCCCceeEEEEeCCCCCceeecccccccCC------------CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA 246 (256)
Q Consensus 185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~ 246 (256)
||+++++++++|+++|+|||| ++++|+||++++++ .++++++++|.++++++|++|+++||
T Consensus 153 la~~~~v~~~~v~~~viGeHg-~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg 225 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHG-DSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKG 225 (308)
T ss_pred HHHHhCCCccceeceeeccCC-CcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999996 69999999999853 13345688999999999999999984
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.8e-42 Score=312.02 Aligned_cols=213 Identities=30% Similarity=0.525 Sum_probs=184.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC----CchhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----NTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~----~~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
|||+|+||+|+||++++..|+..|+.++|+|+|++ ++++..+|+.|... +...++.. +.+ ++++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d-~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSD-LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCC-HHHhCCCCEEEE
Confidence 69999998899999999999999998899999985 36788899998643 21223322 345 467999999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~ 181 (256)
++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++++ .+++.+| +|++|+||+ |.||++|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~---~~~~~~g-~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTY---KALKESG-FDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHhcC-CCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999999999999999997543 3456666 999999999 68999999
Q ss_pred HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C------CCHHHHHHHHHHHHhhHHHHHhhcCCC
Q 025206 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGK 248 (256)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~------~~~~~~~~i~~~v~~~~~~i~~~k~~~ 248 (256)
+++||+++++++++|+++|+|||| +++||+||++++++ + ++++++++|.++++++|++|++.||+.
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg-~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t 227 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHG-DSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCC-CceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999996 59999999999853 2 124557899999999999999999764
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-42 Score=312.01 Aligned_cols=217 Identities=37% Similarity=0.652 Sum_probs=183.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEe
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
++||+|||+ |+||+++++.++..++. ||+|+|+++ +++..+|+.|.... ...++. .++++ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence 479999998 99999999999999987 999999984 67888898876432 122332 24464 679999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHHH
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAK 182 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~~ 182 (256)
+|.|+++|++|.+++.+|++++++++++|++++|++++|++|||+|+|+++ +++.+ ++|++||||+| .||++||+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~---~~~~s-~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYV---ALKES-GFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHh-CCCcccEEEeCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999975443 34444 59999999995 89999999
Q ss_pred HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceecc
Q 025206 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254 (256)
Q Consensus 183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s 254 (256)
++||++++++|++|+++|+|||| ++++|+||++++++ + ++++++++|.+.+++.+++|++.+ ++++++++
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg-~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~ 228 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHG-DSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYA 228 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCC-CcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHH
Confidence 99999999999999999999996 59999999998852 2 456668999999999999999973 23334443
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=8.2e-42 Score=306.70 Aligned_cols=215 Identities=36% Similarity=0.601 Sum_probs=182.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
|+|||| |.||+.+++.++.+++. +|+|+|+++ +++..+|+.|.... ...++.. ++| +++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCC-HHHhCCCCEEEEecCC
Confidence 689998 99999999999999987 999999984 56777888876421 1233322 345 4679999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHHHHHH
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFY 185 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~~~~l 185 (256)
|+++|++|.+++.+|++++++++++|++++|++++|++|||+|.+++ .+++.+ ++||+||||+| .||++|++++|
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~---~~~~~s-~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTY---VAYKAS-GFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH---HHHHHh-CCCHHHEEEecchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996433 234444 49999999996 89999999999
Q ss_pred HHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (256)
Q Consensus 186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~ 255 (256)
|+++++++++|+++|+|||| ++++|+||++++++ + ++++++++|.+++++.|++|++.| |+++++++.
T Consensus 153 a~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~ 225 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHG-DTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAP 225 (300)
T ss_pred HHHhCCCccceEEEEEeCCC-CcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHH
Confidence 99999999999999999996 58999999999853 2 345568999999999999999988 455666654
No 31
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8e-42 Score=318.12 Aligned_cols=220 Identities=19% Similarity=0.180 Sum_probs=182.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC----CchhHHHHHhcccCC--CcEEEEecCCcccc
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA----NTPGVAADVGHINTR--SEVAGYMGNDQLGQ 92 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~----~~~g~~~dl~~~~~~--~~v~~~~~t~d~~e 92 (256)
++.+|.+|+|+||+|++|+++.+.++...+++ .|+|+|++ .++|+++||+|+.++ ..+.+.. +.++
T Consensus 119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~~e 195 (452)
T cd05295 119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DLDV 195 (452)
T ss_pred cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CCHH
Confidence 34467899999999999999999999866543 69999994 378999999998743 2344432 3468
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p--~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv 170 (256)
+++|||+||+++|.|+++|++|.|++..|.+++++++++|.+++| ++++|++|||+|+|+++ +++.++++|++||
T Consensus 196 a~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i---~~k~apgiP~~rV 272 (452)
T cd05295 196 AFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI---LIKYAPSIPRKNI 272 (452)
T ss_pred HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHE
Confidence 999999999999999999999999999999999999999999998 89999999999986544 4566646999999
Q ss_pred EEEeechHHHHHHHHHHHcCCCCCce-eEEEEeCCCCCceeecccccccCC-------------C----CCHHH--HHHH
Q 025206 171 FGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----LADED--IKAL 230 (256)
Q Consensus 171 iG~t~lds~R~~~~la~~l~v~~~~v-~~~v~G~Hg~~~~vp~~s~~~~~~-------------~----~~~~~--~~~i 230 (256)
||++.||++|++++||+++|+++++| +++|||||| +++||+||++++++ + +.+++ .+++
T Consensus 273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~ 351 (452)
T cd05295 273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF 351 (452)
T ss_pred EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence 99988999999999999999999999 479999997 59999999999843 2 12222 3678
Q ss_pred HHHHHhhHHHHHhhcCCCcceecccC
Q 025206 231 TKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 231 ~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
.+.++++++ ++| +|+++|.|
T Consensus 352 ~~~v~~rg~---~rk---gsT~~siA 371 (452)
T cd05295 352 VATLKSLSS---SLN---HEAAISPA 371 (452)
T ss_pred HHHHHHHHH---hcc---CChHHHHH
Confidence 889999998 444 35666643
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1.8e-40 Score=298.04 Aligned_cols=191 Identities=28% Similarity=0.365 Sum_probs=161.0
Q ss_pred EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q 025206 56 RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC 129 (256)
Q Consensus 56 eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~ 129 (256)
.++|+|+++ ++|+++||.|+..+ ..++. +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999973 68999999998732 23331 2354689999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHHHcCCCCCce-eEEEEeCCCC
Q 025206 130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG 206 (256)
Q Consensus 130 ~~i~~~-~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~Hg~ 206 (256)
++|.++ +|++++|++|||+|+||++ +++.+| +|++|+||+ |.|||+||+++||++++++|++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~---~~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALI---LKEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHH---HHHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 8999999999999975543 455566 999999999 79999999999999999999999 6999999975
Q ss_pred Cceeeccccccc----CC-CC----CHHH--HHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206 207 ITILPLFSQATP----KA-NL----ADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (256)
Q Consensus 207 ~~~vp~~s~~~~----~~-~~----~~~~--~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~ 256 (256)
++||+||++++ ++ ++ .+++ .++|.++++++|++|+++|+| ++++|+|
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg--~t~~~ia 225 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKL--SSALSAA 225 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCc--cHHHHHH
Confidence 99999999999 43 22 2333 678999999999999998533 4566543
No 33
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.2e-38 Score=281.28 Aligned_cols=181 Identities=37% Similarity=0.578 Sum_probs=159.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC--CccEEEEEeCCC--chhHHHHHhcccCCC-cEEEEecCCccccccCCCCEEEEecC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~--~~~eV~LiD~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|+||||+|.+|+++++.|++.+ ...||+|+|+++ +++..+|++|..... ..++.. ++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCchHHHhCCCCEEEECCC
Confidence 6899988999999999999999 677999999983 788899999876432 234333 5677899999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l 185 (256)
.++++|++|.+++.+|++++++++++|+++||++|+|++|||+|.|+++ +++.+ ++|++|+||+|.+|++|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~---~~~~s-g~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYL---VWRYS-GLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHh-CCCchhEEEeecchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964432 34444 4999999999669999999999
Q ss_pred HHHcCCCCCceeEEEEeCCCCCceeecccccc
Q 025206 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQAT 217 (256)
Q Consensus 186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~ 217 (256)
|+++++++++|+++|||+||+ +++|+||+++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~ 186 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR 186 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch
Confidence 999999999999999999975 7999999876
No 34
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.1e-38 Score=287.01 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=156.3
Q ss_pred EEEEEeCCC----chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 025206 56 RLALYDIAN----TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130 (256)
Q Consensus 56 eV~LiD~~~----~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~ 130 (256)
.++|+|+++ ++|+++||.|+.++ ...... +.+++++++|||+||++||.|+++|++|.|++..|+++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 799999974 68999999998832 222222 34666799999999999999999999999999999999999999
Q ss_pred HHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCC
Q 025206 131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGI 207 (256)
Q Consensus 131 ~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~ 207 (256)
+|++++| ++++|++|||+|+||++ ++++.+++|++ +||+ |.|||+||+++||++++++|++|+. +|||||| +
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v---~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG-~ 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLV---AMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHA-E 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHH---HHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCC-C
Confidence 9999995 58899999999975543 22455559998 9999 8999999999999999999999975 5999997 5
Q ss_pred ceeeccccccc--CC-C------CCHH-HHHHHHHHHHhhHHHHHhhcCC
Q 025206 208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAG 247 (256)
Q Consensus 208 ~~vp~~s~~~~--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~~ 247 (256)
++||+||++++ ++ + ++++ .+++|.++++++|++|+++||.
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~ 219 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGF 219 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999 53 2 2332 3689999999999999999863
No 35
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=2.7e-33 Score=225.32 Aligned_cols=139 Identities=42% Similarity=0.644 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
|||+||||+|.||+++++.|+++++++||+|+|++ +++|+++||+|............. +.+++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEeccc
Confidence 69999999999999999999999999999999999 479999999998754433222222 446899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG 172 (256)
|+++|++|.+++..|++++++++++|.+++|+++++++|||+|+ +++++++.+++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~----~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV----MTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH----HHHHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH----HHHHHHHhhCcCcccCcC
Confidence 99999999999999999999999999999999999999999995 445555555599999998
No 36
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.4e-33 Score=236.11 Aligned_cols=224 Identities=32% Similarity=0.403 Sum_probs=191.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~ 96 (256)
.++.+|.|.||+|++|+++.+.++....+ -.++|+|+.+ ++|..|+|+|+.++. ++....++|..++++|
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~Pl-L~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPL-LKGVVATTDEVEAFKD 80 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhH-HHhhhcccChhhhhcc
Confidence 35779999999999999999998754222 1789999984 689999999998764 2222336677899999
Q ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175 (256)
Q Consensus 97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ 175 (256)
.|+.|...+.||++|++|.|++..|.+|++.-..++++|+ |++.++++.||.+.+..|+ .++..++|.+++-.+|.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTR 157 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTR 157 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhh
Confidence 9999999999999999999999999999999999999999 8999999999999988664 45567799999999999
Q ss_pred chHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC---C------C-CHHHH-HHHHHHHHhhHHHHHh
Q 025206 176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA---N------L-ADEDI-KALTKRTQDGGTEVVE 243 (256)
Q Consensus 176 lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~---~------~-~~~~~-~~i~~~v~~~~~~i~~ 243 (256)
||.+|+..+||.++|++.++|. +.+||||+ +||+|++-++++.. . + ++.++ .++.+.|+++|..||+
T Consensus 158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ 236 (332)
T KOG1496|consen 158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK 236 (332)
T ss_pred hchhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence 9999999999999999999996 89999997 59999999999841 1 2 33444 5899999999999999
Q ss_pred hcCCCcceecccC
Q 025206 244 AKAGKGSATLSMA 256 (256)
Q Consensus 244 ~k~~~~s~~~s~~ 256 (256)
.+ +-|+++|.|
T Consensus 237 ar--k~SSA~SaA 247 (332)
T KOG1496|consen 237 AR--KLSSAMSAA 247 (332)
T ss_pred hh--hhhhhhhHH
Confidence 87 446788865
No 37
>PRK15076 alpha-galactosidase; Provisional
Probab=99.94 E-value=1.3e-26 Score=217.14 Aligned_cols=174 Identities=20% Similarity=0.255 Sum_probs=135.5
Q ss_pred CceEEEEcCCCCcHHHHHH--HHH-cCCCc-cEEEEEeCCC--ch-hHHHHHhccc--CCCcEEEEecCCccccccCCCC
Q 025206 28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIAN--TP-GVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD 98 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~--~l~-~~~~~-~eV~LiD~~~--~~-g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aD 98 (256)
++||+|||| |.+|++.++ .++ ..++. .||+|+|+++ ++ +..+ +.+.. .....++. .++|++++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 369999998 999998877 555 34554 3999999984 32 2222 33321 11223433 2668889999999
Q ss_pred EEEEecCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHH
Q 025206 99 VVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155 (256)
Q Consensus 99 vVIi~ag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~ 155 (256)
+||++++.+ .+++ ++|.|. ..+|+++++++++.|+++||++|+|++|||+|. +
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~di----v 153 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAM----N 153 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHH----H
Confidence 999999887 3444 445566 899999999999999999999999999999994 5
Q ss_pred HHHHHHhCCCCCCcEEEEe--echHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206 156 AEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK 219 (256)
Q Consensus 156 ~~~~~~~~~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~ 219 (256)
+++++ + +|+.||||+| .+|+. +.+|+.+|+++++|++++.| || +.|+..+...
T Consensus 154 t~~~~--~-~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH-----~~W~~~~~~~ 209 (431)
T PRK15076 154 TWAMN--R-YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH-----MAWYLELERK 209 (431)
T ss_pred HHHHh--c-CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc-----hhhheeeeEC
Confidence 56655 3 8889999997 47764 78999999999999999999 99 7798888863
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.94 E-value=9.4e-26 Score=210.88 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=131.5
Q ss_pred ceEEEEcCCCCcHHH--HHHHHHcCC--C-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206 29 RKVAVLGAAGGIGQP--LALLMKLNP--L-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~--la~~l~~~~--~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD 98 (256)
+||+|||| |+. .+ +...|+... + .+||+|+|+++ + ...+..+.+.. ...+++.. |+|+++|++|||
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gAD 76 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDAD 76 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence 69999999 754 22 233444433 3 57999999994 2 12233333222 12344433 779999999999
Q ss_pred EEEEecCCCC------------CCC---C-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206 99 VVIIPAGVPR------------KPG---M-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 99 vVIi~ag~~~------------~~g---~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
|||.+..... +.| + -......+|+++++++++.|+++||++|+|++|||+|. ++++
T Consensus 77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di----~t~a 152 (425)
T cd05197 77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGE----VTEA 152 (425)
T ss_pred EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHH----HHHH
Confidence 9999864321 221 1 12344678999999999999999999999999999994 5566
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK 219 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~ 219 (256)
.++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||| ||||.++++
T Consensus 153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~ 206 (425)
T cd05197 153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN 206 (425)
T ss_pred HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence 6555 478999999977 8999999999999999999999999 994 899999985
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.93 E-value=3.7e-25 Score=206.57 Aligned_cols=175 Identities=19% Similarity=0.251 Sum_probs=133.2
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHcC-C-C-ccEEEEEeCC-Cch-----hHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206 29 RKVAVLGAAGGIGQP-LALLMKLN-P-L-VSRLALYDIA-NTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~-la~~l~~~-~-~-~~eV~LiD~~-~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD 98 (256)
|||+|||| |++-.. +...|+.. . + .+||+|+|++ +.+ ..+.++.+.. ...+++.. |+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence 69999999 765332 33344442 2 3 5799999999 421 1122222221 12344433 679999999999
Q ss_pred EEEEecCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206 99 VVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 99 vVIi~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
+||++++.++.++.++.+ ...+|+++++++++.|+++||++|+|++|||+| +++++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a 153 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA 153 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence 999999877666554444 367899999999999999999999999999999 55666
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK 219 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~ 219 (256)
+++.+ +.||||+|+.+ .|+++.+|+.+|+++++|+++|+| || +.|+..++..
T Consensus 154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH-----~~w~~~~~~~ 206 (419)
T cd05296 154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNH-----LGWLRRVLLD 206 (419)
T ss_pred HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEeccc-----ceeeeeeeEC
Confidence 66653 78999999875 799999999999999999999999 99 6788877763
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.90 E-value=4.1e-23 Score=193.56 Aligned_cols=176 Identities=20% Similarity=0.170 Sum_probs=134.9
Q ss_pred ceEEEEcCCCCcHHHHHH--HHHcC-CCc-cEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCCEE
Q 025206 29 RKVAVLGAAGGIGQPLAL--LMKLN-PLV-SRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~--~l~~~-~~~-~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
+||+|||| |.+|++.+. .++.. .+. .+|+|+|+++ ++....++.+.. .....++. .++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 58999998 999998776 34432 332 3999999984 444444444321 11123332 266888999999999
Q ss_pred EEecCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206 101 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 101 Ii~ag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
|++++.+..++.++ .....+|.+++.++++.+.++||++|++++|||++. ++++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i----~t~~ 154 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAE----LTWA 154 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHH----HHHH
Confidence 99998655544433 445678999999999999999999999999999994 5566
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK 219 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~ 219 (256)
+++.. + .|+||+|+. +.++++.+|+.+++++++|+++++| || +.|+..+...
T Consensus 155 ~~k~~--~-~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH-----~~w~~~~~~~ 207 (423)
T cd05297 155 LNRYT--P-IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH-----MAWLLKFEYN 207 (423)
T ss_pred HHHhC--C-CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc-----HhhhhhheEC
Confidence 65553 2 799999966 7799999999999999999999999 99 6788877763
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.89 E-value=3.9e-22 Score=186.94 Aligned_cols=190 Identities=18% Similarity=0.264 Sum_probs=135.3
Q ss_pred ceEEEEcCCCCcHHH--HHHHHHcC--CC-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206 29 RKVAVLGAAGGIGQP--LALLMKLN--PL-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~--la~~l~~~--~~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD 98 (256)
|||+|||| |++ .+ +...|++. .+ .+||+|+|++. + ...+..+.+.. ...+++.. |+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCC
Confidence 69999999 754 22 33344444 23 57999999994 2 12223332221 22355443 779999999999
Q ss_pred EEEEecCCC------------CCCC---CC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206 99 VVIIPAGVP------------RKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 99 vVIi~ag~~------------~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
|||.+.... .+.| ++ -.....+|+++++++++.|+++||++|+|++|||+|. ++++
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~----vt~~ 152 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAI----VAEA 152 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHH----HHHH
Confidence 999986432 1222 11 2345689999999999999999999999999999994 5566
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHHHh
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRTQD 236 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~ 236 (256)
.++. +|+.||||+|+... .++..+|+.+|+++++++..+.| || +.|+..++... ..+-+++|.+.+.+
T Consensus 153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH-----~~w~~~~~~~~--G~D~~p~l~e~~~~ 221 (437)
T cd05298 153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH-----FGWFTKIYDKQ--GEDLLPKLREHVKE 221 (437)
T ss_pred HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecc-----hhhhhheEECC--CCchHHHHHHHHhc
Confidence 6555 78899999998764 57888999999999999999999 99 67888777541 22334555554433
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.86 E-value=7.9e-21 Score=175.58 Aligned_cols=191 Identities=23% Similarity=0.289 Sum_probs=135.8
Q ss_pred CCceEEEEcCCCCcHHHHHH--HHHcC-CC-ccEEEEEeCCC--ch---hHHHHHhc-ccCCCcEEEEecCCccccccCC
Q 025206 27 PDRKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TP---GVAADVGH-INTRSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~--~l~~~-~~-~~eV~LiD~~~--~~---g~~~dl~~-~~~~~~v~~~~~t~d~~eal~~ 96 (256)
+..||+|||| |+++.+--. .|... .+ ..||+|+|++. ++ ..+..+.+ ...+ +++.. ++|+++|++|
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~kv~~-ttd~~eAl~g 77 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--VKVEA-TTDRREALEG 77 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--eEEEE-ecCHHHHhcC
Confidence 4579999999 987775422 23333 23 56999999983 22 11222222 2223 44443 6799999999
Q ss_pred CCEEEEecCC------------CCCCC---CC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH
Q 025206 97 SDVVIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA 156 (256)
Q Consensus 97 aDvVIi~ag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~ 156 (256)
||||+.++.. |.+.| ++ ....-.++++++.+|++.|+++||+||++++|||+. ++|
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vT 153 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVT 153 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHH
Confidence 9999998643 22222 11 223456889999999999999999999999999999 678
Q ss_pred HHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCC-CceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHH
Q 025206 157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRT 234 (256)
Q Consensus 157 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v 234 (256)
++.++. +|.-|+||+|+... -....||+.||+++ +++++.+.| || +.||..+...+ .+-++++.+.+
T Consensus 154 eAv~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH-----~~w~~~~~~~G---~d~~p~l~~~~ 222 (442)
T COG1486 154 EAVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNH-----MVWILRVRDDG---EDLYPELLEAL 222 (442)
T ss_pred HHHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechh-----hhhhhHhhhcC---ccchHHHHHHH
Confidence 887776 56449999998653 56788999999975 999999999 99 67888887632 23334555555
Q ss_pred Hh
Q 025206 235 QD 236 (256)
Q Consensus 235 ~~ 236 (256)
++
T Consensus 223 ~~ 224 (442)
T COG1486 223 EE 224 (442)
T ss_pred hc
Confidence 43
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.82 E-value=3.3e-19 Score=148.54 Aligned_cols=152 Identities=23% Similarity=0.263 Sum_probs=103.2
Q ss_pred eEEEEcCCCCcHHHHHH--HHHcCC-C-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 30 KVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~--~l~~~~-~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
||+|||| |++-.+... .+...+ + .+||+|+|+++ + ...+..+.+.. ...+++.. ++|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence 8999999 988776432 333333 3 46999999994 2 12223333222 12344333 67999999999999
Q ss_pred EEecCC------------CCCCCCC----------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206 101 IIPAGV------------PRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 101 Ii~ag~------------~~~~g~~----------r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
|++... |.+.|.. -.....++++.+.++++.|+++|||||+|++|||+. +++++
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a 153 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA 153 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence 998753 3343311 234567899999999999999999999999999999 56667
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCC
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v 191 (256)
+.+. +|..|++|+|+... -+...+|+.||+
T Consensus 154 ~~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~ 183 (183)
T PF02056_consen 154 LSRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM 183 (183)
T ss_dssp HHHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred HHHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence 6655 56689999998754 567888998874
No 44
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.72 E-value=6e-18 Score=140.60 Aligned_cols=80 Identities=38% Similarity=0.581 Sum_probs=70.8
Q ss_pred eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 025206 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV 242 (256)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~ 242 (256)
|.||++||+++||+++|++|.+++++||||||+ ++||+||++++++ .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 579999999999999999999999999999975 8999999999852 2567778999999999999999
Q ss_pred hhcCCCcceecccC
Q 025206 243 EAKAGKGSATLSMA 256 (256)
Q Consensus 243 ~~k~~~~s~~~s~~ 256 (256)
++|+ +++++|+|
T Consensus 80 ~~k~--g~t~~s~A 91 (174)
T PF02866_consen 80 KAKG--GSTSYSIA 91 (174)
T ss_dssp HHHS--SSCHHHHH
T ss_pred eecc--ccCcCCHH
Confidence 9996 45777654
No 45
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.15 E-value=5.5e-10 Score=100.28 Aligned_cols=162 Identities=23% Similarity=0.315 Sum_probs=108.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hh--H----HHHHhccc-C-----CCcEEEEecCCcccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--V----AADVGHIN-T-----RSEVAGYMGNDQLGQ 92 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g--~----~~dl~~~~-~-----~~~v~~~~~t~d~~e 92 (256)
.+||+|||| |.+|+.+|+.++..|+ +|+++|+++. ++ . ...+.... . ...+.....++++ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999998 9999999999999778 9999999831 11 1 11111111 0 0111112224454 3
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEE
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kvi 171 (256)
++++||+||.++ .+|.++.+++.+++.+++ |++++ .||.+.. ..+++.... ..|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence 899999999984 567899999999999999 68776 9999987 346676655 5788999
Q ss_pred EE-------------------eechHHHHHHHHHHHcCCCCCcee-EE-EEeCCCCCceeecccccc
Q 025206 172 GV-------------------TTLDVVRAKTFYAGKANVNVAEVN-VP-VVGGHAGITILPLFSQAT 217 (256)
Q Consensus 172 G~-------------------t~lds~R~~~~la~~l~v~~~~v~-~~-v~G~Hg~~~~vp~~s~~~ 217 (256)
|+ |.-++...-..+++++|..|--++ ++ .++|+ -..|+|..+.
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NR---il~~~~~eA~ 201 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNR---LLAALLNEAI 201 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHh---HHHHHHHHHH
Confidence 98 223566666778888886551111 22 44454 2356665444
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.15 E-value=1.1e-10 Score=97.50 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=79.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c---hhHHHH-Hh---c-ccC--------CCcEEEEecCCccc
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T---PGVAAD-VG---H-INT--------RSEVAGYMGNDQLG 91 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~---~g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~ 91 (256)
||+|+|+ |.+|..+|..++..|+ +|+|+|.+. + .....+ +. + ... ..+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999998 9999999999999999 999999983 1 111111 11 1 110 124553 45776
Q ss_pred cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (256)
Q Consensus 92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv 170 (256)
++. +||+||.+. .++.++.+++...+++.+ |++++ +||.+.. -++++....+ .|+|+
T Consensus 75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~ 132 (180)
T PF02737_consen 75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF 132 (180)
T ss_dssp GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence 665 999999984 345788999999999999 67765 8998876 3566665543 57889
Q ss_pred EEEe
Q 025206 171 FGVT 174 (256)
Q Consensus 171 iG~t 174 (256)
+|+-
T Consensus 133 ig~H 136 (180)
T PF02737_consen 133 IGMH 136 (180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9984
No 47
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=1.1e-08 Score=93.69 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=81.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--------------hHHHHHhc-ccCCCcEEEEecCCccccc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--------------GVAADVGH-INTRSEVAGYMGNDQLGQA 93 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--------------g~~~dl~~-~~~~~~v~~~~~t~d~~ea 93 (256)
|||+|+|. |+||...+..|++.|| +|+++|+++.+ |. .+|.. .....+++. |+|++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgL-e~ll~~~~~~gRl~f---Ttd~~~a 73 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGL-EELLKENLASGRLRF---TTDYEEA 73 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccH-HHHHHhccccCcEEE---EcCHHHH
Confidence 79999997 9999999999999999 99999998311 11 11221 111224553 6788899
Q ss_pred cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEe-cCCCCCchHH
Q 025206 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMI-SNPVNSTVPI 154 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-~~iiv~-tNPvd~~~~i 154 (256)
++++|++||+.|+|+++.. -. ++..+...++.|.++.+. +++++- |=|+...-.+
T Consensus 74 ~~~adv~fIavgTP~~~dg-~a-----Dl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v 130 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDG-SA-----DLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV 130 (414)
T ss_pred HhcCCEEEEEcCCCCCCCC-Cc-----cHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence 9999999999999988732 22 367788888888888866 444433 5688865443
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.00 E-value=4.2e-09 Score=95.60 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=83.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h---hH---HH-HHhccc-----CCCcEEEEecCCccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GV---AA-DVGHIN-----TRSEVAGYMGNDQLGQA 93 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~---g~---~~-dl~~~~-----~~~~v~~~~~t~d~~ea 93 (256)
..||+|||+ |.+|+.+|..++..|+ +|+++|++.. . .. .. .+.... ...+++. +++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC 80 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence 358999998 9999999999999999 9999999731 1 00 01 111110 0123332 4467788
Q ss_pred cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
+++||+|+.++ .+|.++.+++...+.+++|... |+.||.+.. ..+++.... -.|+|++|+
T Consensus 81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~~--~~p~R~~g~ 140 (321)
T PRK07066 81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYARA--THPERCVVG 140 (321)
T ss_pred hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHhc--CCcccEEEE
Confidence 99999999984 3457778889999999995433 458998875 345565544 356889997
No 49
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.90 E-value=1.4e-08 Score=101.24 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=86.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HHHHH-----hcccC--------CCcEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VAADV-----GHINT--------RSEVAGYMGND 88 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~~dl-----~~~~~--------~~~v~~~~~t~ 88 (256)
+..||+|||| |.+|..+|..++..|+ +|+|+|++. + .+ ...+. .+... ..+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 4468999998 9999999999999999 999999983 1 11 11111 11110 123443 44
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
++ +++++||+||.++ .+++++.+++..++++.+ |++++ .||.+.. -++++.... -.|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p 443 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRP 443 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCc
Confidence 65 5789999999984 356889999999999999 56655 9999887 345666655 357
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
+|++|+
T Consensus 444 ~r~ig~ 449 (714)
T TIGR02437 444 ENFCGM 449 (714)
T ss_pred ccEEEE
Confidence 899998
No 50
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.89 E-value=1.9e-08 Score=100.34 Aligned_cols=119 Identities=21% Similarity=0.344 Sum_probs=86.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCC--c-hh--HHHHHh-----ccc--------CCCcEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN--T-PG--VAADVG-----HIN--------TRSEVAGYMGN 87 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~--~-~g--~~~dl~-----~~~--------~~~~v~~~~~t 87 (256)
...||+|||| |.+|..+|..++ ..|+ +|+|+|.+. + .+ ...+.. +.. ...+++. +
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 381 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T 381 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence 3468999998 999999999998 7899 999999973 1 11 111111 110 0123443 4
Q ss_pred CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (256)
Q Consensus 88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~ 166 (256)
+++ +++++||+||.++ .+|.++.+++..++++++ |++++ .||.+.. -++++.... -.
T Consensus 382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l---~i~~la~~~--~~ 439 (708)
T PRK11154 382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSL---PIGQIAAAA--AR 439 (708)
T ss_pred CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHHhc--Cc
Confidence 565 6889999999984 457899999999999999 67665 8999887 346666655 35
Q ss_pred CCcEEEE
Q 025206 167 EKKLFGV 173 (256)
Q Consensus 167 ~~kviG~ 173 (256)
|+|++|+
T Consensus 440 p~r~ig~ 446 (708)
T PRK11154 440 PEQVIGL 446 (708)
T ss_pred ccceEEE
Confidence 7899998
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.89 E-value=1.8e-08 Score=90.16 Aligned_cols=118 Identities=14% Similarity=0.257 Sum_probs=80.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chh---HH---HH-Hhccc-C--------CCcEEEEecCCc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG---VA---AD-VGHIN-T--------RSEVAGYMGNDQ 89 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g---~~---~d-l~~~~-~--------~~~v~~~~~t~d 89 (256)
..||+|||+ |.+|..+|..++..|+ +|+++|++. +.. .. +| +.+.. . ..+++. +++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~ 78 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD 78 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence 348999998 9999999999999999 999999983 111 10 11 11111 0 113332 456
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
+ +++++||+||.++ .+|.++.+++...+++++ |++++ +||.+... .+.+.... -.+
T Consensus 79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~~~--~~~ 136 (286)
T PRK07819 79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAAAT--KRP 136 (286)
T ss_pred H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCC
Confidence 6 6789999999994 345788888999999997 45554 88887753 23444433 356
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
+|++|+
T Consensus 137 ~r~~g~ 142 (286)
T PRK07819 137 GRVLGL 142 (286)
T ss_pred ccEEEE
Confidence 788887
No 52
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.89 E-value=1.8e-08 Score=100.66 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=85.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HH----HHH-hcccC--------CCcEEEEecCCc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VA----ADV-GHINT--------RSEVAGYMGNDQ 89 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~----~dl-~~~~~--------~~~v~~~~~t~d 89 (256)
..||+|||| |.+|..+|..++..|+ +|+|+|++. + .+ .. ..+ .+... ..+++. +++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 386 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD 386 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence 358999998 9999999999999999 999999983 1 11 11 011 11110 123443 456
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~ 168 (256)
+ +++++||+||.++ .+++++.+++..++++++ |++++ .||.+.. -++++..... .|+
T Consensus 387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~ 444 (715)
T PRK11730 387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RPE 444 (715)
T ss_pred H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CCc
Confidence 5 6789999999984 356889999999999999 56554 9999886 3456666553 578
Q ss_pred cEEEE
Q 025206 169 KLFGV 173 (256)
Q Consensus 169 kviG~ 173 (256)
|++|+
T Consensus 445 r~~g~ 449 (715)
T PRK11730 445 NFCGM 449 (715)
T ss_pred cEEEE
Confidence 99997
No 53
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.88 E-value=1.8e-08 Score=100.73 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HHHHH-----hcccC--------CCcEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VAADV-----GHINT--------RSEVAGYMGND 88 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~~dl-----~~~~~--------~~~v~~~~~t~ 88 (256)
+..||+|||| |.+|+.+|..++..|+ +|+|+|++. + ++ ...+. ..... ..+++. ++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence 4468999998 9999999999999999 999999983 1 11 11111 11100 123443 45
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
++ +++++||+||.++ .+|.++.+++..++++++ |++++ .||.+.. -++++..... .|
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p 465 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSAL---PIKDIAAVSS--RP 465 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--Cc
Confidence 65 5789999999984 457899999999999999 56655 8999886 3456666553 57
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
+|++|+
T Consensus 466 ~r~ig~ 471 (737)
T TIGR02441 466 EKVIGM 471 (737)
T ss_pred cceEEE
Confidence 899997
No 54
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.87 E-value=3.7e-09 Score=88.79 Aligned_cols=121 Identities=23% Similarity=0.331 Sum_probs=70.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc---------------c-CCCcEEEEecCCcccc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI---------------N-TRSEVAGYMGNDQLGQ 92 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~---------------~-~~~~v~~~~~t~d~~e 92 (256)
|||+|||. |+||.++|..|+..|+ +|+.+|+++. ....++.. . ...+++. +++..+
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE 72 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence 79999998 9999999999999999 9999999831 11111111 1 1234554 457778
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCchHHHHHHHHHhC
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~~~~i~~~~~~~~~ 163 (256)
++++||++|+|.++|..++.+ . +...+.+.++.|.++. ++.++++=| =|+..+--++..++++.+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~-~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGS-P-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HHHH-SEEEE----EBETTTS-B-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhccceEEEecCCCccccCC-c-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 899999999999998766422 1 2344556666666655 445544444 477754333444556555
No 55
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.87 E-value=2e-08 Score=89.66 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=78.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHH-------HHhc--ccC---------CCcEEEEecCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA-------DVGH--INT---------RSEVAGYMGND 88 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~-------dl~~--~~~---------~~~v~~~~~t~ 88 (256)
.+||+|||+ |.+|..+|..++..|+ +|+++|++.. ..... +... ... ..+++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 468999998 9999999999999998 9999999831 01111 1100 000 012332 45
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
++++++++||+||++.. ++.+..+++.+++.++++ ++++ ++|.+.. ..+++.+... .+
T Consensus 77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP 135 (287)
T ss_pred CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence 77778999999999952 235667788888888875 5543 6777665 2345555442 45
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
.|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 688876
No 56
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.85 E-value=3.2e-08 Score=98.60 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=85.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCC--c-hh--HH-HHHh----cccC--------CCcEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN--T-PG--VA-ADVG----HINT--------RSEVAGYMGN 87 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~--~-~g--~~-~dl~----~~~~--------~~~v~~~~~t 87 (256)
+..||+|||| |.+|+.+|..++ ..|+ +|+|+|++. + .+ .. ..+. .... ..+++. +
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence 3468999998 999999999988 4799 999999983 1 11 11 1111 1000 123443 4
Q ss_pred CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (256)
Q Consensus 88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~ 166 (256)
+++ +++++||+||.++ .+++++.+++..++++++ |++++ .||.+.. -++++.... -.
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l---~i~~la~~~--~~ 434 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSL---PIGQIAAAA--SR 434 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCC---CHHHHHHhc--CC
Confidence 565 5789999999984 356888999999999999 56655 8999887 345666655 36
Q ss_pred CCcEEEE
Q 025206 167 EKKLFGV 173 (256)
Q Consensus 167 ~~kviG~ 173 (256)
|+|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 7899997
No 57
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.82 E-value=4.7e-09 Score=89.43 Aligned_cols=121 Identities=17% Similarity=0.321 Sum_probs=87.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-c-----hhHHHHHhccc-----------------CCCcEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-----PGVAADVGHIN-----------------TRSEVAG 83 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~-----~g~~~dl~~~~-----------------~~~~v~~ 83 (256)
+.+.|+|+|| |.+|+.+|...++.|+ .|+|+|.++ + +++...+.+.. ...+++.
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4568999998 9999999999999999 999999983 1 22222222211 0012332
Q ss_pred EecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhC
Q 025206 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 84 ~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~ 163 (256)
++++.+++.|||+||.+ ..+|+++.+++.+.+++.|+..-+ ..||.+.+ -++.+....
T Consensus 87 ---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~i-l~tNTSSl---~lt~ia~~~- 144 (298)
T KOG2304|consen 87 ---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTI-LATNTSSL---SLTDIASAT- 144 (298)
T ss_pred ---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceE-Eeecccce---eHHHHHhhc-
Confidence 45777889999999776 568999999999999999964332 38999876 345555433
Q ss_pred CCCCCcEEEE
Q 025206 164 TYNEKKLFGV 173 (256)
Q Consensus 164 ~~~~~kviG~ 173 (256)
-+|.|+.|+
T Consensus 145 -~~~srf~Gl 153 (298)
T KOG2304|consen 145 -QRPSRFAGL 153 (298)
T ss_pred -cChhhhcee
Confidence 467899998
No 58
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.80 E-value=9.7e-08 Score=90.26 Aligned_cols=123 Identities=14% Similarity=0.013 Sum_probs=82.6
Q ss_pred ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206 17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~ 96 (256)
+.+=++-...++|||.|+||+||||++++..|+.+|+ +|+.+|.... +....+.+......+....+ +-+.+.+.+
T Consensus 109 ~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~ 184 (436)
T PLN02166 109 TGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLE 184 (436)
T ss_pred cCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccC
Confidence 4444666677789999999999999999999999998 9999997521 11011111100112332221 122345789
Q ss_pred CCEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 97 SDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+|+||++|+... ....+..+.+..|+....++++.+++.+. .+|++|
T Consensus 185 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 185 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred CCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 999999997532 22234567788999999999999998763 565554
No 59
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=1.9e-07 Score=83.17 Aligned_cols=118 Identities=22% Similarity=0.384 Sum_probs=77.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhH------HHHHhccc-C--------CCcEEEEecCCc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV------AADVGHIN-T--------RSEVAGYMGNDQ 89 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~------~~dl~~~~-~--------~~~v~~~~~t~d 89 (256)
.+||+|||+ |.+|..++..++..|+ +|+++|++.. .+. ..++.+.. . ..+++. +++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 458999998 9999999999999998 9999999831 110 01111111 0 013332 345
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~ 168 (256)
+ +++++||+||+++. ++..+.+++.+.+.++++ ++++ +||..... ++.+....+ .+.
T Consensus 77 ~-~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD 134 (282)
T ss_pred H-HHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence 4 46899999999951 235566788888888884 5554 67776652 334555443 456
Q ss_pred cEEEE
Q 025206 169 KLFGV 173 (256)
Q Consensus 169 kviG~ 173 (256)
|++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 78887
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.69 E-value=6e-07 Score=77.13 Aligned_cols=147 Identities=21% Similarity=0.173 Sum_probs=85.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|||++|.+|++++..|+..|+ +|.++|.+. ......+..+... ....+... ++..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence 6899998449999999999999997 999998873 2222222211100 00111111 13357889999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCc------------hHHHHHHHHHhCCCCC-CcEE
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST------------VPIAAEVFKKAGTYNE-KKLF 171 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~------------~~i~~~~~~~~~~~~~-~kvi 171 (256)
.. ..+.++++.+....++.++|-++||.+.- . -.++.+++. +|+ .+|+
T Consensus 77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~-s~~e~l~~~--~p~~~~VV 137 (219)
T TIGR01915 77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEG-SAAEQAAAL--LPETSRVV 137 (219)
T ss_pred CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCC-cHHHHHHHh--CCCCCeEe
Confidence 31 12234444454443446888899998730 0 112444444 666 7887
Q ss_pred EE-eechHHHHHHHHHHHcCCCCCceeEEEEeCC
Q 025206 172 GV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGH 204 (256)
Q Consensus 172 G~-t~lds~R~~~~la~~l~v~~~~v~~~v~G~H 204 (256)
.. .++....+. . . ..+.....++.|++
T Consensus 138 ka~~~~~a~~~~----~-~-~~~~~~~~~v~Gdd 165 (219)
T TIGR01915 138 AAFHNLSAVLLQ----D-V-DDEVDCDVLVCGDD 165 (219)
T ss_pred eccccCCHHHhc----C-C-CCCCCCCEEEECCC
Confidence 77 445432222 1 1 23344557788876
No 61
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.68 E-value=3.9e-07 Score=86.92 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=75.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-------c--------CCCcEEEEecCCcccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-------N--------TRSEVAGYMGNDQLGQ 92 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-------~--------~~~~v~~~~~t~d~~e 92 (256)
+|||+|+|+ |+||.++|..|+..|+.-+|+.+|+++.+ ...++.. . ....+.. ++++.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK 74 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence 579999998 99999999999988643389999998311 1111111 0 0112332 456677
Q ss_pred ccCCCCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCCch
Q 025206 93 ALEDSDVVIIPAGVPRKPGM----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTV 152 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~--tNPvd~~~ 152 (256)
++++||++|+|.++|..++. ... ++..+.+.++.|.++.+++.+|+. |-|....-
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~-----Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCC-----cHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 89999999999999975321 122 245577788888877754434333 56888543
No 62
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.68 E-value=1.9e-07 Score=83.60 Aligned_cols=117 Identities=15% Similarity=0.298 Sum_probs=75.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHH-H-------Hh---cccC---------CCcEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA-D-------VG---HINT---------RSEVAGYMGN 87 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~-d-------l~---~~~~---------~~~v~~~~~t 87 (256)
.||+|||+ |.+|..++..++..|+ +|+++|++.. ..... . +. +... ..++.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999998 9999999999999998 9999999831 11110 0 11 1000 011222 3
Q ss_pred CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (256)
Q Consensus 88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~ 166 (256)
+++ +++++||+||++... +.++.+++.+++.++++ ++++ +||.... ..+++..... .
T Consensus 78 ~~~-~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~~--~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATALE--R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhcC--C
Confidence 454 578999999999522 24556777888888874 5554 5776664 2345554442 4
Q ss_pred CCcEEEE
Q 025206 167 EKKLFGV 173 (256)
Q Consensus 167 ~~kviG~ 173 (256)
+.|++|+
T Consensus 136 ~~r~ig~ 142 (291)
T PRK06035 136 KDRFIGM 142 (291)
T ss_pred cccEEEE
Confidence 6788887
No 63
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.65 E-value=1.4e-07 Score=86.27 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=102.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhc---ccCCCcEEEEecC----CccccccCC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH---INTRSEVAGYMGN----DQLGQALED 96 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~---~~~~~~v~~~~~t----~d~~eal~~ 96 (256)
.+++||.|+||+||+|++++..|+.+|. +|+.+|.... .....++.. .....+++.+.++ .++.+.+++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 3568999999999999999999999997 9999997521 111111110 0000123333221 123445789
Q ss_pred CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCCchHHHHHHHHHhCCCCCC
Q 025206 97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEK 168 (256)
Q Consensus 97 aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP------vd~~~~i~~~~~~~~~~~~~~ 168 (256)
+|+||++|+....+ ..+..+....|+....++++.+++.... .++.+|.. .+. ++ ..... ..|.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~----~e~~~-~~p~ 162 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK----IEERI-GRPL 162 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC----CCCCC-CCCC
Confidence 99999999764321 1344567888999999999999887543 34444421 010 00 00111 2244
Q ss_pred cEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
...|.+.+...++....++..+++..-++ ..++|.+
T Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 45666555444554555666788888887 5688965
No 64
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.64 E-value=1.6e-07 Score=83.82 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=73.8
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEE-EecCCccccccCCCCEEEEecCCCCCC
Q 025206 32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRKP 110 (256)
Q Consensus 32 ~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~eal~~aDvVIi~ag~~~~~ 110 (256)
.|+||+||+|++++..|+++|...+|+.+|+........++.+.....-+.. .....++.+++++||+||++|......
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 3899999999999999999995559999998742111112222111000111 111346778999999999998754333
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206 111 G-MTRDDLFNINAGIVKDLCSAIAKYCPN 138 (256)
Q Consensus 111 g-~~r~d~~~~N~~i~~~i~~~i~~~~p~ 138 (256)
+ ..+..++..|+...+.+++.+.+.+..
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 356678899999999999999987654
No 65
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.62 E-value=5.4e-07 Score=80.62 Aligned_cols=119 Identities=20% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHH----HHh----cccCC--------CcEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVG----HINTR--------SEVAGYMGND 88 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~----dl~----~~~~~--------~~v~~~~~t~ 88 (256)
..+||+|||+ |.+|..+|..|+..|+ +|+++|.+.. ..... .+. ....+ .+++. ++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 76 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---AT 76 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eC
Confidence 4569999998 9999999999999998 9999999831 11001 110 11110 12332 34
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
++ +++++||+||++... +..+.+.+.+.+.+++ |++++ +||.+... .+.+.+.. -.+
T Consensus 77 ~~-~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~ 134 (292)
T PRK07530 77 DL-EDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRP 134 (292)
T ss_pred CH-HHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCc
Confidence 54 468999999998521 1234456666777777 56655 46766642 23454443 235
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
.|++|+
T Consensus 135 ~r~~g~ 140 (292)
T PRK07530 135 ERFIGI 140 (292)
T ss_pred ccEEEe
Confidence 677775
No 66
>PLN02427 UDP-apiose/xylose synthase
Probab=98.60 E-value=4.5e-07 Score=83.96 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=74.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcc---cCCCcEEEEec----CCccccccC
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGYMG----NDQLGQALE 95 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~---~~~~~v~~~~~----t~d~~eal~ 95 (256)
+..++|||.|+||+||+|++++..|+.+ ++ +|+.+|.+... ...+... .....++...+ ..++.++++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 3446789999999999999999999987 46 89999875311 1111111 00112333221 123456788
Q ss_pred CCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
++|+||++|+..... ..+..+.+..|+....++++.+++.+ ..+|.+|.
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 999999999854221 12334556778888888888887765 35665653
No 67
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.60 E-value=7.4e-07 Score=85.15 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=119.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----CccccccCC--CC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD 98 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aD 98 (256)
+.+.|.|+||+|++|+.++..++..+. .+|+++|.++ ......++.+.....+++.+.++ ..+.+++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 456899999999999999999988754 6999999985 33344555542112223333221 235567888 99
Q ss_pred EEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206 99 VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (256)
Q Consensus 99 vVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t----NPvd~~~~i~~~~~~~~~~~~~~kviG 172 (256)
+|+++|....-|- .+..+-+..|+--.++++++..+++-+.++++.| ||.++| |
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------------G 387 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------------G 387 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh--------------------h
Confidence 9999998765553 3567778999999999999999998777776665 666643 2
Q ss_pred EeechHHHHHHHHHHHcC---CCCCcee-EEEEeCCCCCceeecccc-cccCCCC--CHHH-------HHHHHHHHHhhH
Q 025206 173 VTTLDVVRAKTFYAGKAN---VNVAEVN-VPVVGGHAGITILPLFSQ-ATPKANL--ADED-------IKALTKRTQDGG 238 (256)
Q Consensus 173 ~t~lds~R~~~~la~~l~---v~~~~v~-~~v~G~Hg~~~~vp~~s~-~~~~~~~--~~~~-------~~~i~~~v~~~~ 238 (256)
.|..-+..+-...++..+ -...-|+ +-|+|..| |.+|+|.. ..-++|+ ++-+ ++|-.+.|-+++
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~ 465 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAG 465 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHH
Confidence 221111111122222111 1222344 67999885 89999953 3334443 2221 355555565555
Q ss_pred HH
Q 025206 239 TE 240 (256)
Q Consensus 239 ~~ 240 (256)
..
T Consensus 466 a~ 467 (588)
T COG1086 466 AI 467 (588)
T ss_pred hh
Confidence 43
No 68
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.59 E-value=8e-07 Score=84.22 Aligned_cols=123 Identities=15% Similarity=0.028 Sum_probs=80.3
Q ss_pred ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206 17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~ 96 (256)
+.+.++-...+.|||.|+||+||||++++..|+++|+ +|+.+|.... +....+.+.....+++...++ -+..++.+
T Consensus 108 ~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~ 183 (442)
T PLN02206 108 GGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLE 183 (442)
T ss_pred CCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcC
Confidence 3444555555678999999999999999999999998 9999986421 000111110001123322211 22346678
Q ss_pred CCEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 97 SDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+|+||++|+... ....+..+.+..|+....++++.+++... .+|++|
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S 232 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 232 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 999999997542 11234567788999999999999987753 555554
No 69
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.58 E-value=4.2e-07 Score=87.33 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=79.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--ch-h--HH----HHHhccc-C--------CCcEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP-G--VA----ADVGHIN-T--------RSEVAGYMGND 88 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~-g--~~----~dl~~~~-~--------~~~v~~~~~t~ 88 (256)
+..||+|||+ |.+|+.+|..++..|+ +|+++|++. +. + .. ..+.... . ..+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 3458999998 9999999999999999 999999983 11 1 00 1111111 0 112332 34
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~ 168 (256)
++ +++++||+||.+. .++..+.+.+...+.+++++..+ ++||.+... .+++..... .|.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--ccc
Confidence 65 4678999999984 23467777888889999854433 488888763 345554442 467
Q ss_pred cEEEE
Q 025206 169 KLFGV 173 (256)
Q Consensus 169 kviG~ 173 (256)
|++|+
T Consensus 137 r~~G~ 141 (503)
T TIGR02279 137 RVAGL 141 (503)
T ss_pred ceEEE
Confidence 78887
No 70
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.5e-07 Score=80.99 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h---hHHHHHhcc-----cC--------CCcEEEEecCCcc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GVAADVGHI-----NT--------RSEVAGYMGNDQL 90 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~---g~~~dl~~~-----~~--------~~~v~~~~~t~d~ 90 (256)
.||+|||+ |.+|..+|..|+..|+ +|+++|++.. . ....++... .. ...++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999998 9999999999999998 9999999831 1 111111100 00 012332 3466
Q ss_pred ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK 169 (256)
Q Consensus 91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k 169 (256)
++++++||+||.+... +..+.+.+..++.+++ |++++ ++|.+..- + +++..... .+.+
T Consensus 76 ~~~~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il--~~~tSt~~--~-~~l~~~~~--~~~r 134 (288)
T PRK09260 76 KAAVADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI--ATNTSTMS--P-TEIASFTK--RPER 134 (288)
T ss_pred HHhhcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC--H-HHHHhhcC--Cccc
Confidence 7789999999998531 2344556666677777 45544 55655532 2 33444332 3456
Q ss_pred EEEE
Q 025206 170 LFGV 173 (256)
Q Consensus 170 viG~ 173 (256)
++|+
T Consensus 135 ~~g~ 138 (288)
T PRK09260 135 VIAM 138 (288)
T ss_pred EEEE
Confidence 6664
No 71
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.56 E-value=5.6e-07 Score=86.64 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=78.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hh--HHHH----Hh-cccC--------CCcEEEEecCCc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VG-HINT--------RSEVAGYMGNDQ 89 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g--~~~d----l~-~~~~--------~~~v~~~~~t~d 89 (256)
..||+|||+ |.+|..+|..++..|+ +|+++|++.. .+ ...+ +. +... ..+++. +++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~ 80 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA 80 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 358999998 9999999999999999 9999999831 11 1111 11 1100 112443 345
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~ 168 (256)
+ +++++||+||.+. .++..+.+.+...+.+.+ |++++ +||.+.+- + +++.... -.|+
T Consensus 81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~--i-~~la~~~--~~p~ 138 (507)
T PRK08268 81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS--I-TAIAAAL--KHPE 138 (507)
T ss_pred H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC--H-HHHHhhc--CCcc
Confidence 4 4678999999984 234667777778899888 56554 67776652 2 3454444 3568
Q ss_pred cEEEE
Q 025206 169 KLFGV 173 (256)
Q Consensus 169 kviG~ 173 (256)
|++|+
T Consensus 139 r~~G~ 143 (507)
T PRK08268 139 RVAGL 143 (507)
T ss_pred cEEEE
Confidence 88887
No 72
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.55 E-value=2e-07 Score=76.11 Aligned_cols=94 Identities=27% Similarity=0.411 Sum_probs=63.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc---C-----CCcEEEEecCCccccccCCCCEEE
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---T-----RSEVAGYMGNDQLGQALEDSDVVI 101 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~---~-----~~~v~~~~~t~d~~eal~~aDvVI 101 (256)
||+|+|| |..|.++|..|..+|+ +|.|++.++.....+.-.+.. . +..+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999998 9999999999999998 999999874211112222221 1 123443 568889999999999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (256)
Q Consensus 102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t 145 (256)
++. | ....+++++++..+- ++..+++++
T Consensus 75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 984 2 233578888888887 445555544
No 73
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=1.2e-06 Score=78.91 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHh---c---c-c----CCCcEEEEecCCcccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---H---I-N----TRSEVAGYMGNDQLGQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~---~---~-~----~~~~v~~~~~t~d~~eal 94 (256)
.+||+|||+ |.+|..++..|+..|+ +|+++|.+.. ......+. . . . ...+++. ++++.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 358999998 9999999999999998 9999998731 11111110 0 0 0 0011222 34556678
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
++||+||++... ......++...+...++ ++++ +||.+... ++++.+... .+.+++|+
T Consensus 78 ~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT 136 (311)
T ss_pred ccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence 999999998521 12334556666777664 4444 46665542 334544432 34677776
No 74
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.50 E-value=1.3e-07 Score=84.51 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=73.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEE----EecC----CccccccC--CCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG----YMGN----DQLGQALE--DSD 98 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~----~~~t----~d~~eal~--~aD 98 (256)
|.|+||+|++|+.++..|+..+. .+|+++|.++ +.....++.......+++. ..++ ..+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999998875 5899999984 3334444531111111221 1111 12345677 999
Q ss_pred EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCC
Q 025206 99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNS 150 (256)
Q Consensus 99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t----NPvd~ 150 (256)
+|+++|....-+ .....+.+..|+--.+++++...+++.+-++.+.| ||+++
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnv 137 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNV 137 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcH
Confidence 999999754322 23567788999999999999999998776666665 67774
No 75
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.48 E-value=3.3e-06 Score=76.62 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=96.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI 101 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVI 101 (256)
.+++|.|+||+|++|++++..|+++|+ +|++++.+.. .....++.......+++.+.+ ..++.+.++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 456899999999999999999999998 8877766531 111111111100012332221 123456678999999
Q ss_pred EecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------chHHHHHH-H----HHhCCCCCC
Q 025206 102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-------TVPIAAEV-F----KKAGTYNEK 168 (256)
Q Consensus 102 i~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~-------~~~i~~~~-~----~~~~~~~~~ 168 (256)
++|+.......+. .+++..|+.....+++.+.+...-..+|++|.-... ......+- + ......++.
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 9998532221222 345678999999999998876422345545431100 00000000 0 000002233
Q ss_pred cEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
...|.+.+-..++....++..+++..-++ ..|+|++
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 33444444344444555666787766666 4588865
No 76
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.46 E-value=1.8e-06 Score=77.89 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=73.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHH--------HHHhcccC---------CCcEEEEecCCcc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA--------ADVGHINT---------RSEVAGYMGNDQL 90 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~--------~dl~~~~~---------~~~v~~~~~t~d~ 90 (256)
+||+|||+ |.+|++++..|+..|+ +|+++|.++.. ... ..+.+... ..+++. ++++
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~~ 76 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDSL 76 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECcH
Confidence 58999998 9999999999999998 99999998411 100 01211110 112332 3467
Q ss_pred ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (256)
Q Consensus 91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv 170 (256)
.+++++||+|+++... +....+.+...+.+..++..++ .||.... ...++.+... .+.++
T Consensus 77 ~~a~~~ad~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~~ 136 (308)
T PRK06129 77 ADAVADADYVQESAPE--------------NLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRERC 136 (308)
T ss_pred HHhhCCCCEEEECCcC--------------CHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--CcccE
Confidence 7789999999998521 1333445566677777554444 5665543 2344555432 34566
Q ss_pred EEE
Q 025206 171 FGV 173 (256)
Q Consensus 171 iG~ 173 (256)
++.
T Consensus 137 ~~~ 139 (308)
T PRK06129 137 LVA 139 (308)
T ss_pred EEE
Confidence 665
No 77
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.45 E-value=6.2e-07 Score=80.33 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hH--------HHHHhcccC---------CCcEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV--------AADVGHINT---------RSEVAGYMGND 88 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~--------~~dl~~~~~---------~~~v~~~~~t~ 88 (256)
+..||+|||+ |.+|..+|..++..|+ +|+++|.+... .. ..++.+... ...+.. ++
T Consensus 3 ~~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~ 76 (295)
T PLN02545 3 EIKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TT 76 (295)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eC
Confidence 3458999998 9999999999999998 99999987311 10 011211110 011221 33
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~ 167 (256)
+. +++++||+||.+.. ++..+...+...+.++. |++++ +||.+.+. .+++.+... .+
T Consensus 77 ~~-~~~~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~~--~~ 134 (295)
T PLN02545 77 NL-EELRDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASATQ--RP 134 (295)
T ss_pred CH-HHhCCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CC
Confidence 43 57899999999852 22445566667777776 55544 57766652 233443332 34
Q ss_pred CcEEEE
Q 025206 168 KKLFGV 173 (256)
Q Consensus 168 ~kviG~ 173 (256)
.+++|+
T Consensus 135 ~r~~g~ 140 (295)
T PLN02545 135 QQVIGM 140 (295)
T ss_pred cceEEE
Confidence 677776
No 78
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.45 E-value=3.9e-06 Score=75.23 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc-cCCCcEEEEec----CCccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~eal~~aDvVI 101 (256)
.++|.|+||+|++|++++..|+.+|+ +|++++.+... .....+... ....+++.+.+ ...+.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 46899999999999999999999998 89888776321 111122111 00112222221 123556788999999
Q ss_pred EecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206 102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS 145 (256)
Q Consensus 102 i~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t 145 (256)
++|+......... .+.+..|+.....+++.+.+. ... .+|++|
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 9998543211222 356788999999999998876 433 444444
No 79
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.43 E-value=1e-06 Score=83.46 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=99.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh------------HHHHHh---cccCCCcEEEEecC-
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG------------VAADVG---HINTRSEVAGYMGN- 87 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g------------~~~dl~---~~~~~~~v~~~~~t- 87 (256)
+++||.|+||+||||++++..|+.+|+ +|+++|... . .. ....+. +.. ...++.+.++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl 122 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI 122 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence 557999999999999999999999998 999998431 0 00 000111 000 0112222211
Q ss_pred ---CccccccC--CCCEEEEecCCCCCC-C-CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------C---C
Q 025206 88 ---DQLGQALE--DSDVVIIPAGVPRKP-G-MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------P---V 148 (256)
Q Consensus 88 ---~d~~eal~--~aDvVIi~ag~~~~~-g-~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN------P---v 148 (256)
..+.++++ ++|+||++|+....+ . .+. ...+..|+.....+++.+.+++....++.+|. | +
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 12334455 489999998653221 1 111 23356799999999999988876545554441 1 1
Q ss_pred CCchHH-HHHHH-HHh--CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 149 NSTVPI-AAEVF-KKA--GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 149 d~~~~i-~~~~~-~~~--~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+.. ++ ..+.. ... .-..|...+|.+.+....+....++..|++..-++ ..|+|.+
T Consensus 203 ~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~ 262 (442)
T PLN02572 203 EEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 262 (442)
T ss_pred ccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 100 00 00000 000 00234457777655555566666788898887777 5689976
No 80
>PLN02650 dihydroflavonol-4-reductase
Probab=98.43 E-value=4e-06 Score=76.46 Aligned_cols=175 Identities=14% Similarity=0.067 Sum_probs=96.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhc-ccCCCcEEEEec----CCccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYMG----NDQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~-~~~~~~v~~~~~----t~d~~eal~~aDvVI 101 (256)
.++|.|+||+|++|++++..|+..|+ +|++++.+... ....++.. ......++.+.+ ...+.++++++|+||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 45899999999999999999999998 99888765311 11112211 111112222221 123456788999999
Q ss_pred EecCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHH-HHHHHHHhCC---------CCCCcE
Q 025206 102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI-AAEVFKKAGT---------YNEKKL 170 (256)
Q Consensus 102 i~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i-~~~~~~~~~~---------~~~~kv 170 (256)
++|+.......+ ..+.+..|+.....+++.+.+.+.-..+|++|.....-..- -...+.+... .++...
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~ 162 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWM 162 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccch
Confidence 999753221112 23567889999999999998765223555554321100000 0000000000 001113
Q ss_pred EEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 171 FGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 171 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+|.+.+....+-...++..|++..-++ ..|+|++
T Consensus 163 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~ 197 (351)
T PLN02650 163 YFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF 197 (351)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence 444444444444455667788776666 5688864
No 81
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.43 E-value=3.5e-06 Score=76.20 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--ch--hHHHHHhcccCCCcEEEEe----cCCccccccCCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSD 98 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~--g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aD 98 (256)
..++|+|+||+||||+.++..|+++|+ +|+--=++. .+ ....+|.... .++..+. ....+.+++++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999999 777664432 11 2344444322 1233332 1234668999999
Q ss_pred EEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206 99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 99 vVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
.|+++|....-... ...+++.-+++...++.+.++++. ...=+++|+..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~ 130 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST 130 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence 99999975432222 244678888999999999999887 33333455443
No 82
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.43 E-value=1.7e-06 Score=83.07 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh-HHHH--------Hh---cccC--CCcEEEEecCCcccccc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT--RSEVAGYMGNDQLGQAL 94 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g-~~~d--------l~---~~~~--~~~v~~~~~t~d~~eal 94 (256)
+||+|||+ |.+|+.+|..|+..|+ +|+++|.+.... ...+ +. .... ..+++. ++++.+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 58999998 9999999999999999 999999983211 1000 00 0000 012332 34667789
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
++||+|+.+.. ++..+.+.+...+.+.+++.. |+.||.++.. .+++.+.. -.+.++++.
T Consensus 79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~---~s~l~~~~--~~~~r~~~~ 137 (495)
T PRK07531 79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFL---PSDLQEGM--THPERLFVA 137 (495)
T ss_pred cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCC---HHHHHhhc--CCcceEEEE
Confidence 99999999852 124455666667777775443 3477877753 23444433 235566665
No 83
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.41 E-value=3.2e-06 Score=75.02 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=94.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-hHHHHHhcccCCCcEEEEec----CCccccccCC--CCEE
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDVV 100 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~--aDvV 100 (256)
||.|+||+|++|+.++..|+..+...+|+++|.... . ....++... ..++.+.+ ..++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999999988763238898886421 1 111122111 11222221 1234456666 8999
Q ss_pred EEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 101 Ii~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-----d~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
|++|+.... ........+..|......+++.+.+...+..++.+|... ....++ ......++...+|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence 999975421 122344567889999999999988875555566555310 000000 00111223334455
Q ss_pred eechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+.....++-..+++..+++..-++ ..++|.+
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 443444444455666777666666 4477743
No 84
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.41 E-value=3.1e-06 Score=83.98 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=105.4
Q ss_pred ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---c-c
Q 025206 17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---Q-L 90 (256)
Q Consensus 17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d-~ 90 (256)
+.|++.-+-.+.|||.|+||+||+|++++..|+.. |+ +|+.+|.+... . .++... ..++.+.++ . + +
T Consensus 304 ~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~~---~~~~~~~gDl~d~~~~l 376 (660)
T PRK08125 304 LNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLGH---PRFHFVEGDISIHSEWI 376 (660)
T ss_pred ecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcCC---CceEEEeccccCcHHHH
Confidence 45555555556789999999999999999999875 67 99999976321 1 111110 123322211 1 1 3
Q ss_pred ccccCCCCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch----HHHHHHHHH--h
Q 025206 91 GQALEDSDVVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKK--A 162 (256)
Q Consensus 91 ~eal~~aDvVIi~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~----~i~~~~~~~--~ 162 (256)
.++++++|+||++|+.... ...+..+.+..|+....++++.+.++.+ .+|.+|.. .+.. ....|-... .
T Consensus 377 ~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~--~~V~~SS~-~vyg~~~~~~~~E~~~~~~~ 453 (660)
T PRK08125 377 EYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNK--RIIFPSTS-EVYGMCTDKYFDEDTSNLIV 453 (660)
T ss_pred HHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCC--eEEEEcch-hhcCCCCCCCcCcccccccc
Confidence 4567899999999975432 2234566778899999999999998763 45545431 1000 000000000 0
Q ss_pred CCC-CCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 163 GTY-NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 163 ~~~-~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+.. ++....|.+.+-..++-...++..+++..-++ ..|+|.+
T Consensus 454 ~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 454 GPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred CCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 000 12235666655455555556777788877777 4588864
No 85
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.40 E-value=8.6e-06 Score=73.66 Aligned_cols=114 Identities=20% Similarity=0.415 Sum_probs=77.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--c--------CCCcEEEEecCCccccccCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N--------TRSEVAGYMGNDQLGQALEDS 97 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--~--------~~~~v~~~~~t~d~~eal~~a 97 (256)
++||+|+|+ |.=|.++|..|+.+++ +|+|+..++ ..+.++.+. . ++..++ .++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence 479999998 9999999999999998 999998873 222333322 1 122333 267899999999
Q ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC---CCCCchHHHHHHHHHhCCCCCCc
Q 025206 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN---PVNSTVPIAAEVFKKAGTYNEKK 169 (256)
Q Consensus 98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN---Pvd~~~~i~~~~~~~~~~~~~~k 169 (256)
|+||+.. | ...++++++++..+- ++.+++.+|- |-.. ..+++++++. +|..+
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~ 128 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP 128 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe
Confidence 9999984 2 344666777775444 6677777763 3322 2456666655 45444
No 86
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.37 E-value=5.7e-06 Score=75.38 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC--CCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~--~aDvVI 101 (256)
++||.|+||+|++|++++..|..+|. ..++++|.....+....+.+......+....+ ..++.++++ ++|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 35899999999999999999999886 24666775421111111211100011221111 123344555 489999
Q ss_pred EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCCCCchHH--HHHHHHHhCCCCCCc
Q 025206 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPI--AAEVFKKAGTYNEKK 169 (256)
Q Consensus 102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-~~iiv~tNPvd~~~~i--~~~~~~~~~~~~~~k 169 (256)
++||..... .....+.+..|+.....+++.+.++. +. ..++.+|... +.... ......+.....+..
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~~~~~p~s 158 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTETTPYAPSS 158 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCCCCCCCCC
Confidence 999864321 12345677889999999999987652 11 2455454321 00000 000000011122334
Q ss_pred EEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
.+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus 159 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 159 PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY 194 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 4555555555666666777787766666 5688865
No 87
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.37 E-value=4.2e-06 Score=78.06 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC------------CCcEEEEecCCccccccCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~eal~~ 96 (256)
|||+|||+ |+||..+|..++. |+ +|+.+|+++.+ ...+.+... ....+. ..+++..++.++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRD 73 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcC
Confidence 58999998 9999999987774 77 99999998311 111111000 011121 124455677899
Q ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCC
Q 025206 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS 150 (256)
Q Consensus 97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~ 150 (256)
||+||++.+.|........ ++..+++.++.|.+..|+.++|+- |-|.+.
T Consensus 74 ad~vii~Vpt~~~~k~~~~-----dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYF-----NTSSVESVIKDVVEINPYAVMVIKSTVPVGF 123 (388)
T ss_pred CCEEEEeCCCCCccCCCCc-----ChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence 9999999887743221112 234455555666554455555444 457664
No 88
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.36 E-value=2.2e-06 Score=77.36 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=70.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi~a 104 (256)
|||.|+||+|++|++++..|..+|+ +|+.++++.... ..+.+.. ++...+ ..++.++++++|+||+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~----v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG----AELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC----CEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 5899999999999999999999998 999998763211 1112111 221111 234567899999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.... +..+....|......+++.+++.+.+ .+|.+|
T Consensus 73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 64321 12234556777888899988887754 445444
No 89
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.33 E-value=8.7e-06 Score=74.26 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=94.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEec----CCccccccCC--CCE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDV 99 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~--aDv 99 (256)
.++|.|+||+|++|++++..|++.|+ +|+.+|.+... .....+.. . .++....+ ..++.+.+++ .|+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 36899999999999999999999998 99999876321 11111111 0 01211111 1133344554 599
Q ss_pred EEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206 100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177 (256)
Q Consensus 100 VIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld 177 (256)
||++|+.+... ..+....+..|+.....+++.+.+.+....+|++|...-.-.+-...-..+....++...+|.+..-
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~ 158 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKAC 158 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHH
Confidence 99999854221 1234566788999999999998776533356666542100000000000001112334456665443
Q ss_pred HHHHHHHHHHHc-------CCCCCcee-EEEEeCC
Q 025206 178 VVRAKTFYAGKA-------NVNVAEVN-VPVVGGH 204 (256)
Q Consensus 178 s~R~~~~la~~l-------~v~~~~v~-~~v~G~H 204 (256)
..++-..+++.+ +++...++ ..++|.+
T Consensus 159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 444444455544 55555565 4577753
No 90
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.33 E-value=5.2e-06 Score=75.62 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVI 101 (256)
+|||.|+||+|++|++++..|+.. ++ +|+.+|.... ...++... ..++.+.++ ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 468999999999999999999875 56 8999986421 11112111 123322211 12234568999999
Q ss_pred EecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 102 IPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 102 i~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
++|+.... ...+....+..|+....++++.+.+.. ..+|.+|.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 99875322 223345556778888889999888764 35555553
No 91
>PLN02214 cinnamoyl-CoA reductase
Probab=98.30 E-value=1.1e-05 Score=73.76 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=74.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV 100 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV 100 (256)
+++|.|+||+|++|++++..|+.+|+ +|+.++.+... .....+... ...+....+ ..++.++++++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 45899999999999999999999998 89988775211 111122111 012222221 12455678899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|++|+... ....+.+..|+.....+++.+.+.... .+|++|
T Consensus 86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S 126 (342)
T PLN02214 86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS 126 (342)
T ss_pred EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 99998542 234566788999999999999887644 444444
No 92
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=3.1e-06 Score=75.38 Aligned_cols=164 Identities=17% Similarity=0.108 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccC-CCcEEEEecCCcccccc--CCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINT-RSEVAGYMGNDQLGQAL--EDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~-~~~v~~~~~t~d~~eal--~~aDvVIi~a 104 (256)
|+|.|+|++|+|||+.+..|++.|+ +|+.+|.... ...+.+-.+..+ ...+.. ..-+.+.+ ...|.||+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999999 9999998621 111111110110 011111 00112222 3789999998
Q ss_pred CCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206 105 GVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-----SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177 (256)
Q Consensus 105 g~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-----tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld 177 (256)
|...-+. +..+.++..|+--...+++.|.+++.+-+|... .+|... || +| ... ..|.+-.|-|.|-
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E---~~~-~~p~NPYG~sKlm 148 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE---TSP-LAPINPYGRSKLM 148 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC---CCC-CCCCCcchhHHHH
Confidence 8643221 347889999999999999999999977665432 244442 22 11 111 3466778888887
Q ss_pred HHHHHHHHHHHcCCCCCceeEE-EEeCC
Q 025206 178 VVRAKTFYAGKANVNVAEVNVP-VVGGH 204 (256)
Q Consensus 178 s~R~~~~la~~l~v~~~~v~~~-v~G~H 204 (256)
+.++.+.+++..+..-.-.+.+ +.|-|
T Consensus 149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 149 SEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 8888888888888666555644 77755
No 93
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.27 E-value=6.3e-06 Score=73.72 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi~a 104 (256)
|||.|+||+|++|++++..|+.+|. +|+++|.+.... .++.+.. ++... ...++.++++++|+||+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~----~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLD----VEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCC----ceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5899999999999999999999997 999999863211 1111111 11111 1124556788999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.......+..+....|+.....+++.+.+.+.. .+|++|
T Consensus 73 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 73 ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred eecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 7543223445667788999999999988876533 444444
No 94
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.27 E-value=4.2e-06 Score=77.38 Aligned_cols=170 Identities=11% Similarity=0.014 Sum_probs=95.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII 102 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi 102 (256)
+.|||.|+||+|+||++++..|...|+ +|+.+|..... . +...... ...+.+ ...+.++++++|+||+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~~--~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMFC--HEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---ccccccc--ceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 457999999999999999999999998 99999975211 0 0000000 111111 1123345679999999
Q ss_pred ecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCc-hHHHH---HHHHHhC-CCCCCcEEEEe
Q 025206 103 PAGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-VPIAA---EVFKKAG-TYNEKKLFGVT 174 (256)
Q Consensus 103 ~ag~~~~~g---~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~-~~i~~---~~~~~~~-~~~~~kviG~t 174 (256)
+|+.....+ .+....+..|+.....+++.+++.... .+|++|...-.- ..... -+..... ..++...+|.+
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE 170 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence 997532111 122334678999999999999887655 344454321000 00000 0000000 02233344544
Q ss_pred echHHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206 175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA 205 (256)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg 205 (256)
.....++-...++..|++..-++ ..++|.++
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 44444444445666788777777 45888763
No 95
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.26 E-value=6.3e-06 Score=74.68 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=75.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV 100 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV 100 (256)
+.++|.|+||+|++|++++..|+.+|...+|+++|.+.... ...++.. ..+..+.+ ..++.++++++|+|
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 34689999999999999999999876223899998763221 1111211 12222221 12345667889999
Q ss_pred EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|++||....+ ..+..+.+..|+.....+++.+.+.+.. .+|++|
T Consensus 79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999864322 2345577889999999999999876543 455554
No 96
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.25 E-value=1.1e-05 Score=73.45 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=95.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC--CCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~--~aDvVIi 102 (256)
|||.|+||+|++|++++..|+.+|. ..++.+|.....+....+.+......+..+.+ ..++.++++ ++|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999998885 24666775321111111111100111221111 113334454 4899999
Q ss_pred ecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCCCCchHHH--H--------HHHHHh
Q 025206 103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIA--A--------EVFKKA 162 (256)
Q Consensus 103 ~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-~~iiv~tNPvd~~~~i~--~--------~~~~~~ 162 (256)
+|+.... ......+.+..|+.....+++.+.++. .. ..+|.+|-. .+..... - ..+.+.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCccccccccccCCCcccc
Confidence 9986432 112345678899999999999988752 11 245444421 1000000 0 000011
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
..+.+....|.+.....++-..+++..+++..-++ ..|+|.+
T Consensus 159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 11334456676655555565666777888776666 4588865
No 97
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.23 E-value=1.3e-05 Score=75.13 Aligned_cols=118 Identities=25% Similarity=0.309 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCcccc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ 92 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~e 92 (256)
|||+|||. |++|.++|..|+..|+ +|+++|+++.+ ..++..... ..+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999998 9999999999999998 99999997321 112221100 112332 346667
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCchHHHHHHHH
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVFK 160 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~~~~i~~~~~~ 160 (256)
++++||+||++.+.|..... .. +...+.+.++.+.++. ++.+++..| -|.+..-.+...+.+
T Consensus 73 ~~~~advvii~vpt~~~~~~-~~-----d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~ 136 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG-SP-----DLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILE 136 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC-Cc-----ChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHH
Confidence 88999999999988764321 11 2344555556666554 455555443 455543333333433
No 98
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.20 E-value=3.4e-05 Score=69.39 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhc-ccCCCcEEEEec----CCccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYMG----NDQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~-~~~~~~v~~~~~----t~d~~eal~~aDvVI 101 (256)
.++|.|+||+|++|++++..|+.+|+ +|++.+.+... .....+.. .....+++...+ ..++.++++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 46899999999999999999999998 88887665321 11111111 111112332221 123455678899999
Q ss_pred EecCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 102 IPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 102 i~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++||..... . ......+..|+.....+.+.+.++.....+|++|
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 999854211 1 2234567889998999999887764223455554
No 99
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.20 E-value=9.2e-06 Score=72.09 Aligned_cols=164 Identities=17% Similarity=0.114 Sum_probs=94.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-CCcEEEEecCCccccccCCC-CEEEEecCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGVP 107 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~a-DvVIi~ag~~ 107 (256)
+|.|+|++||||++++..|+++|+ +|+.+|.........+ .+... ...+.. .....+.++++ |.||++|+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEccccC
Confidence 599999999999999999999998 9999997632111111 11000 000100 11223455666 9999999876
Q ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch-H----HHHHHHHHhCCCCCCcEEEEeechHH
Q 025206 108 RKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-P----IAAEVFKKAGTYNEKKLFGVTTLDVV 179 (256)
Q Consensus 108 ~~~g~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~-~----i~~~~~~~~~~~~~~kviG~t~lds~ 179 (256)
..++..+ .++...|+...+++++.+.+... ..++..| .....- . .+++-. .. ..|..-.|.+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-~~~v~~s-s~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E 150 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV-KRFVFAS-SVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE 150 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEeC-CCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence 5444322 35788999999999999998332 2444433 222100 0 001100 11 111123455544444
Q ss_pred HHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 180 RAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 180 R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+.-...++..+++..-++ ..++|.+
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~ 176 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPG 176 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 444444455678888888 5699865
No 100
>PLN02778 3,5-epimerase/4-reductase
Probab=98.19 E-value=3.3e-05 Score=69.34 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=63.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc--CCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~aDvVIi~a 104 (256)
..|||.|+||+||+|++++..|..+|+ +|++...+.. |.. .+..++ .++|+||++|
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~-----~~~---------------~v~~~l~~~~~D~ViH~A 65 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLE-----NRA---------------SLEADIDAVKPTHVFNAA 65 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccC-----CHH---------------HHHHHHHhcCCCEEEECC
Confidence 347999999999999999999999998 8775432210 000 001112 2689999999
Q ss_pred CCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206 105 GVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN 138 (256)
Q Consensus 105 g~~~~~g-----~~r~d~~~~N~~i~~~i~~~i~~~~p~ 138 (256)
+....+. .+..+.+..|+.....+++.+++.+..
T Consensus 66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8643221 245677889999999999999988643
No 101
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=98.19 E-value=4.9e-06 Score=74.51 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~ 106 (256)
|||.|+||+||+|++++..|..+| +|+.+|.... ....|+.+ ...+.++++ ++|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999998887 5777776421 00112221 112334455 58999999976
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 107 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
.... ..+.......|+.....+++.+.+.+. .+|.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 4321 123344457899999999999988753 455444
No 102
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.18 E-value=1.8e-05 Score=67.24 Aligned_cols=93 Identities=24% Similarity=0.335 Sum_probs=64.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
||+++|+|+ |.+|+.++..+...|+ ||.+-..+..+ ..+..+.- .+.. . +.++|.+.||+||.+.
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~-----~i~~---~-~~~dA~~~aDVVvLAV 68 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGP-----LITG---G-SNEDAAALADVVVLAV 68 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhcc-----cccc---C-ChHHHHhcCCEEEEec
Confidence 578999997 9999999999999999 99988665322 22222221 2322 2 3367999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
| .+.+.++.+.+...-.+-++|-.|||.
T Consensus 69 --P--------------~~a~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 69 --P--------------FEAIPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred --c--------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence 2 223445555555544466888899995
No 103
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.18 E-value=1.7e-05 Score=71.51 Aligned_cols=100 Identities=21% Similarity=0.363 Sum_probs=63.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhccc------CCCcEEEEecCCccccccCCCCE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN------TRSEVAGYMGNDQLGQALEDSDV 99 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~------~~~~v~~~~~t~d~~eal~~aDv 99 (256)
||||+|||+ |.+|+.++..|+..|+ +|.++|.++.. ....+..+.. .+..+.. ..++.+.+++||+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 479999998 9999999999999998 99999987321 1111100000 0111222 2355567889999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
||++... ..+.++++.+..+. |+.++|..+|.++
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9999531 12344555565554 6778888877544
No 104
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.17 E-value=1.2e-05 Score=75.57 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCc
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQ 89 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d 89 (256)
|+++||+|||. |++|.++|..|+..|+ +|+.+|+++.+-. .+..... ...+.. ++
T Consensus 1 m~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~--~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~- 71 (415)
T PRK11064 1 MSFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVD--TINRGEIHIVEPDLDMVVKTAVEGGYLRA---TT- 71 (415)
T ss_pred CCccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHCCCCCcCCCCHHHHHHHHhhcCceee---ec-
Confidence 34679999998 9999999999999998 9999999842211 1221110 011211 22
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCCc
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST 151 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~~ 151 (256)
.+++||+||++.++|.++.. .. ++..+.+.++.|.++. ++.++|.- |-|....
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 24689999999988754321 22 2344556666676665 44555444 4566643
No 105
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.17 E-value=4.7e-05 Score=68.07 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=69.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-----CCcEEEE-ecCCccccccCCCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAGY-MGNDQLGQALEDSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-----~~~v~~~-~~t~d~~eal~~aDvVIi 102 (256)
|||+|+|+ |.+|..++..|...|+ +|.+++. ... ...+.+... ....... ...++..+..+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKR--AKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHH--HHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 68999998 9999999999999998 9999997 311 111221110 0011000 002243445689999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG 172 (256)
+...+ .+.++++.+..+. ++..|+.+.|.++.. +.++.. +|++++++
T Consensus 75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~-----~~l~~~--~~~~~v~~ 122 (305)
T PRK12921 75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQL-----EQLEPY--FGRERVLG 122 (305)
T ss_pred Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChH-----HHHHHh--CCcccEEE
Confidence 85322 1234455555543 567788888998731 233333 67777774
No 106
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.16 E-value=2.2e-05 Score=64.58 Aligned_cols=93 Identities=28% Similarity=0.330 Sum_probs=66.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEEecCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi~ag~ 106 (256)
|+|+||+|++|+.++..|+.+|+ +|+++-+++.+. .+ ...++...++ .++.++++++|.||+++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999997 999998764321 11 1234433322 2456789999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.+ + ...++.+++.+++.+.. .++++|
T Consensus 71 ~~~------~-----~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK------D-----VDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT------H-----HHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc------c-----ccccccccccccccccc-cceeee
Confidence 543 1 56678888888887644 444444
No 107
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.16 E-value=4.9e-05 Score=68.34 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=71.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc-cCCCcEEEEec----CCccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~eal~~aDvVI 101 (256)
.++|.|+||+|++|++++..|+..|+ +|++...+... .....+... .....++.+.+ ...+.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 35899999999999999999999998 88866544211 111222111 11112333221 123456678999999
Q ss_pred EecCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 102 IPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 102 i~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++|+..... .....+++..|+.....+++.+.+...-..+|.+|
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S 127 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS 127 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 999853211 11223457778999999999887653112455444
No 108
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.15 E-value=1.6e-05 Score=77.21 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=72.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhc-----cc--CCCcEEEEecC----Ccccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-----IN--TRSEVAGYMGN----DQLGQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~-----~~--~~~~v~~~~~t----~d~~eal 94 (256)
.+.|.|+||+|++|..++..|+..|+ +|++++++. +......+.+ .. ...++..+.++ .++.+++
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 35799999999999999999999998 999998873 2211112211 00 00122222211 2345568
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
.++|+||+++|.......+....+..|......+++.+.+.+.. .||++|
T Consensus 158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 89999999998653321122234556777788888888776544 455554
No 109
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.14 E-value=5.2e-05 Score=67.64 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC---CCcEEEE-ecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAGY-MGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~---~~~v~~~-~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|+|+ |.+|..++..|.+.|+ +|.++|.+... ...+..... ....... ....+..+ ++++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAH--LDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHH--HHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 58999998 9999999999999998 99999985311 111111111 0011100 01233333 48999999995
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~ 150 (256)
... -+.++++.+..+- ++..|+...|.++.
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 321 1234455555443 66788889999874
No 110
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.14 E-value=8.7e-06 Score=71.58 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=66.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP 110 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~ 110 (256)
|.|+||+|++|++++..|+..|+ +|+.++++...... +... .+....+ ..+.++++++|+||++|+.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999999998 99999986321100 0000 0111111 23356789999999999875432
Q ss_pred C-C---CHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206 111 G-M---TRDDLFNINAGIVKDLCSAIAKYCP 137 (256)
Q Consensus 111 g-~---~r~d~~~~N~~i~~~i~~~i~~~~p 137 (256)
+ . ...++...|+...+.+++.+.++..
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 2 1 2345667789999999999988764
No 111
>PLN02583 cinnamoyl-CoA reductase
Probab=98.13 E-value=5.8e-05 Score=67.44 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch----hHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV 100 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~----g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV 100 (256)
++|.|+||+|++|++++..|+.+|+ +|++++.+... ....++... ..+++.+.+ ..++.+++.++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999998 99988764211 111222110 112332221 12345688999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++.++.+........+.+..|+.....+.+.+.+...-..+|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 987754432212235678889999999999988763112455444
No 112
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.13 E-value=3.3e-05 Score=69.77 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C-chhHHHHHhcccCCCcEEEEecC-C---ccccccC--CCCEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N-TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVV 100 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~--~aDvV 100 (256)
|||.|+||+|++|++++..|+.+|+ +|+++|.. + .......+.+.. ...+..+.++ + .+.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999999999998 99999864 1 111111121110 0011111111 1 2233444 68999
Q ss_pred EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|++|+..... .....+.+..|+.....+++.+++.... .+|.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998764321 1234567888999999999998877533 454444
No 113
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.13 E-value=4.1e-05 Score=69.94 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=93.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEecC----CccccccCCCCEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV 100 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvV 100 (256)
..|||.|+||+|++|++++..|+++|. +|++++.+.... ...++.. ...++.+.++ ..+.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 457999999999999999999999998 899887653211 1112211 1123322211 1244567889999
Q ss_pred EEecCCCCCC---C-CCHHH-----HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch--------HHHHHH----H
Q 025206 101 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F 159 (256)
Q Consensus 101 Ii~ag~~~~~---g-~~r~d-----~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~--------~i~~~~----~ 159 (256)
|++|+..... . .+..+ .+..|+.....+++.+.++..-..+|++|.-.-... ..+.+- .
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864321 1 12222 233345777888888877642224555543110000 000000 0
Q ss_pred HH-hCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 160 KK-AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 160 ~~-~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
.. ....++...+|.+.+...++-...++..+++..-++ ..|+|.+
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 00 000112224555555555555566777787766666 4577854
No 114
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.13 E-value=2.5e-05 Score=72.19 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCC-----ccEEEEEeCCCc---hhHHHHHhcc--c--------CCCcEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGHI--N--------TRSEVA 82 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~-----~~eV~LiD~~~~---~g~~~dl~~~--~--------~~~~v~ 82 (256)
|-+.+.+++||+|||+ |.-|+++|..|..++. ..+|.|+..++. +..+.++++. . ++..+.
T Consensus 4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE
Confidence 5556667789999998 9999999999998861 128999977642 1233444421 1 123344
Q ss_pred EEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 025206 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK--YC-PNAIVNMIS 145 (256)
Q Consensus 83 ~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~--~~-p~~~iiv~t 145 (256)
. ++|+.+++++||+||++.. ...+++++++++. +- ++.++|.++
T Consensus 83 ~---tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 83 A---VSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred E---ecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 3 4577789999999999842 2335566666665 32 344555554
No 115
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.13 E-value=3.8e-05 Score=69.91 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=62.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-------------CCcEEEEecCCcccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-------------RSEVAGYMGNDQLGQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-------------~~~v~~~~~t~d~~eal 94 (256)
+|||+|||+ |.+|..++..|...|+ +|.++|.++.. ..+..... +.++. .+++. +++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ 71 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIA---FSTDP-AAL 71 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeE---eccCh-hhc
Confidence 368999998 9999999999999998 99999975311 11111110 00111 13343 567
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~ 150 (256)
+++|+||++...+. ..++++.+.... ++.+++..+|..+.
T Consensus 72 ~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 72 ATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred cCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 89999999964321 123344555544 66778778898773
No 116
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.11 E-value=7.8e-06 Score=60.61 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=61.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEE-eCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~-~~eV~Li-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
||+|||+ |.+|++++..|...|. ..+|.++ +.+.. ...++.+.. . .... ..+..++++++|+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 7999998 9999999999999982 2388866 77632 222332211 1 1211 2244678899999999952
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
| ..+.++++.+....++.++|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 1245666666555578888888876
No 117
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.10 E-value=2.1e-05 Score=71.49 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhc-c--cCCCcEEEEecC----CccccccCC--
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH-I--NTRSEVAGYMGN----DQLGQALED-- 96 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~-~--~~~~~v~~~~~t----~d~~eal~~-- 96 (256)
++|.|+||+|++|++++..|+..|+ +|+++|.... ......+.. . .....++...++ ..+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999998 9999987631 111111110 0 001112222211 123445564
Q ss_pred CCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC-CC-cEEEEec
Q 025206 97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC-PN-AIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~-p~-~~iiv~t 145 (256)
.|+||++|+...... ......+..|+.....+++.+.+.+ .. ..++.+|
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~S 131 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQAS 131 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEec
Confidence 699999998643211 1233445667778888999888765 22 2454443
No 118
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=98.06 E-value=1.5e-05 Score=70.24 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=66.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCC--CEEEEecCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP 107 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a--DvVIi~ag~~ 107 (256)
||.|+||+|++|++++..|...|+ +|++++... .|+.+ ..++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999999998 999987641 22222 11334456655 9999999864
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 108 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
.... ......+..|+.....+++.+.+... .+|++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 23455677888889999998877653 455554
No 119
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.06 E-value=6.7e-05 Score=74.53 Aligned_cols=173 Identities=14% Similarity=0.040 Sum_probs=94.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccccc--CCCCEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--EDSDVV 100 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~~aDvV 100 (256)
+++||.|+||+||||++++..|+.++...+|+.+|..........+........++...++ .| +.+.+ .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 4579999999999999999999987432389999864211111111110001123322221 11 11222 689999
Q ss_pred EEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHH-----H--HHHhCCCCCCcEE
Q 025206 101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-----V--FKKAGTYNEKKLF 171 (256)
Q Consensus 101 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~-----~--~~~~~~~~~~kvi 171 (256)
|++|+...... ....++...|+.....+++.+++.+.-..+|.+|. .. +... . ........|....
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS-~~----vyg~~~~~~~~~~~E~~~~~p~~~Y 159 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST-DE----VYGETDEDADVGNHEASQLLPTNPY 159 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc-hH----HhCCCccccccCccccCCCCCCCCc
Confidence 99998653221 23345678899999999999988763335555553 10 0000 0 0000001122334
Q ss_pred EEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
|.+.+...++-...++..+++..-++ ..|+|.+
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~ 193 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN 193 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence 44444444444444555677666666 4577765
No 120
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=98.05 E-value=8.2e-06 Score=72.11 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=69.4
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
.........||+|+||+|||||+++..|+..|+ +|+..|.... +....++|.......+... .......+..+|-|
T Consensus 20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~I 95 (350)
T KOG1429|consen 20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQI 95 (350)
T ss_pred hcccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhh
Confidence 333444568999999999999999999999998 9999998632 2222333332211222111 11223467899999
Q ss_pred EEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++.|.....++ .+..+....|.-.+.......++.+ +.++.+|
T Consensus 96 yhLAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS 140 (350)
T KOG1429|consen 96 YHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS 140 (350)
T ss_pred hhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence 99886543332 2333333344333344444444443 4555554
No 121
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.04 E-value=2.9e-05 Score=70.03 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=58.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
+.|||+|||+ |.+|.+++..|...|+ +|.++|++.. .++.++++++|+||++..
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp- 56 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS- 56 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence 3579999998 9999999999999998 9999998631 133467789999999852
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN 146 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tN 146 (256)
...++++++.+..+ .++.+++..|+
T Consensus 57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 57 ---------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 12345555666543 46777877776
No 122
>PRK07201 short chain dehydrogenase; Provisional
Probab=98.02 E-value=6.6e-05 Score=74.03 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc--CCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc--------cccccCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ--------LGQALEDS 97 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~--~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d--------~~eal~~a 97 (256)
|||.|+||+|++|++++..|+. .+. +|++++.+.......++.......+++...++ .+ ..+.++++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~ 78 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI 78 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence 5899999999999999999984 566 99999986322221222111000122222211 01 11223899
Q ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|+||++|+.... .....+....|+.....+++.+.+.... .++.+|
T Consensus 79 D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~S 124 (657)
T PRK07201 79 DHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAA-TFHHVS 124 (657)
T ss_pred CEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEe
Confidence 999999986432 2344556778999999999998876543 344444
No 123
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.01 E-value=2.5e-05 Score=63.95 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=58.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
|+||++||. |.+|+.++..|+..|+ +|..||+++ ....++.+.. .+. ..++.+++++||+|+.+...
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~~- 67 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVPD- 67 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SSS-
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeeccc-
Confidence 579999998 9999999999999999 999999863 2233344322 232 23567889999999998521
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--HHHhCCCcEEEEecCCCC
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSA--IAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~--i~~~~p~~~iiv~tNPvd 149 (256)
-+.++++... +....+.+.+++-++.++
T Consensus 68 --------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 68 --------------DDAVEAVLFGENILAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp --------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred --------------chhhhhhhhhhHHhhccccceEEEecCCcc
Confidence 2345566665 555554444444444443
No 124
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.99 E-value=0.0002 Score=66.47 Aligned_cols=149 Identities=23% Similarity=0.170 Sum_probs=84.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCC-cEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~-~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|+||.|||+ |+||+.+|..|++++. .+|++.|+...+ ..+.+..+..... .+.. .+...+.+++++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence 579999998 9999999999999985 599999987321 1222222111110 1111 012245678899999999975
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE---e---echHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---T---TLDVV 179 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~---t---~lds~ 179 (256)
... +. .+++++.+.+-+ ++-.|+-.+.. +-..+..++.| +.++ + -++..
T Consensus 78 ~~~------------~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~nv 132 (389)
T COG1748 78 PFV------------DL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITNV 132 (389)
T ss_pred chh------------hH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHHH
Confidence 331 22 445555555543 45566644432 23334444443 3334 1 13333
Q ss_pred HHHHHHHHHcCCCCCceeEEEE--eCCC
Q 025206 180 RAKTFYAGKANVNVAEVNVPVV--GGHA 205 (256)
Q Consensus 180 R~~~~la~~l~v~~~~v~~~v~--G~Hg 205 (256)
-..+. ++++.-..++++.++. |+||
T Consensus 133 ~a~~a-~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 133 LAAYA-AKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHH-HHHhhccccEEEEEEecCCCCC
Confidence 33444 4444435667766654 4896
No 125
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.99 E-value=5.4e-05 Score=70.59 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hh--HHHHHhcccCCCcEEEEec----CCcccc
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG--VAADVGHINTRSEVAGYMG----NDQLGQ 92 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g--~~~dl~~~~~~~~v~~~~~----t~d~~e 92 (256)
|-+.+.+.+||.|+||+|++|+.++..|+.+|+ +|++++.+.. .. ...++.... ..++...+ ..++.+
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADSLRK 128 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhc--CCceEEEeeCCCHHHHHH
Confidence 666666778999999999999999999999998 9999987631 10 011111100 01222211 123444
Q ss_pred ccC----CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 93 ALE----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 93 al~----~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+++ ++|+||++++.+... ..+.+..|......+++.+++.+.. .++++|
T Consensus 129 ~~~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred HHHHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 555 599999988753211 1233456777778888888777644 344454
No 126
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=4.9e-05 Score=69.06 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--------cC--CCcEEEEecCCccccccCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NT--RSEVAGYMGNDQLGQALED 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--------~~--~~~v~~~~~t~d~~eal~~ 96 (256)
.+|||+|||+ |.+|..++..|+..|+ +|.++|.+.... .++... .. +..+.. +.++.+++++
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~ 74 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFA--AALAAERENREYLPGVALPAELYP---TADPEEALAG 74 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcC
Confidence 3679999998 9999999999999998 999999863211 112211 10 111222 3456677899
Q ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
+|+||++.... .++++++.+ .|..+++.++|.++
T Consensus 75 aD~Vi~~v~~~----------------~~~~v~~~l---~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 75 ADFAVVAVPSK----------------ALRETLAGL---PRALGYVSCAKGLA 108 (328)
T ss_pred CCEEEEECchH----------------HHHHHHHhc---CcCCEEEEEeeccc
Confidence 99999985211 123333332 35667777888643
No 127
>PRK06194 hypothetical protein; Provisional
Probab=97.98 E-value=0.00016 Score=63.66 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE----- 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~----- 95 (256)
+.+++.|+||+|++|++++..|+.+|. +|+++|.+. +.....++.... .++..+.++ + ++.++++
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 999999863 222233333211 123222211 1 2222222
Q ss_pred --CCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCC-----cEEEEecCCCCCchHHHHHH
Q 025206 96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 96 --~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~-----~~iiv~tNPvd~~~~i~~~~ 158 (256)
..|+||++||..... ..+. ...+..|+... +.+.+.+.+.+.. +.++++|.....
T Consensus 81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-------- 152 (287)
T PRK06194 81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL-------- 152 (287)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc--------
Confidence 479999999874321 1121 22345555443 4444445555432 566666543221
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEE
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (256)
.+ .+..-.++.+..-...+...++..++.....+++..+
T Consensus 153 ---~~-~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v 191 (287)
T PRK06194 153 ---LA-PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL 191 (287)
T ss_pred ---cC-CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 11 2333334443333334555566666655555654433
No 128
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.98 E-value=5.6e-05 Score=69.52 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHHHHhcccCCCcEEEEe----cCCccccccCCC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM----GNDQLGQALEDS 97 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~a 97 (256)
.++.++.|+||+||+|.+++..|.+++...||.++|.... ..+..++ + ...++... ...++..++.++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~---~~~v~~~~~D~~~~~~i~~a~~~~ 77 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-R---SGRVTVILGDLLDANSISNAFQGA 77 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-c---CCceeEEecchhhhhhhhhhccCc
Confidence 3567899999999999999999999986569999998742 1111111 1 11222221 123566789999
Q ss_pred CEEEEecCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 98 DVVIIPAGVPR-KPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 98 DvVIi~ag~~~-~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.||++|..+. .-.+ .+......|+...+.+.+.+.+.+-+ .+|..|+
T Consensus 78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs 126 (361)
T KOG1430|consen 78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSS 126 (361)
T ss_pred -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecC
Confidence 7777654432 2223 36666788999999999999998854 4555554
No 129
>PLN02240 UDP-glucose 4-epimerase
Probab=97.97 E-value=0.00011 Score=66.81 Aligned_cols=116 Identities=19% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhccc--CCCcEEEEec----CCccccccC--C
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN--TRSEVAGYMG----NDQLGQALE--D 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~--~~~~v~~~~~----t~d~~eal~--~ 96 (256)
..+||.|+||+|++|++++..|+..|+ +|+++|.... ......+.+.. ....++...+ ..++.++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 346999999999999999999999997 9999986421 11111111110 0111222211 112333343 6
Q ss_pred CCEEEEecCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 97 SDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~~-~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+|+||++|+.... .. ....+.+..|+.....+++.+.+.... .+|.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence 8999999986421 11 234567888999999999988776543 345454
No 130
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.97 E-value=5.7e-05 Score=67.46 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=65.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCc-cccc-----cCCCCEEEEec
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA 104 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~ea-----l~~aDvVIi~a 104 (256)
|.|+||+|++|++++..|+..|+ ..+.++|..........+.+.... ... ...+ +.+. +.++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDIA-DYM---DKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhhh-hhh---hHHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999999886 246667765211110111111100 000 0001 1112 23799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.+.....+....+..|+....++++.+.+.+. .+|..|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 854333334445678899999999999887653 344444
No 131
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.95 E-value=5.7e-05 Score=68.56 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=72.4
Q ss_pred cHHHHHHHHHcCCCccEEEEEeCCCc--h--------h--HHHH----Hh-ccc--------CCCcEEEEecCCcccccc
Q 025206 40 IGQPLALLMKLNPLVSRLALYDIANT--P--------G--VAAD----VG-HIN--------TRSEVAGYMGNDQLGQAL 94 (256)
Q Consensus 40 VG~~la~~l~~~~~~~eV~LiD~~~~--~--------g--~~~d----l~-~~~--------~~~~v~~~~~t~d~~eal 94 (256)
+|..+|..++..|+ +|+|+|++.. . + .... +. +.. ...+++... +.+.++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 47889999999999 9999999841 0 1 0111 10 100 012454321 22356789
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
++||+||.+. .+|.++.+++..++.+.+ |++++ .||.+... .+++..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~~--~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHVA--HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhcC--CcccEEEE
Confidence 9999999984 345777888888999998 56655 88877752 355655553 56889998
No 132
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.95 E-value=0.00014 Score=68.67 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC------------CcEEEEecCCcccccc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR------------SEVAGYMGNDQLGQAL 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~------------~~v~~~~~t~d~~eal 94 (256)
.+|||+|||. |+||.++|..|+. ++ +|+.||+++. .+..|.....+ ..+.. +++ .+++
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~-~~~~ 74 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSE-IEKI 74 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeC-HHHH
Confidence 4589999998 9999999999876 56 9999999842 12233322110 11222 334 3478
Q ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCC
Q 025206 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS 150 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~ 150 (256)
++||++|++.++|.+... ..| +..+....+.|.++. +..++|+- |-|...
T Consensus 75 ~~advvii~Vptp~~~~~-~~d-----l~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 75 KECNFYIITVPTPINTYK-QPD-----LTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred cCCCEEEEEcCCCCCCCC-Ccc-----hHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 999999999999864321 111 333444455555555 34444443 456654
No 133
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.94 E-value=3.1e-05 Score=65.78 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=93.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCC--CEEEEec
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIPA 104 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~a--DvVIi~a 104 (256)
|.|+||+|++|+.++..|..+|. +|+.+...+.......... .++.+. ...++.+.+++. |.||++|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-----eEEEEEeeccccccccccccccCceEEEEee
Confidence 78999999999999999999998 7665554432221111111 011111 112344566666 9999999
Q ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH--HHHHHhCCCCCCcEEEEeechHHH
Q 025206 105 GVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA--EVFKKAGTYNEKKLFGVTTLDVVR 180 (256)
Q Consensus 105 g~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~--~~~~~~~~~~~~kviG~t~lds~R 180 (256)
+.+. .......+.+..|+...+.+.+.+.+... ..+|.++. ... +-.. ..+.+...+.+..-.|.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~ 149 (236)
T PF01370_consen 74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEE 149 (236)
T ss_dssp SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccc
Confidence 8653 11134567788899999999999999987 35555543 221 0000 000000000011112233333344
Q ss_pred HHHHHHHHcCCCCCcee-EEEEeCC
Q 025206 181 AKTFYAGKANVNVAEVN-VPVVGGH 204 (256)
Q Consensus 181 ~~~~la~~l~v~~~~v~-~~v~G~H 204 (256)
+...+.++.+++...++ ..++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 150 LLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccc
Confidence 55556666688888888 5688976
No 134
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.93 E-value=0.00013 Score=66.04 Aligned_cols=118 Identities=14% Similarity=0.224 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc---CCCcEEE--EecCCccccccCCCCEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---TRSEVAG--YMGNDQLGQALEDSDVVI 101 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~---~~~~v~~--~~~t~d~~eal~~aDvVI 101 (256)
.+|||+|+|+ |.+|..++..|...|+ +|.+++.+..+ +....... ....... ....++ .++...+|+||
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVL 77 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEE
Confidence 4579999998 9999999999999998 99999886421 11111000 0000100 000112 23567899999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
++.-..+ ..++++.+.... |++.++...|-++. .+.+... +|+++|++-
T Consensus 78 lavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~-----~e~l~~~--~~~~~v~~g 127 (313)
T PRK06249 78 VGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGV-----EEQLREI--LPAEHLLGG 127 (313)
T ss_pred EEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHHH--CCCCcEEEE
Confidence 9953221 123444444433 78888888998873 2334433 677787764
No 135
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.93 E-value=8.2e-05 Score=67.48 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=67.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcc--cCCCcEEEEec----CCccccccCC-
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYMG----NDQLGQALED- 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~--~~~~~v~~~~~----t~d~~eal~~- 96 (256)
+.++|.|+||+|++|++++..|+.+|. +|+++|.... ......+... .....+....+ ..++.+++++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 346899999999999999999999998 9999987521 1111111100 00111222221 1123344553
Q ss_pred -CCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206 97 -SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP 137 (256)
Q Consensus 97 -aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p 137 (256)
.|+||++|+...... ......+..|+.....+++.+.++..
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 699999998643211 22334456788888899999888774
No 136
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.92 E-value=8e-05 Score=68.34 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=48.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC------CccEEEEEeCCC---chhHHHHHh--ccc--------CCCcEEEEecCCcc
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL 90 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~------~~~eV~LiD~~~---~~g~~~dl~--~~~--------~~~~v~~~~~t~d~ 90 (256)
||+|||+ |..|.++|..|..++ +..+|.|+.+++ -......++ |.. .+..++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999998 999999999999887 112999998742 112222222 211 1223333 4588
Q ss_pred ccccCCCCEEEEec
Q 025206 91 GQALEDSDVVIIPA 104 (256)
Q Consensus 91 ~eal~~aDvVIi~a 104 (256)
++++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 88999999999984
No 137
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.92 E-value=9.4e-05 Score=67.80 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc-----------CCCcEEEEecCCccccccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----------TRSEVAGYMGNDQLGQALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~-----------~~~~v~~~~~t~d~~eal~ 95 (256)
.+|||+|+|+ |.+|..++..|...+ +++++..++. ...++.+.. .+..+.. ++|+.++++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~ 76 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN 76 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence 4689999998 999999999999887 4677776532 122222110 1112222 456667899
Q ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
++|+||++.. ...++++++++..+- ++..+|.++|-++
T Consensus 77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 9999999852 223566666666654 6677888888655
No 138
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=9.5e-05 Score=67.11 Aligned_cols=97 Identities=14% Similarity=0.380 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc----cc------CCCcEEEEecCCcccccc-CCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH----IN------TRSEVAGYMGNDQLGQAL-EDS 97 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~----~~------~~~~v~~~~~t~d~~eal-~~a 97 (256)
|||+|||+ |.+|..++..|...|+ +|.+++.+.. ....+.. .. .+..++. ++++.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 58999998 9999999999999998 9999998632 1122221 11 1112332 34555666 589
Q ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCC
Q 025206 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVN 149 (256)
Q Consensus 98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~-~p~~~iiv~tNPvd 149 (256)
|+||++.- ...+.++++++.. + .++..++..+|-.+
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999852 1224556666655 3 36667777888653
No 139
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.84 E-value=0.00012 Score=65.21 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccc----cCCCCEEEEecCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV 106 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ea----l~~aDvVIi~ag~ 106 (256)
|.|+||+|++|++++..|..+|+ .+|+++|..........+........+.. ...++.. +.++|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999999884 26888886532111111111000000110 0111111 2589999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.....+..+.+..|+.....+++.+.+... .+|++|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4332234456678899999999999887754 355555
No 140
>PRK12320 hypothetical protein; Provisional
Probab=97.81 E-value=8.2e-05 Score=74.04 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec---CCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~eal~~aDvVIi~ag 105 (256)
|||.|+||+||+|++++..|+.+|+ +|+.+|..... ..+. .++...+ ...+.+++.++|+||++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~----~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDP----RVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccC----CceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 5899999999999999999999998 99999975211 1110 1111110 1123456789999999997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
... .. -...|+....++++.+++.+. .+|.+|
T Consensus 70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 531 11 123578888889998887764 455555
No 141
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.81 E-value=0.00013 Score=57.59 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
..+||+|||+ |.||.+++..|...|+ +|.-+-... ......+.+.. + ... ..++.+.++++|++|++..
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~-~-~~~----~~~~~~~~~~aDlv~iavp- 77 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI-G-AGA----ILDLEEILRDADLVFIAVP- 77 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC---T-T---------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc-c-ccc----ccccccccccCCEEEEEec-
Confidence 4579999998 9999999999999998 777664321 11222233211 1 111 1244578899999999952
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEecC--CCCCchH
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMISN--PVNSTVP 153 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~-p~~~iiv~tN--Pvd~~~~ 153 (256)
+ ..+.+++++|..+ . |+.+++-.|- ++++|-+
T Consensus 78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p 114 (127)
T PF10727_consen 78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP 114 (127)
T ss_dssp ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence 1 1256788888876 2 5667666664 5665544
No 142
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=0.00023 Score=65.77 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc------hhH------HHH--HhcccCCCcEEEEecCCcccccc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGV------AAD--VGHINTRSEVAGYMGNDQLGQAL 94 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~------~g~------~~d--l~~~~~~~~v~~~~~t~d~~eal 94 (256)
++|+|||- |+||.++|..++.+|. +|+-+|+++. .|+ ..| +.......+++. |+|. +.+
T Consensus 10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l 82 (436)
T COG0677 10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL 82 (436)
T ss_pred eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence 79999998 9999999999999999 9999999831 111 011 111111224553 4553 567
Q ss_pred CCCCEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCc--EEEEecCCCCCchHHHHHHHHH
Q 025206 95 EDSDVVIIPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNA--IVNMISNPVNSTVPIAAEVFKK 161 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~--~iiv~tNPvd~~~~i~~~~~~~ 161 (256)
+.||++|+|..+|-+.. +.. +..+.+-++.|.++-..+ +++=.|-|...+=-++--+++.
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pD-------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPD-------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCC-------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 89999999998886543 222 344555666666665433 3333356776544444334444
No 143
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.78 E-value=0.00023 Score=66.09 Aligned_cols=60 Identities=20% Similarity=0.415 Sum_probs=46.0
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
|-......+||+|||+.|.+|.+++..|...|+ +|.++|.+.. .+..+++++||+|
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlV 146 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMV 146 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEE
Confidence 433333457999999559999999999999998 9999997421 0223567899999
Q ss_pred EEec
Q 025206 101 IIPA 104 (256)
Q Consensus 101 Ii~a 104 (256)
|++.
T Consensus 147 ilav 150 (374)
T PRK11199 147 IVSV 150 (374)
T ss_pred EEeC
Confidence 9995
No 144
>PRK05865 hypothetical protein; Provisional
Probab=97.76 E-value=5.9e-05 Score=76.58 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=70.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEEecCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
|||.|+||+|++|++++..|+.+|+ +|+++|.+.... +. .... -+..- ....++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~-~~v~-~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WP-SSAD-FIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----cc-cCce-EEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999998 999998753110 00 0000 01110 01124456788999999999753
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
.. ....|+.....+++.+.+.+.. .+|++|.+.
T Consensus 73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 21 3466888888888888877543 566666654
No 145
>PLN02686 cinnamoyl-CoA reductase
Probab=97.74 E-value=0.00011 Score=67.93 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc---c-CCCcEEEEec----CCccccccCC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI---N-TRSEVAGYMG----NDQLGQALED 96 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~---~-~~~~v~~~~~----t~d~~eal~~ 96 (256)
.++++|.|+||+|++|++++..|+.+|+ +|+++..+... ....++... . ....+..+.+ ..++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 3567999999999999999999999998 88876554211 111122110 0 0011222211 1234567889
Q ss_pred CCEEEEecCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206 97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~~~g~--~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t 145 (256)
+|.||++++.....+. ....+...|.....++++.+.+. +.. .+|.+|
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~S 179 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTS 179 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEec
Confidence 9999999875422221 12344566888889999998875 333 344444
No 146
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.72 E-value=0.00035 Score=62.78 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=60.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|||+|||. |.+|.+++..|...|+ +|.++|+++.. ...+.+.... ......++.+.++++|+|+++...
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~~----~~~s~~~~~~~~~~~dvIi~~vp~-- 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRTT----GVANLRELSQRLSAPRVVWVMVPH-- 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCCc----ccCCHHHHHhhcCCCCEEEEEcCc--
Confidence 58999998 9999999999999998 99999987422 2223321111 011011334456789999998421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP 147 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP 147 (256)
..++++++.+.... ++.++|..||.
T Consensus 70 --------------~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 70 --------------GIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred --------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 12444555555554 66788887764
No 147
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.71 E-value=8.3e-05 Score=57.88 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=45.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc--CCCcEEEEecCCccccccCCCCEEEEec
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
||+|+||+|++|+.+...|..++.+.-+.+++.....|....-.+.. ....+... ..+ .+.+.++|+||++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DAD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecc-hhHhhcCCEEEecC
Confidence 79999999999999999999987776677777654223222222111 11123221 123 35679999999995
No 148
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.70 E-value=0.00043 Score=59.83 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------- 93 (256)
+.+++.|+||+|++|++++..|+++|. +|++++.++ ......++.+.. .++..+..+ ++ +.++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 899999874 222233333321 122222211 11 1112
Q ss_pred cCCCCEEEEecCCCCCC---C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206 94 LEDSDVVIIPAGVPRKP---G---MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t 145 (256)
....|+||+++|..... . +...+.+..|+.. .+.+.+.+.+..+.+.++++|
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 23589999999864211 1 1123344556555 566666663334445666665
No 149
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.70 E-value=0.00087 Score=57.46 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=64.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----Cccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~ea------- 93 (256)
+.+++.|+||+|.+|..++..|+++|. +|++++.+.. .....++.+ ..++..+.++ .++..+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 8999998742 222233332 1112222211 112222
Q ss_pred cCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|+||+++|...... .+ ..+.+..|+.- .+.+.+.+.+.. .+.++++|.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS 141 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVAS 141 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence 236799999998642211 11 12345556544 444444444333 345555553
No 150
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.68 E-value=0.00031 Score=62.46 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=44.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|||. |.+|.+++..|...|+ +|.++|.+.... ..+.+... +.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~--~~a~~~g~---~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTC--ERAIERGL---VDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence 58999998 9999999999999998 999999873211 11111110 111 12232 4689999999995
No 151
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.68 E-value=0.00053 Score=58.94 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ---LGQA------ 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------ 93 (256)
+.+++.|+||+|++|.+++..|+.+|+ +|++++.+.. .....++.... .++..+..+ ++ +.+.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999998 8988877531 11222232211 112222111 11 1111
Q ss_pred -cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 94 -LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 94 -l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
+...|+||+++|.......+..+.+..|......+++.+.++. ..+.++++|.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 2368999999875422211222334556666666677666654 3455666653
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.68 E-value=0.00059 Score=59.15 Aligned_cols=101 Identities=10% Similarity=0.199 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
+++.+||+|||+ |.+|.+++..+...+. ..++++++.+.. ....++.+.. .+.. +.++.+.++++|+||+
T Consensus 1 ~m~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiVii 72 (245)
T PRK07634 1 MLKKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVL 72 (245)
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEE
Confidence 356689999998 9999999998887753 334777775321 1122233211 1222 2355677899999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
+... ...+++++++..+-++.+||.++.-++
T Consensus 73 avp~----------------~~~~~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 73 AMPP----------------SAHEELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred ecCH----------------HHHHHHHHHHHhhccCCEEEEECCCCC
Confidence 8421 112444455544434456766666665
No 153
>PLN02253 xanthoxin dehydrogenase
Probab=97.67 E-value=0.00096 Score=58.60 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CC---cccccc-----
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQAL----- 94 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal----- 94 (256)
.+.+++.|+||+|.+|..++..|+.+|. +|+++|.+.. .....++.. ..++..+.. -. ++.+++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVD 90 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 9999998631 122222221 112222211 11 122222
Q ss_pred --CCCCEEEEecCCCCCC-C----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCCchHHHHHHHHH
Q 025206 95 --EDSDVVIIPAGVPRKP-G----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKK 161 (256)
Q Consensus 95 --~~aDvVIi~ag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd~~~~i~~~~~~~ 161 (256)
...|++|++||..... + .+ ....+..|+.....+.+.+.+. ...+.+++++.....
T Consensus 91 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~----------- 159 (280)
T PLN02253 91 KFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA----------- 159 (280)
T ss_pred HhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc-----------
Confidence 3689999999864321 1 11 2334566655444444433322 134566666543221
Q ss_pred hCCCCCCcEEEEeechHHHHHHHHHHHcCC
Q 025206 162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191 (256)
Q Consensus 162 ~~~~~~~kviG~t~lds~R~~~~la~~l~v 191 (256)
.+ .+....++.+..-...+-+.++..++-
T Consensus 160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~~ 188 (280)
T PLN02253 160 IG-GLGPHAYTGSKHAVLGLTRSVAAELGK 188 (280)
T ss_pred cc-CCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 11 122234455433334566667777653
No 154
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.66 E-value=0.00024 Score=61.72 Aligned_cols=112 Identities=28% Similarity=0.312 Sum_probs=64.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCccccc--------c
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQA--------L 94 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~ea--------l 94 (256)
+++.|+||+|.+|..++..|+++|. +|+++|.+.. .....++.. ..+..+.. ..++.+. .
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999997 9999998632 111111211 11111110 1112222 2
Q ss_pred CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~---~~p~~~iiv~tN 146 (256)
...|+||++||...... .+ ....+..|+.....+.+.+.+ ..+.+.+++++.
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 136 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS 136 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 35699999998753211 11 233456676655555444432 234456666654
No 155
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.65 E-value=0.00042 Score=65.72 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+||||.|.+|.+++..|...|+ +|.++|.+.... .++.... .+.. +.+..+++++||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence 5899998559999999999999998 899999874221 1111110 1121 235567789999999985
No 156
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.65 E-value=0.001 Score=58.82 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEec----CCc-------ccc
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG----NDQ-------LGQ 92 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~----t~d-------~~e 92 (256)
++++.+.|+||++.+|..+|..|+.+|+ +|+|+.++ ++...+.++++.. ...+..+.. +.+ +.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHh
Confidence 4556899999999999999999999999 99999887 3566667777533 111222211 111 111
Q ss_pred ccCCCCEEEEecCCCCCCC------CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 93 ALEDSDVVIIPAGVPRKPG------MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g------~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.....|+.|..||...... ++..++++-|+-. .+.+.+.+.+.. .+.||+++.
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S 143 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS 143 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 2236999999999753221 2245667777544 455555555543 456677753
No 157
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.64 E-value=3.2e-05 Score=69.07 Aligned_cols=98 Identities=26% Similarity=0.263 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|||.|+|++|++|+.+...|..+++ +++.++..+ .|+.+.. .+. ++-+. .+.|+||++|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence 7999999999999999999998887 888886542 2222211 000 11112 25889999997642
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 109 ~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
.. ..+.......|......+++.+.+.+ +.+|.+|
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~S 100 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHIS 100 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEee
Confidence 11 12355567788999999999888764 4565555
No 158
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.63 E-value=0.00071 Score=58.26 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----Cccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~ea------- 93 (256)
+.++|.|+|++|++|++++..|+.+|. +|++++.+.. .....++.... .++..+..+ .++.++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 9999998732 22223332211 122222211 111122
Q ss_pred cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..+.|+||+++|...... .+ -.+.+..|+.. .+.+.+.+.+... ..++++|.
T Consensus 79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss 140 (258)
T PRK12429 79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS 140 (258)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 246899999998643211 11 12234445443 5566666655543 35555553
No 159
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.63 E-value=0.00046 Score=60.65 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=60.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEE-eCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~Li-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|||++||. |.+|.+++..|+..++ ..+|+++ |.++.. ...+.+.. +.. ..+..+++++||+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKT---AASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEE---eCChHHHHhcCCEEEEEE-
Confidence 68999998 9999999999998875 3478888 765322 22232211 222 224456788999999996
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
.| ..++++.+.+..+. |+.++|..++...
T Consensus 70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 22 11344444554444 5667766666655
No 160
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.63 E-value=0.00012 Score=64.99 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=61.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCCCCC-
Q 025206 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK- 109 (256)
Q Consensus 33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~~~~- 109 (256)
|+||+|+||++++..|+..|+ ++++..... ..|+.+. .++.+.++ +.|+||++|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence 899999999999999998887 655553221 1223221 12223333 57999999976321
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 110 --~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
......+.+..|......+++.+++.... .+|.+|
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~S 100 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLG 100 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeC
Confidence 12234567888999999999999987644 344443
No 161
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.62 E-value=0.00072 Score=60.16 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=63.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
++||+|||+ |.+|.+++..|...+.. .+|+++|.+... ....+.... . .+.. +.+..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~-~-~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY-P-TVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc-C-CeEE---eCCHHHHHhhCCEEEEecC
Confidence 468999998 99999999999888722 389999875321 112222111 1 1221 2344567889999999853
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
. ..+.++++.+..+- ++..+|.+.|-++
T Consensus 74 p----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 74 P----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred H----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 22445666665544 4667777788776
No 162
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.60 E-value=0.00055 Score=61.66 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.+||+|||+ |.+|.+++..|...|+..+|.++|.+.... ......... ... ..+..+++++||+||++..
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~--~~a~~~g~~--~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETR--ARARELGLG--DRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHhCCCC--cee---cCCHHHHhcCCCEEEECCC
Confidence 368999998 999999999999888645899999873211 111111110 111 2244567899999999964
No 163
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.59 E-value=0.00056 Score=60.13 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
+|||+|||+ |.+|..++..|...+. ..+|.++|.+... ...+.+.. .+.. ..+..+.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 468999998 9999999999988772 1378999987321 12222210 1121 2244566789999999852
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
-..+.++++.+..+. +..|+.++|.+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 122445555555444 457777777665
No 164
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.59 E-value=0.00049 Score=62.08 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH-HHH----hcccC-----C-CcEEEEecC----------C
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHINT-----R-SEVAGYMGN----------D 88 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~-~dl----~~~~~-----~-~~v~~~~~t----------~ 88 (256)
+|.|+||+|++|++++..|+.+|...+|+++.+....... ..+ ..... . .++....++ .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 5889999999999999999998853478888776321110 111 11000 0 234433322 1
Q ss_pred ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++.+..+++|+||++|+.... .....++...|+.....+++.+.+..... ++.+|
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS 135 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS 135 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence 223445789999999875421 22344556778888888888887765543 44444
No 165
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.58 E-value=0.00096 Score=59.30 Aligned_cols=110 Identities=21% Similarity=0.153 Sum_probs=68.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEEE
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI 101 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvVI 101 (256)
||.|+||+|++|..++..|..+|. +|+++|.... ......+.+.. .++.+.++ .++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999998 8988875421 11111111100 12222111 12333343 699999
Q ss_pred EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
++||..... .....+.+..|+.....+++.+.+.+.. .++++|
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s 120 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS 120 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence 999864321 1233455678888888999988876544 344444
No 166
>PRK07680 late competence protein ComER; Validated
Probab=97.57 E-value=0.00067 Score=60.07 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
|||+|||+ |.+|..++..|...+.+ .+|.++|.+... ...+.+. .. .+.. ..+..+.++++|+||++..
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~-~~-g~~~---~~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER-YP-GIHV---AKTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH-cC-CeEE---ECCHHHHHHhCCEEEEecC-
Confidence 58999998 99999999999888742 479999987321 1222221 11 1222 2244566889999999951
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
| ..+.++++.+..+- ++.+|+.++|++.
T Consensus 72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 11344555555443 5678888898876
No 167
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.57 E-value=0.00036 Score=62.28 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=46.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
||+|||. |.+|+.++..|+..|+ +|+++|.+... ...+.+... .. ..+..+++++||+||++..
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEecC
Confidence 6999998 9999999999999998 99999987421 222332211 11 2245678899999999953
No 168
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.57 E-value=0.00071 Score=59.00 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccccCCCCE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDV 99 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal~~aDv 99 (256)
|.+...+.+++.|+||+|.+|..++..|+.+|. +|++++.++........ +.. ...+.... ...++.+.+...|+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDi 82 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDV 82 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCE
Confidence 555566667899999999999999999999998 99999886421111111 110 00111111 11233455678999
Q ss_pred EEEecCCCCCCCCC---HHHHHHHHHHHHHHHHHH
Q 025206 100 VIIPAGVPRKPGMT---RDDLFNINAGIVKDLCSA 131 (256)
Q Consensus 100 VIi~ag~~~~~g~~---r~d~~~~N~~i~~~i~~~ 131 (256)
+|++||.......+ ..+.+..|+.....+++.
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 117 (245)
T PRK12367 83 LILNHGINPGGRQDPENINKALEINALSSWRLLEL 117 (245)
T ss_pred EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 99999864322222 234456675544444443
No 169
>PRK06182 short chain dehydrogenase; Validated
Probab=97.56 E-value=0.00063 Score=59.60 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCcccccc-------CCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQAL-------EDSD 98 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal-------~~aD 98 (256)
+.+++.|+|++|.+|..++..|+.+|. +|++.+.+... ..++...... -+..-. ...++.+.+ .+.|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 346899999999999999999999998 99999876321 1122211110 011100 011222223 3789
Q ss_pred EEEEecCCCCCC---CC---CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 99 VVIIPAGVPRKP---GM---TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 99 vVIi~ag~~~~~---g~---~r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
++|+++|..... .. +....+..|.. .++.+.+.+++... +.++++|.
T Consensus 77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 999999864321 11 12334455543 35666666665543 45666653
No 170
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.56 E-value=0.00045 Score=57.66 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|||+||||+|.+|+.++..+..+|+ ||+.+=.+..+-.+ ++... -..-.++. .+.+.+++.+-|+||.+.|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~~~~~-i~q~Difd-~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--RQGVT-ILQKDIFD-LTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--cccce-eecccccC-hhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 99999776321110 00000 00001111 2234578999999999987653
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
++. ..+. .+....+...++... ...++++..
T Consensus 75 -~~~--~~~~---~k~~~~li~~l~~ag-v~RllVVGG 105 (211)
T COG2910 75 -SDN--DELH---SKSIEALIEALKGAG-VPRLLVVGG 105 (211)
T ss_pred -CCh--hHHH---HHHHHHHHHHHhhcC-CeeEEEEcC
Confidence 221 1111 233555666665443 446777764
No 171
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.55 E-value=0.00056 Score=58.04 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=63.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEE-ecCCcccc-------ccCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLGQ-------ALEDS 97 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~-~~t~d~~e-------al~~a 97 (256)
.++|.|+||+|.+|+.++..|+++|. +|+++|.+.. .....++...... .+..- ....++.+ .+...
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALR-IGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCce-EEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 45899999999999999999999998 8999998732 1222233221110 01100 00111112 23368
Q ss_pred CEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 98 DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 98 DvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
|+||+++|...... .+. .+.+..|......+++.+.+. .+...++++|.
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 99999988542111 111 233445555555555544322 23446666654
No 172
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.55 E-value=0.0014 Score=56.86 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=68.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccc-------cc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al 94 (256)
.+++.|+||+|.+|++++..|+.+|. +|++++.+.. .....++.... .++..+.++ +| +.+ ..
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999998 8999988632 11222222111 122222211 11 111 12
Q ss_pred CCCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN 146 (256)
...|+||+++|...... . ...+.++.|+.....+.+.+.++ .+.+.++++|.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999998632111 1 12334567777777777766554 23456666664
No 173
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.54 E-value=0.00037 Score=60.58 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----Ccccccc-CCCCEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQAL-EDSDVV 100 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal-~~aDvV 100 (256)
+++||.|+||+|++|+.++..|+.+|+ +|+++..+..... ..+.+ . ..+....++ .++.+.+ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~-~~~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAK-TSLPQ-D--PSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHH-Hhccc-C--CceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 567999999999999999999999988 8887765421111 11111 0 112222111 1234556 689999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|+++|.....+. .+.+..|......+++.+.+.... .++.+|
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iS 131 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILVS 131 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEEc
Confidence 998875422111 111223444456677777665543 444443
No 174
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.0013 Score=56.06 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=65.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l 94 (256)
.++|.|+||+|.+|+.++..|+.+|. +|++++++.. .....++... ..+..+.++ + ++.+. +
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 8999998732 2222333321 122222211 1 11122 2
Q ss_pred CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 025206 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP 147 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tNP 147 (256)
..+|+||+++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 4799999998764321 1122 234555655444444444332 233566666643
No 175
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.54 E-value=0.00055 Score=61.14 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=47.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||+|||. |.+|+.++..|+..|+ +|.++|.+.... ..+.... ... .+++.+++++||+||++..
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 58999998 9999999999999998 999999874221 1222211 111 2355677899999999953
No 176
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.53 E-value=0.00067 Score=62.63 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=46.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.||+|||. |.+|.+++..|...|+ ++.++|.++.......-..... .. ..++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---ID--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Cc--ccccCHHHHhcCCCEEEEeC
Confidence 37999998 9999999999999998 8888888743211111111111 11 01235567889999999995
No 177
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.00093 Score=57.38 Aligned_cols=116 Identities=19% Similarity=0.100 Sum_probs=66.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc----CCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL----EDS 97 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal----~~a 97 (256)
+++|.|+||+|.+|..++..|+++|. +|+++|.+. ......++.... ..++..+..+ . ++++.+ +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 35899999999999999999999998 899999874 222223332211 1123222211 1 122222 245
Q ss_pred CEEEEecCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 98 DvVIi~ag~~~~---~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
|++|+++|.... ...+.. +.+..|......+.+.+.++ ...+.++++|-
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 135 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS 135 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 999999875321 122222 34566666555555555443 22356666664
No 178
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.53 E-value=0.0021 Score=55.62 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~ 95 (256)
++|.|+||+|.+|.+++..|+++|. +|+++|.+. ......++.+.....++..+..+ ++ +..+ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3699999999999999999999998 999999873 22222222221100112222111 11 1111 24
Q ss_pred CCCEEEEecCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206 96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~r~---d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
..|+||+++|.+... ..+.. ..+..|+.- .+.+.+.+.+..+++.++++|...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 679999999865422 11222 234455443 445555555555456777776543
No 179
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.51 E-value=0.0012 Score=58.79 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=60.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.|||++||+ |.+|.+++..|+..|. ..+|+++|++.. ....++.... .++. ..+..+.+++||+||++.
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence 4579999998 9999999999998872 238888887531 1122332211 1222 224456788999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
. +. .+.++++.+..+. ++.++|.+.+.+.
T Consensus 74 ~----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 74 K----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred C----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 2 11 1223334454443 5667777666665
No 180
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.51 E-value=0.0021 Score=55.16 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc-------cccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------eal~ 95 (256)
+.++|.|+||+|.+|.+++..|+.+|. +|++++.+........+.... .++..+..+ ++ +. +...
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 446899999999999999999999998 999998764322222222211 112222111 11 11 1234
Q ss_pred CCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~----~~~p~~~iiv~tN 146 (256)
..|++|+++|...... . .-.+.+..|+.....+.+.+. +....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999998643211 1 122345566554444444443 3333466666664
No 181
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.51 E-value=0.001 Score=58.53 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=65.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---cccccc-------C
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQAL-------E 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal-------~ 95 (256)
.+++|.|+||+|++|++++..|+.+|. +|++++.+... ..++.... ..++..... -+ ++.+.+ .
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 345799999999999999999999998 89999986321 11222111 011211111 01 111222 3
Q ss_pred CCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
..|+||++||.... + ..+. .+.+..|+.-...+.+.+.++ ...+.+|++|.
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 58999999986421 1 1122 234667766655566554332 22345666664
No 182
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.51 E-value=0.00059 Score=54.58 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=70.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----CC---cEEEEecCCccccccCCCCEEEEe
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RS---EVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----~~---~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
|+|+|+ |.+|..+|..|.+.++ +|.+++..+ ... .+..... .. .+.......+..+....+|+||+|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLE--AIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHH--HHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHH--hhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 789998 9999999999999898 999998764 211 1221110 11 111111011112356899999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
.-.. -..+.++.++++. |++.++.+-|=++. .+.+.+. +|+.++++-
T Consensus 75 vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~-----~~~l~~~--~~~~~v~~g 122 (151)
T PF02558_consen 75 VKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGN-----EEVLAEY--FPRPRVLGG 122 (151)
T ss_dssp SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSH-----HHHHHCH--STGSGEEEE
T ss_pred eccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCc-----HHHHHHH--cCCCcEEEE
Confidence 5221 1345666677777 67788888898873 2444444 566777665
No 183
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.50 E-value=0.0018 Score=57.57 Aligned_cols=96 Identities=13% Similarity=0.230 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
+||++||+ |.+|++++..|++.|+ ..+|+.+|.++.. ...+.+.. . +.. ..+..+.+++||+||++..
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~-g--~~~---~~~~~e~~~~aDiIiLavk- 72 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY-G--ITI---TTNNNEVANSADILILSIK- 72 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc-C--cEE---eCCcHHHHhhCCEEEEEeC-
Confidence 48999998 9999999999998885 3479999876322 22222110 1 222 2244567889999999862
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd 149 (256)
| ..+.++++.+..+. ++.++|-+.-.++
T Consensus 73 ---P------------~~~~~vl~~l~~~~~~~~lvISi~AGi~ 101 (272)
T PRK12491 73 ---P------------DLYSSVINQIKDQIKNDVIVVTIAAGKS 101 (272)
T ss_pred ---h------------HHHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence 2 11334444454443 5567766666665
No 184
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.001 Score=57.48 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|.+|+.++..|+++|+ +|++++.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446999999999999999999999998 899999863
No 185
>PLN02996 fatty acyl-CoA reductase
Probab=97.50 E-value=0.0018 Score=62.33 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCC----chhH-HHHHhcc------------cC----CCcEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN----TPGV-AADVGHI------------NT----RSEVAGY 84 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~----~~g~-~~dl~~~------------~~----~~~v~~~ 84 (256)
+.+.|.|+||+||+|+.++..|+.. .-+.+|+++-+.+ .... ..++.+. .+ ..+++..
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 3458999999999999999987764 3355777776542 1101 0111110 00 1234444
Q ss_pred ecCC----------c-cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 025206 85 MGND----------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135 (256)
Q Consensus 85 ~~t~----------d-~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~ 135 (256)
.++- + +.+.++++|+||++|+... ...+..+....|+....++++.+.+.
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3321 1 2345678999999997653 23345667788999999999988765
No 186
>PRK05717 oxidoreductase; Validated
Probab=97.49 E-value=0.00056 Score=59.25 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=79.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALED 96 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~ 96 (256)
.+++.|+||+|++|++++..|+.+|. +|+++|.++...... ..+.. ..+..+..+ ++ +.+ .+..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999997 999998764221110 11111 112111111 11 111 1235
Q ss_pred CCEEEEecCCCCCCC-----CC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206 97 SDVVIIPAGVPRKPG-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (256)
Q Consensus 97 aDvVIi~ag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~ 166 (256)
.|++|++||...... .+ ....+..|+.....+.+.+.++- ..+.+|++|..... .+ .+
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-~~ 152 (255)
T PRK05717 85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-EP 152 (255)
T ss_pred CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-CC
Confidence 799999998653211 11 23456777776666666665432 34566666643221 11 22
Q ss_pred CCcEEEEeechHHHHHHHHHHHcC
Q 025206 167 EKKLFGVTTLDVVRAKTFYAGKAN 190 (256)
Q Consensus 167 ~~kviG~t~lds~R~~~~la~~l~ 190 (256)
..-.+|.+..-...+-+.+++.++
T Consensus 153 ~~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 153 DTEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhc
Confidence 222344432222355666777775
No 187
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.49 E-value=0.002 Score=55.41 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCC-------------c
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGND-------------Q 89 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~-------------d 89 (256)
..+.++|.|+|++|++|..++..|+..|. +|+++|.+. ......++.+.... ++..+..+- .
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHH
Confidence 33556899999999999999999999987 999999873 22233344332211 122111110 1
Q ss_pred cccccCCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 025206 90 LGQALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN 146 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~---~~p~~~iiv~tN 146 (256)
+.+.+...|+||++||.... + ..+. ...+..|+.....+.+.+.+ ..+...++++|.
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 12233468999999986321 1 1122 23455666544444444332 123456666664
No 188
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.49 E-value=0.00082 Score=59.43 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=65.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEecCCCCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK 109 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~ag~~~~ 109 (256)
|+|+|++|+||+++...|...|+ +|+++-++..... . ..+.. +... ..+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~-~-~~~~~----v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKAS-Q-NLHPN----VTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchh-h-hcCcc----cccc---chhhhcccCCCCEEEECCCCccc
Confidence 57999999999999999999999 9999877632211 1 11111 1111 11223333 79999999998743
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEec
Q 025206 110 PG----MTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMIS 145 (256)
Q Consensus 110 ~g----~~r~d~~~~N~~i~~~i~~~i~~~~p~~-~iiv~t 145 (256)
.. +....+.+--+...+.+.+.|.+..... .+|+.|
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaS 110 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISAS 110 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecc
Confidence 32 1123344444677888899998766333 444443
No 189
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.48 E-value=0.0027 Score=57.30 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-cC----CCc-EEEEecCCccccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NT----RSE-VAGYMGNDQLGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-~~----~~~-v~~~~~t~d~~eal~~aDvVI 101 (256)
.|||+|+|+ |.||..++..|...|. +|.+++..... ...+... .. ... ........+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~--~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQR--LAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHH--HHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEE
Confidence 469999998 9999999999999887 99999885211 1111110 00 000 110000111 12356789999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (256)
Q Consensus 102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~ 173 (256)
++.-.. + ..+.++++..+. +++.++.+-|=++.. +.++.. ++.+++++-
T Consensus 76 v~vK~~--------~--------~~~al~~l~~~l~~~t~vv~lQNGv~~~-----e~l~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LACKAY--------D--------AEPAVASLAHRLAPGAELLLLQNGLGSQ-----DAVAAR--VPHARCIFA 125 (305)
T ss_pred EECCHH--------h--------HHHHHHHHHhhCCCCCEEEEEeCCCCCH-----HHHHHh--CCCCcEEEE
Confidence 985210 1 234455565554 888888899998842 223333 677777765
No 190
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.48 E-value=0.002 Score=56.43 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------ 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------ 94 (256)
+.+++.|+||+|++|+.++..|+.+|. +|++++.+. ......++.......++..+..+ . ++.+.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999999998 999999763 22222233211101122222111 1 122222
Q ss_pred -CCCCEEEEecCCCCCCC----CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
...|++|+++|.....+ .+. .+.+..|......+.+.+.++ ...+.++++|.
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS 146 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS 146 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 26899999998542211 122 223445655555555444332 23456666654
No 191
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.0015 Score=57.22 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cc------cccCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LG------QALED 96 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~------eal~~ 96 (256)
+.+.|+||+|++|..++..|+.+|. +|++++.+. ......++.+......+..+..+ +| +. +.+..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999998 899998763 11121222221111123322211 12 11 11245
Q ss_pred CCEEEEecCCCCCC--C-CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 025206 97 SDVVIIPAGVPRKP--G-MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~~~--g-~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~t 145 (256)
.|+||+++|..... . .+ -.+.+..|......+.+. +++... +.++++|
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs 139 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS 139 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence 79999999864321 1 11 123345665554444444 444433 4455555
No 192
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.47 E-value=0.0022 Score=54.75 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccc-------c
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------A 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------a 93 (256)
+.+++.|+||+|++|+.++..|+.+|. .|++.+.+. +.....++. .++..+..+ + ++.+ .
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 788887652 221112221 112211111 1 1111 2
Q ss_pred cCCCCEEEEecCCCCCC---C---CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 025206 94 LEDSDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV 148 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPv 148 (256)
+...|+||+++|..... . ++-...+..|+.....+++.+.+. .+.+.++++|...
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 34689999999864321 1 112334566665544454444322 2345666676543
No 193
>PLN00016 RNA-binding protein; Provisional
Probab=97.46 E-value=0.001 Score=61.45 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=59.5
Q ss_pred CceEEEE----cCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH---------HHHhcccCCCcEEEEecC-Cccccc
Q 025206 28 DRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---------ADVGHINTRSEVAGYMGN-DQLGQA 93 (256)
Q Consensus 28 ~~KI~II----GaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~---------~dl~~~~~~~~v~~~~~t-~d~~ea 93 (256)
++||.|+ ||+|++|++++..|+.+|+ +|++++.+...... .++... .++...++ .++.+.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~~ 125 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSSA----GVKTVWGDPADVKSK 125 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhhc----CceEEEecHHHHHhh
Confidence 4689999 9999999999999999998 99999886321110 112111 12222221 233333
Q ss_pred c--CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 94 L--EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 94 l--~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+ .++|+||++++.. ....+.+++.+++.+.+ .+|.+|
T Consensus 126 ~~~~~~d~Vi~~~~~~--------------~~~~~~ll~aa~~~gvk-r~V~~S 164 (378)
T PLN00016 126 VAGAGFDVVYDNNGKD--------------LDEVEPVADWAKSPGLK-QFLFCS 164 (378)
T ss_pred hccCCccEEEeCCCCC--------------HHHHHHHHHHHHHcCCC-EEEEEc
Confidence 3 5799999986421 22345567777666544 455454
No 194
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.46 E-value=0.00064 Score=65.00 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC--CCcEEEEecCCccccccC---CCCEEEEe
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVIIP 103 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~---~aDvVIi~ 103 (256)
.+|+|||. |.+|+++|..|+.+|+ +|.++|+++.. ..++.+... ...+.. .+++++.++ ++|+|+++
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 58999998 9999999999999999 99999987422 122221100 011222 345556554 58988888
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP 147 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP 147 (256)
... -+.++++++.+..+- |+.+||..+|-
T Consensus 74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 522 133445555555543 67788888873
No 195
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.46 E-value=0.002 Score=55.24 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=64.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l 94 (256)
.+++.|+||+|++|+.++..|+.+|. +|+++|.+.. .....++.+.. .++..+..+ .+ ++++ +
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 9999988732 22222333211 122222211 11 1122 2
Q ss_pred CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~----~~~p~~~iiv~tN 146 (256)
...|++|+++|...... .+. ...+..|+.....+.+.+. +.. .+.+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECc
Confidence 35899999998532111 122 2235666665555544443 333 345555553
No 196
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.45 E-value=0.0011 Score=60.55 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=60.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|||. |.+|+.+|..|...|. +|+.+|.+.... .+. .+ + ..++.+++++||+|+++.
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKDADIISLHV 206 (330)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhcCCEEEEeC
Confidence 445679999998 9999999999998887 999999863210 110 11 1 235678999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
... + .+..++. .+.+....|++++|+++-
T Consensus 207 P~t--~---------~t~~li~--~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 207 PAN--K---------ESYHLFD--KAMFDHVKKGAILVNAAR 235 (330)
T ss_pred CCc--H---------HHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence 322 1 0111111 122333347889998874
No 197
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.45 E-value=0.00091 Score=60.52 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhH---HHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|+|+ |.||+.+++.|.+.|. +|.++-..+. +.. -+.+.+.......... ..+..+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~--~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV--AATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc--cccChhhcCCCCEEEEEe
Confidence 69999998 9999999999999995 7777755421 111 1111111110011111 112245678999999995
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE-EEEeec
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL-FGVTTL 176 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv-iG~t~l 176 (256)
-.. -..+.++.+..+. |+++|+.+=|=.+. .+..++. +++++| .|+|..
T Consensus 76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~-----~e~l~~~--~~~~~il~G~~~~ 126 (307)
T COG1893 76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGH-----EEELRKI--LPKETVLGGVTTH 126 (307)
T ss_pred ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcH-----HHHHHHh--CCcceEEEEEeee
Confidence 322 1356667777777 67788888898883 3444444 565544 456543
No 198
>PRK08643 acetoin reductase; Validated
Probab=97.45 E-value=0.0059 Score=52.70 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~ 95 (256)
+++.|+||+|.+|..++..|+++|. +|+++|.+. ......++.+.. ..+..+..+ ++ +.+ .+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3788999999999999999999997 899999873 222223333211 112211110 11 111 234
Q ss_pred CCCEEEEecCCCCC-CC--CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206 96 DSDVVIIPAGVPRK-PG--MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 96 ~aDvVIi~ag~~~~-~g--~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
+.|++|+++|.... +- .+. ...+..|+.. .+.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 68999999986422 11 111 2234455543 33444444444445677777653
No 199
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.44 E-value=0.0016 Score=55.74 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL------ 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal------ 94 (256)
..++|.|+||+|++|..++..|+.+|. +|++++.+. ......++.... ..+..+.++ .++.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999999998 899998873 222222333211 123222211 1112222
Q ss_pred -CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN 146 (256)
..+|+||+++|.... + ..+. .+.+..|+.....+.+.+ .+.. ...++++|.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss 142 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS 142 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence 378999999976432 1 1222 234555655555555444 3333 345555553
No 200
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.44 E-value=0.0007 Score=62.05 Aligned_cols=96 Identities=24% Similarity=0.328 Sum_probs=62.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.++|.|+||+|++|+.++..|..+.-..+|++++.+. +.....++.+. .+ .++.+++.++|+||+++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~t 223 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWVA 223 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEECC
Confidence 34589999999999999999998642245899998763 22222222211 11 14567899999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~ 150 (256)
+.+...-.+..++ .+..++|=++-|=|+
T Consensus 224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDV 251 (340)
T PRK14982 224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNL 251 (340)
T ss_pred cCCcCCcCCHHHh------------------CCCeEEEEecCCCCC
Confidence 8764211222111 356788888889774
No 201
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.0018 Score=56.52 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------- 93 (256)
+.+++.|+||+|++|.+++..|+.+|. +|++.|.+. ......++.... ..+..+..+ ++ +.++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999998 999999873 222223332211 122222111 12 1111
Q ss_pred cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN 146 (256)
+...|+||++||...... .+ ..+.+..|......+.+.+ .+..+.+.+++++.
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 246899999998632211 11 2234455655444444444 34445566777765
No 202
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0054 Score=52.62 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=65.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCcc---c-------ccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL---G-------QAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------eal 94 (256)
.+++.|+||+|++|.+++..|+.+|. +|+++|.+.. .....++.+.. ..+..+.. -++. . +.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999997 9999998732 12222222211 11111111 1121 1 112
Q ss_pred CCCCEEEEecCCCCC--C----CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 025206 95 EDSDVVIIPAGVPRK--P----GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS 145 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~--~----g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~t 145 (256)
...|+||+++|.... + ..+. .+.+..|+.....+.+.+.++. +.+.++++|
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 468999999986421 1 1121 2345566665555555555432 234666666
No 203
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0032 Score=53.92 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------- 93 (256)
+.+++.|+||+|.+|+.++..|+.+|. +|++++.+. ......++.... .++..+..+ ++ +.+.
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 899998763 222223333211 122222211 11 1111
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
+.+.|+||+++|..... ..+. ...+..|..-...+.+.+.++ .+.+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 25789999999864321 1111 223455655555555554432 22456666654
No 204
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.43 E-value=0.0012 Score=56.18 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 4569999998 9999999999999996 589999987
No 205
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.42 E-value=0.0016 Score=64.82 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc--CCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~aDvVIi~a 104 (256)
..|||.|+||+|++|++++..|..+|+ +|... .. |+.+.. .+...+ .+.|+||++|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~~------------~v~~~i~~~~pd~Vih~A 436 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDRS------------SLLADIRNVKPTHVFNAA 436 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccHH------------HHHHHHHhhCCCEEEECC
Confidence 457999999999999999999998887 66321 10 111100 011122 2689999999
Q ss_pred CCCCCC--C---CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206 105 GVPRKP--G---MTRDDLFNINAGIVKDLCSAIAKYCP 137 (256)
Q Consensus 105 g~~~~~--g---~~r~d~~~~N~~i~~~i~~~i~~~~p 137 (256)
+....+ + .+..+.+..|+.....+++.+++.+.
T Consensus 437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 754221 1 24566778999999999999998865
No 206
>PRK07069 short chain dehydrogenase; Validated
Probab=97.40 E-value=0.007 Score=51.85 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=65.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEec-CCc---c-------ccccC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMG-NDQ---L-------GQALE 95 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~eal~ 95 (256)
||.|+||+|.+|.+++..|+.+|. +|++.+.+ . +.....++........+..+.. -.+ + .+.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999998 99999976 2 1222222222110001111110 011 1 12234
Q ss_pred CCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..|+||+++|...... .+ ....+..|+. .++.+.+.+.+... +.++++|.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 6899999998643211 11 2234556665 66777777766543 45666654
No 207
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00069 Score=60.37 Aligned_cols=95 Identities=24% Similarity=0.266 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~ 106 (256)
|||.|+|++|++|+.+...|. .+. +|+-.|... +|+.+.. .+.+.++ .-|+||++|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 579999999999999998887 445 788777643 4555422 1223343 56999999986
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 107 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
..-. ..++..-+.-|......+++...+.+ +++|.+|
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiS 99 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIS 99 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEee
Confidence 5432 23455567889999999999998885 4555554
No 208
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.39 E-value=0.00089 Score=56.95 Aligned_cols=115 Identities=20% Similarity=0.303 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea------- 93 (256)
..++|.|+||+|++|..++..|+++|+ +|++++.+.. .....++.... .++..+..+ . ++.++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 8999998742 22222232111 112211111 1 11122
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMIS 145 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~t 145 (256)
+...|.||+++|..... ..+. .+.+..|+.....+.+.+.++ .....+|++|
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s 140 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS 140 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 23569999998753221 1111 233555666555555555322 2224566565
No 209
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.39 E-value=0.0034 Score=54.22 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=67.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccc-------cc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------AL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------al 94 (256)
.++|.|+||+|.+|..++..|+.+|. +|++.|.+. .......+.+.. .++..+..+ + ++.+ .+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999998 899999873 222222232211 112221110 1 1111 23
Q ss_pred CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 025206 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP 147 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNP 147 (256)
...|++|+++|..... ..+ -.+.+..|+.....+.+.+.++. ..+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 4589999999864311 111 23345567665555555555442 34567767654
No 210
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.003 Score=56.38 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-----HHHHhcccCCCcEEEEecCCc-cccccCCCCEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVI 101 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d-~~eal~~aDvVI 101 (256)
.++|+|+|. |.+|.+++..|...|+ .+.+++.+...+. .+++.+.. +.+ ..++.++||+||
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----------~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----------TVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----------ccchhhhhcccCCEEE
Confidence 469999998 9999999999999999 5656655532111 12222110 112 146788999999
Q ss_pred EecC
Q 025206 102 IPAG 105 (256)
Q Consensus 102 i~ag 105 (256)
++..
T Consensus 70 vavP 73 (279)
T COG0287 70 VAVP 73 (279)
T ss_pred Eecc
Confidence 9953
No 211
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.00049 Score=60.09 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.++|.|+||+|.+|++++..|+.+|. +|++.+.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~ 37 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY--RVFGTSRN 37 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 345799999999999999999999998 89999886
No 212
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.37 E-value=0.0012 Score=61.52 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEec
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..++||+|+||+|++|..+...|..++.+ ||.++..++..+....-.+.... ....... ..+ .+.++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 45679999999999999999999888533 88888665322221111111100 0111011 112 13468999999986
Q ss_pred C
Q 025206 105 G 105 (256)
Q Consensus 105 g 105 (256)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 3
No 213
>PLN02256 arogenate dehydrogenase
Probab=97.36 E-value=0.0011 Score=59.96 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~a 104 (256)
+.+||+|||+ |.+|..++..|...|. +|+.+|.+.....+.++ . +.. ..+..+.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence 4579999998 9999999999998886 89999987422112211 1 111 12344454 4799999985
No 214
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.0033 Score=54.25 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=65.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cc-------ccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LG-------QAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------eal 94 (256)
.++|.|+||+|.+|.+++..|+.+|. +|+++|.+.. .....++.... .++..+..+ ++ +. +.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 9999998732 22223332111 112211111 11 11 123
Q ss_pred CCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN 146 (256)
...|+||++||.... + ..+. ...+..|+.-...+.+.+.++- ..+.+|++|.
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999986422 1 1122 2345566655555555554431 1246666664
No 215
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=97.36 E-value=0.00026 Score=62.15 Aligned_cols=122 Identities=21% Similarity=0.334 Sum_probs=77.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC----CCc-----cEEEEEeCCC--------chhHHHHHhcccCCCcEEEEecCCc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGNDQ 89 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~----~~~-----~eV~LiD~~~--------~~g~~~dl~~~~~~~~v~~~~~t~d 89 (256)
+..||.+.|| |.-|..++.+|... |+- ++++++|.+- +......+.+...+. .. ..+
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~--~~---~~~ 97 (255)
T PF03949_consen 24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPE--KD---WGS 97 (255)
T ss_dssp GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTT--T-----SS
T ss_pred HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccc--cc---ccC
Confidence 4459999998 99999998877654 873 6899999972 111122233222111 10 137
Q ss_pred cccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--CchHHHHHHHHHhCCC
Q 025206 90 LGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTY 165 (256)
Q Consensus 90 ~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd--~~~~i~~~~~~~~~~~ 165 (256)
+.|+++++ |++|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.. ..++ .++++ +
T Consensus 98 L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p--eda~~----~ 157 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP--EDAYE----W 157 (255)
T ss_dssp HHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H--HHHHH----T
T ss_pred HHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH--HHHHh----h
Confidence 78999999 9998876643 2 125789999999999999999999987 6443 23333 3
Q ss_pred CCCcE-EEEe
Q 025206 166 NEKKL-FGVT 174 (256)
Q Consensus 166 ~~~kv-iG~t 174 (256)
...++ |+++
T Consensus 158 t~g~ai~AtG 167 (255)
T PF03949_consen 158 TDGRAIFATG 167 (255)
T ss_dssp TTSEEEEEES
T ss_pred CCceEEEecC
Confidence 34444 5663
No 216
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.0033 Score=56.17 Aligned_cols=117 Identities=20% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccc-------c
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------A 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------a 93 (256)
+.++|.|+||+|.+|..++..|+.+|. +|++++.+.. .....++........+..+..+ .+ +.+ .
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 345899999999999999999999998 8999988632 2122233211101122222211 11 111 1
Q ss_pred cCCCCEEEEecCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|++|++||....+. +.-...+..|... .+.+.+.+.+.. .+.||++|.
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 246899999998632211 1122334555544 566666665543 356666653
No 217
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.34 E-value=0.0014 Score=58.83 Aligned_cols=91 Identities=14% Similarity=0.273 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC---CCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~---aDvVIi~ag 105 (256)
|||++||. |.+|++++..|...|+ +|+++|.++.. ...+.+.. ... ..++++.+++ +|+||++..
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence 58999998 9999999999999998 99999987422 12232211 111 2244455544 699999853
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN 146 (256)
.+ +.++++++.+... .++.++|..|+
T Consensus 69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 21 1223333444433 36667777754
No 218
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.34 E-value=0.0019 Score=55.90 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCcccc-------ccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQ-------ALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~e-------al~ 95 (256)
+++.|+|++|.+|..++..|+.+|. +|+++|.+.. .....++.. .+..+.. ..++.+ .+.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999998 9999998742 111222211 1111111 111222 234
Q ss_pred CCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN 146 (256)
..|++|+++|...... . +-...+..|+.....+.+.+.++ .+.+.+++++.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 6899999998642111 1 12334566666555555555432 33466766664
No 219
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.33 E-value=0.0012 Score=59.04 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||++||. |.+|+++|..|...|+ +++.+|.++.+. +..+...... . ..+..++.++||+||.+..
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga~----~---a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGAT----V---AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCCc----c---cCCHHHHHHhCCEEEEecC
Confidence 58999998 9999999999999999 999999985432 2333332211 1 1234678999999999964
No 220
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.0069 Score=53.21 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=84.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---------hhHHHHHhcccCCCcEEEEec----CCcccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYMG----NDQLGQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---------~g~~~dl~~~~~~~~v~~~~~----t~d~~eal 94 (256)
.+++.|+||+|++|..++..|+++|. +|++++.+.. .....++.... .++..+.. ..++.+.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence 35799999999999999999999998 9999987621 11122222111 11222211 11122222
Q ss_pred -------CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCCchHHHHHH
Q 025206 95 -------EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEV 158 (256)
Q Consensus 95 -------~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd~~~~i~~~~ 158 (256)
...|++|+++|.... + ..+. ...+..|+.....+.+.+.++ ...+.+++++.+....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------- 154 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD------- 154 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence 368999999986321 1 1222 223455655444444444332 2346677666443210
Q ss_pred HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (256)
Q Consensus 159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 202 (256)
..+++....++.+..-..++-+.++..++ +..|++..+-
T Consensus 155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~ 193 (273)
T PRK08278 155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW 193 (273)
T ss_pred ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence 00013334445543333456667777775 3456554443
No 221
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.0014 Score=55.32 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC---CCCEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE---DSDVV 100 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~---~aDvV 100 (256)
++++.|+||+|++|..++..|+++ + +|++++.+... ..++.+... .++.+.+ ..++.++++ +.|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 458999999999999999999988 6 89999986321 112221100 1111111 112333343 69999
Q ss_pred EEecCCC
Q 025206 101 IIPAGVP 107 (256)
Q Consensus 101 Ii~ag~~ 107 (256)
|+++|..
T Consensus 76 i~~ag~~ 82 (227)
T PRK08219 76 VHNAGVA 82 (227)
T ss_pred EECCCcC
Confidence 9999864
No 222
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.32 E-value=0.0012 Score=57.01 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
|+|.|+||+|.+|..++..|+.+|. +|++++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999998 999999873
No 223
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.31 E-value=0.0016 Score=60.39 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..++|+|||.+|.+|.+++..|.+. ++ +|+.+|.. +.. ..+..+.+++||+||++.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence 3569999998899999999999865 44 89999873 100 123456789999999995
No 224
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.30 E-value=0.0048 Score=52.40 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
++++|.|+||+|.+|+.++..|+++|+ ++++....
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRS 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence 456899999999999999999999998 77665544
No 225
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.0031 Score=54.25 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
++|.|+||+|.+|+.++..|+++|. +|++++.+.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999998 899998764
No 226
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.29 E-value=0.0035 Score=56.33 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC---CCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~---~aDvVIi~a 104 (256)
|||+|||. |.+|++++..|+..|+ +|.++|.++.. ..++.+.. .+. ..++.+.++ ++|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999998 9999999999999998 99999987422 22233221 111 123334444 479999985
No 227
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.29 E-value=0.0042 Score=62.04 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------ 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------ 94 (256)
+.+++.|+||+|.+|..++..|++.|. +|++.|++. +.....++........+..+.. -+ ++.+++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999998 999999873 2222222321100001111111 11 222233
Q ss_pred -CCCCEEEEecCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRKPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.+.|++|++||...... .+.. ..+..|+. ..+...+.+.+....+.++++|.
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS 553 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS 553 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 36899999998643211 1111 12223322 34455666665544555665553
No 228
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0047 Score=53.02 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=63.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Ccc----------ccccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQL----------GQALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~----------~eal~ 95 (256)
+++.|+||+|.+|..++..|+.+|. +|++.+.+. ......++........+..+..+ ++. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999997 899998873 22222333221111122222211 111 12245
Q ss_pred CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN 146 (256)
..|++|++||...... .+ -...+..|......+.+.+ .+... ..++++|.
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS 140 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISS 140 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 7899999998643221 11 1223455655444444443 33333 34555553
No 229
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0036 Score=56.43 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---c-------ccc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---L-------GQA 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~ea 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.+.+. ......++........+..+.. -.+ + .+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999997 999998873 2222233332111112222211 111 1 112
Q ss_pred cCCCCEEEEecCCCCCCC-----CCHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG-----MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g-----~~r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
....|++|+.||....+. +.....+..|.. +.+.+.+.+.+. .+.|+++|.
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS 150 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSS 150 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEec
Confidence 345899999998643211 112233444533 345555555433 345555553
No 230
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.27 E-value=0.0034 Score=56.00 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.++|.|+||+|.+|..++..|+.+|. +|++++.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~ 73 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARR 73 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECC
Confidence 36799999999999999999999998 99999987
No 231
>PRK09135 pteridine reductase; Provisional
Probab=97.27 E-value=0.0023 Score=54.71 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=61.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------ 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------ 94 (256)
.++|.|+||+|++|++++..|+.+|. +|++++... ......++.+... ..+..+.++ ++ +.+++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999998 999998752 1222223332111 112211111 11 11222
Q ss_pred -CCCCEEEEecCCCCC--CC----CCHHHHHHHHHHHHHHHHHHHHHh
Q 025206 95 -EDSDVVIIPAGVPRK--PG----MTRDDLFNINAGIVKDLCSAIAKY 135 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~--~g----~~r~d~~~~N~~i~~~i~~~i~~~ 135 (256)
...|+||+++|.... .. .+..+.+..|+.....+.+.+.++
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 130 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ 130 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 357999999985321 11 112445667777666666666543
No 232
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.26 E-value=0.00049 Score=60.40 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=85.2
Q ss_pred ccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCC----C-----ccEEEEEeCCCc----h----hHHHHHhcc
Q 025206 13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNP----L-----VSRLALYDIANT----P----GVAADVGHI 75 (256)
Q Consensus 13 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~----~-----~~eV~LiD~~~~----~----g~~~dl~~~ 75 (256)
|-.+.+-+...+..+..||.+.|| |.-|..++.+|...+ + -.+++++|.+-+ . .....+.+
T Consensus 10 AgllnAlk~~g~~l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~- 87 (254)
T cd00762 10 AGLLAALKVTKKKISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR- 87 (254)
T ss_pred HHHHHHHHHhCCChhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH-
Confidence 333333333334445569999998 999999998876543 2 128999998721 1 11111110
Q ss_pred cCCCcEEEEecCCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--Cc
Q 025206 76 NTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--ST 151 (256)
Q Consensus 76 ~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd--~~ 151 (256)
+..+-. ...++.++++ ++|+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.. ..
T Consensus 88 -~~~~~~---~~~~L~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 88 -FANPER---ESGDLEDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAEC 149 (254)
T ss_pred -HcCccc---ccCCHHHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCcccc
Confidence 100101 1247889999 999998776544 2 125788899999999999999999986 43
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEee
Q 025206 152 VPIAAEVFKKAGTYNEKKLFGVTT 175 (256)
Q Consensus 152 ~~i~~~~~~~~~~~~~~kviG~t~ 175 (256)
+| -++++.+ ..+.+++++.
T Consensus 150 tp--e~a~~~t---~G~ai~AtGs 168 (254)
T cd00762 150 TA--EEAYTAT---EGRAIFASGS 168 (254)
T ss_pred CH--HHHHhhc---CCCEEEEECC
Confidence 33 2333322 2356888853
No 233
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0055 Score=53.66 Aligned_cols=113 Identities=15% Similarity=0.035 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALEDS 97 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~a 97 (256)
+++.|+||+|++|+.++..|+.+|. +|++++.+.. ...++.... ...+..+..+ ++ +.+ .+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999998 8999887631 111221110 1122222111 11 111 23458
Q ss_pred CEEEEecCCCCCCC-C--C---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 98 DVVIIPAGVPRKPG-M--T---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 98 DvVIi~ag~~~~~g-~--~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
|+||+++|...... . + -...+..|+.....+.+.+.++ ...+.+|++|.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 99999998753211 1 1 1234566777666666665322 22345665553
No 234
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.26 E-value=0.0035 Score=58.89 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII 102 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi 102 (256)
+.++|.|+||+|.+|.+++..|+++|. +|+++|.+... ....+.+... .+.... ...++.+.+.+.|++|+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~--~v~~v~~Dvsd~~~v~~~l~~IDiLIn 251 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDL--PVKTLHWQVGQEAALAELLEKVDILII 251 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCC--CeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence 346899999999999999999999998 99999876321 1111211111 111111 11123445778999999
Q ss_pred ecCCCCCCCCCH---HHHHHHHHHH----HHHHHHHHHHh
Q 025206 103 PAGVPRKPGMTR---DDLFNINAGI----VKDLCSAIAKY 135 (256)
Q Consensus 103 ~ag~~~~~g~~r---~d~~~~N~~i----~~~i~~~i~~~ 135 (256)
+||.......+. .+.++.|... ++.+.+.+++.
T Consensus 252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998653322222 3345666554 44445545443
No 235
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.0015 Score=56.63 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
++.++|.|+||+|.+|..++..|+++|. +|+++|.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 3456899999999999999999999998 999999874
No 236
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.005 Score=52.58 Aligned_cols=116 Identities=18% Similarity=0.288 Sum_probs=66.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhH----HHHHhcccCCCcEEEEecC-Cc---cccc---
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGV----AADVGHINTRSEVAGYMGN-DQ---LGQA--- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~----~~dl~~~~~~~~v~~~~~t-~d---~~ea--- 93 (256)
+.++|.|+||+|++|+.++..|+.+|. +|++++... .... ..++... ...+..+.++ .+ +.+.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999998 899987641 1111 1122111 1122222111 11 1122
Q ss_pred ----cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH-H---hCCCcEEEEecC
Q 025206 94 ----LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA-K---YCPNAIVNMISN 146 (256)
Q Consensus 94 ----l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~-~---~~p~~~iiv~tN 146 (256)
....|+||+++|..... ..+. ...+..|......+++.+. . ......+++++.
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 147 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIAS 147 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 24689999999865321 1121 2345667777777776665 1 122245555554
No 237
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.0047 Score=52.96 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
.+++.|+||+|.+|+.++..|+.+|. +|++++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 45899999999999999999999997 899998763
No 238
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0018 Score=56.04 Aligned_cols=71 Identities=25% Similarity=0.462 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHH-Hhc-ccCCCcEEEEe-cCCccccc-cCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-VGH-INTRSEVAGYM-GNDQLGQA-LEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~d-l~~-~~~~~~v~~~~-~t~d~~ea-l~~aDvVIi~a 104 (256)
|+++|+|+ |.+|+++|..|...|+ +|+++|.++.. +.. +.+ .... -+.+.. ...-++++ +.++|++|.+-
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADELDTH-VVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68999998 9999999999999999 99999998421 111 110 1100 111111 01123344 78999999985
Q ss_pred C
Q 025206 105 G 105 (256)
Q Consensus 105 g 105 (256)
|
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
No 239
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.24 E-value=0.0028 Score=54.13 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=65.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------- 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------- 94 (256)
.+++.|+|++|.+|..++..|+.+|. +|++++.+. ......++... ..++..+..+ + ++.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999998 999999873 22222233221 1123222211 1 122222
Q ss_pred CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 025206 95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV 148 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPv 148 (256)
.+.|+||+++|...... .+. ...+..|+.-...+.+.+.++ ...+.+++++.+.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~ 145 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA 145 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence 47999999998643211 111 233555655444444444332 2234555566443
No 240
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.0021 Score=56.60 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---ccccc--------CC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--------ED 96 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal--------~~ 96 (256)
++|.|+||+|.+|..++..|+.+|. +|++.+.+... ..++.+.. +..+.. -+| +++++ ..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999998 99999986321 11222211 111110 011 11111 25
Q ss_pred CCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.|++|++||...... .+ ....+..|+.. .+.+.+.+.+... +.||++|.
T Consensus 77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS 135 (277)
T PRK05993 77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS 135 (277)
T ss_pred ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence 799999998643211 11 22345566544 5666666665543 45666653
No 241
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0047 Score=53.20 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|.+|..++..|+..|. +|++++.+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 41 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA 41 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999999997 899999873
No 242
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0073 Score=52.31 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea------- 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|+++|.+. ......++.......++..+..+ + ++.++
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999998 899999873 22223333321111122222111 1 12222
Q ss_pred cCCCCEEEEecCCCCCC--C-CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKP--G-MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~--g-~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|++|++||..... . .+. ...+..|+... +.+.+.+.+. ..+.||++|.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 145 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS 145 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 23689999999864211 1 111 22344554433 4444444433 3456666654
No 243
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.23 E-value=0.0013 Score=57.96 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
||.|+||+|++|+.++..|++.|+ +|+.+..+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 589999999999999999999998 899998763
No 244
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=97.23 E-value=0.003 Score=57.08 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---c--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc--CC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---T--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--ED 96 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~~ 96 (256)
..+|.|+||+|+||++.+..|..+|. +|+++|... + -..+..+.+. ...+.++.++ .| +++.+ ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 35899999999999999999999999 999999752 1 1112222221 1234433321 11 22222 35
Q ss_pred CCEEEEecCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206 97 SDVVIIPAGVPRK-P-GMTRDDLFNINAGIVKDLCSAIAKYC 136 (256)
Q Consensus 97 aDvVIi~ag~~~~-~-g~~r~d~~~~N~~i~~~i~~~i~~~~ 136 (256)
-|-|++.|+.... + -+.+..+...|+--...+.+.+++++
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 7889998765421 1 13456677888888899999999998
No 245
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0041 Score=53.70 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Ccccccc-------C
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQAL-------E 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal-------~ 95 (256)
+.+++.|+||+|.+|..++..|+..|. +|+++|.+... .... ..+..+..+ .++.+.+ .
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDG----RPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcC----CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999998 99999886321 0010 011111110 1122222 3
Q ss_pred CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~----~~p~~~iiv~tN 146 (256)
..|+||++||...... .+ ....+..|+.....+.+.+.+ ....+.+|++|.
T Consensus 75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 5699999998642111 11 233455666555555554433 223356776664
No 246
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.0061 Score=52.84 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~ 95 (256)
++|.|+||+|.+|..++..|+.+|. +|+++|.+.. .....++.... ..+..+..+ .+ +.++ +.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 9999998732 22222333211 123222211 11 1111 23
Q ss_pred CCCEEEEecCCCCCCC---C-CH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 025206 96 DSDVVIIPAGVPRKPG---M-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP 147 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNP 147 (256)
+.|+||+++|...... . +. ...+..|+.....+.+.+.++- ..+.++++|..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6899999998643211 1 11 2335666665555555554321 23456666543
No 247
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.22 E-value=0.0015 Score=58.52 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
+..||+|+|+ |.+|.++++.|+..|. .+|+++|++. ++..+.++.+.... ..... ..++.+.++++|+||.+
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~~--~~~~~-~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFPA--ARATA-GSDLAAALAAADGLVHA 199 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCCC--eEEEe-ccchHhhhCCCCEEEEC
Confidence 3468999998 9999999999998884 5899999983 44445555432211 22211 22344578899999998
No 248
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.0017 Score=55.94 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=64.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec-CC---cccc-------cc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-ND---QLGQ-------AL 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~-t~---d~~e-------al 94 (256)
+.++|.|+||+|.+|+.++..|+++|. +|++.+.+.. .....++... .+..+.. .. ++.+ .+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGG----NAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCC----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 8999988632 1112222211 1111110 11 1111 12
Q ss_pred CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
...|+||+++|...... .+. ...+..|......+.+.+.++ ...+.++++|.
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 46799999998643211 111 224556655555555554433 22456666653
No 249
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.21 E-value=0.0058 Score=52.42 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc----------cccccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~ 95 (256)
+++.|+||+|++|+.++..|+.+|. +|++++.+.. .....++.... .++.....+ .+ +.+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999998 9999998732 11112222111 122222111 11 223356
Q ss_pred CCCEEEEecCCCCC-CC--CCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRK-PG--MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~-~g--~~r---~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN 146 (256)
+.|+||+++|.... +. .+. ...+..|......+.+.+ ++... ..++++|.
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~~v~~ss 137 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW-GRIINIAS 137 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 78999999986421 11 111 233445655544444444 44433 35555553
No 250
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.21 E-value=0.00089 Score=60.13 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||+|||. |.+|.+++..|+..|+ +|.++|+++.. ..++.... ... ..++.+++++||+||++..
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence 48999998 9999999999999998 99999987422 22233211 111 2345678899999999853
No 251
>PRK12742 oxidoreductase; Provisional
Probab=97.20 E-value=0.0048 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.++|.|+||+|.||..++..|+.+|. +|++.+..
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 345899999999999999999999998 88887653
No 252
>PRK05884 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0016 Score=55.63 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
||+.|+||+|.+|+.++..|+.+|. +|++++.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~ 33 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGAR 33 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 5899999999999999999999998 99999886
No 253
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.20 E-value=0.0029 Score=56.98 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------ 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------ 94 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.+.+. +.....++... ...+..+..+ .+ +.+++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999999997 899998763 22222333211 1122222111 11 12222
Q ss_pred -CCCCEEEEecCCCCC----CCCC---HHHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 025206 95 -EDSDVVIIPAGVPRK----PGMT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMIS 145 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~----~g~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~~~iiv~t 145 (256)
...|++|+.||.... ...+ ....+..|... .+.+.+.+.+... .+.||++|
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999985321 1112 23345666543 4444555554432 24566665
No 254
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0032 Score=55.01 Aligned_cols=113 Identities=21% Similarity=0.198 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~ 95 (256)
++|.|+||+|.+|+.++..|+.+|. +|++.+.+. +.....++.... .++.....+ ++ +.+. ..
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999998 899998763 222222333211 112211111 11 1121 24
Q ss_pred CCCEEEEecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..|++|+++|..... ..+. ...+..|.. ..+.+.+.+.+.. .+.++++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 689999999864321 1121 223455543 4444555555443 345666653
No 255
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.19 E-value=0.0033 Score=54.09 Aligned_cols=93 Identities=23% Similarity=0.303 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
+||+|||. |.+|..+...+.... .+.-+.+||.+..+ +..+......+. .+++.+.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999998 999999988877553 35567888987322 233332211111 1355667799999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.+.+++++.++-+.+.|.+++.++-
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechh
Confidence 3557788888877777777665543
No 256
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.012 Score=50.52 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=63.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CCC--chhHHHHHhcccCCCcEEEEec-CCc---ccccc------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL------ 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal------ 94 (256)
.++|.|+||+|++|+.++..|+.+|. +|++.. .+. ......++.... ..+..+.. -.| +.+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999997 777653 332 111122222111 11222211 111 11112
Q ss_pred -------CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 95 -------EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 95 -------~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
.+.|+||+++|...... .+. ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 26899999998643211 111 2334567666666666665543 2345665653
No 257
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.028 Score=48.51 Aligned_cols=116 Identities=12% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccE-EEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCc---cccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------ 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~e-V~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------ 93 (256)
+.++|.|+||+|.+|..++..|+.+|. + |+++|.+.. .....++... ...+..+.. -++ +.+.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999987 6 999988631 2222222211 112221111 111 1111
Q ss_pred -cCCCCEEEEecCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 94 -LEDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 -l~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
+.+.|++|+++|...... .+.. ..+..|+.-. +...+.+.+....+.++++|.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 236899999998653211 1222 2345554433 334444444433456666654
No 258
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.18 E-value=0.0046 Score=56.04 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=64.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec--CCc-------cccccC-
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG--NDQ-------LGQALE- 95 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~--t~d-------~~eal~- 95 (256)
...+.|+||+|.+|..++..|+.+|. +|++++++. ++....++........+..+.. +.+ +.+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 35789999999999999999999998 899999873 3333344432111111221110 111 112233
Q ss_pred -CCCEEEEecCCCCC---C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 96 -DSDVVIIPAGVPRK---P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 -~aDvVIi~ag~~~~---~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
|.|++|+.||.... + ..+. ...+..|+... +.+.+.+.+.. .+.||++|.
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS 193 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS 193 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence 45699999986421 1 1121 23455665544 34444444433 456666653
No 259
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.18 E-value=0.001 Score=59.25 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=71.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcC----CCc-----cEEEEEeCCCc--------hhHHHHHhcccCCCcEEEEec
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--------PGVAADVGHINTRSEVAGYMG 86 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~----~~~-----~eV~LiD~~~~--------~g~~~dl~~~~~~~~v~~~~~ 86 (256)
+..+..||.+.|| |.-|..++.+|... |+- ..++++|.+-+ ......+.+.. . . . .
T Consensus 21 ~~l~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~-~---~ 93 (279)
T cd05312 21 KPLSDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E-K---E 93 (279)
T ss_pred CChhhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c-c---c
Confidence 3444569999998 99999999877654 652 58999998721 11111222211 1 0 0 1
Q ss_pred CCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 87 NDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 87 t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
..++.++++ ++|+.|=+.+.+ | -+.+++++.|.++|++.+|+-.|||..
T Consensus 94 ~~~L~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 94 GKSLLEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred CCCHHHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 247889999 899988765433 2 124788899999999999999999976
No 260
>PRK07577 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.0015 Score=55.46 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
.++|.|+||+|.+|..++..|+.+|. +|++++.+.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999997 999998763
No 261
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.0029 Score=55.85 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l 94 (256)
.+.+.|+||+|.+|..++..|+.+|. +|++.|.+. +.....++.... .++..+..+ + ++.+. +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999998 899999873 222223333211 112222111 1 11111 2
Q ss_pred CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
...|++|++||..... ..+. ...++.|+... +.+.+.+.+....+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1122 23345565444 444444444443466766664
No 262
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.18 E-value=0.0018 Score=59.17 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|||. |.+|+.+|..|...|. +|..+|....... +... . .. ..++.+.+++||+|+++.
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-~----~~----~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-G----AE----YRPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-C----CE----ecCHHHHHhhCCEEEEeC
Confidence 345679999998 9999999999998887 9999998632211 1111 1 11 125667899999999996
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~ 150 (256)
... + + +..++. .+.+....|++++|+++ ..+|.
T Consensus 213 P~t--~-~--------T~~~i~--~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 213 PLT--K-E--------TYHMIN--EERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred CCC--h-H--------HhhccC--HHHHhcCCCCeEEEECcCchhcCH
Confidence 322 1 0 111111 12333445889999997 45663
No 263
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.18 E-value=0.0014 Score=59.88 Aligned_cols=97 Identities=27% Similarity=0.357 Sum_probs=60.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
....++|+|||. |.+|+.+|..|+ ..|. +|+.+|...... ... . +. ...++.+++++||+|+++
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~----~~~-~----~~---~~~~l~ell~~aDvIvl~ 207 (332)
T PRK08605 143 SIKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAK----AAT-Y----VD---YKDTIEEAVEGADIVTLH 207 (332)
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHh----HHh-h----cc---ccCCHHHHHHhCCEEEEe
Confidence 345679999998 999999999984 3455 899999763211 111 0 11 123567889999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd 149 (256)
.... + .++ .++ | .+. +....|++++|+++ .++|
T Consensus 208 lP~t--~-~t~-~li--~----~~~---l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 208 MPAT--K-YNH-YLF--N----ADL---FKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred CCCC--c-chh-hhc--C----HHH---HhcCCCCcEEEECCCCcccC
Confidence 6332 1 111 111 1 122 22334788999887 3555
No 264
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.18 E-value=0.015 Score=52.87 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=39.4
Q ss_pred cHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 40 IGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 40 VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
=|+++|..|+..|+ +|+++|+++. .....++.+... .. ..+..++.++||+||++..
T Consensus 31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~---AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV---VSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee---cCCHHHHHhCCCEEEEecC
Confidence 47889999999999 9999998742 122334444321 11 2345688999999999953
No 265
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0028 Score=54.14 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=65.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-D---QLGQAL------ 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------ 94 (256)
.+++.|+||+|.+|+.++..|+.+|. +++++..+.. .....++.... .++..+..+ . ++++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999998 8888765421 12222222211 122222211 1 122222
Q ss_pred -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN 146 (256)
...|+||+++|...... .+ ....+..|+.....+++.+.+. .+.+.++++|.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 36899999998642111 11 2233556665555555554433 24456776653
No 266
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.17 E-value=0.0051 Score=53.11 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cc-------cc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QA 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------ea 93 (256)
..+++.|+||+|.+|..++..|+.+|. +|++.|.+. ......++.+... .+..+..+ .+ +. +.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 999999873 2222233332211 12111110 11 11 12
Q ss_pred cCCCCEEEEecCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
+...|+||+++|.... + ..+ -...+..|......+.+.+.++ ...+.++++|.
T Consensus 84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (254)
T PRK08085 84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS 145 (254)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 2457999999986421 1 111 2234555654444444444332 23356666653
No 267
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0067 Score=52.26 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=62.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCccccccC-CCCEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQALE-DSDVVI 101 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~-~aDvVI 101 (256)
++|.|+||+|.+|..++..|+++|. +|++.+.+.. .....+...... .+..... ..++.+++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3799999999999999999999997 8888887631 111111111111 1221111 112333444 899999
Q ss_pred EecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 102 IPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 102 i~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
++||...... .+. ...+..|+. ..+.+.+.+.+... +.+|++|.
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS 132 (257)
T PRK09291 79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS 132 (257)
T ss_pred ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence 9998653211 111 122334543 33344444444443 56666663
No 268
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.16 E-value=0.0025 Score=56.14 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..|||+|||+ |.+|++++..|...+.. .+++.+|.++.. + .... ..+..+.++++|+||++.
T Consensus 2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav 65 (260)
T PTZ00431 2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV 65 (260)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence 3479999998 99999999999988743 258888875321 0 0111 123345678999999984
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
- | ..+.++++.+..+-++..+|...+-++
T Consensus 66 k----p------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 K----P------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred C----H------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1 1 224455555554433345666667666
No 269
>PRK06398 aldose dehydrogenase; Validated
Probab=97.16 E-value=0.0023 Score=55.70 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=61.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-----HHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
.+++.|+||+|.+|..++..|+..|. +|++++.+..... ..|+.+.. .+... -....+.+...|++|+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence 45899999999999999999999998 8999987632110 11111100 00000 0001122346899999
Q ss_pred ecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 103 PAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 103 ~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
+||.+... ..+. ...+..|+... +.+.+.+.+. ..+.||++|.
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS 131 (258)
T PRK06398 79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS 131 (258)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 99864321 1122 23355565543 4444444433 3456666653
No 270
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0038 Score=55.84 Aligned_cols=116 Identities=19% Similarity=0.123 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-CccccccC--CCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQLGQALE--DSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d~~eal~--~aDvVIi 102 (256)
|++.|+|++||+|+++...+..+..-.+|+.+|.-- ......++.+..-..-++...++ ..+.+.++ +.|+|++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 589999999999999999888776545688888642 11222444442211112211111 12234455 6899999
Q ss_pred ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025206 103 PAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (256)
Q Consensus 103 ~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~ 144 (256)
.|...- +.=....++++.|+--...+.++.+++...-.++-+
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HI 124 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHI 124 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEe
Confidence 875321 111235678899999999999999999854334444
No 271
>PRK09186 flagellin modification protein A; Provisional
Probab=97.16 E-value=0.0059 Score=52.56 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.++|.|+||+|.+|..++..|+.+|. +|++.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~ 37 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADID 37 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecC
Confidence 346899999999999999999999998 89999876
No 272
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.16 E-value=0.0031 Score=55.86 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|||. |.+|.+++..|...|+..+|+.+|.++.. ...+.+... ... ..++.++ .+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~~-~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEEL-KKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHHH-hcCCEEEEeC
Confidence 58999998 99999999999988864478889987321 111222111 100 1133343 4699999995
No 273
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=97.15 E-value=0.013 Score=50.60 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=65.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---cccc-------cCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED 96 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea-------l~~ 96 (256)
.+.+.|+|++|.+|.+++..|+..|. +|+++|.........++.... ..+..+.. -++ +.+. +..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999998 899888754322222332211 11221111 111 1122 236
Q ss_pred CCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 97 aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
.|++|++||..... ..+ -...+..|+... +.+.+.+.+..+.+.++++|.
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 89999999864311 111 223455665443 344444444444577777664
No 274
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.15 E-value=0.004 Score=53.38 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------- 93 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------- 93 (256)
.+++.|+||+|.+|+.++..|+.+|. +|++.+... ......++.+.. .++.....+ .+ +.++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999997 777665431 122223333211 122222111 11 1122
Q ss_pred cCCCCEEEEecCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
+...|+||++||...... +.-.+.+..|......+.+.+.++ ...+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 234799999998743211 112344566766555555555443 23456666654
No 275
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.14 E-value=0.0082 Score=52.09 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
|++.|+||+|.+|..++..|+.+|. +|++.|.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5899999999999999999999998 899999873
No 276
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0077 Score=52.79 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccc-------cccCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLG-------QALEDS 97 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-------eal~~a 97 (256)
+.|.|+||+|++|++++..|+++|. +|++.+.+... ..++.+.. ...+..+..+ + ++. +.+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTAT--LADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999997 89999986321 11111110 0111111110 1 111 123467
Q ss_pred CEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206 98 DVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 98 DvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t 145 (256)
|.||+++|...... .+ -...+..|+.. .+.+.+.+++.... .+|++|
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 99999998753211 11 23345566554 44455555554443 455555
No 277
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.12 E-value=0.011 Score=50.93 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
++|.|+|++|++|+.++..|+++|. +|+++|..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~ 35 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRP 35 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecC
Confidence 3688999999999999999999997 99999875
No 278
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.12 E-value=0.015 Score=50.75 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=83.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccC-C--CcEEEEec----CCccccccCCCCE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINT-R--SEVAGYMG----NDQLGQALEDSDV 99 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~-~--~~v~~~~~----t~d~~eal~~aDv 99 (256)
+-+.|+||++.+|..+|..|++.|. +|+|..++ +++..+.++.+... . ..++.... -..+.+.+...|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 3467999999999999999999999 99999987 35666666663110 0 11111000 0123455678999
Q ss_pred EEEecCCCCCCC------CCHHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206 100 VIIPAGVPRKPG------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK 169 (256)
Q Consensus 100 VIi~ag~~~~~g------~~r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k 169 (256)
+|..||...... ++-..++..|++-+ +-+.+.+.+.. .+.||+++.-... .. ||...
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~-----------~~-y~~~~ 151 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGR-----------YP-YPGGA 151 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecccccc-----------cc-CCCCc
Confidence 999999754321 12344677786655 44555554443 4588888754442 12 77788
Q ss_pred EEEEee
Q 025206 170 LFGVTT 175 (256)
Q Consensus 170 viG~t~ 175 (256)
+++-|.
T Consensus 152 vY~ATK 157 (246)
T COG4221 152 VYGATK 157 (246)
T ss_pred cchhhH
Confidence 887753
No 279
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0048 Score=53.53 Aligned_cols=33 Identities=36% Similarity=0.355 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
++|.|+||+|.+|..++..|+++|. +|+++|.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~ 35 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA--TLGLVARR 35 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 5899999999999999999999998 99999987
No 280
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.11 E-value=0.0045 Score=55.26 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEec----CCccc-------c
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG----NDQLG-------Q 92 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~----t~d~~-------e 92 (256)
...+.|.|+||+.-+|.++|+.++..|. .++++-.. +++....++.......++..... ..+.+ .
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999998 77888665 23333344443322111222111 11222 3
Q ss_pred ccCCCCEEEEecCCCCCCCC-C------HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206 93 ALEDSDVVIIPAGVPRKPGM-T------RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~-~------r~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~ 150 (256)
-+.+.|+.|..||..+ .+. + ..+.++.| +...+...+.+++.+ ++.|++++...+-
T Consensus 88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~ 154 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGK 154 (282)
T ss_pred hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccc
Confidence 4679999999999877 331 1 22344444 678889999999888 8888888876653
No 281
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0012 Score=56.34 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=64.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCcccccc---CCCCEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL---EDSDVVII 102 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal---~~aDvVIi 102 (256)
+.+++.|+|++|.+|..++..|+.+|. +|++++.+... ..++.+......+..- ....++.+.+ ...|+||+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence 446899999999999999999999998 89999986311 1112111000001100 0011122222 35899999
Q ss_pred ecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206 103 PAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (256)
Q Consensus 103 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN 146 (256)
++|..... ..+ -...+..|+.-...+.+.+.+. +..+.++++|.
T Consensus 84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 99864321 111 2233456666555555555443 22356666663
No 282
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0054 Score=53.59 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=65.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQA-------L 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~ea-------l 94 (256)
.+++.|+||+|.+|..++..|+.+|. +|+++|.+. +.....++.... .++..+.. ..++.+. +
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 899999863 222222332211 11111111 1112222 2
Q ss_pred CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 025206 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV 148 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tNPv 148 (256)
...|++|+++|..... ..+. ...+..|+.....+.+.+.+. .+++.++++|.+.
T Consensus 85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 4579999998753211 1122 223456655544555444332 1346777777543
No 283
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.11 E-value=0.0068 Score=52.45 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|++|.+++..|+.+|. +|+++|.+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 446899999999999999999999998 899999863
No 284
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.09 E-value=0.008 Score=52.05 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------- 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------- 94 (256)
+.+++.|+||+|.+|..++..|+..|. +|++++.++ .......+.+.. .++..+..+ .+ +.+.+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 345899999999999999999999998 899998762 111112222211 122222211 11 11222
Q ss_pred CCCCEEEEecCCCCC-C--CCC---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 025206 95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~-~--g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNP 147 (256)
...|++|+++|.... + ..+ ..+.+..|+.....+. +.+.+.. .+.+++++..
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~ 151 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASM 151 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCH
Confidence 367999999986431 1 111 2234455654443334 4443332 3566666653
No 285
>PRK09242 tropinone reductase; Provisional
Probab=97.09 E-value=0.012 Score=50.97 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=64.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal 94 (256)
.+++.|+||+|.+|..++..|+.+|. +|++++.+. ......++.......++..+..+ .+ +.+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 999999873 22223333322111122222111 11 11234
Q ss_pred CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
...|+||+++|.... + ..+. ...+..|+.-. +.+.+.+++. +.+.+|++|.
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 147 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS 147 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 568999999986321 1 1122 22344555443 3444444433 3356666654
No 286
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.08 E-value=0.0032 Score=54.40 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea------- 93 (256)
+.+++.|+||+|.+|+.++..|+.+|. +|+++|.+. +.....++.... .++.....+ + ++.++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999998 999999873 222233333211 112211111 1 12222
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCCC
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNPv 148 (256)
+...|++|+++|..... ..+. ...+..|+.-...+. +.+.+. ..+.++++|...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence 23469999999864211 1111 234556655444455 444333 345677776543
No 287
>PRK06128 oxidoreductase; Provisional
Probab=97.08 E-value=0.0094 Score=53.17 Aligned_cols=115 Identities=22% Similarity=0.247 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC----chhHHHHHhcccCCCcEEEEecC-C---ccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSEVAGYMGN-D---QLG-------Q 92 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-------e 92 (256)
.+++.|+||+|.+|..++..|+..|. +|++.+.+. .......+.... .++..+..+ . ++. +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999998 888876542 111222222211 112211111 1 111 1
Q ss_pred ccCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 93 ALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
.+...|++|++||.....+ .+ ....+..|+.-...+++.+.++- +.+.||+++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2346899999998642111 12 23456777776666777766553 3457776654
No 288
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0062 Score=52.31 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC----CCCEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE----DSDVV 100 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~----~aDvV 100 (256)
.++.|+||+|.+|..++..|+.+|. +|+++|.+.... ..+.+... ++..+.. ..+++++++ ..|.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSA--NIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcC--CCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 4789999999999999999999998 899999873211 11111110 1111110 112222332 35788
Q ss_pred EEecCCCCCC--C-CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 101 IIPAGVPRKP--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 101 Ii~ag~~~~~--g-~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
|+.+|..... . .+. .+.+.-|......+.+.+..+- +...+++++.
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 76 IFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred EEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 8888743211 1 122 2346677776777777666542 3445666654
No 289
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.07 E-value=0.0038 Score=53.13 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEec-CCc---cccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------ 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------ 93 (256)
+.++|.|+|++|++|+.++..|+.+|. +|++...+.. .....++.... .++..... -.+ +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999998 8877765422 11222222111 11222111 111 1111
Q ss_pred -cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 025206 94 -LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN 146 (256)
Q Consensus 94 -l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tN 146 (256)
+.+.|.||+++|...... .+. ...+..|......+.+.+.++. +.+.++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 246899999998643211 112 2234556666666666665543 2345665654
No 290
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.00084 Score=60.41 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=49.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCch-----hHHHHHhcccC-------C-CcEEEEecCCccccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP-----GVAADVGHINT-------R-SEVAGYMGNDQLGQA 93 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~-----g~~~dl~~~~~-------~-~~v~~~~~t~d~~ea 93 (256)
++||+.||| |+||-+....++.+ +.+ +|.++|++..+ ...+.+.++.+ . ..+- + ++|++.+
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdieka 75 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKA 75 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHH
Confidence 469999998 99999876655443 322 99999997311 00111121111 1 1222 2 4688899
Q ss_pred cCCCCEEEEecCCCCC
Q 025206 94 LEDSDVVIIPAGVPRK 109 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~ 109 (256)
++.||+|++...+|.+
T Consensus 76 i~eadlvfisvntptk 91 (481)
T KOG2666|consen 76 IKEADLVFISVNTPTK 91 (481)
T ss_pred hhhcceEEEEecCCcc
Confidence 9999999999887764
No 291
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.019 Score=49.98 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999998 999999873
No 292
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.06 E-value=0.0049 Score=55.94 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=60.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
..++|+|+|. |.||+.++..|..-|. +|..+|..+.... .... . ....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~--~~~~------~---~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP--GVQS------F---AGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC--Ccee------e---cccccHHHHHhcCCEEEECCCC
Confidence 4579999998 9999999999998888 9999997531100 0000 0 1123567899999999998532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
. + .+..++. .+.+....|++++|+++
T Consensus 201 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 201 T--P---------ETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred C--H---------HHHHHhH--HHHHhcCCCCcEEEECC
Confidence 1 1 1222221 23444556889999997
No 293
>PRK12744 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.024 Score=49.06 Aligned_cols=146 Identities=11% Similarity=0.120 Sum_probs=75.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c----hhHHHHHhcccCCCcEEEEecC-C---ccccc----
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYMGN-D---QLGQA---- 93 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~----~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea---- 93 (256)
.+++.|+||+|.+|..++..|+.+|. ++++++.+. . .....++.... .++..+..+ + ++.+.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHH
Confidence 35899999999999999999999997 767775431 1 11112222111 122222111 1 11111
Q ss_pred ---cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCCchHHHHHHHHHh
Q 025206 94 ---LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKKA 162 (256)
Q Consensus 94 ---l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~~~~i~~~~~~~~ 162 (256)
+...|++|++||..... ..+ ....+..|......+++.+.+.. +.+.++++ +.....
T Consensus 84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~------------ 151 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA------------ 151 (257)
T ss_pred HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc------------
Confidence 24689999999864211 112 22345567555545555554432 33444433 322221
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHHHcC
Q 025206 163 GTYNEKKLFGVTTLDVVRAKTFYAGKAN 190 (256)
Q Consensus 163 ~~~~~~kviG~t~lds~R~~~~la~~l~ 190 (256)
. .|....++.+..-...+-+.+++.++
T Consensus 152 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~ 178 (257)
T PRK12744 152 F-TPFYSAYAGSKAPVEHFTRAASKEFG 178 (257)
T ss_pred c-CCCcccchhhHHHHHHHHHHHHHHhC
Confidence 0 12223344543334466677888775
No 294
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.05 E-value=0.0018 Score=55.48 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEEecCCCCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVPRK 109 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi~ag~~~~ 109 (256)
|+|+||+|.+|++++..|...++ +|.++=++........+.+.... .+... ....++.++++|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 78999999999999999999887 88887655322233334433211 01100 011346678999999999865432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206 110 PGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (256)
Q Consensus 110 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ 138 (256)
..+ .+..+.++++.++.+-+
T Consensus 77 --~~~-------~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 --PSE-------LEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp --CCH-------HHHHHHHHHHHHHHT-S
T ss_pred --hhh-------hhhhhhHHHhhhccccc
Confidence 112 34456677777777744
No 295
>PRK06196 oxidoreductase; Provisional
Probab=97.05 E-value=0.014 Score=52.48 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccC-CCcEEEEecCCccc-------cccCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLG-------QALED 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d~~-------eal~~ 96 (256)
+.++|.|+||+|.+|..++..|+.+|. +|++.+++.. .....++..... ...+. ...++. +....
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~---d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLA---DLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCC---CHHHHHHHHHHHHhcCCC
Confidence 345899999999999999999999998 9999988732 111222221100 00110 001111 12357
Q ss_pred CCEEEEecCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 97 SDVVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 97 aDvVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.|++|++||....+. +.....+..|... ++.+.+.+.+.. .+.||++|.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 899999998643211 1123334555443 555666665543 356666653
No 296
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.008 Score=52.09 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l 94 (256)
+.+++.|+||+|.+|+.++..|+.+|. +|++++.+.. ......+.... .++..+..+ + ++.+. +
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRG--HRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 346899999999999999999999998 8999988631 11222222111 122222111 1 11112 2
Q ss_pred CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
...|+||+++|..... ..+ ....+..|+.....+.+.+.++ ...+.++++|.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 141 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS 141 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 3579999999863211 111 2234556665555555544432 22345665553
No 297
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0065 Score=53.84 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=65.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
++||++||+ |.+|+.++.-|...+. ..+|+..|.+..+ ..++... ++ +.. +++..++.+.+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~--~~~l~~~-~g--~~~---~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEK--RAALAAE-YG--VVT---TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHH--HHHHHHH-cC--Ccc---cCcHHHHHhhCCEEEEEe-
Confidence 479999998 9999999999998883 3478887776322 1123321 11 111 234457889999999996
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
+| ..+.+++++++...++.++|-+.-.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 33 225667777776446777777776666
No 298
>PLN02712 arogenate dehydrogenase
Probab=97.04 E-value=0.0041 Score=62.04 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=57.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~ag 105 (256)
+++||+|||. |.+|..++..|...|+ +|+.+|.+.....+.++ . +.. ..++.+.+ ++||+||++..
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViLavP 117 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILLCTS 117 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEEcCC
Confidence 4679999998 9999999999998887 99999986322111111 1 221 12344434 57999999842
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIA-KY-CPNAIVNMIS 145 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~-~p~~~iiv~t 145 (256)
...+.++++.+. .+ .|+++|+.++
T Consensus 118 ----------------~~~~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 118 ----------------IISTENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred ----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence 122344555553 22 3677777665
No 299
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.013 Score=50.10 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
++++.|+|++|.+|..++..|+++|. +|++++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45799999999999999999999998 899999873
No 300
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.015 Score=51.77 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-C---cccccc-----
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-D---QLGQAL----- 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal----- 94 (256)
+.+++.|+||+|.+|+.++..|+.+|. +|++++.+.. ......+... ..++..+..+ . ++.+.+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999998 9999988632 1222222211 1122222111 1 111222
Q ss_pred --CCCCEEEEecCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206 95 --EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (256)
Q Consensus 95 --~~aDvVIi~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN 146 (256)
...|+||++||..... ..+ -...+..|+.....+.+.+.++ .+.+.+|++|.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 3579999999863211 111 2345677777777777776654 24556776664
No 301
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.04 E-value=0.011 Score=50.30 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~ 63 (256)
+++|.|+||+|++|..++..|+++|+ ++++. +.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~ 39 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDIN 39 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence 35899999999999999999999997 88887 876
No 302
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.004 Score=54.52 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+++.|+||+|.+|..++..|+.+|. +|++.+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARK 34 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence 4789999999999999999999998 99999876
No 303
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.03 E-value=0.0011 Score=57.25 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC------ch---hHHHHHhccc-CCCc------EEEEecCCccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------TP---GVAADVGHIN-TRSE------VAGYMGNDQLG 91 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~------~~---g~~~dl~~~~-~~~~------v~~~~~t~d~~ 91 (256)
.-||+|+|. |-+|++.|..++..|+ +|.|||+.+ ++ ....+|++.. ...+ +..+.+++++.
T Consensus 3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 359999996 9999999999999999 999999973 12 2233444322 1111 11223577888
Q ss_pred cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHH
Q 025206 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPI 154 (256)
Q Consensus 92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i 154 (256)
|..++|=.|=.|+ .+.+...+.+.+++++.. |.. |..|..+..|-+.
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mpS~ 127 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMPSK 127 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccChHH
Confidence 8888885553332 233566778888998887 543 3477677765444
No 304
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.03 E-value=0.0023 Score=50.81 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+..++.|+|| |.+|..++..|...|. .+|.+++++. +...+..+. ...+.... -.++.+.+.++|+||.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~-~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG----GVNIEAIP-LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT----GCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC----ccccceee-HHHHHHHHhhCCeEEEec
Confidence 3459999998 9999999999999985 5799999873 333333331 11233332 235666789999999986
Q ss_pred CCC
Q 025206 105 GVP 107 (256)
Q Consensus 105 g~~ 107 (256)
+.+
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 554
No 305
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.017 Score=49.35 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCcc----------cccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL----------GQAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~----------~eal 94 (256)
.+++.|+||+|.+|+.++..|+.+|. +|++++.+.. .....++. .++..+.. ..+. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999998 8999988631 11111111 11221111 1111 1223
Q ss_pred CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206 95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t 145 (256)
...|+||+++|...... .+ -...+..|+.....+.+.+.++- ..+.+++++
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46899999998643211 11 22346677776666777766431 223444444
No 306
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.02 E-value=0.0035 Score=57.65 Aligned_cols=74 Identities=27% Similarity=0.313 Sum_probs=43.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeCCCchhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||+|+||+|++|..++..|...+.. +++ +++.++..+....-.+..... .... . ..+.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999999877543 666 667653222211111111111 1111 1 1133344468999999863
No 307
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.02 E-value=0.0038 Score=59.71 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=59.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
+|+|||. |.+|.++|..|+.+|+ +|.++|+++.+ ..++.+... ...+.......++.+.++++|+|+++...+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~- 74 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG- 74 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCc-
Confidence 4899998 9999999999999998 99999987422 222322100 001221111113333556899999985321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
+.+.++++.+..+- ++.++|-.+|
T Consensus 75 --------------~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 75 --------------APVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence 22334445555543 6678888876
No 308
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.02 E-value=0.0055 Score=53.11 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---ccccc-------cC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQA-------LE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~ea-------l~ 95 (256)
+.+++.|+||+|.+|..++..|+..|. +|++++.+........+.... .++..+.. -+ ++.+. +.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 345789999999999999999999998 899988753222222222211 11221111 11 12222 24
Q ss_pred CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..|++|++||...... .+. ...+..|+. +.+.+.+.+.+....+.||+++.
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 5799999998643211 112 223445543 34555555554443467777764
No 309
>PRK09072 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.011 Score=51.26 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cccc---c------cc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQLG---Q------AL 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~~---e------al 94 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++++.+. ......++.. ..++..+..+ .+.. + .+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 345899999999999999999999998 899999873 1112222211 1122222111 1111 1 13
Q ss_pred CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
...|++|++||...... .+ -.+.+..|+.....+.+.+.++ .+.+.+++++.
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 46899999998643211 11 1234556655555555554432 22355666654
No 310
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.02 E-value=0.0034 Score=55.06 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
|||+|||+ |.+|++++..|...++ ..++.++|.+... ...+.+.. . .+.. ..+..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~-~-~~~~---~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF-P-KVRI---AKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc-C-CceE---eCCHHHHHHhCCEEEEEe
Confidence 58999998 9999999999988775 3456777765322 22222211 0 1222 124456778999999995
No 311
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.009 Score=51.98 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC----Ccc----cccc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN----DQL----GQAL 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t----~d~----~eal 94 (256)
+.++|.|+||+|.+|..++..|+.+| . .|++.+.+. +.....++..... .+++....+ .++ ++..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 56789999999999999999998885 6 899998863 2223334432111 122222111 111 1111
Q ss_pred --CCCCEEEEecCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 95 --EDSDVVIIPAGVPRKPGM---TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 --~~aDvVIi~ag~~~~~g~---~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.+.|++|+++|....... +. .+.+..|+. ..+.+.+.+.+... +.++++|.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS 146 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS 146 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence 379999999887532111 11 123556653 33556666665544 45555653
No 312
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=97.01 E-value=0.016 Score=50.45 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=64.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cc-------ccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------eal 94 (256)
.+++.|+|++|.+|..++..|+.+|. +|++.|.+. +.....++.... .++..+.. -++ ++ +.+
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35799999999999999999999998 899998763 222222332211 12222211 111 11 123
Q ss_pred CCCCEEEEecCCCCC-C-CC-C---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206 95 EDSDVVIIPAGVPRK-P-GM-T---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~-~-g~-~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
...|++|+++|.... + .. + -...+..|... .+.+.+.+.+ ...+.|++++...
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 457999999986421 1 11 1 12233445433 3344444443 2356677776543
No 313
>PRK07023 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.0033 Score=53.89 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+|++.|+||+|.+|..++..|+++|. +|++++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 46899999999999999999999998 899998763
No 314
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.016 Score=50.78 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-cCCc----------cccccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~eal~ 95 (256)
+++.|+||+|.+|..++..|+.+|. +|++++.+. ......++...... ...... +-.+ ..+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999997 899998863 22222333321111 011010 0011 112235
Q ss_pred CCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 025206 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPV 148 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tNPv 148 (256)
..|++|+++|..... ..+. ...+..|+.....+.+. +.+....+.|++++...
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 689999999864211 1122 23455565544444444 33333346677676543
No 315
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=97.00 E-value=0.003 Score=58.41 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-cCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~-~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||+|+||+|.||+.+...|. ++.+ ..+++++...+..+........ ...++ . .++ .+++++.|++++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~--~-~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQ--D-AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEE--c-Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5555 4688888765433332222211 11222 1 112 236899999999986
No 316
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.00 E-value=0.0027 Score=56.99 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|||++||. |.+|++++..|+..|+ +|.++|+++. ..++.... ... ..+..++.++||+||++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 48999998 9999999999999998 9999998642 12232211 111 1234567899999999853
No 317
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0057 Score=52.85 Aligned_cols=34 Identities=44% Similarity=0.497 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+++.|+||+|.+|..++..|+++|. +|+++|.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3699999999999999999999997 899999863
No 318
>PLN02503 fatty acyl-CoA reductase 2
Probab=97.00 E-value=0.0087 Score=58.98 Aligned_cols=109 Identities=19% Similarity=0.094 Sum_probs=68.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCC----chhHH-HHHhc-----------cc-----CCCcEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN----TPGVA-ADVGH-----------IN-----TRSEVAGY 84 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~----~~g~~-~dl~~-----------~~-----~~~~v~~~ 84 (256)
+.++|.|+||+||+|..++..|+..+. +.+|+++...+ +.... .++.+ .. ...++...
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 356899999999999999999886543 56788886642 11111 11111 00 01234433
Q ss_pred ecC-C---------ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206 85 MGN-D---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136 (256)
Q Consensus 85 ~~t-~---------d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~ 136 (256)
.++ . +++...++.|+||++|+... ...+..+.+..|+....++++.+.+..
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322 1 12223467999999997643 234456677889999999999887653
No 319
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.99 E-value=0.0065 Score=52.24 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=63.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LED 96 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~~ 96 (256)
++.|+|++|.+|..++..|++.|. +|++++.+. +.....++.+.. ..+..+..+ .+ +.++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 688999999999999999999998 899998763 222223333211 112222111 11 1111 235
Q ss_pred CCEEEEecCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 025206 97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 97 aDvVIi~ag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~t 145 (256)
.|+||+++|.... + +.+.. ..+..|+. +++.+.+.+.+....+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986421 1 12222 23445543 3344555555555446666655
No 320
>PRK07574 formate dehydrogenase; Provisional
Probab=96.98 E-value=0.0041 Score=58.02 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=62.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...++|+|||. |.||+.++..|..-|. +|..+|....... ..... .+.. ..++++.++.||+|+++..
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence 35579999998 9999999999998887 9999998642111 11100 1111 1256788999999999853
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd 149 (256)
.. + ++..++. .+.+....|.+++|+++ ..+|
T Consensus 258 lt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 258 LH--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred CC--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence 21 1 1111111 23344445788999987 3455
No 321
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.98 E-value=0.0078 Score=49.92 Aligned_cols=32 Identities=38% Similarity=0.675 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
||+|+|+ |.+|+.++..|+..|. .+++|+|.+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFD 32 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 6899998 9999999999999886 589999987
No 322
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.021 Score=49.51 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=64.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cc-------ccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------eal 94 (256)
.+.+.|+||+|.+|..++..|+.+|. +|++.+++. +.....++.......++..+.. -++ +. +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999998 899999873 2222233332111112222211 111 11 123
Q ss_pred CCCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
...|++|++||...... .+. ...+..| ....+.+.+.+++.. .+.|+++|.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 46799999998643211 111 1223333 334555666665433 356666654
No 323
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.0016 Score=56.35 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.++|.|+||+|.+|+.++..|+..|. +|++++.+.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 446899999999999999999999998 899998763
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.96 E-value=0.0062 Score=60.04 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCc---cc-cccCCCCEEEEe
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIP 103 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~-eal~~aDvVIi~ 103 (256)
.++|.|+|. |.+|+.++..|..+++ +++++|.|+.. +..+.+...+ -+.+ +.++ ++ ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~-v~~G--Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGYK-VYYG--DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCCe-EEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence 368999998 9999999999999998 99999998422 2223322211 1111 1122 11 246799999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~ 182 (256)
-+.+ +.|. .++..+++.+|+..++.- .||.+ .+.+++.| .+.++=-+..-+.++-
T Consensus 472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence 4321 2343 355567778898766544 46655 24556555 4455544444445566
Q ss_pred HHHHHHcCCCCCcee
Q 025206 183 TFYAGKANVNVAEVN 197 (256)
Q Consensus 183 ~~la~~l~v~~~~v~ 197 (256)
...-..+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 666678899988874
No 325
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.018 Score=49.59 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l 94 (256)
.+++.|+||+|.+|..++..|+..|. +|++.+.+. ......++.+.. .++..+..+ .+ +++. .
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999998 899998863 222233333221 112222111 11 1111 2
Q ss_pred CCCCEEEEecCCCC--CC--CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
...|++|++||... .+ ..+ -...+..|+. ..+.+.+.+.+.. .+.+++++.
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 36899999998632 11 112 2334566654 4445555555433 345666654
No 326
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.94 E-value=0.025 Score=49.50 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.+++.|+||+|.+|..++..|+.+|. +|+++|.+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~ 43 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRN 43 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 345799999999999999999999998 89999987
No 327
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.016 Score=50.55 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=63.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccC-CCcEEEEecCCc-------cccccCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQ-------LGQALED 96 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d-------~~eal~~ 96 (256)
+.+++.|+||+|.+|..++..|+.+|. .|++.+.+.. .....++.+... ..++. ...+ +.+...+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999999998 8999988632 111122221100 00000 0001 1122357
Q ss_pred CCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.|++|+++|...... .+ -...+..|+. ..+.+.+.+.+.+ .+.|+++|.
T Consensus 79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 137 (273)
T PRK07825 79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS 137 (273)
T ss_pred CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 899999998643211 11 1234455654 3444455554433 456776764
No 328
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=96.94 E-value=0.0039 Score=52.89 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=66.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEec----CCcccccc-------CC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMG----NDQLGQAL-------ED 96 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal-------~~ 96 (256)
|.|+|++|++|+.++..|+++|+ +|++++.+. ......++.+... ++..... ..++.+++ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998 899998753 1222233332211 1221111 11222222 34
Q ss_pred CCEEEEecCCCCCC---C---CCHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 025206 97 SDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV 148 (256)
Q Consensus 97 aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNPv 148 (256)
.|+||+++|..... + ......+..|......+.+.+.++. ..+.++++|...
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 69999999864321 1 1123456677776666777665542 234666666443
No 329
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.94 E-value=0.0051 Score=48.07 Aligned_cols=70 Identities=30% Similarity=0.413 Sum_probs=42.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC-CCccEE-EEEeCCCchhHHHHHhccc--CCCcEEEEecCCccccccCCCCEEEEe
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRL-ALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV-~LiD~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
|||+|+|++|.+|+.++..+.+. ++ +| ..+|.+.......|+.+.. .+..+.. ++++++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~--~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF--ELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE--EEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc--EEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence 69999999999999999999884 45 54 4557653111112222111 0122322 35778888899998876
No 330
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.93 E-value=0.0056 Score=52.45 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 4569999998 9999999999999986 589999987
No 331
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.93 E-value=0.027 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.+++.|+||+|.+|+.++..|+.+|. +|++.+.+
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 35899999999999999999999997 88876543
No 332
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.93 E-value=0.0064 Score=54.05 Aligned_cols=70 Identities=26% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcC--CCccEEE-EEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~-LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
|+++||+|||. |.+|..++..|... ++ +++ ++|.+... +.++.... . .... .+++++.++++|+|++
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi 73 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVE 73 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEE
Confidence 56789999998 99999999888763 44 655 67876322 22222110 0 0011 1245667789999999
Q ss_pred ecC
Q 025206 103 PAG 105 (256)
Q Consensus 103 ~ag 105 (256)
+++
T Consensus 74 ~tp 76 (271)
T PRK13302 74 AAP 76 (271)
T ss_pred CCC
Confidence 975
No 333
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.92 E-value=0.0036 Score=60.72 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=64.1
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
|.......++|+|+|. |.+|+.+|..|..-|. +|+.||.........++ . +.. ..++.+.+++||+|
T Consensus 131 ~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV 197 (525)
T TIGR01327 131 FMGTELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFI 197 (525)
T ss_pred cCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEE
Confidence 3334445679999998 9999999999987787 99999975222222221 1 111 12567889999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (256)
Q Consensus 101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd 149 (256)
+++..... + +..++- .+.+....|.+++|+++ ..+|
T Consensus 198 ~l~lPlt~---~--------T~~li~--~~~l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 198 TVHTPLTP---E--------TRGLIG--AEELAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred EEccCCCh---h--------hccCcC--HHHHhcCCCCeEEEEcCCCceeC
Confidence 99864221 0 111110 13344445778888886 3455
No 334
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.035 Score=47.74 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~ 62 (256)
.+++.|+||+|.+|.+++..|+..|. +|++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 45899999999999999999999998 8888754
No 335
>PRK08264 short chain dehydrogenase; Validated
Probab=96.92 E-value=0.0067 Score=51.68 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccc---cCCCCE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQA---LEDSDV 99 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~ea---l~~aDv 99 (256)
+.++|.|+||+|.+|+.++..|+.+|. .+|++++.+..... + .. ..+..... ..++.+. +...|+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~-~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D-LG----PRVVPLQLDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h-cC----CceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 345899999999999999999998884 37888887632111 0 10 11221111 1122222 335899
Q ss_pred EEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 025206 100 VIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (256)
Q Consensus 100 VIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNP 147 (256)
||+++|.....+ .+ ..+.+..|......+.+.+.+. ...+.++++|..
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 134 (238)
T PRK08264 77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV 134 (238)
T ss_pred EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 999998732211 11 2233455655555555554332 234566666643
No 336
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.023 Score=49.03 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------c
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------A 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------a 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.+.+. .+....++.+.. .++..+..+ ++ +.+ .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999998 999998873 222223333211 112221111 11 111 2
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t 145 (256)
+...|++|+++|..... ..+. ...+..|+.. .+.+.+.+.+....+.+++++
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 34789999999864321 1121 2234555443 344444444443345666664
No 337
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0052 Score=55.89 Aligned_cols=73 Identities=30% Similarity=0.433 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHH-HHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
++||+|+||+|.||+.+...|.++.+ +.++.++-..+..|.. .++..-... +.- ...+ ...++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~--v~~--~~~~-~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIG--VPE--DAAD-EFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcccc--Ccc--cccc-ccccccCCEEEEeCc
Confidence 46899999999999999999998543 6677777655433332 444322111 110 0112 235679999999986
No 338
>PRK05855 short chain dehydrogenase; Validated
Probab=96.89 E-value=0.01 Score=57.17 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------- 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.+.+. +.....++..... .+..+.. -++ +.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999998 899999873 2222233332111 1222111 011 1111
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|++|++||..... ..+. ...+..|+. ..+.+.+.+.+.+..+.||++|.
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 23579999999875321 1122 223445643 34445555655555567777764
No 339
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.89 E-value=0.0045 Score=57.34 Aligned_cols=72 Identities=24% Similarity=0.250 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-cCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~-~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|++|+|+||+|+||.-+...++ ++.+ ..+++++...+..+...++... ...... ..+ .+.++++|+||++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence 3699999999999999997444 4444 4568887654322222222221 111111 122 245789999999875
No 340
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.89 E-value=0.015 Score=58.48 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=58.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
.||+|||+ |.+|.+++..+...|+..+|+.+|.+.... ....+.... .. ...++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~--~~a~~~g~~--~~---~~~~~~~~~~~aDvVilavp~-- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSL--ELAVSLGVI--DR---GEEDLAEAVSGADVIVLAVPV-- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHH--HHHHHCCCC--Cc---ccCCHHHHhcCCCEEEECCCH--
Confidence 58999998 999999999999888544799999874221 111111110 00 123556778999999998531
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t 145 (256)
..+.++++.+.++. ++.+++.++
T Consensus 74 --------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 --------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 12455556666554 555554444
No 341
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.88 E-value=0.0025 Score=53.43 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe--cCCccccccCCCCEEEE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII 102 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~eal~~aDvVIi 102 (256)
+.+++.|+|++|.+|..++..|+..+. +|++++.+. +.....++.+. ....+.... ...++.++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 446899999889999999999998886 999998763 22222223211 111122111 11234467899998888
Q ss_pred ecC
Q 025206 103 PAG 105 (256)
Q Consensus 103 ~ag 105 (256)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 753
No 342
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.88 E-value=0.012 Score=50.54 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~ 62 (256)
.++|.|+||+|++|++++..|+++|. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 46899999999999999999999998 7776543
No 343
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.87 E-value=0.0086 Score=51.77 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCC---cccc-------ccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQ-------ALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~---d~~e-------al~ 95 (256)
+.+++.|+||+|.+|..++..|++.|. +|++.+.... ....++.+.. +..+. +-+ ++.+ .+.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFG 78 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999998 8888765421 1112222211 11111 001 1112 234
Q ss_pred CCCEEEEecCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..|++|+++|..... ..+. ...+..|+.- .+.+.+.+.+.. .+.+|++|.
T Consensus 79 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS 138 (255)
T PRK06463 79 RVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS 138 (255)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence 689999999874321 1122 2234455444 566666665433 456666653
No 344
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.87 E-value=0.003 Score=53.60 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||.|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 4569999998 9999999999999985 699999987
No 345
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.87 E-value=0.016 Score=49.42 Aligned_cols=114 Identities=22% Similarity=0.211 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--cCCCcEEEEecC-Cc---cccc-------cC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NTRSEVAGYMGN-DQ---LGQA-------LE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--~~~~~v~~~~~t-~d---~~ea-------l~ 95 (256)
+++.|+|++|.+|+.++..|+.+|. .|++.|.+.. ....++... ....++.....+ .+ +.++ +.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999997 8999988632 111111110 011122222211 11 1111 23
Q ss_pred CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN 146 (256)
..|++|+++|..... ..+ -...+..|+.....+ .+.+.+. +.+.++++|.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss 139 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISS 139 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECC
Confidence 589999999864211 111 123345555544444 4444443 3456777764
No 346
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.028 Score=48.76 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCceEEEEcCCC-CcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG-~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.+++.|+||+| .+|..++..|+.+|. +|++.|.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~ 51 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIH 51 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCC
Confidence 346899999977 599999999999998 89999876
No 347
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.86 E-value=0.047 Score=47.12 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=65.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQA 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~ea 93 (256)
+.++|.|+||+|.+|..++..|+.+|. +++++|.+. ......++.+.. .++..+..+ ++ + .+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999997 899998763 222223333211 112111111 11 1 122
Q ss_pred cCCCCEEEEecCCCCC--CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRK--PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~--~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
+...|++|+++|.... ...+.. +.+..|+.-...+.+.+..+ ...+.++++|.
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3467999999985321 112222 23566666555555554422 23345666654
No 348
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.0084 Score=51.66 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.++|.|+||+|.+|+.++..|+..|. +|++.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~ 42 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRR 42 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 346899999999999999999999998 89999886
No 349
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.85 E-value=0.0061 Score=55.79 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
++||+|+||+|++|..++..|..+++ ..|+..+-..+..+...++.. ..+... ..+ ..+++++|+||++.|.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~--d~~-~~~~~~vDvVf~A~g~ 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE--DLT-TFDFSGVDIALFSAGG 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe--eCC-HHHHcCCCEEEECCCh
Confidence 46999999999999999999998765 236777754432233222221 122221 111 1356799999998753
No 350
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.038 Score=47.65 Aligned_cols=113 Identities=10% Similarity=0.114 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~ 95 (256)
+++.|+||+|.+|..++..|+..|. .|++.|.+. +.....++.... .++..+..+ ++ +++ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998 899999873 222223332211 122222111 11 111 124
Q ss_pred CCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 025206 96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 96 ~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~t 145 (256)
..|++|+++|.... + ..+. ...+..|+... +.+.+.+.+..+.+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 67999999985321 1 1222 23455565443 44444433333456777776
No 351
>PRK07985 oxidoreductase; Provisional
Probab=96.85 E-value=0.014 Score=52.00 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHH-HhcccCCCcEEEEec-CCc---c-------c
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAAD-VGHINTRSEVAGYMG-NDQ---L-------G 91 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~d-l~~~~~~~~v~~~~~-t~d---~-------~ 91 (256)
+.+++.|+||+|.+|.+++..|+.+|. +|++.+.++.. ....+ +.+.. .++..+.. -++ + .
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 335899999999999999999999998 89888764211 11111 11111 11221111 111 1 1
Q ss_pred cccCCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206 92 QALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (256)
Q Consensus 92 eal~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN 146 (256)
+.+...|++|+.||.... + ..+. ...+..|+.....+.+.+.++- ..+.||++|.
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 223467999999985321 1 1122 3345667665555555554432 3466777764
No 352
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.85 E-value=0.0042 Score=49.70 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.++|+|+|+ |.+|..++..|...+ ..+|.++|.+.. ...+.++.... .... ..++.+.++++|+||++.
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeCc
Confidence 3568999998 999999999998876 348999998732 22222222110 0011 124455689999999997
Q ss_pred CCCC
Q 025206 105 GVPR 108 (256)
Q Consensus 105 g~~~ 108 (256)
+.+.
T Consensus 90 ~~~~ 93 (155)
T cd01065 90 PVGM 93 (155)
T ss_pred CCCC
Confidence 6543
No 353
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.83 E-value=0.0081 Score=54.89 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.++|+|||. |.+|.+++..|...|+ +|+..+.+....... ..... +. ..+..+++++||+|+++.
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~----~~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FE----VLTVAEAAKWADVIMILL 81 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Ce----eCCHHHHHhcCCEEEEcC
Confidence 4569999998 9999999999999998 888877652211111 11111 11 124567899999999985
No 354
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.83 E-value=0.002 Score=50.93 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
..||+|+|+ |.+|+.++..|+..|. .++.|+|.+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDD 35 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCc
Confidence 358999998 9999999999999886 699999987
No 355
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.015 Score=50.12 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.+++.|+||+|.+|.+++..|+..|. .|+++|.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~ 41 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRK 41 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 35799999999999999999999997 99999986
No 356
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.83 E-value=0.037 Score=47.35 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=61.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------ 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------ 94 (256)
.+++.|+||+|.+|..++..|+.+|. +|++. +.+. ......++.... ..+..+..+ + ++.+++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999997 77764 4332 122222232211 112222111 1 111222
Q ss_pred -CCCCEEEEecCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tN 146 (256)
...|+||+.+|.... + ..+.. ..+..|......+++.+.++. +.+.++++|.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS 141 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS 141 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 368999999985321 1 11111 124456554445555544432 3356666664
No 357
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.049 Score=47.54 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=66.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------C
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------E 95 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------~ 95 (256)
.+.+.|+||+|.+|..++..|+..|. +|++.|.+. +.....++.... ..++..+..+ + ++++.+ .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 34689999999999999999999998 899999873 222223332211 1122222111 1 122222 3
Q ss_pred CCCEEEEecCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 96 DSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..|++|+++|.+... ..+.. ..+..| +...+.+.+.+++.. .+.||++|.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS 144 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS 144 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 589999999865321 11222 233444 345666777776543 456776664
No 358
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.82 E-value=0.0071 Score=58.17 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc----cCCCcEEEEecCCccccccC---CCCE
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV 99 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~----~~~~~v~~~~~t~d~~eal~---~aDv 99 (256)
+.++|++||. |.+|+++|..|+.+|+ +|..+|+...+ +.++.+. ... .+.. ..++++.++ .+|+
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~-~~~~---a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNL-PLYG---FKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCc-cccc---CCCHHHHHhcCCCCCE
Confidence 4568999998 9999999999999999 99999987422 2222221 110 1111 223444444 5999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (256)
Q Consensus 100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN 146 (256)
||++...+ +.+.+++..+... .|..++|-.||
T Consensus 76 Ii~~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT 108 (493)
T PLN02350 76 VIILVKAG---------------APVDQTIKALSEYMEPGDCIIDGGN 108 (493)
T ss_pred EEEECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCC
Confidence 99985322 2233333344444 36677777776
No 359
>PLN03139 formate dehydrogenase; Provisional
Probab=96.82 E-value=0.0079 Score=56.14 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|||. |.||+.++..|..-|. +|..+|......... .+.. +.. ..++++.+++||+|+++.
T Consensus 196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g----~~~---~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG----AKF---EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC----cee---cCCHHHHHhhCCEEEEeC
Confidence 345679999998 9999999999987777 999999863211111 1111 111 125678899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd 149 (256)
... + .+..++. .+.+....|.+++|+++ ..+|
T Consensus 264 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 264 PLT--E---------KTRGMFN--KERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred CCC--H---------HHHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence 321 1 1111221 23444456889999886 3455
No 360
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.016 Score=49.10 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCcccc---ccC--CCCEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQ---ALE--DSDVVII 102 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~e---al~--~aDvVIi 102 (256)
+++.|+|++|.+|+.++..|+.+|. +|+++|.+... ..++...... .+..- ....++++ .+. ..|+||+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999999998887 89999987321 1122211100 01100 00111112 122 4899999
Q ss_pred ecCCCCC---C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206 103 PAGVPRK---P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN 146 (256)
Q Consensus 103 ~ag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN 146 (256)
++|.... + ..+. ...+..|+.....+.+.+.++- ..+.+++++.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 9987521 1 1122 3345667666556665555432 2345555554
No 361
>PRK08589 short chain dehydrogenase; Validated
Probab=96.80 E-value=0.029 Score=49.16 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-C---cccc-------cc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------AL 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------al 94 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++++.+. +.....++.+.. .++..+..+ + ++.+ .+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 345899999999999999999999998 999999872 222233333211 112211110 1 1111 22
Q ss_pred CCCCEEEEecCCCCCCC---C-CH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 025206 95 EDSDVVIIPAGVPRKPG---M-TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~-~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
...|++|++||.....+ + +. ...+..|+. +.+.+.+.+.+. .+.||+++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 142 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF 142 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence 45799999998753211 1 11 223344543 344555555433 3677777643
No 362
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.0081 Score=52.02 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=63.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-D---QLGQA------- 93 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea------- 93 (256)
.+++.|+||+|++|.+++..|+..|. ++++.+... .......+.+.. .++..+..+ + ++.++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999997 888776542 111112222111 123222211 1 11222
Q ss_pred cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 025206 94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS 145 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~t 145 (256)
+...|+||++||..... ..+ -...+..|+.-...+.+.+.++. ..+.+++++
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~ 145 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI 145 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence 23579999999864321 112 23346667665555555555433 234555543
No 363
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.049 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+|++|.+|..++..|+.+|. +|++++.+.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 346899999999999999999999998 899999874
No 364
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.029 Score=49.96 Aligned_cols=115 Identities=24% Similarity=0.287 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-cCCc---cc-------cc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------ea 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.+.+. +.....++.. ...+..+. +-+| +. +.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 899999873 2222222321 11121111 0111 11 12
Q ss_pred cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN 146 (256)
+...|+||++||..... ..+. ...+..|+.....+++.+.++- ..+.|+++|.
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35689999999864311 1111 2335556554444444443321 2456666663
No 365
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.035 Score=47.85 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN-D---QLGQAL------- 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------- 94 (256)
+..++.|+||+|.+|..++..|+++|. ++++.+.+... ....++.... .++..+..+ + ++.+.+
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 345899999999999999999999997 88888876421 2223332211 112222211 1 122222
Q ss_pred CCCCEEEEecCCCCCCC--C---CHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 025206 95 EDSDVVIIPAGVPRKPG--M---TRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS 145 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g--~---~r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~t 145 (256)
...|+||+++|...... . +-.+.+..|+.....+.+.+.++- ..+.++++|
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 36799999998643221 1 122345566655444544443321 234555554
No 366
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.77 E-value=0.0025 Score=55.41 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+|++|.+|..++..|+.+|. +|++.|.+.
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 345799999999999999999999998 999998863
No 367
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.77 E-value=0.018 Score=49.38 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|++|+.++..|+.+|. +|+++|.+.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 345899999999999999999999998 999998764
No 368
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.77 E-value=0.022 Score=49.44 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|.+|..++..|++.|. +|+++|.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999998 999999863
No 369
>PLN02712 arogenate dehydrogenase
Probab=96.76 E-value=0.0084 Score=59.82 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~a 104 (256)
+++||+|||. |.+|.+++..|...|+ +|+.+|.+.....+.+ .. +.. ..++.+.+. ++|+||++.
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----CeE---eCCHHHHHhcCCCEEEECC
Confidence 5689999998 9999999999998887 8999998732111111 11 111 124445554 599999985
No 370
>PRK08324 short chain dehydrogenase; Validated
Probab=96.76 E-value=0.023 Score=56.86 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=64.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------ 94 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------ 94 (256)
..++|.|+||+|.+|..++..|+.+|. +|+++|++. +.....++... ..+..+..+ + ++.+++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 899999873 22222222221 112211111 1 112222
Q ss_pred -CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 95 -EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 -~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
.+.|+||+++|...... .+. ...+..|.... +...+.+++....+.+++++.
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 36899999998643211 111 12344454444 444554444433356666653
No 371
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.76 E-value=0.055 Score=45.95 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc------cccccCCCCEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ------LGQALEDSDVVI 101 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d------~~eal~~aDvVI 101 (256)
|+|.|+||+|.+|..++..|++++....+.+.+.+.... ..+ .++..+..+ ++ +.+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999999885422666665542211 111 112111110 11 223456899999
Q ss_pred EecCCCC
Q 025206 102 IPAGVPR 108 (256)
Q Consensus 102 i~ag~~~ 108 (256)
+++|...
T Consensus 73 ~~aG~~~ 79 (235)
T PRK09009 73 NCVGMLH 79 (235)
T ss_pred ECCcccc
Confidence 9999753
No 372
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.014 Score=53.21 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---ccccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~ea------- 93 (256)
+.++|.|+||+|.+|..++..|+.+|. +|++++.+. +.....++.... ..+..... -+ +++++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 899999873 222223333221 11221110 11 11111
Q ss_pred cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|++|.+||...... .+ -...+..|+.. .+.+.+.+.+.. .+.+|+++.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS 143 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS 143 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 246899999998643211 11 12334555433 344444454433 356666653
No 373
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.0048 Score=52.38 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+++.|+|++|.+|+.++..|+..|. +|+++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999998 999999874
No 374
>PLN02928 oxidoreductase family protein
Probab=96.73 E-value=0.0056 Score=56.34 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH--hcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
....++|+|+|. |.||+.+|..|..-|. +|+.+|..........+ ................++++.++.||+|++
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 345579999998 9999999999987787 99999975211111111 000000000000012367789999999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.... + .+-.++. .+.+....|.+++|+++
T Consensus 233 ~lPlt--~---------~T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 233 CCTLT--K---------ETAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCCC--h---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence 86321 1 1111111 23444456889999997
No 375
>PRK12743 oxidoreductase; Provisional
Probab=96.72 E-value=0.049 Score=47.09 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------cc
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL 94 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al 94 (256)
.++.|+||+|.+|..++..|+.+|. +|++.+.. . ......++.... ..+..+..+ ++ +++ .+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999998 88887543 2 122222332211 122222111 11 111 12
Q ss_pred CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206 95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN 146 (256)
...|++|+++|...... .+ -...+..|+.....+.+. +.+....+.+|++|.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 45799999998643211 11 123345565544444443 333333466777765
No 376
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.037 Score=48.55 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+++.+.|+||+|++|.+++..|+.+|. +|++++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~ 43 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF--PVALGARR 43 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 345799999999999999999999998 89888875
No 377
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.72 E-value=0.0032 Score=54.52 Aligned_cols=99 Identities=22% Similarity=0.362 Sum_probs=62.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCcc--EEEEEeCCC----chh-----HHHHHhcccCCCcEEEEecCCccccccC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALE 95 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~--eV~LiD~~~----~~g-----~~~dl~~~~~~~~v~~~~~t~d~~eal~ 95 (256)
+.+||.|+|| |..|..++..|...|. + +|+++|++. .+. ...++.+....... ..++.++++
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~ 96 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALK 96 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHh
Confidence 4469999998 9999999999998886 4 799999972 111 11222221100011 125667889
Q ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~ 150 (256)
++|++|-+-+ +|. +. .+..+.+ +++.+++..+||...
T Consensus 97 ~~dvlIgaT~----~G~-----~~------~~~l~~m---~~~~ivf~lsnP~~e 133 (226)
T cd05311 97 GADVFIGVSR----PGV-----VK------KEMIKKM---AKDPIVFALANPVPE 133 (226)
T ss_pred cCCEEEeCCC----CCC-----CC------HHHHHhh---CCCCEEEEeCCCCCc
Confidence 9999998854 233 10 2333333 366777788899753
No 378
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.72 E-value=0.0085 Score=53.02 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+|||+|||. |.+|..++..+...+ -+.-+.++|.+... ..++.+. .. ...+ +++++.+.++|+|+++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~-~~--~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASK-TG--AKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHh-cC--CeeE---CCHHHHhcCCCEEEEcCC
Confidence 479999998 999999998887754 22235577876321 1222221 11 1222 255566689999999964
No 379
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.71 E-value=0.0068 Score=54.07 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=44.2
Q ss_pred EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+||. |.+|.+++..|+..|+ +|.++|+++.. ..++.... ... +.++.+++++||+||++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 5798 9999999999999998 99999987422 22333221 111 2355678999999999964
No 380
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.041 Score=49.31 Aligned_cols=114 Identities=20% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-----------CCccccc
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-----------NDQLGQA 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-----------t~d~~ea 93 (256)
....|.|+||++-+|..+|..++.+|. .+++.|+++ ....+..+.+.. .++.+.+ ...+++.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 456889999988999999999999997 999999994 222233333221 1221211 1124466
Q ss_pred cCCCCEEEEecCCCC-CCC--CCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPR-KPG--MTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~-~~g--~~r~d---~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
..+.|++|..||... ++. .++.+ .++-| ..+++.+.+.+.+.+ ++.|+.++.
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS 173 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIAS 173 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehh
Confidence 789999999999643 322 22222 12333 567788899888765 566665553
No 381
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.71 E-value=0.04 Score=47.74 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEe-cCCc---ccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQ------- 92 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~e------- 92 (256)
+.+++.|+||+|.+|..++..|+.+|. .|++...+.. .....++.+.. .++..+. +-++ +.+
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999997 7877765421 22222332211 1122111 1111 111
Q ss_pred ccCCCCEEEEecCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 93 ALEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~---g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.+...|++|+.+|..... ..+.. ..+..|+. ..+.+.+.+.+....+.++++|.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 123579999999864321 11122 23455643 33455666666555566776664
No 382
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.043 Score=49.96 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------- 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------- 93 (256)
+.++|.|+||+|.+|..++..|+.+|. +|++++.+. +.....++.... .++..+..+ +| ++++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 899999863 222233333211 112211111 11 2222
Q ss_pred cCCCCEEEEecCCCCCC--C-CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 94 LEDSDVVIIPAGVPRKP--G-MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 94 l~~aDvVIi~ag~~~~~--g-~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
+...|++|+++|..... . .+.. ..+..| +...+.+.+.+.+.. .+.+|+++.
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 34689999999864211 1 1111 223333 344556666665543 356666653
No 383
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.015 Score=50.31 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.+.+.|+|++|.+|..++..|++.|. +|++.|.+
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~ 41 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLR 41 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 345789999999999999999999998 99999876
No 384
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0064 Score=50.59 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
|++.|+||+|.+|..++..|+++ . +|++.+.+.. ....|+.+.. .+. .+.+.+...|++|.++|...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~~ 67 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKVH 67 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCCC
Confidence 47999999999999999999887 4 8999887531 1112332211 000 01112347899999998643
Q ss_pred CC---CCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206 109 KP---GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (256)
Q Consensus 109 ~~---g~~r~d---~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t 145 (256)
.. ..+..+ .+..|+.....+.+...++- +.+.++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 11 112222 24455544444454444332 345566665
No 385
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0042 Score=56.65 Aligned_cols=74 Identities=27% Similarity=0.310 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCC--cEEEEecCCcccc-ccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQ-ALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~e-al~~aDvVIi~a 104 (256)
++||+|+||+|+.|.-+...|..++.+ |+.++...+..|....-.|..... .++.. +.+..+ ..++||+||.+-
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEec
Confidence 679999999999999999999988865 688887664344433333333221 12211 112222 245699999984
No 386
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.68 E-value=0.0037 Score=57.33 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|||+ |.+|+.++..|+..|+ .+|.|+|.+
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRD 57 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence 4568999998 9999999999999996 699999987
No 387
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.68 E-value=0.0079 Score=54.45 Aligned_cols=100 Identities=22% Similarity=0.347 Sum_probs=62.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..++|+|+|+ |.+|..++..|...+. .+|.++|.+.. ...+..+. ..... ..++.+.+.++|+||.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence 4569999998 9999999998887553 48999998732 22222221 11111 124567789999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~ 150 (256)
+.+.. . ....+..+. ...+..+++-+++|-|+
T Consensus 247 ~~~~~-----~-------~~~~~~~~~--~~~~~~~viDlavPrdi 278 (311)
T cd05213 247 GAPHY-----A-------KIVERAMKK--RSGKPRLIVDLAVPRDI 278 (311)
T ss_pred CCCch-----H-------HHHHHHHhh--CCCCCeEEEEeCCCCCC
Confidence 65521 1 111222111 11245688889999884
No 388
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0055 Score=55.88 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=49.7
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
|-......++|+|||. |.||+.++..+..-|. +|..||......... .+. .. ...++.+.++.||+|
T Consensus 135 ~~g~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~~-----~~---~~~~Ld~lL~~sDiv 201 (324)
T COG0111 135 FRGTELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VDG-----VV---GVDSLDELLAEADIL 201 (324)
T ss_pred cccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--ccc-----ce---ecccHHHHHhhCCEE
Confidence 3333434679999998 9999999999998888 999999842221111 110 11 123577899999999
Q ss_pred EEec
Q 025206 101 IIPA 104 (256)
Q Consensus 101 Ii~a 104 (256)
++..
T Consensus 202 ~lh~ 205 (324)
T COG0111 202 TLHL 205 (324)
T ss_pred EEcC
Confidence 9975
No 389
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.67 E-value=0.0033 Score=57.61 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+++||+|+||+|++|.-+...|.++++ ..++.++-..+..|....+.. . .+... ..+. ++++++|+||++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~~--~~~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRVR--EVDS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEEe--eCCh-HHhcCCCEEEEcCC
Confidence 457999999999999999999996554 346767754422232222222 1 12211 1121 24689999999864
No 390
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.66 E-value=0.018 Score=54.72 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+.+||.|+|. |..|.+ +|..|...|. +|.+.|.+... ...+|.... +..+.+. + .+.++++|+||.+.|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~-~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-D-AENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-C-HHHCCCCCEEEECCC
Confidence 4468999999 999999 7999999998 99999987432 122344322 2222222 2 345779999999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~ 163 (256)
.|...- ........+++++.+ .+.+.+..++..+|-+| |==.+++.+++++++..|
T Consensus 76 i~~~~~-~~~~a~~~~i~i~~~-~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 76 IPDDNP-ELVAARELGIPVVRR-AEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCCCH-HHHHHHHCCCcEEeH-HHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 874321 111222334444422 11122222122244454 543444557777888776
No 391
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.021 Score=51.22 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------ 93 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------ 93 (256)
+.+++.|+||+|.+|..++..|+.+|. +|++.|... ......++.... .++..+..+ .+ +.+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999998 899998752 222223333211 122222111 11 1111
Q ss_pred cCCCCEEEEecCCCC
Q 025206 94 LEDSDVVIIPAGVPR 108 (256)
Q Consensus 94 l~~aDvVIi~ag~~~ 108 (256)
+...|++|++||...
T Consensus 87 ~g~iD~li~nAG~~~ 101 (306)
T PRK07792 87 LGGLDIVVNNAGITR 101 (306)
T ss_pred hCCCCEEEECCCCCC
Confidence 246899999999754
No 392
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.033 Score=49.02 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=60.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cccc------cCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQA------LEDS 97 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------l~~a 97 (256)
.+.|+|+ |.+|..++..|. .|. +|++.|.+. +.....++.+.. .++..+.. -.+ +.++ +...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4556676 899999999996 676 999999863 222222332211 11221211 011 1111 2468
Q ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP 147 (256)
Q Consensus 98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP 147 (256)
|++|++||.... ..+..+.+..|+.....+.+.+.+.- +++.+++++..
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~ 127 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQ 127 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 999999997522 23345566777665555555544432 23444555433
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.63 E-value=0.021 Score=48.53 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.+||.|||+ |.||...+..|...|. +|++++..... ...++.+.. .+........ ++.+.++|+||.+-
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcC
Confidence 4569999999 9999999999998886 99999764222 222333221 2322221222 35789999988874
No 394
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.60 E-value=0.0072 Score=58.66 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
.....++|+|+|. |.+|+.+|..|..-|. +|+.||.........++ . +.. . ++.+.++.||+|+++
T Consensus 136 ~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~-~l~ell~~aDiV~l~ 201 (526)
T PRK13581 136 VELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL---G----VEL---V-SLDELLARADFITLH 201 (526)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---E-cHHHHHhhCCEEEEc
Confidence 3445679999998 9999999999998887 99999975322221111 1 221 1 466889999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd 149 (256)
..... ++ ..++ | . +.+....|++++|+++ ..+|
T Consensus 202 lP~t~---~t-~~li--~----~---~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 202 TPLTP---ET-RGLI--G----A---EELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred cCCCh---Hh-hcCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence 64321 00 1111 1 1 2333445788888886 3455
No 395
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.59 E-value=0.0073 Score=55.43 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||.|+|+ |.+|+.++..|+..|. .+|.++|.+
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRD 57 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 4569999998 9999999999999996 699999987
No 396
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.59 E-value=0.0044 Score=51.42 Aligned_cols=100 Identities=23% Similarity=0.432 Sum_probs=62.0
Q ss_pred cCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCE
Q 025206 20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV 99 (256)
Q Consensus 20 ~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDv 99 (256)
.+........+|+|+|. |.+|+.+|..+..-|. +|+.+|....... ...+.. +. ..++++.++.||+
T Consensus 28 ~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDi 94 (178)
T PF02826_consen 28 RFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADI 94 (178)
T ss_dssp TTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SE
T ss_pred CCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhh
Confidence 34444556689999998 9999999999998888 9999998743222 111111 21 1256788999999
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 100 VIIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 100 VIi~ag~-~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
|+++... ++..+. + | ++. +....+++++|+++-
T Consensus 95 v~~~~plt~~T~~l-----i--~----~~~---l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 95 VSLHLPLTPETRGL-----I--N----AEF---LAKMKPGAVLVNVAR 128 (178)
T ss_dssp EEE-SSSSTTTTTS-----B--S----HHH---HHTSTTTEEEEESSS
T ss_pred hhhhhcccccccee-----e--e----eee---eeccccceEEEeccc
Confidence 9998642 222221 1 1 122 233457889999874
No 397
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.58 E-value=0.019 Score=49.14 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~ 62 (256)
++|.|+||+|.+|+.++..|+.+|. +|++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 4799999999999999999999997 7877654
No 398
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.58 E-value=0.012 Score=53.66 Aligned_cols=99 Identities=23% Similarity=0.460 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++++|+|. |.||+.+|..+..-|. +|..+|..+......++. .+ +. ++.+.++.||+|++.+
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~~-------~~-y~---~l~ell~~sDii~l~~ 208 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKELG-------AR-YV---DLDELLAESDIISLHC 208 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhcC-------ce-ec---cHHHHHHhCCEEEEeC
Confidence 445679999998 9999999999984455 999999875311111111 11 11 3568899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~ 150 (256)
... + + |-.++- .+.+++..|.+++||++= =+|.
T Consensus 209 Plt--~-~--------T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe 243 (324)
T COG1052 209 PLT--P-E--------TRHLIN--AEELAKMKPGAILVNTARGGLVDE 243 (324)
T ss_pred CCC--h-H--------HhhhcC--HHHHHhCCCCeEEEECCCccccCH
Confidence 321 1 1 111111 123444568899999873 3563
No 399
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.58 E-value=0.0069 Score=54.28 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
...+|+|+|+ |.+|..++..|...|. +|+++|++.... ....... ..... ..++.+.++++|+||.+.
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG----LIPFP-LNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Ceeec-HHHHHHHhccCCEEEECC
Confidence 4569999998 9999999999998887 999999863211 1111111 11111 124567889999999985
No 400
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.14 Score=43.85 Aligned_cols=115 Identities=10% Similarity=0.124 Sum_probs=64.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-c---CCccc-------ccc
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLG-------QAL 94 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~---t~d~~-------eal 94 (256)
.+.+.|+||++.+|..++..|+++|. +|++++.+. ++....++.... .++..+. + ..+++ +.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998 899998873 222222232211 1121111 0 11111 123
Q ss_pred C-CCCEEEEecCCCCCCC----CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206 95 E-DSDVVIIPAGVPRKPG----MTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 ~-~aDvVIi~ag~~~~~g----~~r~d---~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
. ..|++|.++|....++ .+..+ .+..|. ...+.+.+.+.+....+.|+++|.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4 6899999997432211 12222 222332 334455666665544567777764
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.015 Score=55.00 Aligned_cols=126 Identities=24% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH---HHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
+.++|.|+|+ |.+|..+|..|+..|. +|+++|.+..... ..++... .++.+.+.. ..+...++|+||.+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEEC
Confidence 3468999998 8899999999999998 9999998742111 2223211 122222221 12345789999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG 163 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~ 163 (256)
+|.+.... .....-+.+++++......... .+ ..+|-+|-.. .+++.+++.+++..|
T Consensus 76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 88642211 1111123345555443332222 22 3355555443 344446667776654
No 402
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.54 E-value=0.02 Score=56.77 Aligned_cols=138 Identities=13% Similarity=0.179 Sum_probs=85.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcc----ccccCCCCEEEEe
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP 103 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~eal~~aDvVIi~ 103 (256)
..+|.|+|. |.+|+.++..|..+++ +++++|.|+.. +..+.+...+ -+.+ +.++. +..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~-v~~G--Dat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGMK-VFYG--DATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCCe-EEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence 368999998 9999999999999998 99999998422 2222222211 1111 11221 1346799999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t-NPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~ 182 (256)
-..+ +.|. .++..+++..|+..++.-+ |+.. .+.+++.| .+.++--+...+.++-
T Consensus 472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence 4221 2343 3455666678887665544 4433 23444444 4455544555566777
Q ss_pred HHHHHHcCCCCCcee
Q 025206 183 TFYAGKANVNVAEVN 197 (256)
Q Consensus 183 ~~la~~l~v~~~~v~ 197 (256)
+.+-+.+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 528 RLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHcCCCHHHHH
Confidence 777788999887764
No 403
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.54 E-value=0.0014 Score=60.75 Aligned_cols=72 Identities=26% Similarity=0.318 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEEec
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi~a 104 (256)
|.|+|+ |++|+.++..|++.+...+|++.|.+..+ .....+. ..++.... ...++.+.++++|+||.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL----GDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T----TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc----ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 99999999999988865699999998422 2211111 11222221 1123567889999999998
Q ss_pred CCC
Q 025206 105 GVP 107 (256)
Q Consensus 105 g~~ 107 (256)
|..
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 643
No 404
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.53 E-value=0.01 Score=50.50 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEEEe
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVIIP 103 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVIi~ 103 (256)
+++.|+|++|.+|.+++..|+++|. +|++.|.+.... .. .++..+..+ ..+.+.+...|++|++
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 5799999999999999999999998 899998863211 00 011111110 0112235678999999
Q ss_pred cCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 104 AGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 104 ag~~~--~~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
+|... .+ ..+. ...+..|+.....+.+.+.+. .+.+.+++++.
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 127 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS 127 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 98542 11 1122 234556655444444444322 23356666653
No 405
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.52 E-value=0.022 Score=45.28 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
||.|+|+ |.+|+.++..|+..|. .++.++|.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 6899998 9999999999999997 689999976
No 406
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.51 E-value=0.012 Score=53.07 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
...|++|+|+ |.+|..++..|...|. +|..+|++.... ........ ... ...++.+.++++|+||.+.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~--~~~~~~G~--~~~---~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHL--ARITEMGL--SPF---HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHcCC--eee---cHHHHHHHhCCCCEEEECC
Confidence 4569999998 9999999999998886 999999873211 11111111 111 1124567889999999985
No 407
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.49 E-value=0.057 Score=46.09 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
..++.|+|++|.+|..++..|+.+|. +|+++|.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999997 899999873
No 408
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.48 E-value=0.048 Score=46.27 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=61.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccccC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQALE 95 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal~ 95 (256)
.+.|+||+|.+|..++..|+..|. +++++.. +. ......++.... .++..+..+ ++ + .+.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999998 8888776 32 111111222111 112222111 11 1 12234
Q ss_pred CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 025206 96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~~~iiv~tNP 147 (256)
..|+||+++|..... ..+ ..+.+..|..-... +.+.+++. +.+.++++|..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~ 138 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV 138 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence 689999999864321 111 23345556554333 44444443 33466666643
No 409
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.48 E-value=0.017 Score=52.40 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.+||+|||+ |.+|.+++..|...|+ ++++.+....... ..+.+.. ++. . +..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence 468999998 9999999999999997 7766554321111 1111111 221 2 3457889999999986
No 410
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.029 Score=55.40 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-----
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL----- 94 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal----- 94 (256)
.+.+++.|+||+|.+|..++..|+.+|. +|++++.+. +.....++.... .++..+..+ . ++++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 999999873 222222332211 122222111 1 122222
Q ss_pred --CCCCEEEEecCCCCCCC--------CCHHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206 95 --EDSDVVIIPAGVPRKPG--------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 95 --~~aDvVIi~ag~~~~~g--------~~r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN 146 (256)
...|++|++||...... ++....+..|+... +.+.+.+.+. ..+.+|++|.
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 509 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS 509 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence 36899999998642111 11223345565443 4444444443 3456666653
No 411
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.02 Score=54.81 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=78.7
Q ss_pred cccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH-hcccCCCcEEEEecCCcccc
Q 025206 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQ 92 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl-~~~~~~~~v~~~~~t~d~~e 92 (256)
.|+-|+.++... ||.|+|. |..|.+++..|...|. +|.++|.+.... .++ ... .++.+.+..+ .+
T Consensus 5 ~~~~~~~~~~~~----~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~ 70 (473)
T PRK00141 5 VPLSALPQELSG----RVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SD 70 (473)
T ss_pred ChhhhcccccCC----eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hh
Confidence 466666665544 8999998 9999999999999998 999999753211 122 221 1333332222 24
Q ss_pred ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMIS--NPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-----~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~ 163 (256)
.+.++|+||.+.|.|...- ........+++++.++.-.... +.....+|-+| |==.+++.+++.+++..|
T Consensus 71 ~~~~~d~vV~Spgi~~~~p-~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 71 QLDSFSLVVTSPGWRPDSP-LLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HhcCCCEEEeCCCCCCCCH-HHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 5789999999988874321 1222233455555544432221 22122344555 433344556777787765
No 412
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.47 E-value=0.044 Score=46.56 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
..+|.|+||+|++|+.++..|++.|. +|++++.+.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 999998863
No 413
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.46 E-value=0.0056 Score=56.32 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..++||+|+||+|++|..+...|..+++ ..++.++...+..|...+... ..+... ..+ .++++++|+||+++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~ 77 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA 77 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence 3567999999999999999999988654 347766654432222222211 112211 112 24678999999987
Q ss_pred CC
Q 025206 105 GV 106 (256)
Q Consensus 105 g~ 106 (256)
+.
T Consensus 78 p~ 79 (344)
T PLN02383 78 GG 79 (344)
T ss_pred Cc
Confidence 63
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.46 E-value=0.036 Score=48.05 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+.+++.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999998 899999873
No 415
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.45 E-value=0.056 Score=46.17 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD 61 (256)
+.+.|+|++|.+|..++..|+..|. ++++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~ 34 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC 34 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence 4689999999999999999999997 777753
No 416
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.43 E-value=0.013 Score=55.97 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
....+|+|+|. |.||..+|..+...|. +|+.+|+++...... ..+ . .+ ..++.++++.+|+||.+.|
T Consensus 252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A-~~~-G----~~----~~~leell~~ADIVI~atG 318 (476)
T PTZ00075 252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQA-AME-G----YQ----VVTLEDVVETADIFVTATG 318 (476)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHH-Hhc-C----ce----eccHHHHHhcCCEEEECCC
Confidence 34569999998 9999999999998887 899998874322110 111 1 11 1145678999999999865
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
.+ .++. .+.+....|.+++++++-.
T Consensus 319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 32 1111 1234444688999999854
No 417
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.43 E-value=0.022 Score=52.27 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEE-EEEe
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYD 61 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV-~LiD 61 (256)
++||+|+||+|++|..++..|...+.. ++ .+.|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence 479999999999999999988877543 55 4556
No 418
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.43 E-value=0.0054 Score=56.21 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.+.+||+|+||+|++|..+...|.++.+ ..+|.++-..+..|....+.. . .+.+.. . + +.++.++|+||+++
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~--~--~~~v~~-~-~-~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG--K--SVTVQD-A-A-EFDWSQAQLAFFVA 74 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC--c--ceEEEe-C-c-hhhccCCCEEEECC
Confidence 3567999999999999999999998533 348888855432233222221 1 222211 1 1 23457899999987
Q ss_pred C
Q 025206 105 G 105 (256)
Q Consensus 105 g 105 (256)
+
T Consensus 75 p 75 (336)
T PRK08040 75 G 75 (336)
T ss_pred C
Confidence 5
No 419
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.019 Score=54.45 Aligned_cols=126 Identities=22% Similarity=0.271 Sum_probs=77.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hH-HHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~-~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.+||+|+|. |.-|.+++..|...|. +|..+|.++.. .. ...+.. ..+....+..+. +...++|+||..-|
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~~~----~~i~~~~g~~~~-~~~~~~d~vV~SPG 78 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPLLL----EGIEVELGSHDD-EDLAEFDLVVKSPG 78 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhhhc----cCceeecCccch-hccccCCEEEECCC
Confidence 579999998 9999999999999997 99999987432 11 111111 123333333333 67899999999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCCchHHHHHHHHHhC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~--tNPvd~~~~i~~~~~~~~~ 163 (256)
.|...-. -.......++++-++--..+... ++.+|-+ ||==..+|.+++++++..|
T Consensus 79 i~~~~p~-v~~A~~~gi~i~~dieL~~r~~~-~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 79 IPPTHPL-VEAAKAAGIEIIGDIELFYRLSG-EAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCCCHH-HHHHHHcCCcEEeHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 7643210 11122344555555554444331 1113334 4655556668888888877
No 420
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.40 E-value=0.035 Score=42.84 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=51.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCCchhHHHHHhcccCCCc-EEEEecCCccccccCCCCEEEEecCCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVGHINTRSE-VAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~~~g~~~dl~~~~~~~~-v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
||+|+|++|.+|..++..|...+.+ ++..+ +.++..+......+...... ...+. ..+++ ..++|+||++.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCCcH
Confidence 6899998799999998888885433 55544 65432222111122111100 01110 12322 25899999985321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q 025206 108 RKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVN 149 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~~~iiv~tNPvd 149 (256)
. ..++++.+.+ ..++.++|-.|++..
T Consensus 77 ---------~-------~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 77 ---------V-------SKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred ---------H-------HHHHHHHHHhhhcCCCEEEECCcccc
Confidence 1 1122222222 346778877777654
No 421
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.11 Score=44.94 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c---ccccCCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L---GQALEDS 97 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~---~eal~~a 97 (256)
+.+++.|+|++|.+|..++..|+..|. +|++.+.+. ......++.... ..++..+..+ ++ + .+.+...
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 346899999999999999999999998 999999873 222222232211 1112222111 11 1 1234579
Q ss_pred CEEEEecCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206 98 DVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 98 DvVIi~ag~~~~-~--g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
|++|+++|.... + ..+. ...+..|+. ..+.+.+.+.+.. .+.++++|.
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 999999986421 1 1122 223455544 3444555554432 346666653
No 422
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.38 E-value=0.039 Score=52.14 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=66.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCcccc-------ccCCCCE
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQ-------ALEDSDV 99 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~e-------al~~aDv 99 (256)
..++.|+|++|.+|..++..|+.+|. +|+++|.........++.+......+..-. ...++++ .....|+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 45899999999999999999999998 899998753222222222110000111100 0011111 1236899
Q ss_pred EEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206 100 VIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (256)
Q Consensus 100 VIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN 146 (256)
||+++|..... ..+ ....+..|+.-...+.+.+.+. .+.+.++++|.
T Consensus 288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 99999865321 112 2234566766666666666542 24467777763
No 423
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.37 E-value=0.011 Score=53.03 Aligned_cols=68 Identities=24% Similarity=0.412 Sum_probs=52.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
.++|+.||- |.+|++.+..|+..|+ .|+.||+++ ..+.++.+.... +. ..+.|..++||+||.+.+.|
T Consensus 35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga~--v~-----~sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGAR--VA-----NSPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhchh--hh-----CCHHHHHhhcCEEEEEcCCh
Confidence 579999998 9999999999999999 999999874 334566654422 11 13467889999999997754
No 424
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.37 E-value=0.013 Score=51.26 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||.|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFD 57 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 4569999998 9999999999999985 699999987
No 425
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=96.36 E-value=0.012 Score=51.07 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHH----hccc--------CCCcEEEEecCC----------c
Q 025206 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADV----GHIN--------TRSEVAGYMGND----------Q 89 (256)
Q Consensus 33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl----~~~~--------~~~~v~~~~~t~----------d 89 (256)
|+||+||+|+++...|+..+...+|+++-+.+.. .....+ .+.. ...+++...++- +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 6899999999999988877652278887654311 111111 1100 123566554321 1
Q ss_pred cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+.+..+.+|+||++|+.-. -..+..++...|+.-++++++...+.... .++.+|
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iS 134 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIS 134 (249)
T ss_dssp HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEE
T ss_pred hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEec
Confidence 2233478999999987532 11234446778999999999988754433 455555
No 426
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.36 E-value=0.037 Score=48.70 Aligned_cols=67 Identities=34% Similarity=0.369 Sum_probs=42.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
++||+|+|++|.+|+.++..+...+-+ +++ ++|.+....... .. . .+.. ..++.+.++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~-elvav~d~~~~~~~~~--~~--~--~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL-ELVAAVDRPGSPLVGQ--GA--L--GVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCcccccc--CC--C--Cccc---cCCHHHhccCCCEEEECC
Confidence 479999998799999999887764323 544 477763211101 11 1 1211 346667778899999664
No 427
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.36 E-value=0.0059 Score=56.14 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHc-CCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKL-NPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~-~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+.+||+|+||+|++|+.+...|.. ..+ ..++.++...+..|+...+... .+.+.. .+ .+.++++|+||+++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf~a~ 76 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAFFSA 76 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEEECC
Confidence 347999999999999999999985 444 3458888665433333322211 232221 23 24568999999987
Q ss_pred C
Q 025206 105 G 105 (256)
Q Consensus 105 g 105 (256)
+
T Consensus 77 ~ 77 (347)
T PRK06728 77 G 77 (347)
T ss_pred C
Confidence 5
No 428
>PRK13529 malate dehydrogenase; Provisional
Probab=96.36 E-value=0.011 Score=57.19 Aligned_cols=110 Identities=23% Similarity=0.354 Sum_probs=72.7
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHc----CCCc-----cEEEEEeCCCc----h----hHHHHHhcccCCCcEEEE-
Q 025206 23 SESVPDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT----P----GVAADVGHINTRSEVAGY- 84 (256)
Q Consensus 23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~----~~~~-----~eV~LiD~~~~----~----g~~~dl~~~~~~~~v~~~- 84 (256)
.+..+..||.+.|| |..|..+|..|.. .|+- ..++++|.+-+ . .....+.+.. ..+...
T Consensus 290 g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~ 366 (563)
T PRK13529 290 GEPLSDQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWD 366 (563)
T ss_pred CCChhhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccc
Confidence 33444569999998 9999999988775 5762 48999998721 1 1111122111 111000
Q ss_pred --ecCCccccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 85 --MGNDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 85 --~~t~d~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
....++.++++++ |+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||..
T Consensus 367 ~~~~~~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 367 TEGDVISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred cccCCCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 0124678999998 8887665443 2 124788899999999999999999986
No 429
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.049 Score=46.54 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.+.|+|++|++|+.++..|+.+|. .|++.+.+
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~ 35 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY--AVCLNYLR 35 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEecCC
Confidence 589999999999999999999987 78877654
No 430
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.34 E-value=0.012 Score=49.71 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi 102 (256)
....++|+|||-+.-||.+++..|++++- .|.+.|++. .......+.|...+ ... .+.++.+.++.||+||.
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~--~~~~l~~~~~~ADIVIs 132 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTD--EEAMTLDCLSQSDVVIT 132 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccc--hhhHHHHHhhhCCEEEE
Confidence 44567999999999999999999998886 999999863 11000111221110 000 01125678899999999
Q ss_pred ecCCC
Q 025206 103 PAGVP 107 (256)
Q Consensus 103 ~ag~~ 107 (256)
++|.|
T Consensus 133 AvG~~ 137 (197)
T cd01079 133 GVPSP 137 (197)
T ss_pred ccCCC
Confidence 99876
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.34 E-value=0.017 Score=53.58 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEE-EecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~eal~~aDvVIi~ag 105 (256)
.+.||+|+|+ |.+|...+..+...|. +|..+|.+..+. ..+.... ...+.. .....++.+.++++|+||.+++
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 4568999998 9999999999998887 899999873221 1111110 011111 1111245677899999999976
Q ss_pred CC
Q 025206 106 VP 107 (256)
Q Consensus 106 ~~ 107 (256)
.|
T Consensus 240 ~~ 241 (370)
T TIGR00518 240 IP 241 (370)
T ss_pred cC
Confidence 54
No 432
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.34 E-value=0.051 Score=46.32 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=48.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
..||.|||+ |.+|..-+..|+..|- +|++++.+.. ....++.+.. ++....+.+. .+.++++|+||.+-+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 459999999 9999999999998887 9999987532 2223333221 3444333433 457899999988743
No 433
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.33 E-value=0.013 Score=51.31 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|+|+ |.+|+.++..|+..|. .++.++|.+
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence 4569999998 9999999999999985 699999987
No 434
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.31 E-value=0.0089 Score=54.50 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=54.9
Q ss_pred hhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe
Q 025206 8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM 85 (256)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~ 85 (256)
.++|-|--+-+-+++... ...+++|||+ |..|...+..+.....+.+|.++|++. ++..+.++.+. ...+..
T Consensus 109 ~~RTaA~salaa~~La~~-~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~-- 182 (325)
T TIGR02371 109 DMRTGAAGGVAAKYLARK-DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA-- 182 (325)
T ss_pred hHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE--
Confidence 344433333333344433 3568999998 999998666555444467999999984 23333334321 112332
Q ss_pred cCCccccccCCCCEEEEec
Q 025206 86 GNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 86 ~t~d~~eal~~aDvVIi~a 104 (256)
..+.++++++||+|+.+-
T Consensus 183 -~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 183 -ATDPREAVEGCDILVTTT 200 (325)
T ss_pred -eCCHHHHhccCCEEEEec
Confidence 236678999999999874
No 435
>PRK08017 oxidoreductase; Provisional
Probab=96.28 E-value=0.04 Score=47.31 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+|.|+||+|.+|..++..|+++|. +|++++.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence 699999999999999999999997 89998876
No 436
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.28 E-value=0.025 Score=53.24 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...+|+|+|+ |.+|..++..+...|. +|+.+|+++.+ ..+..+ .+ .. .+++++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G~----~~----~~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---GY----EV----MTMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---CC----EE----ccHHHHHcCCCEEEECCC
Confidence 3469999998 9999999999998887 89999987432 112211 11 11 123467889999999875
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
.+ .++.. ..+....+.+++++++.+
T Consensus 267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 32 11111 113333578899999864
No 437
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.28 E-value=0.0095 Score=55.46 Aligned_cols=63 Identities=19% Similarity=0.375 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...++|+|||. |.||+.++..|..-|. +|..+|..+... .. . .. -.++++.++.||+|++...
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~-----~~-~----~~----~~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR-----GD-E----GD----FRSLDELVQEADILTFHTP 176 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-c----cc----cCCHHHHHhhCCEEEEeCC
Confidence 35569999998 9999999999998888 999999642210 00 0 00 1256778899999998754
No 438
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.27 E-value=0.012 Score=53.15 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=61.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|+|. |.+|+.+|..+..-|. +|+.+|..... + . .... ..++++.++.||+|+++.
T Consensus 119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~----~~~~--~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G----ISSI--YMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C----cccc--cCCHHHHHhhCCEEEECC
Confidence 345579999998 9999999998877787 99999975211 0 0 0000 125678899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~ 150 (256)
... + +++ .++ | .+.+....|.+++|+++ .++|.
T Consensus 182 p~t--~-~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 182 PLT--D-ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred CCC--c-hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence 322 1 111 111 1 22333445789999997 56774
No 439
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.26 E-value=0.0086 Score=54.10 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=58.9
Q ss_pred hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcE
Q 025206 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v 81 (256)
.|-.++|-|--+-+-+++... ...+|+|+|+ |..|...+..+.. .+. .+|.++|.+. +...+.++.+.. ..+
T Consensus 103 ~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~~--~~~ 177 (304)
T PRK07340 103 TVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARALG--PTA 177 (304)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcC--Cee
Confidence 344555555444444555443 4469999998 9999998887764 453 6899999983 333444443211 112
Q ss_pred EEEecCCccccccCCCCEEEEecC
Q 025206 82 AGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 82 ~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
. ..++++++.+||+||.+-.
T Consensus 178 ~----~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 178 E----PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred E----ECCHHHHhhcCCEEEEccC
Confidence 2 1356778999999998743
No 440
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.24 E-value=0.016 Score=47.51 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=41.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.+.++|+|||.+..||.+++..|..++- .|.+.+.+ +.++++.++.||+||.++|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence 3456999999988999999999999886 77776542 2245567899999999988
Q ss_pred CC
Q 025206 106 VP 107 (256)
Q Consensus 106 ~~ 107 (256)
.|
T Consensus 89 ~~ 90 (160)
T PF02882_consen 89 KP 90 (160)
T ss_dssp ST
T ss_pred cc
Confidence 66
No 441
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.24 E-value=0.21 Score=43.23 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~ 62 (256)
+.+++.|+||++.+|..++..|+..|. +|++.+.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 446899999999999999999999998 8888754
No 442
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.23 E-value=0.0069 Score=52.32 Aligned_cols=35 Identities=34% Similarity=0.582 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|+|+ |.+|+.++..|+..|. .+++++|-+
T Consensus 20 ~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDD 54 (228)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence 4569999998 9999999999999996 699999976
No 443
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.013 Score=52.90 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
..++|+|||.+|.||.+++..|...|. .|.+++... .++++.++.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 456999999966999999999999998 899886531 1345678999999999886
Q ss_pred C
Q 025206 107 P 107 (256)
Q Consensus 107 ~ 107 (256)
+
T Consensus 213 ~ 213 (301)
T PRK14194 213 P 213 (301)
T ss_pred h
Confidence 5
No 444
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.20 E-value=0.014 Score=56.78 Aligned_cols=107 Identities=24% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHc-----CCC-----ccEEEEEeCCCc--hhHHHH-Hhcc--cCCCcEEEEecC
Q 025206 23 SESVPDRKVAVLGAAGGIGQPLALLMKL-----NPL-----VSRLALYDIANT--PGVAAD-VGHI--NTRSEVAGYMGN 87 (256)
Q Consensus 23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~-----~~~-----~~eV~LiD~~~~--~g~~~d-l~~~--~~~~~v~~~~~t 87 (256)
.+..+..||.+.|| |..|..++..|.. .|+ -..++++|.+-+ .+. .| |.+. .+-.... ..
T Consensus 316 g~~l~d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r-~~~l~~~k~~fa~~~~---~~ 390 (581)
T PLN03129 316 GGDLADQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR-KDSLQPFKKPFAHDHE---PG 390 (581)
T ss_pred CCchhhceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC-CccChHHHHHHHhhcc---cC
Confidence 34445569999998 9999999988765 365 148999998721 110 01 1110 0000111 12
Q ss_pred CccccccCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206 88 DQLGQALED--SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 88 ~d~~eal~~--aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
.++.+++++ +|+.|=+.+.+ | -+.+++++.|.+++++.+|.-.|||.
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 478899999 89888765443 2 12468888999999999999999997
No 445
>PRK08223 hypothetical protein; Validated
Probab=96.18 E-value=0.011 Score=52.83 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||.|+|+ |-+|+.++..|+..|. .++.|+|-+
T Consensus 26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFD 60 (287)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 4569999998 9999999999999996 699999987
No 446
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.17 E-value=0.01 Score=53.60 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=59.6
Q ss_pred hhhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcE
Q 025206 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v 81 (256)
..+-.++|-|--+-+.+++. ....+++|||+ |..|...+..+..-..+.+|.++|++. +...+.++.+. ...++
T Consensus 95 ~~lT~~RTaA~salaa~~l~--~da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v 170 (301)
T PRK06407 95 NRLGQIRTGAVTAYATSILH--KNVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDI 170 (301)
T ss_pred chHHHHHHHHHHHHHHHHhh--cCCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcE
Confidence 34555566444443444553 25679999998 999887766665544468999999984 34444445432 12234
Q ss_pred EEEecCCccccccCCCCEEEEec
Q 025206 82 AGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 82 ~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.. ..+.++++++||+|+.+-
T Consensus 171 ~~---~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 171 RP---VDNAEAALRDADTITSIT 190 (301)
T ss_pred EE---eCCHHHHHhcCCEEEEec
Confidence 43 236788999999999763
No 447
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.17 E-value=0.037 Score=52.49 Aligned_cols=125 Identities=19% Similarity=0.332 Sum_probs=71.2
Q ss_pred eEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206 30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (256)
Q Consensus 30 KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~ 108 (256)
+|.++|. |..|.+ +|..|...|. +|...|.+... ...+|+... ++.+.+ .+ .+.++++|+||.+.|.|.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 4789998 989997 9999999998 99999976432 223344322 333333 23 345788999999988874
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhCCCCC
Q 025206 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAGTYNE 167 (256)
Q Consensus 109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~~~~~ 167 (256)
..- ........+++++.+. +.+.+...+..+|-+| |==.+++.+++.+++..| +++
T Consensus 71 ~~p-~~~~a~~~~i~v~~~~-el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~ 128 (448)
T TIGR01082 71 DNP-EIVEAKERGIPVIRRA-EMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDP 128 (448)
T ss_pred CCH-HHHHHHHcCCceEeHH-HHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCC
Confidence 221 1112223344444221 1122222122244444 543444557777887776 533
No 448
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.15 E-value=0.026 Score=51.42 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
....++|+|||. |.||..++..+. .-|. +|..+|.........++ . .+ + .++.+.++.||+|++.
T Consensus 142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~---~----~~-~---~~l~ell~~sDvv~lh 207 (323)
T PRK15409 142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF---N----AR-Y---CDLDTLLQESDFVCII 207 (323)
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc---C----cE-e---cCHHHHHHhCCEEEEe
Confidence 345679999998 999999999886 5566 88888865211111111 1 11 1 2567889999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
.... + + +-.++- .+.+....|++++||++-
T Consensus 208 ~plt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 208 LPLT--D-E--------THHLFG--AEQFAKMKSSAIFINAGR 237 (323)
T ss_pred CCCC--h-H--------HhhccC--HHHHhcCCCCeEEEECCC
Confidence 5321 1 1 111110 123334468999999973
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.14 E-value=0.024 Score=53.42 Aligned_cols=68 Identities=26% Similarity=0.355 Sum_probs=44.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Cccccc-cCCCCEEEEe
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQA-LEDSDVVIIP 103 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~ea-l~~aDvVIi~ 103 (256)
|||.|+|+ |.+|..++..|..+|+ +++++|.+... ...+.+.. .+....+. ..++++ +.++|.||++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 58999998 9999999999999888 99999987422 11122100 01111111 123344 7899999998
Q ss_pred c
Q 025206 104 A 104 (256)
Q Consensus 104 a 104 (256)
.
T Consensus 73 ~ 73 (453)
T PRK09496 73 T 73 (453)
T ss_pred c
Confidence 5
No 450
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.14 E-value=0.032 Score=52.72 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
...+|+|+|. |.+|..++..+...|. +|+++|+++.+.... ..+ . .+. .++.++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G----~~v----~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G----FRV----MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C----CEe----cCHHHHHhCCCEEEECCCC
Confidence 4468999998 9999999999998887 899999874322111 011 1 111 1345778999999987643
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
+ .++. .+.+....+.+++++++-+
T Consensus 278 ~---------------~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 278 K---------------DVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred H---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence 2 1121 1223333567899988743
No 451
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.13 E-value=0.021 Score=46.65 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+..+|.|+|| |.||...+..|+..|. +|++++..... ...++. .+........ ++.++++|+||.+-
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence 4569999999 9999999999999998 99999754222 222221 1221111222 35689999998873
No 452
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.13 E-value=0.011 Score=55.07 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
..++|+|||. |.||+.++..+..-|. +|..+|..+... .. . .. -.++++.++.||+|++...
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-~----~~----~~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-D----GD----FVSLERILEECDVISLHTP 176 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-C----cc----ccCHHHHHhhCCEEEEeCc
Confidence 4569999998 9999999999998888 999999753210 00 0 11 1246678899999999854
No 453
>PLN02306 hydroxypyruvate reductase
Probab=96.12 E-value=0.036 Score=51.80 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHH---HHHhc---ccCCCcEEEEecCCccccccCCC
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVA---ADVGH---INTRSEVAGYMGNDQLGQALEDS 97 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~---~dl~~---~~~~~~v~~~~~t~d~~eal~~a 97 (256)
....++|+|+|. |.||+.+|..+. .-|. +|..||........ ..... ......... ....++++.++.|
T Consensus 162 ~L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~s 237 (386)
T PLN02306 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREA 237 (386)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhC
Confidence 345679999998 999999999875 5566 99999976321110 01100 000000110 0123678899999
Q ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
|+|++..... + + +-.++. .+.++...|++++|+++
T Consensus 238 DiV~lh~Plt--~-~--------T~~lin--~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 238 DVISLHPVLD--K-T--------TYHLIN--KERLALMKKEAVLVNAS 272 (386)
T ss_pred CEEEEeCCCC--h-h--------hhhhcC--HHHHHhCCCCeEEEECC
Confidence 9999975321 1 1 111111 12333445789999997
No 454
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.11 E-value=0.016 Score=54.64 Aligned_cols=101 Identities=19% Similarity=0.309 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
...+|+|+|+ |.+|..++..|...|. .+|+++|.+.. ...+..+.. . ... ..++.+++.++|+||.+.
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----~--~i~-~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----E--AVK-FEDLEEYLAEADIVISST 248 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----e--Eee-HHHHHHHHhhCCEEEECC
Confidence 3469999998 9999999999988773 48999998732 222222211 1 111 125567889999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~ 150 (256)
+.+..- .+ .+.++...... ...+++-+++|-|+
T Consensus 249 ~s~~~i-i~------------~e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 249 GAPHPI-VS------------KEDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred CCCCce-Ec------------HHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 654211 11 11222221111 24588888999874
No 455
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.11 E-value=0.055 Score=46.07 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~ 64 (256)
+++.|+||+|.+|..++..|+.+|. +|++.|.+.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 4789999999999999999999998 999998864
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=96.09 E-value=0.024 Score=54.37 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=65.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEe-cCCccccc-------cCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDS 97 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~~ea-------l~~a 97 (256)
.+++.|+||+|.+|..++..|+.+|. +|++.|.+.. ......+.. .. ..+..-. ...++.+. +...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGD-EH-LSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ce-eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35789999999999999999999997 9999998731 111111111 00 0011000 00111122 2457
Q ss_pred CEEEEecCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 025206 98 DVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV 148 (256)
Q Consensus 98 DvVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPv 148 (256)
|++|++||... .+ ..+ ....+..|+.....+.+.+.++ ...+.||++|...
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~ 403 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA 403 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 99999998742 11 112 2234556655544444444333 2346777777543
No 457
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.09 E-value=0.041 Score=51.69 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...+|+|+|. |.+|..++..+...|. +|+.+|.++.+.... ..+ .+ .. .+++++++++|+||.+.|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G~----~v----~~leeal~~aDVVItaTG 259 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-GF----RV----MTMEEAAKIGDIFITATG 259 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-CC----Ee----CCHHHHHhcCCEEEECCC
Confidence 4569999998 9999999999998887 899999875321111 111 11 11 123567899999998754
No 458
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.09 E-value=0.0068 Score=54.98 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=52.9
Q ss_pred hhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82 (256)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~ 82 (256)
|-.++|-|--+-+-+++... +..+++|+|+ |..+...+..+.. .+ +.+|.++|++. ++..+.++.+ ....+.
T Consensus 107 lT~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~--~~~~v~ 181 (313)
T PF02423_consen 107 LTALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD--LGVPVV 181 (313)
T ss_dssp HHHHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC--CCTCEE
T ss_pred hhhhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc--ccccce
Confidence 33444544444444555443 4458999998 9998876665544 55 78999999984 4455566666 222344
Q ss_pred EEecCCccccccCCCCEEEEe
Q 025206 83 GYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 83 ~~~~t~d~~eal~~aDvVIi~ 103 (256)
. ..+.++++++||+|+.+
T Consensus 182 ~---~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 182 A---VDSAEEAVRGADIIVTA 199 (313)
T ss_dssp E---ESSHHHHHTTSSEEEE-
T ss_pred e---ccchhhhcccCCEEEEc
Confidence 3 24678999999998876
No 459
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.06 E-value=0.13 Score=44.76 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~ 62 (256)
+.+.|+||+|.+|..++..|+++|. +|++.+.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~ 33 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH 33 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence 3688999999999999999999998 8888754
No 460
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.05 E-value=0.019 Score=52.38 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
..++|+|+|+ |..|...+..+....-+.+|.++|++. ++..+.++.+. ....+.. ..++++++++||+||.+.
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEee
Confidence 4468999998 999988777776432256999999874 33333434321 1112222 246678899999998874
Q ss_pred C
Q 025206 105 G 105 (256)
Q Consensus 105 g 105 (256)
.
T Consensus 206 ~ 206 (330)
T PRK08291 206 P 206 (330)
T ss_pred C
Confidence 3
No 461
>PRK05599 hypothetical protein; Provisional
Probab=96.05 E-value=0.29 Score=42.19 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc----------cccccC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE 95 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~eal~ 95 (256)
|.+.|+||++.+|..++..|+ +|. .|++.+.+. ++....++...... .+..+.. -.| +.+...
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 358899999999999999998 475 899998763 33333444322110 1211110 011 112235
Q ss_pred CCCEEEEecCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVN 149 (256)
Q Consensus 96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tNPvd 149 (256)
..|++|+++|...... .+ ..+....|. ...+.+.+.+.+...++.|+++|.-..
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~ 140 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG 140 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 6899999998743211 11 112223332 333445566655444577777775443
No 462
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.04 E-value=0.22 Score=42.97 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred CceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.++|.|+||+| .+|..++..|+.+|. +|++.+.+
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~ 40 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS 40 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence 35799999974 699999999999997 89999865
No 463
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.03 E-value=0.014 Score=53.12 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
...+++|||+ |..|...+..+....-+.+|.++|.++ +...+.++.+. +...+..+ .++++++.++|+||.+-
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVT 200 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEcc
Confidence 3458999998 999987776655333357999999884 23333333321 12223322 35678899999999874
No 464
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.042 Score=52.27 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.||.|+|. |..|.+++..|...|. +|.+.|.++. .....++.... +..+.+. +..+.+.++|+||.+.|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~-~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKELG----VKLVLGE-NYLDKLDGFDVIFKTPS 86 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhCC----CEEEeCC-CChHHhccCCEEEECCC
Confidence 48999998 9999999999999998 9999998642 11112243322 3333322 22345789999999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG 163 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~ 163 (256)
.+...- ......+.+++++.++- .+.+..+ ..+|-+|-.. .+++.+++.+++..+
T Consensus 87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~~-~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYCP-AKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CCCCch-HHHHHHHcCCcEEechH-HhhhhcC-CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 764321 12222345566655442 2223322 2344555443 334456667777654
No 465
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.083 Score=50.44 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
+..+|.|+|+ |.+|..+|..|..+|. +|+++|.... ......+.... +..+.+.. . +...++|+||++
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~-~~~~~~D~Vv~s 85 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-P-TLPEDTDLVVTS 85 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-c-cccCCCCEEEEC
Confidence 3468999998 9999999999999998 9999996531 11112233222 33333321 1 234679999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG 163 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~ 163 (256)
.|.+..... .......+++++.+ ++-.+.+...+..+|-+|-.. .+++.+++.+++..|
T Consensus 86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 887642210 11112234444432 222222111133355565443 344556677777655
No 466
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.034 Score=48.10 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
|+|.|+||+|++|++++..|+.+++ +|+..-.+......+ . .........+.....+..++++.|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 5899999999999999999999987 888776653211112 2 111000111111234556789999999987643
No 467
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.98 E-value=0.026 Score=51.19 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=60.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...++|+|||. |.||+.+|..+..-|. +|..||..... .+.. +. ..++++.++.||+|++...
T Consensus 143 L~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~------~~~~----~~----~~~l~ell~~sDvv~lh~P 205 (311)
T PRK08410 143 IKGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN------KNEE----YE----RVSLEELLKTSDIISIHAP 205 (311)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc------cccC----ce----eecHHHHhhcCCEEEEeCC
Confidence 35579999998 9999999999876666 99999974211 0111 11 1256789999999999863
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN 149 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd 149 (256)
.. + +++ .++ | ++ .+....|++++||++= =+|
T Consensus 206 lt--~-~T~-~li--~----~~---~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 206 LN--E-KTK-NLI--A----YK---ELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred CC--c-hhh-ccc--C----HH---HHHhCCCCeEEEECCCccccC
Confidence 21 1 111 111 1 12 2333468899999973 355
No 468
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.98 E-value=0.017 Score=47.69 Aligned_cols=55 Identities=27% Similarity=0.522 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCC-cHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~-VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
+..||.|+|+ |. +|..++..|..+|. +|++++.+. .++.+.+++||+||.+.+
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence 4569999999 86 59989999998887 788887531 134567899999999977
Q ss_pred CC
Q 025206 106 VP 107 (256)
Q Consensus 106 ~~ 107 (256)
.|
T Consensus 97 ~~ 98 (168)
T cd01080 97 KP 98 (168)
T ss_pred CC
Confidence 65
No 469
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.97 E-value=0.097 Score=50.63 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=61.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcc--cCCC-c----EEEEe--cCCc------
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI--NTRS-E----VAGYM--GNDQ------ 89 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~--~~~~-~----v~~~~--~t~d------ 89 (256)
..+.||+|+|+ |-+|...+..+...|- +|+.+|.+.. ...+..+.-. ..+. . -..|. -+.+
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 35679999998 9999998888888886 8999999832 2222222110 0000 0 00000 0111
Q ss_pred --cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 90 --LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 90 --~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
+.+.++++|+||.|+|.|.++.. .-+.++..+.+ .|.+.|+.++-+
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~m---kpGgvIVdvg~~ 287 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASM---KPGSVIVDLAAE 287 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhc---CCCCEEEEEccC
Confidence 11224689999999998753211 01124444443 478888888764
No 470
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.97 E-value=0.02 Score=51.97 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=58.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|+|. |.+|+.++..+..-|. +|..+|..... +.. .. -.++++.++.||+|++..
T Consensus 144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~----~~~-------~~----~~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 144 DVRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS----VCR-------EG----YTPFEEVLKQADIVTLHC 205 (314)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc----ccc-------cc----cCCHHHHHHhCCEEEEcC
Confidence 345579999998 9999999999887776 89988853210 000 00 125678999999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 146 (256)
... +. + ..++ | ++ .+....|++++||++=
T Consensus 206 Plt--~~-T-~~li--~----~~---~l~~mk~ga~lIN~aR 234 (314)
T PRK06932 206 PLT--ET-T-QNLI--N----AE---TLALMKPTAFLINTGR 234 (314)
T ss_pred CCC--hH-H-hccc--C----HH---HHHhCCCCeEEEECCC
Confidence 321 10 1 1111 1 22 2333358899999973
No 471
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.07 Score=45.10 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=60.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc---CCCCEEEEe
Q 025206 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL---EDSDVVIIP 103 (256)
Q Consensus 33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal---~~aDvVIi~ 103 (256)
|+||+|.+|..++..|+++|. +|++.+.+. ......++.. . ..++.+..+ .++.+++ ...|++|+.
T Consensus 2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG-G--APVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 899999999999999999998 899999863 2222222321 1 122222111 1222223 347999999
Q ss_pred cCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 104 AGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 104 ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
+|...... .+ -.+.+..|+.....+.+ .....+.+.+++++
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s 123 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS 123 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence 98643211 11 23345566655555555 22233445666554
No 472
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.95 E-value=0.021 Score=55.33 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHc----CCCc-----cEEEEEeCCCc----h-----hHHHHHhcccCCCcEEEEe
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT----P-----GVAADVGHINTRSEVAGYM 85 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~----~~~~-----~eV~LiD~~~~----~-----g~~~dl~~~~~~~~v~~~~ 85 (256)
...+..||.+.|| |.-|..+|..|.. .|+- ..++++|.+-+ . .....+.+.... ... .
T Consensus 293 ~~l~d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~-~ 368 (559)
T PTZ00317 293 VPPEEQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDIS--AED-S 368 (559)
T ss_pred CChhhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccc--ccc-c
Confidence 3345569999998 9999999988763 5652 48999998721 1 111112221100 000 0
Q ss_pred cCCccccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206 86 GNDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (256)
Q Consensus 86 ~t~d~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 148 (256)
...++.|+++++ |+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.
T Consensus 369 ~~~~L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 369 SLKTLEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNVERPIIFPLSNPT 419 (559)
T ss_pred cCCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 023788999999 9888765543 2 12478899999999999999999997
No 473
>PRK07877 hypothetical protein; Provisional
Probab=95.95 E-value=0.025 Score=56.88 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----chhH---------------HHHHhcccCCCcEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYMG 86 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----~~g~---------------~~dl~~~~~~~~v~~~~~ 86 (256)
+..||+|+|+ | +|++++..|+..|.+++++|+|-+. ++-+ +..+.+.....++..+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3569999999 9 9999999999999778999999772 1101 111222222234444331
Q ss_pred ---CCccccccCCCCEEEEec
Q 025206 87 ---NDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 87 ---t~d~~eal~~aDvVIi~a 104 (256)
..++.+.++++|+||-+.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECC
Confidence 234556688999999984
No 474
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=95.94 E-value=0.059 Score=45.82 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=62.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCC
Q 025206 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALED 96 (256)
Q Consensus 31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~ 96 (256)
|.|+||+|.+|..++..|+++|. +|++++... ......++.+.. .++..+..+ ++ +.+ ....
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999998 888887542 122223333211 122222211 11 111 1235
Q ss_pred CCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 025206 97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV 148 (256)
Q Consensus 97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tNPv 148 (256)
.|.+|.++|...... .+ ....+..|+.....+.+.+ .+..+.+.++++|.+.
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 689999988643221 12 2334566655544444432 2223456677776543
No 475
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.94 E-value=0.017 Score=52.29 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=54.8
Q ss_pred hhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82 (256)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~ 82 (256)
+-.++|-|--+-+-+++... ...+|+|||+ |..|...+..+.. ++ +.+|.++|++. +...+.++.+.. ..+.
T Consensus 104 lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~~ 178 (314)
T PRK06141 104 LTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQG--FDAE 178 (314)
T ss_pred hhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcC--CceE
Confidence 33444444444333444433 3468999998 9999998775554 44 46999999873 333344443311 1233
Q ss_pred EEecCCccccccCCCCEEEEec
Q 025206 83 GYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 83 ~~~~t~d~~eal~~aDvVIi~a 104 (256)
. ..++++++++||+|+.+-
T Consensus 179 ~---~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 179 V---VTDLEAAVRQADIISCAT 197 (314)
T ss_pred E---eCCHHHHHhcCCEEEEee
Confidence 2 235667899999996653
No 476
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.046 Score=51.73 Aligned_cols=128 Identities=19% Similarity=0.308 Sum_probs=72.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
.++|.|+|+ |..|.+.+..|..+|. +|.+.|..+.......|.... ..+..+.+..+ .+.+.++|+||.+.|.|
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence 358999998 9999999999999998 999999864321112233211 12343333322 23357899999998887
Q ss_pred CCCCCCHHHHHHHHHHHH--HHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206 108 RKPGMTRDDLFNINAGIV--KDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 108 ~~~g~~r~d~~~~N~~i~--~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~ 163 (256)
...- ......+.+++++ .+++..+.+.. +..+|-+| |==.+++.+++.+++..|
T Consensus 79 ~~~p-~~~~a~~~~i~v~~~~~~~~~~~~~~-~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 79 ERQP-DIEAFKQNGGRVLGDIELLADIVNRR-GDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred CCCH-HHHHHHHcCCcEEEhHHHHHHhhhcC-CCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 4221 1111123444443 22332222211 12344454 433344557777787765
No 477
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.16 Score=48.88 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=50.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~ 107 (256)
..||.|+|. |..|.++|..|...|. +|...|.+.......+|..... .++...+..+ .+.+.++|+||...|.+
T Consensus 7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS 80 (498)
T ss_pred CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence 358999998 9999999999999998 9999998642211123443211 1222222222 34678999999998876
Q ss_pred C
Q 025206 108 R 108 (256)
Q Consensus 108 ~ 108 (256)
.
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 5
No 478
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.061 Score=50.95 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=71.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH---HHHHhcccCCCcEEEEecCC-cc---ccccCCCCEEEE
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGND-QL---GQALEDSDVVII 102 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~---~~dl~~~~~~~~v~~~~~t~-d~---~eal~~aDvVIi 102 (256)
||.|+|+ |..|.+.|..|...|+ +|.+.|.+..... ...|.... ++.+.+.. ++ .+.+.+.|.||.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999998 9999999999999998 9999998642111 11233322 22222221 11 124678999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG 163 (256)
Q Consensus 103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~ 163 (256)
+.|.|... .........+++++.++.-...... +..+|-+| |==.+++.+++.+++..|
T Consensus 75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 88876421 1111122345555554443322222 22344454 443455567778887776
No 479
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.91 E-value=0.078 Score=45.11 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE
Q 025206 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60 (256)
Q Consensus 29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li 60 (256)
..+.|+||+|++|+.++..|++.|. +|++.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~ 31 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY--TVAVN 31 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEE
Confidence 3689999999999999999999997 88764
No 480
>PRK06484 short chain dehydrogenase; Validated
Probab=95.90 E-value=0.031 Score=53.58 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
.+.+.|+||++.+|..++..|+.+|. +|+++|.+
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~ 38 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRN 38 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 34788999999999999999999998 99999886
No 481
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.85 E-value=0.032 Score=44.74 Aligned_cols=57 Identities=30% Similarity=0.466 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.+.++|.|+|.+..+|..++..|..+|. .+.+.|.+ +.++++++++||+||.+.|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence 3556999999999999999999998887 88877642 1144567899999999987
Q ss_pred CC
Q 025206 106 VP 107 (256)
Q Consensus 106 ~~ 107 (256)
.+
T Consensus 81 ~~ 82 (140)
T cd05212 81 KP 82 (140)
T ss_pred CC
Confidence 65
No 482
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.84 E-value=0.019 Score=52.82 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=56.4
Q ss_pred hhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEE
Q 025206 7 RSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84 (256)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~ 84 (256)
-..+|-|--+-+-+++... ...+++|||+ |..+...+..+..---+.+|.++|++. ....+.++.+.. ..+..
T Consensus 109 T~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~~- 183 (346)
T PRK07589 109 TALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIVA- 183 (346)
T ss_pred HHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEEE-
Confidence 3344444333333444433 4468999998 999887665544333468999999984 334444554421 12332
Q ss_pred ecCCccccccCCCCEEEEec
Q 025206 85 MGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 85 ~~t~d~~eal~~aDvVIi~a 104 (256)
..++++++++||+|+.+-
T Consensus 184 --~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 184 --CRSVAEAVEGADIITTVT 201 (346)
T ss_pred --eCCHHHHHhcCCEEEEec
Confidence 346789999999999864
No 483
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.79 E-value=0.026 Score=51.29 Aligned_cols=93 Identities=8% Similarity=0.054 Sum_probs=58.2
Q ss_pred hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~ 82 (256)
.|-.++|-|--+-+-+++... ....++|+|+ |..+...+..+..-..+.+|.++|++. +...+..+.+.. ..+.
T Consensus 106 ~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v~ 181 (315)
T PRK06823 106 WLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAVN 181 (315)
T ss_pred hHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcEE
Confidence 344455555444444455443 4568999998 999887776665544468999999984 232333333221 2233
Q ss_pred EEecCCccccccCCCCEEEEec
Q 025206 83 GYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 83 ~~~~t~d~~eal~~aDvVIi~a 104 (256)
. ..+.++++++||+|+.+-
T Consensus 182 ~---~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 182 T---TLDAAEVAHAANLIVTTT 200 (315)
T ss_pred E---ECCHHHHhcCCCEEEEec
Confidence 2 235678999999999864
No 484
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.79 E-value=0.013 Score=53.76 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=43.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 30 KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
||+|+||+|++|..++..|..+++ ..++.++-..+..+....+.. ..+... ..+ .++++++|+||++.|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCCH
Confidence 689999999999999999988655 336666644422222222211 112211 112 2456899999998763
No 485
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.76 E-value=0.074 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||+|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus 20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDR 54 (197)
T ss_pred HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 4569999998 8899999999999996 689999976
No 486
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.75 E-value=0.14 Score=42.06 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=41.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
.++|+|||. |.-|...|..|...|+ +|+.-..........-..+ . ++ ..++.|+.+.||+|+++.
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~-G----f~----v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKAD-G----FE----VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHT-T-----E----CCEHHHHHHC-SEEEE-S
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHC-C----Ce----eccHHHHHhhCCEEEEeC
Confidence 469999998 9999999999999999 8877766532221111122 1 11 235678999999999984
No 487
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=95.75 E-value=0.096 Score=48.17 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=36.3
Q ss_pred cHHHHHHHHHcCCCccEEEEEeCCCch--h-HHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 40 IGQPLALLMKLNPLVSRLALYDIANTP--G-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 40 VG~~la~~l~~~~~~~eV~LiD~~~~~--g-~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
=|..+|..|+..|+ +|+++|.++.. . ....+... .++. .++..+++++||+||++.
T Consensus 31 gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~---asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 31 GGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV---VSDDAEAAKHGEIHILFT 89 (342)
T ss_pred CHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE---eCCHHHHHhCCCEEEEEC
Confidence 46788888998998 99999987421 1 11122221 1232 224467789999999994
No 488
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.73 E-value=0.033 Score=50.60 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=47.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCC-CchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
.++|+| ||+|.||..+...|.++++ ++++.|++.. +..|....+.. ..+.+.. . + ++++++.|++++ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~-l-~-~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIA-P-E-EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEE-C-C-ccCcccCCEEEE-cC
Confidence 468999 9999999999999999886 7889999876 43342222221 1232221 1 1 247899999999 65
No 489
>PLN02494 adenosylhomocysteinase
Probab=95.71 E-value=0.047 Score=52.13 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
...+|+|+|. |.+|..++..+...|. +|+.+|++..+ ..+. .+ .+. + .++.++++.+|+||.+.|
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~-G~~--v------v~leEal~~ADVVI~tTG 318 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--ME-GYQ--V------LTLEDVVSEADIFVTTTG 318 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hc-CCe--e------ccHHHHHhhCCEEEECCC
Confidence 3468999998 9999999999987887 89999987432 1211 11 111 1 134568899999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 147 (256)
.. .++ ..+.+....+.+++++++-+
T Consensus 319 t~---------------~vI--~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 319 NK---------------DII--MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred Cc---------------cch--HHHHHhcCCCCCEEEEcCCC
Confidence 32 111 02333444578999999874
No 490
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.70 E-value=0.033 Score=50.61 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=58.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
....++|+|+|. |.||+.+|..+..-|. +|..+|..... + . .. ..++.+.++.||+|+++.
T Consensus 145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~~-------~-~----~~----~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 145 ELEGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGRP-------A-R----PD----RLPLDELLPQVDALTLHC 205 (317)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCCc-------c-c----cc----ccCHHHHHHhCCEEEECC
Confidence 345579999998 9999999999986676 99999864210 0 0 11 125678899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t 145 (256)
... +. ++ .++ | ++. +....|++++||++
T Consensus 206 Plt--~~-T~-~li--~----~~~---~~~mk~ga~lIN~a 233 (317)
T PRK06487 206 PLT--EH-TR-HLI--G----ARE---LALMKPGALLINTA 233 (317)
T ss_pred CCC--hH-Hh-cCc--C----HHH---HhcCCCCeEEEECC
Confidence 321 11 11 111 1 222 23335889999997
No 491
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.70 E-value=0.13 Score=44.53 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (256)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV 100 (256)
|+....+.++|.|||| |.|+..=+..|+..|- +|+++...- .....++... ..++.....++ ++.++++++|
T Consensus 18 pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA--~VtVVap~i-~~el~~l~~~---~~i~~~~r~~~-~~dl~g~~LV 89 (223)
T PRK05562 18 FISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGC--YVYILSKKF-SKEFLDLKKY---GNLKLIKGNYD-KEFIKDKHLI 89 (223)
T ss_pred eeEEECCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCC-CHHHHHHHhC---CCEEEEeCCCC-hHHhCCCcEE
Confidence 3334445679999999 9999988888888775 899996542 1222233321 13444333333 3578999999
Q ss_pred EEec
Q 025206 101 IIPA 104 (256)
Q Consensus 101 Ii~a 104 (256)
|.+.
T Consensus 90 iaAT 93 (223)
T PRK05562 90 VIAT 93 (223)
T ss_pred EECC
Confidence 8874
No 492
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.70 E-value=0.22 Score=45.72 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCC-CCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~-aDvVIi~ag 105 (256)
..+|+|+|+ |-+|......+...|. +|+.+|+++. ...+.+|- ...-+.. . +.+..+++++ +|+|+.+++
T Consensus 167 G~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC
Confidence 469999998 8777766666665775 9999999842 22334342 1111111 1 1222334433 999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-CCchHHHHHHHHHhCCCCCCcEEEE---eechHHHH
Q 025206 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVVRA 181 (256)
Q Consensus 106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-d~~~~i~~~~~~~~~~~~~~kviG~---t~lds~R~ 181 (256)
+. -+....+ -..+++.++.+.+|- .....+- ..... +...+|.|+ +.-|+..+
T Consensus 239 -~~---------------~~~~~l~---~l~~~G~~v~vG~~~~~~~~~~~--~~~li--~~~~~i~GS~~g~~~d~~e~ 295 (339)
T COG1064 239 -PA---------------TLEPSLK---ALRRGGTLVLVGLPGGGPIPLLP--AFLLI--LKEISIVGSLVGTRADLEEA 295 (339)
T ss_pred -hh---------------hHHHHHH---HHhcCCEEEEECCCCCcccCCCC--HHHhh--hcCeEEEEEecCCHHHHHHH
Confidence 31 0222333 334788999999994 3321110 11111 446689998 33444333
Q ss_pred HH
Q 025206 182 KT 183 (256)
Q Consensus 182 ~~ 183 (256)
..
T Consensus 296 l~ 297 (339)
T COG1064 296 LD 297 (339)
T ss_pred HH
Confidence 33
No 493
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.69 E-value=0.035 Score=48.10 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+.+.+.|+||+ +.+|..++..|+..|. +|++.+.+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~ 42 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQN 42 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCc
Confidence 34578999997 5899999999999998 89998876
No 494
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.68 E-value=0.12 Score=55.60 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=66.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCC--CccEEEEEeCCCchh-HHHHHhcc---------cCCCcEEEEecC-------
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPG-VAADVGHI---------NTRSEVAGYMGN------- 87 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~--~~~eV~LiD~~~~~g-~~~dl~~~---------~~~~~v~~~~~t------- 87 (256)
++++|.|+||+|++|++++..|+..+ ...+|+......... ....+.+. ....++..+.++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35789999999999999999988776 223666655542111 11111110 001123333221
Q ss_pred ---CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 025206 88 ---DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141 (256)
Q Consensus 88 ---~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~i 141 (256)
..+.+...++|+||++|+... ......++...|+....++++.+.+.....++
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v 1105 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFS 1105 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEE
Confidence 112334578999999987542 22233444456899999999988766544333
No 495
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.028 Score=50.27 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~ 106 (256)
...+|+|||.+|.||.+++..|...|. .|.++... +.++++.+++||+||.+.|.
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGR 211 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCc
Confidence 456999999999999999999999987 88776211 12455678999999999886
Q ss_pred C
Q 025206 107 P 107 (256)
Q Consensus 107 ~ 107 (256)
|
T Consensus 212 ~ 212 (284)
T PRK14179 212 G 212 (284)
T ss_pred c
Confidence 6
No 496
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.093 Score=49.52 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=69.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEec
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA 104 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~a 104 (256)
.++|.|+|+ |.+|.+.+..|+..|. +|.+.|.+.. ......+.... ++.+.+. +..+.+. ++|+||...
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~g----~~~~~~~-~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEEG----IKVICGS-HPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhcC----CEEEeCC-CCHHHhcCcCCEEEECC
Confidence 358999999 7799999999999998 9999997631 12222343322 2222222 1122334 499999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG 163 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~ 163 (256)
|.+... .........+++++.+.- ......+ ..+|-+|-.. .+++.+++.+++..|
T Consensus 77 gi~~~~-~~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 77 GIPYTN-PMVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CCCCCC-HHHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 877432 111122233444443221 1112222 2244455443 455557777787765
No 497
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.64 E-value=0.034 Score=52.51 Aligned_cols=102 Identities=23% Similarity=0.388 Sum_probs=62.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a 104 (256)
+..+|+|+|+ |.+|..++..|...|. .+|+++|.+... ..+.++. ..... ..++.+.+.++|+||.+.
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST 250 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence 4469999998 9999999998887774 479999987322 2222221 11111 124566789999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEecCCCCC
Q 025206 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIA-KYCPNAIVNMISNPVNS 150 (256)
Q Consensus 105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~~p~~~iiv~tNPvd~ 150 (256)
|.+..- .. .+.++.. +. +...+.+++=+++|-|+
T Consensus 251 ~s~~~~-i~--------~~~l~~~---~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 251 GAPHPI-IG--------KGMVERA---LKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred CCCCcE-Ec--------HHHHHHH---HhhccCCCeEEEEeCCCCCC
Confidence 654211 11 1111111 11 11345788889999884
No 498
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.63 E-value=0.038 Score=51.38 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (256)
Q Consensus 27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~ 63 (256)
+..||.|+|+ |.+|+.++..|+..|. .+|+++|.+
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDD 74 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 4569999998 9999999999999885 699999987
No 499
>PLN02858 fructose-bisphosphate aldolase
Probab=95.63 E-value=0.063 Score=57.79 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (256)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ 103 (256)
.++..++|++||. |.+|.+++..|+..|+ +|..+|++ .....++....... ..++.+++++||+||++
T Consensus 320 ~~~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~--~~~~~~l~~~Ga~~-------~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 320 QAKPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVY--KPTLVRFENAGGLA-------GNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred cccCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCC--HHHHHHHHHcCCee-------cCCHHHHHhcCCEEEEe
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 025206 104 AGVPRKPGMTRDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN 146 (256)
Q Consensus 104 ag~~~~~g~~r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tN 146 (256)
...+ ..+++++ ..+....+..++|..|.
T Consensus 388 V~~~---------------~~v~~Vl~g~~g~~~~l~~g~ivVd~ST 419 (1378)
T PLN02858 388 VANE---------------VQAENVLFGDLGAVSALPAGASIVLSST 419 (1378)
T ss_pred cCCh---------------HHHHHHHhchhhHHhcCCCCCEEEECCC
No 500
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.62 E-value=0.12 Score=45.67 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=39.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCccEEEE-EeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (256)
Q Consensus 28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~L-iD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag 105 (256)
|+||+|||+ |.+|..++..+...+.. ++.. ++.........+.... .+.. .+++++.-.+.|+||++++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~----~~~~---~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE----AVRV---VSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc----CCee---eCCHHHhccCCCEEEECCC
Confidence 479999998 99999999888765432 4433 3433221111111111 1222 2244333357999999975
Done!