RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025206
(256 letters)
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 387 bits (996), Expect = e-137
Identities = 149/227 (65%), Positives = 180/227 (79%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
L L+ DVV+IPAGVPRKPGMTRDDLFN NA IV L +A A++CP+A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
ST+PI AEVFKK G YN K+FGVTTLD+VRA F A ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
+PL SQ TPK + + + LT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 386 bits (995), Expect = e-136
Identities = 158/235 (67%), Positives = 184/235 (78%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
+ P KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2 AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G++G QL AL D++I+PAGVPRKPGMTRDDLF INAGIVK LC IAK CP AIV
Sbjct: 62 RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A ++ +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181
Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
GGHAG+TILPL SQ P ++ E+I LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMA 236
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 364 bits (936), Expect = e-128
Identities = 138/229 (60%), Positives = 168/229 (73%), Gaps = 4/229 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
+ ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
TILPL SQ P + ++++ LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG 228
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 161 bits (410), Expect = 3e-48
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 23/237 (9%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
K+ ++GAAG IG +A + L L LYD GVA ++ H E
Sbjct: 9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
+ +AL D+ ++ G PRK GMTR+DL NA I L I YCP+ V +I
Sbjct: 67 TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
NP + T + +G ++ + LD R ++ A + + V N GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182
Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
G + S A L +E L +R GG +++ + S+
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSS 236
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 145 bits (369), Expect = 2e-42
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 24/234 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
KV V+GA G +G +A + + + + DI + G A D+ + V G
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND EDSDV II AG+PR PGM+RDDL N IV + + P++ + +
Sbjct: 61 --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NP++ + V +A + ++ G+ LD R ++F A + +V+V +V ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSA 251
GH G T++PL T P L D I+ + +RT+ G E+V+ SA
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSA 223
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 145 bits (368), Expect = 2e-42
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
KV+V+GAAG +G + L + + DI + AAD H Y
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55
Query: 86 GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
N ++ Q SDVV+I AG+PR+PG TR DL NA I++D+ S++ ++ + I
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
SNPV+ + +AG + +++ G LD R + + + + V V +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171
Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
+G H G +P+FS+ + + ++ + L Q+ +V+E KG+
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGAT 221
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 144 bits (367), Expect = 3e-42
Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 23/234 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ V+GA G +G A + L L L D+ G A D+ ++V G
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND +SD+VII AG+PRKPGMTR+DL NAGIVK++ I K+ N I+ +
Sbjct: 61 --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
+SNP++ I V ++++ G+ LD R ++F A + V++ ++N V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172
Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GH G ++P+ T P ++L E I L +RT++GG E+VE +GSA
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSA 224
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 144 bits (367), Expect = 4e-42
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 28/247 (11%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
KV ++GA+G +G ALL+ P + L L + G+ D+ + + +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
+ + +++SDVVII +GVPRK GM+R DL NA IV IA+ C I
Sbjct: 62 YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
+I+NPV+ + + ++FG+ T LD +R K A V++ EV +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174
Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKA----GKG 249
+G H G +++PL S + + I + + + G +++ K G
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPA 233
Query: 250 SATLSMA 256
+A L++
Sbjct: 234 AAILNVV 240
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 144 bits (367), Expect = 6e-42
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 29/246 (11%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
+ + +K++++GA G IG +ALL+ L + ++DI G A D+ H I
Sbjct: 9 NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ +++ G N+ + L++SDVVII AGVPRKP MTR DL +NA IV + + KYC
Sbjct: 67 SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
PNA V I+NP++ FK+ K+ G+ LD R + + V ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178
Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
V+ VVGGH G ++PL S T + + I + K+T GG E+VE
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237
Query: 246 AGKGSA 251
GSA
Sbjct: 238 -KTGSA 242
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 144 bits (366), Expect = 6e-42
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
RK+AV+G+ G IG +A ++ + L + + L+DIA G A D+ H + S+V
Sbjct: 5 RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G +D + SDVVII A +P +P R +L NA I+ + + KYCPNA V
Sbjct: 63 G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ + F+K K+ G+ LD R +TF A VN ++V+ V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G ++P S + + + E I + T+ EV + G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 144 bits (366), Expect = 7e-42
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 26/244 (10%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
++ ++ +KV+V+GA G G A L+ L + + L DI D+
Sbjct: 2 NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59
Query: 75 -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+ + G +D DSDVV+I AG+ RKPGM+RDDL N+ I+K + IA
Sbjct: 60 VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ PNAI+ +++NPV+ K + ++++ G LD R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
V ++ V+GGH G ++PL + P L E ++A+ +RT+ GG E+V G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229
Query: 248 KGSA 251
GSA
Sbjct: 230 NGSA 233
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 144 bits (365), Expect = 8e-42
Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 29/240 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K+ ++GA G IG LA L + L + L+DIA G A D+ +V
Sbjct: 6 KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND + LE+SDVVI+ AGVPRKPGM+RDDL IN +++ + I CPNA V
Sbjct: 64 G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ I + +K + K+ G+ LD R +TF A + NV+V +V V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G T++PL + + L E + A+ RT+ GG E+V GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 143 bits (364), Expect = 9e-42
Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 24/235 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K++++GA G +G A + L + L DI G A D+ V
Sbjct: 3 KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G N+ +SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++
Sbjct: 61 G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
M++NP++ + + + ++++ G LD R +TF A +A V+V +V ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172
Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G ++PL + P + A + + + +RT+ GG E+V GSA
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSA 225
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 142 bits (361), Expect = 5e-41
Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 29/240 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+A++G+ G IG LA L L L + L+DIA G D+ ++
Sbjct: 8 NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND A+E +DVVI+ AGVPRKPGM+RDDL IN +++ + + I KY P A V
Sbjct: 66 G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ +K K+ G+ LD R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G +++PL +T + + + + +RT+DGG E+V GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 139 bits (352), Expect = 6e-40
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M + + D+ T G A D+ +
Sbjct: 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG +R DL N N I+ + + + I
Sbjct: 59 PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ +NPV+ I K + ++++ G T+LD R + + NV+ V+ ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
G H G + +S AT + ++D+D+ L ++ +++ KG+
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGAT 230
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 137 bits (348), Expect = 2e-39
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
+ +LGA G +G A+++ + L L G A D+ H + ++G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
N + + SD+V++ AG+ RKPGMTR+ L NA + DL I Y +AIV +
Sbjct: 59 -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115
Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
+NPV+ V K + +++ G LD R + + K V+ VN V+G
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171
Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSA 251
H G + P+ ++ P +L E+I+ + T + G ++ E + S+
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR--GYSS 221
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 138 bits (349), Expect = 3e-39
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 27/242 (11%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
+KVA++G+ G IG + L L L + LYD+ G A D+ H +
Sbjct: 10 KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 68 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +++NP++ +V +A + G+ LD R + + A +V+ +V
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183
Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
V+G H G ++PL T + ++ ++ + + T+ G E+V G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241
Query: 250 SA 251
SA
Sbjct: 242 SA 243
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 137 bits (347), Expect = 5e-39
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 35/242 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KV ++G G +G A + +V L + D+ G D+ H R +
Sbjct: 7 NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I K + + + I
Sbjct: 66 AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I A K ++++ G T LD R + + +V V+
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174
Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
++G H G T LP++S A + I+ + +T+D ++++ KG
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKG 230
Query: 250 SA 251
+
Sbjct: 231 AT 232
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 135 bits (342), Expect = 3e-38
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 33/241 (13%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M L + + + DI T G A D+ + +
Sbjct: 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG TR DL N N I+K + I N I
Sbjct: 63 PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ +NPV+ I K + + ++ G T+LD R + A NV+ V+ ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178
Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
G H G T P++S A + ++ + + + +D E+++ KG+
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGA 234
Query: 251 A 251
Sbjct: 235 T 235
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 134 bits (341), Expect = 3e-38
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 36/245 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+ ++G+ G IG +A L+ L + L+DI G A D H + +V+
Sbjct: 5 AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
G N L +DVVI+ AG + PG + RDDL +N I+ ++ I K CP
Sbjct: 63 G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
NA + +++NPV+ + ++ + + K+ G+ LD R K + + K NV +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
N +VG H G ++ L T ++D +++A+ RT + E+V
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL-- 231
Query: 247 GKGSA 251
S
Sbjct: 232 -HASP 235
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 134 bits (341), Expect = 3e-38
Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 36/243 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
+V V+GA G +G + + + L D G A D H
Sbjct: 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I + + ++ +
Sbjct: 66 HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I K +++ G T LD R + +V V+
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174
Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
++G H G T LP++SQA K A +D++ + +D +++E K
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KK 230
Query: 249 GSA 251
G+
Sbjct: 231 GAT 233
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 134 bits (340), Expect = 5e-38
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 36/243 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KVA++GA G +G A + + L + D+ G D+ H ++
Sbjct: 6 NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y + +D+D+V I AG +KPG TR +L N I K + S + + I
Sbjct: 65 YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I K ++++ G TTLD R + + V
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173
Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
++G H G T LP++S A E++ + ++ ++E K
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE---KK 229
Query: 249 GSA 251
G+
Sbjct: 230 GAT 232
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 134 bits (340), Expect = 5e-38
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
+ +V K+AV+GA G +G LA + + L DIA D+ H
Sbjct: 1 AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
T S + D+D+V+I AG +KPG +R +L I+K + +
Sbjct: 60 PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K PNAI +I+NPV+ IA V +K E ++FG T LD R + A + VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
V V+ + G H G + +PL+ AT L + + + + ++
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227
Query: 240 EVVEAKAGKGSA 251
+++ GKG+
Sbjct: 228 KIIN---GKGAT 236
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 134 bits (339), Expect = 7e-38
Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
KVA++GA G +G A M L + L L D+ G A D+ H
Sbjct: 4 VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56
Query: 83 GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+MG L ++D DV+++ AG RKPG TR DL N I K++ I KY +
Sbjct: 57 PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
++ ++SNPV+ I + +K K+ G T LD +R + + K V+V V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172
Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
++G H G + LPL+S PK N +ED K + + + G +++
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229
Query: 246 AGKGSA 251
KG+
Sbjct: 230 -NKGAT 234
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 132 bits (335), Expect = 2e-37
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 34/241 (14%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
KV ++G+ G +G A + L + + L D+ A D+ H +
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ LE + V++ AGV ++PG TR L + NA + + + + P A++ +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
+NPV+ + +V ++ G T LD R + A V V+ V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170
Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
H G + + ++S A L+ ED + + + ++E GKG+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGA 226
Query: 251 A 251
Sbjct: 227 T 227
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 133 bits (336), Expect = 2e-37
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 33/240 (13%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
K+ ++G G +G A + + + L D+ G A D+ H +
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ L+ SDVVI+ AGVP+KPG TR L NA ++K++ ++KY P++IV +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NPV+ + F K + +K+FG T LD R +T A + V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170
Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
H G + +P++S A + ++ ++T+ E++E KG+
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGAT 226
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 131 bits (331), Expect = 5e-37
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ +GA G +G A LN V +AL DIA G A D+ H I+ ++ G
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
G D L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+ I + P + + +
Sbjct: 61 --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NP++ + + K ++FG+ LD R K N+ ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170
Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
H G ++ S A + D +A+ + EV++ KG+
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKR---KGAT 212
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 131 bits (332), Expect = 9e-37
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H + T
Sbjct: 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73
Query: 78 RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
V+ Y +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 74 PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
P + ++SNPV+ I V K + + ++ G LD R + + V+
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182
Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
+ V+G H G + +P++S + E K + K+ D EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241
Query: 243 EAK 245
+ K
Sbjct: 242 KLK 244
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 130 bits (328), Expect = 3e-36
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 36/248 (14%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
+V V GAAG I L + K P++ L L DI GV D
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62
Query: 76 NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
+ +A D+ A +D DV I+ +PR+ GM R DL N I K +A+ KY
Sbjct: 63 LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118
Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
++ V ++ NP N+ A+ K A + ++ +T LD RAK A K V
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175
Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
+V ++ G+ T P + A K E + Q G V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235
Query: 244 AKAGKGSA 251
A+ SA
Sbjct: 236 AR-KLSSA 242
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 128 bits (325), Expect = 7e-36
Identities = 64/246 (26%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
+VAV GAAG I L +L K P++ L L +I N GV D
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 74 HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
A A +D+DV ++ PR PGM R DL NA I AI
Sbjct: 65 FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
N V ++ NP N+ IA K A + K + LD RA + A K
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
V+ + V G+ T+ + A ++ ++D G +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237
Query: 246 AGKGSA 251
G SA
Sbjct: 238 -GVSSA 242
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 124 bits (314), Expect = 2e-34
Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 24/228 (10%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
+ E+ K+ V+G G +G L + + RL L D++ T G D+ N +
Sbjct: 8 NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66
Query: 81 VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
A S VVI + D+ N + + L A+ Y +
Sbjct: 67 EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
+++ + S P V I V K T+ ++ G+ LD R + +
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174
Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
V V+G G + +S + + E++ K
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK 215
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 124 bits (314), Expect = 3e-34
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 27/244 (11%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
S E K+ V+G +G A+ + + L +AL D+ G D+ H +
Sbjct: 15 SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+T V+G Y S +V+I AG ++ G +R +L N I K + I
Sbjct: 74 HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ P+ + + + K ++ G LD R + + V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
V V+G H G ++ ++S K + + ++ L T VV
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241
Query: 248 KGSA 251
+
Sbjct: 242 VLTY 245
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 123 bits (311), Expect = 8e-34
Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 33/244 (13%)
Query: 30 KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
+VAV GAAG IG L ++ + V L L +I + A D
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
A D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
+ V ++ NP N+ IA K A N + +T LD RAK A K V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175
Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
+ V G+ T+ P A P L D + K G +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234
Query: 248 KGSA 251
SA
Sbjct: 235 ASSA 238
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 121 bits (306), Expect = 3e-33
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 38/242 (15%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
KV V+G G +G A + L S L L D A D+ H TR
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G+ L D+ VVI+ AG +KPG +R DL NA I ++L I + P+A++
Sbjct: 61 GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ SNPV+ + ++ + + G T LD R + A A V+ + V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167
Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
G H G + + +S A ++ + + T++ ++E GK
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223
Query: 250 SA 251
+
Sbjct: 224 AT 225
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 120 bits (302), Expect = 4e-32
Identities = 65/243 (26%), Positives = 89/243 (36%), Gaps = 30/243 (12%)
Query: 30 KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
+AV GAAG I L + ++ L L + GVA D +
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
R G + ED D ++ PR PGM R L +IN I D A+
Sbjct: 93 LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148
Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
N V ++ NP N+ I K A K +T LD RAK A KA V +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205
Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
V+ + G+ T +P F A E IK T Q G +++ G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264
Query: 249 GSA 251
SA
Sbjct: 265 SSA 267
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 117 bits (295), Expect = 2e-31
Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 36/243 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
RK+ ++G G +G +A + + D D +
Sbjct: 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ + AL D+DVVI G + P R + +V+ + + + +
Sbjct: 61 INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
+ ++ +ISNPV+ + +F+ + K+ G T LD R + +++
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169
Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
V+ +G H G + +S P LAD D+ A+ + + GG V+ GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225
Query: 249 GSA 251
G
Sbjct: 226 GYT 228
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 55.1 bits (132), Expect = 6e-09
Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)
Query: 25 SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
S+ K+A +G G G +L L + +ALYD+ A I S
Sbjct: 2 SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58
Query: 82 AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
Y L +AL +D+VII P + G+ + + G
Sbjct: 59 GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118
Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
I ++ AI Y P + V +NP++ + +VF T
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178
Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
+ T G ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-07
Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 55/227 (24%)
Query: 57 LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV-------IIPAGVPRK 109
+ LY T A DV + + D G ++ D+V I G +
Sbjct: 1633 MDLYK---TSKAAQDV-----WNRADNHFK-DTYGFSI--LDIVINNPVNLTIHFGGEKG 1681
Query: 110 -------PGMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN--PVNSTVPI 154
M + D I K++ Y +++ P + +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 155 AA-EVFKKAGTYNEKKLF---------------GVTTL-DVVRAKTFYAGKANVNVAEVN 197
AA E K G F V ++ +V FY G +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-VFYRGMTMQVAVPRD 1800
Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
+ I I P A+ + E ++ + +R +VE
Sbjct: 1801 ELGRSNYGMIAINP----GRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 37.3 bits (86), Expect = 0.004
Identities = 54/299 (18%), Positives = 79/299 (26%), Gaps = 146/299 (48%)
Query: 17 GARG---YSSESVPDRKVAVLGAAGGIGQP---LAL-----------LMKLN---PLVSR 56
G R Y + S+P + G P L++ + K N P +
Sbjct: 307 GVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 57 L--ALYDIANTP------GVAADVGHINT--RSEVAGYMGNDQ----------------- 89
+ +L N G + +N R A G DQ
Sbjct: 366 VEISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIPFSERKLKFSNRFL 421
Query: 90 ----------LGQALE--DSDV----VIIPA---GVPRKPGMTRD--DLFNINAGIVKDL 128
L A + + D+ V A +P T D DL ++ I + +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERI 479
Query: 129 CSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
I I PV +T A T+ LD F
Sbjct: 480 VDCI-----------IRLPVKWETTTQFKA-------TH---------ILD------F-- 504
Query: 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDG-GTEVVEA 244
G P GG +G+ LT R +DG G V+ A
Sbjct: 505 G-----------P--GGASGLG--------------------VLTHRNKDGTGVRVIVA 530
Score = 31.9 bits (72), Expect = 0.23
Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 86/195 (44%)
Query: 116 DLFNINAGIVKDLCSAIA--------------KYCPNA--IVNMISNPVN-------STV 152
DL+ +V DL A K I+ + NP N ++
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 153 PIAA-----------EVFKKAGTYNEKKLF----GVTTL--DVVRA---------KTFYA 186
PI+ V K + +L G T +V A ++F+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 187 GKANVNVAEVNVPVVGGHAGITILPLFS------QATPKANLADEDIKALTKRTQDGGTE 240
+V + IT+ LF +A P +L + +D
Sbjct: 295 -----SVRKA----------ITV--LFFIGVRCYEAYPNTSLPPSIL-------ED---- 326
Query: 241 VVEAKAGKGSATLSM 255
+ +G + M
Sbjct: 327 --SLENNEGVPS-PM 338
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 49.4 bits (117), Expect = 4e-07
Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
+ + G G P L LL L + +L LYD A I ++
Sbjct: 30 SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ +A D D V+ V + D+ + G+
Sbjct: 89 EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148
Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
V ++ + KY P+A + SNP
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 48.2 bits (114), Expect = 9e-07
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)
Query: 30 KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
K+A +G L+ + + L V L L DI VG + R E AG
Sbjct: 9 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68
Query: 84 --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
+AL+ +D V V P K G+ +
Sbjct: 69 IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
++ D+ + + CP+A + +NP
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 47.2 bits (111), Expect = 2e-06
Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
K+ ++GA G ++ L K L S + L DI +
Sbjct: 5 KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63
Query: 84 -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ L + D+D VI A V + + G
Sbjct: 64 KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123
Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
D+ I K P A +NP+ + + K G
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174
Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
K + +V+ V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 37.2 bits (87), Expect = 0.003
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
K+A+ GA+G +G+ L + P + + D +P + D G + G D
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ--TGVALTDD 66
Query: 90 LGQALEDSDVVI 101
+ + ++D +I
Sbjct: 67 IERVCAEADYLI 78
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 36.4 bits (85), Expect = 0.006
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
+VA+ GA G +G+ L V A + + + +D G + + G
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSS 65
Query: 90 LGQALEDSDVVI 101
L +D DV I
Sbjct: 66 LDAVKDDFDVFI 77
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 36.5 bits (85), Expect = 0.006
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
++ V+GA G +G+ L ++ V A+ + V D + + G D
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFL-GVRITDD 81
Query: 90 LGQALEDSDVVI 101
A +++ ++
Sbjct: 82 PESAFSNTEGIL 93
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.009
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 125 VKDLCSAIAKYCPNAIVNMISNP---VNSTV 152
+K L +++ Y + S P + +T+
Sbjct: 22 LKKLQASLKLYADD------SAPALAIKATM 46
Score = 33.0 bits (74), Expect = 0.040
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 47 LMKLNPLVSRLALY--DIANTPGVAADVGHINTRSE 80
L KL + L LY D A P +A I E
Sbjct: 22 LKKLQ---ASLKLYADDSA--PALA-----IKATME 47
Score = 27.6 bits (60), Expect = 2.8
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 7 RSVKTLA---KPAGARGYSSESVPDRKVAV 33
+++K L K Y+ +S P +A+
Sbjct: 20 QALKKLQASLKL-----YADDSAP--ALAI 42
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 35.9 bits (82), Expect = 0.010
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 30 KVA-VLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
VA ++G G IG LA +L + +Y +A A
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-PAWHEDNPINYVQCDISDP 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
D L V V T + N+ + +++ A+ CPN
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN 111
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 34.0 bits (78), Expect = 0.027
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
V +LGA G I + + + + + A P N++ + + +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF---ARQPAKIHKPYPTNSQIIMGDVLNHAA 81
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTR 114
L QA++ D+V
Sbjct: 82 LKQAMQGQDIVYANLTGEDLDIQAN 106
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 32.7 bits (75), Expect = 0.068
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY---DIANTPGVAADVGHINTRSEVAGYM 85
++V + GA G G+ L + P ++++ +A P + VG +
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPL---------- 55
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ L Q D G K + + ++ DL A+ K
Sbjct: 56 -AELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDF----DLPLAVGKRA 101
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 33.0 bits (75), Expect = 0.077
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNP---LVSRLALYDIANTPGVAADVGHINTRSEVAG 83
K+ + G G IG+ + A L +P L ++ + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 84 YMGNDQLGQALEDSDVVIIPAGVP 107
++++ L+ D+VI P
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFP 88
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 32.5 bits (75), Expect = 0.10
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A +++++VII + F+ V+ + + +A +I +
Sbjct: 67 SKAAYKEAELVIIATPTNYNSR---INYFDTQH--VETVIKEVLSVNSHAT--LI---IK 116
Query: 150 STVPI--AAEVFKKAGTYN 166
ST+PI E+ +K T
Sbjct: 117 STIPIGFITEMRQKFQTDR 135
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.3 bits (74), Expect = 0.12
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----A 69
+ G + +V V+GA G + + L+S L V
Sbjct: 7 HHHHSSGRENLYFQGMRVLVVGANGKVAR---------YLLSELKNKGHEPVAMVRNEEQ 57
Query: 70 ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
S++ + A D V+ AG G +
Sbjct: 58 GPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADK 102
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 32.6 bits (75), Expect = 0.12
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A ++D VII P + FN + V+ + + + PNA++ +
Sbjct: 103 KHDAYRNADYVIIATPTDYDPK---TNYFNTST--VEAVIRDVTEINPNAVM-----IIK 152
Query: 150 STVPI--AAEVFKKAGTYN 166
ST+P+ ++ ++ G N
Sbjct: 153 STIPVGFTRDIKERLGIDN 171
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.8 bits (72), Expect = 0.21
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 30 KVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
K+ +LG G IG+ + A + NP + + A P ++ V G+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 88 ----DQLGQALEDSDVVIIPAG 105
+ L +A++ D+VI AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 31.1 bits (70), Expect = 0.24
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
+ +LGAAG I Q L + + T + H +
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 90 LGQALEDSDVVIIPAG 105
L QA+ +++VV + A
Sbjct: 67 LEQAVTNAEVVFVGAM 82
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 30.7 bits (70), Expect = 0.38
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+ V ++GA G +G +A L + + + V Y+G
Sbjct: 139 EFSVGIMGA-GVLGAKVA---------ESLQAWG-FPLRCWSR---SRKSWPGVESYVGR 184
Query: 88 DQLGQALEDSDVVI 101
++L L + V+I
Sbjct: 185 EELRAFLNQTRVLI 198
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.7 bits (69), Expect = 0.45
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY 84
++ VAVLG G +G +A K L +++ + + A +
Sbjct: 152 TIHGANVAVLGL-GRVGMSVA--RKFAALGAKVKVGA--RESDLLARI-----AEMGMEP 201
Query: 85 MGNDQLGQALEDSDVVI--IPAGV 106
+ Q L D DV I IPA V
Sbjct: 202 FHISKAAQELRDVDVCINTIPALV 225
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.4 bits (69), Expect = 0.53
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
+ + + + R + +LG G IGQ +A + GV+ R
Sbjct: 131 QSHPYQGLKGRTLLILGT-GSIGQHIA---------HTGKHFG-MKVLGVSR---SGRER 176
Query: 79 SEVAGYMGNDQLGQALEDSDVVI 101
+ L + L +DV++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIV 199
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 0.54
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGY 84
+V ++G G IG+ + A + +P R + + + + + A
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
+ +L AL+ DVVI + L + A
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA 102
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 30.1 bits (68), Expect = 0.62
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIA 63
V + VLG AG IGQ + + K NP +L + DI+
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVVDIS 69
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.3 bits (68), Expect = 0.66
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
E+ K+ + G G IG + +KL + + T + + +
Sbjct: 6 EENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTT-LLDEFQSLGAIIVK 64
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVP 107
+++L + ++ DVVI P
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAFP 90
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNIN-AGIVKDLCSAIAKYCPNAI-VNMISNPV 148
+ D ++ G+ + D N++ +L A+ K PN + VN PV
Sbjct: 569 ELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPV 627
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.0 bits (63), Expect = 2.6
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYD------IANTPGVAADVGHINTRSEVAG 83
K+A+ GA G G A+ + G V
Sbjct: 5 KIAIFGATGQTGLTTL----------AQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD 54
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
+ + + + D VI+ G T
Sbjct: 55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVM 87
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 28.0 bits (62), Expect = 3.2
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 57 LALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQALEDSDVV 100
+ + D+GH R+ +AG N + +ALE +++
Sbjct: 154 CVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEII 213
Query: 101 IIPAGVPRKPGMTRDDL 117
+ A RKP +
Sbjct: 214 PLFAIKQRKPEFIKKTF 230
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.1 bits (63), Expect = 3.2
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 29 RKVAVLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+K V+ + +G+PLA LL V + + E G
Sbjct: 178 KKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRGESLKLNKHHVEDLGEYSE 236
Query: 88 DQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGI-------VKDLCSAI 132
D L + DSDVVI ++ IN VK+ S
Sbjct: 237 DLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLY 291
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 28.1 bits (62), Expect = 3.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 21 YSSESVPDRKVAVLGAAGGIGQPLA 45
S P +V + GA G IGQ +A
Sbjct: 3 VSPVPSPKGRVLIAGATGFIGQFVA 27
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 27.6 bits (62), Expect = 4.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
SV V + GA GIG+ A + L S+L L+DI
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAY--EFAKLKSKLVLWDI 63
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 27.3 bits (61), Expect = 4.2
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 30 KVAVLGAAGGIGQPLA-LLMKLNPLVSRLA-----LYDIANTPGVAADVGHINTRSEVAG 83
K+ ++G+ G +G+ L L + + A + N V DV
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVD---------- 51
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
+++ + L D +I +G K + D +
Sbjct: 52 -WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVK 88
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.2 bits (60), Expect = 5.8
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--- 83
++ ++GA G IG+ + A L L L +T ++ + + +G
Sbjct: 5 SRILLIGATGYIGRHVAKASL-DLGHPTFLLV---RESTASSNSEKAQLLESFKASGANI 60
Query: 84 ----YMGNDQLGQALEDSDVVI 101
+ L +A+++ DVVI
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVI 82
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 26.9 bits (59), Expect = 6.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 29 RKVAVLGAAGGIGQPLALLMK 49
+ VA+LGA G +G + +
Sbjct: 12 KTVAILGAGGKMGARITRKIH 32
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 26.6 bits (59), Expect = 7.0
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 39/120 (32%)
Query: 30 KVAVLGAAGGIGQPL--ALL-------------MKLNPLVSRLALYDIANTPGVAADVGH 74
K+ ++GA+G +G L L K+ L + ADV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--------KKADVSS 57
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
+ D++ + + +D VI PG D+++ + + + K
Sbjct: 58 L------------DEVCEVCKGADAVISAFN----PGWNNPDIYDETIKVYLTIIDGVKK 101
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 26.7 bits (59), Expect = 7.1
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
+ V +LGA+G G+ L + L S++ L I + + N EV + D
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFDEEAYKNVNQEVVDFEKLD 76
Query: 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
A + DV G R + ++ D A+
Sbjct: 77 DYASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDR----DYVLKSAELA 119
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 26.8 bits (59), Expect = 7.3
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMG-N 87
+ A+ G AG I +K V +A D A G+ + +E +
Sbjct: 5 RFALTGLAGYIAPRHLKAIKEVGGV-LVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYL 63
Query: 88 DQLGQALEDSDVVII 102
+ L E D + I
Sbjct: 64 EDLRDRGEGVDYLSI 78
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.5 bits (59), Expect = 8.3
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
++ ++ +++ + G G IGQ LA L + + P
Sbjct: 128 LPMTTSTLTGQQLLIYGT-GQIGQSLAAKAS--ALGMHVIGVNTTGHPADHFHETV---- 180
Query: 79 SEVAGYMGNDQLGQALEDSDVVII 102
AL ++ ++
Sbjct: 181 -------AFTATADALATANFIVN 197
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding,
transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Length = 87
Score = 25.2 bits (55), Expect = 8.8
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
YAGK + + + + Q T L+D ++KAL
Sbjct: 34 YAGKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTMLKGLSDAELKALAD 81
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 26.9 bits (60), Expect = 9.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 7 RSVKTLAKPAGARGYSSESVPDRKVAVLGA---AGGI 40
+S + P+GA ++ + P V VLG GI
Sbjct: 295 KSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGI 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.367
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,824,442
Number of extensions: 246280
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 122
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)