Query 025207
Match_columns 256
No_of_seqs 159 out of 2022
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3191 Predicted N6-DNA-methy 100.0 4.5E-27 9.8E-32 179.2 19.1 194 14-213 15-208 (209)
2 COG2890 HemK Methylase of poly 100.0 5.2E-27 1.1E-31 197.7 21.4 187 10-209 82-274 (280)
3 PRK14966 unknown domain/N5-glu 99.9 4E-26 8.6E-31 198.8 22.3 189 11-210 225-417 (423)
4 PRK01544 bifunctional N5-gluta 99.9 5.1E-26 1.1E-30 206.3 21.6 195 10-212 85-307 (506)
5 COG4123 Predicted O-methyltran 99.9 9E-26 2E-30 183.8 17.6 194 11-219 20-218 (248)
6 TIGR00536 hemK_fam HemK family 99.9 1.2E-24 2.6E-29 184.7 22.2 190 10-209 84-280 (284)
7 TIGR03704 PrmC_rel_meth putati 99.9 1.4E-24 3E-29 180.8 20.8 179 10-197 56-239 (251)
8 TIGR00537 hemK_rel_arch HemK-r 99.9 9E-24 2E-28 167.7 20.6 178 17-211 1-178 (179)
9 KOG2904 Predicted methyltransf 99.9 7.6E-24 1.6E-28 171.4 18.7 195 11-210 117-326 (328)
10 TIGR03533 L3_gln_methyl protei 99.9 3.8E-23 8.2E-28 175.1 20.1 172 11-193 92-269 (284)
11 PRK09328 N5-glutamine S-adenos 99.9 1E-22 2.3E-27 172.3 21.0 188 10-208 79-272 (275)
12 TIGR03534 RF_mod_PrmC protein- 99.9 1.8E-22 3.9E-27 168.5 20.7 186 9-206 58-249 (251)
13 PRK11805 N5-glutamine S-adenos 99.9 1.9E-22 4E-27 172.4 20.2 173 10-193 103-281 (307)
14 PRK14967 putative methyltransf 99.9 5.2E-22 1.1E-26 163.0 21.0 178 9-198 7-184 (223)
15 PLN02672 methionine S-methyltr 99.9 3.6E-22 7.9E-27 191.4 19.7 182 10-199 88-304 (1082)
16 PRK14968 putative methyltransf 99.9 5.4E-21 1.2E-25 152.6 20.8 182 14-211 2-186 (188)
17 PF05175 MTS: Methyltransferas 99.9 1.9E-21 4.2E-26 153.0 16.8 140 11-180 4-147 (170)
18 PRK15001 SAM-dependent 23S rib 99.8 7.8E-19 1.7E-23 153.1 19.3 168 11-215 201-375 (378)
19 COG2813 RsmC 16S RNA G1207 met 99.8 8.6E-19 1.9E-23 145.8 17.0 165 11-213 131-299 (300)
20 PF13659 Methyltransf_26: Meth 99.8 6E-19 1.3E-23 130.1 12.6 114 43-174 1-116 (117)
21 PRK09489 rsmC 16S ribosomal RN 99.8 1E-17 2.2E-22 145.1 19.3 167 11-215 169-338 (342)
22 PRK11727 23S rRNA mA1618 methy 99.8 2.4E-17 5.2E-22 140.7 20.1 187 5-197 71-291 (321)
23 TIGR00138 gidB 16S rRNA methyl 99.8 2.6E-17 5.6E-22 130.5 17.4 134 42-208 42-179 (181)
24 COG2264 PrmA Ribosomal protein 99.8 2.7E-17 5.8E-22 137.7 17.5 139 24-199 149-289 (300)
25 PRK00107 gidB 16S rRNA methylt 99.8 1.2E-16 2.6E-21 127.0 19.5 135 42-209 45-184 (187)
26 TIGR01177 conserved hypothetic 99.8 9.6E-17 2.1E-21 139.1 18.3 154 17-197 160-314 (329)
27 PHA03411 putative methyltransf 99.7 5.6E-17 1.2E-21 134.3 14.9 139 41-193 63-209 (279)
28 PF12847 Methyltransf_18: Meth 99.7 4.3E-17 9.4E-22 119.1 12.6 108 42-173 1-111 (112)
29 COG2226 UbiE Methylase involve 99.7 3.6E-17 7.8E-22 133.5 13.1 120 41-187 50-170 (238)
30 PF13847 Methyltransf_31: Meth 99.7 5.7E-17 1.2E-21 125.2 12.1 110 41-175 2-112 (152)
31 PRK00121 trmB tRNA (guanine-N( 99.7 1.1E-16 2.3E-21 129.5 14.0 135 41-194 39-177 (202)
32 TIGR02752 MenG_heptapren 2-hep 99.7 7.3E-16 1.6E-20 127.2 19.3 108 41-174 44-152 (231)
33 PF06325 PrmA: Ribosomal prote 99.7 3.3E-16 7.1E-21 132.3 16.5 135 24-197 148-282 (295)
34 PF01209 Ubie_methyltran: ubiE 99.7 6.4E-17 1.4E-21 133.1 11.7 120 41-186 46-166 (233)
35 PRK08287 cobalt-precorrin-6Y C 99.7 1.9E-15 4.1E-20 120.8 19.7 122 41-194 30-152 (187)
36 COG2242 CobL Precorrin-6B meth 99.7 1.1E-15 2.4E-20 118.8 15.4 122 40-192 32-154 (187)
37 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.6E-16 3.4E-21 127.9 10.7 115 42-185 59-173 (243)
38 PLN02233 ubiquinone biosynthes 99.7 3.4E-15 7.3E-20 125.3 18.8 108 41-174 72-183 (261)
39 PRK15128 23S rRNA m(5)C1962 me 99.7 9E-16 1.9E-20 135.3 15.5 147 42-205 220-376 (396)
40 TIGR00091 tRNA (guanine-N(7)-) 99.7 8.5E-16 1.9E-20 123.4 14.1 132 42-190 16-149 (194)
41 PRK10901 16S rRNA methyltransf 99.7 3.3E-15 7.2E-20 133.8 19.1 142 41-189 243-391 (427)
42 PRK11207 tellurite resistance 99.7 1.3E-15 2.8E-20 122.7 14.7 104 42-173 30-134 (197)
43 PLN02244 tocopherol O-methyltr 99.7 4.7E-15 1E-19 129.0 18.8 106 41-174 117-224 (340)
44 PRK14902 16S rRNA methyltransf 99.7 4.5E-15 9.7E-20 133.6 19.1 166 15-193 229-403 (444)
45 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.6E-15 3.5E-20 143.1 16.6 148 42-206 538-688 (702)
46 PRK13168 rumA 23S rRNA m(5)U19 99.7 4.3E-15 9.2E-20 133.7 18.7 153 11-198 267-424 (443)
47 PRK00517 prmA ribosomal protei 99.7 9E-15 2E-19 122.0 18.7 133 24-198 106-238 (250)
48 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.6E-14 3.5E-19 124.4 20.6 148 20-198 93-256 (340)
49 PRK11036 putative S-adenosyl-L 99.7 4.6E-15 9.9E-20 124.2 16.6 106 41-174 43-150 (255)
50 TIGR00477 tehB tellurite resis 99.7 1.2E-15 2.7E-20 122.6 12.0 104 42-173 30-133 (195)
51 PRK00377 cbiT cobalt-precorrin 99.7 1.4E-14 3E-19 116.8 17.9 128 41-196 39-168 (198)
52 PRK10909 rsmD 16S rRNA m(2)G96 99.7 6.1E-15 1.3E-19 118.3 15.3 124 21-174 34-160 (199)
53 PLN02396 hexaprenyldihydroxybe 99.6 6.8E-15 1.5E-19 126.3 16.3 127 41-196 130-287 (322)
54 PRK15451 tRNA cmo(5)U34 methyl 99.6 2.8E-15 6E-20 124.9 13.2 109 41-174 55-165 (247)
55 PHA03412 putative methyltransf 99.6 3.9E-15 8.6E-20 120.7 13.6 129 14-168 30-158 (241)
56 TIGR00446 nop2p NOL1/NOP2/sun 99.6 9.4E-15 2E-19 122.8 16.4 159 16-188 51-216 (264)
57 TIGR00406 prmA ribosomal prote 99.6 9.2E-15 2E-19 124.4 16.5 121 41-195 158-280 (288)
58 COG1041 Predicted DNA modifica 99.6 9.8E-15 2.1E-19 123.9 15.7 156 17-200 175-332 (347)
59 COG2263 Predicted RNA methylas 99.6 2.8E-14 6E-19 110.7 16.6 124 41-197 44-167 (198)
60 PRK11873 arsM arsenite S-adeno 99.6 2.4E-14 5.1E-19 121.1 17.6 130 41-196 76-228 (272)
61 PRK14901 16S rRNA methyltransf 99.6 2.2E-14 4.7E-19 128.7 18.3 167 41-213 251-432 (434)
62 PF01170 UPF0020: Putative RNA 99.6 1.4E-14 3E-19 114.7 15.0 156 18-196 7-169 (179)
63 PF13649 Methyltransf_25: Meth 99.6 1.2E-15 2.6E-20 109.6 8.1 100 46-167 1-101 (101)
64 PRK14904 16S rRNA methyltransf 99.6 4.5E-14 9.7E-19 127.1 19.8 164 14-192 228-400 (445)
65 PRK14121 tRNA (guanine-N(7)-)- 99.6 1.2E-14 2.6E-19 126.5 14.9 130 41-189 121-251 (390)
66 PRK04266 fibrillarin; Provisio 99.6 1.4E-13 3E-18 112.8 20.3 132 40-199 70-211 (226)
67 PRK07402 precorrin-6B methylas 99.6 1.3E-13 2.7E-18 111.0 19.7 131 26-189 27-158 (196)
68 PRK10258 biotin biosynthesis p 99.6 1.5E-14 3.2E-19 120.9 14.6 126 25-186 28-153 (251)
69 TIGR02469 CbiT precorrin-6Y C5 99.6 3.7E-14 8E-19 105.2 15.2 117 25-173 5-122 (124)
70 PRK14103 trans-aconitate 2-met 99.6 8.2E-15 1.8E-19 122.7 12.5 99 41-173 28-126 (255)
71 PTZ00098 phosphoethanolamine N 99.6 2.7E-14 5.9E-19 120.0 15.6 107 41-174 51-157 (263)
72 TIGR00740 methyltransferase, p 99.6 3.5E-14 7.6E-19 117.8 15.6 109 41-174 52-162 (239)
73 TIGR02085 meth_trns_rumB 23S r 99.6 7.1E-14 1.5E-18 123.0 18.3 150 11-197 203-355 (374)
74 TIGR00563 rsmB ribosomal RNA s 99.6 1.3E-13 2.7E-18 123.6 19.9 142 41-189 237-387 (426)
75 PF03602 Cons_hypoth95: Conser 99.6 3.4E-14 7.4E-19 112.6 13.7 132 13-176 16-156 (183)
76 PRK03522 rumB 23S rRNA methylu 99.6 1.2E-13 2.5E-18 119.1 18.1 149 12-197 144-295 (315)
77 KOG1271 Methyltransferases [Ge 99.6 2.3E-14 5E-19 110.0 12.0 150 24-193 48-200 (227)
78 PLN02336 phosphoethanolamine N 99.6 3.6E-14 7.8E-19 129.0 15.5 106 41-174 265-370 (475)
79 TIGR00080 pimt protein-L-isoas 99.6 3.7E-14 8.1E-19 115.8 13.7 114 25-173 63-177 (215)
80 PRK14903 16S rRNA methyltransf 99.6 7.9E-14 1.7E-18 124.7 16.9 130 41-177 236-370 (431)
81 PRK01683 trans-aconitate 2-met 99.6 1.3E-14 2.9E-19 121.6 11.2 102 41-174 30-131 (258)
82 PF08241 Methyltransf_11: Meth 99.6 5.1E-15 1.1E-19 104.4 7.3 95 47-171 1-95 (95)
83 PRK13944 protein-L-isoaspartat 99.6 4.6E-14 1E-18 114.3 13.7 114 25-173 58-173 (205)
84 PRK12335 tellurite resistance 99.6 2E-14 4.2E-19 122.4 11.7 104 42-173 120-223 (287)
85 smart00828 PKS_MT Methyltransf 99.6 7.6E-14 1.7E-18 114.6 14.7 127 44-198 1-144 (224)
86 PRK06922 hypothetical protein; 99.6 4E-14 8.7E-19 129.3 13.1 121 42-174 418-538 (677)
87 PF02384 N6_Mtase: N-6 DNA Met 99.6 3.7E-14 8.1E-19 122.1 12.0 191 15-215 26-234 (311)
88 TIGR00452 methyltransferase, p 99.6 3.9E-13 8.5E-18 115.0 18.1 129 40-197 119-272 (314)
89 PF03848 TehB: Tellurite resis 99.6 5.4E-14 1.2E-18 111.4 11.6 104 42-173 30-133 (192)
90 PF02353 CMAS: Mycolic acid cy 99.6 9.6E-14 2.1E-18 116.8 13.8 106 40-174 60-167 (273)
91 COG1092 Predicted SAM-dependen 99.6 1.4E-13 3E-18 120.2 15.1 142 42-201 217-369 (393)
92 PRK05031 tRNA (uracil-5-)-meth 99.5 2.8E-13 6.1E-18 118.7 16.6 146 15-198 182-343 (362)
93 PRK13942 protein-L-isoaspartat 99.5 1.3E-13 2.9E-18 112.1 13.1 115 24-173 61-176 (212)
94 PTZ00146 fibrillarin; Provisio 99.5 2.6E-12 5.7E-17 107.7 20.9 170 17-213 106-287 (293)
95 KOG1540 Ubiquinone biosynthesi 99.5 4E-13 8.6E-18 108.5 15.3 131 40-193 98-234 (296)
96 PRK08317 hypothetical protein; 99.5 7.4E-13 1.6E-17 109.3 17.6 120 26-174 6-125 (241)
97 TIGR00479 rumA 23S rRNA (uraci 99.5 5.8E-13 1.3E-17 119.7 18.0 154 11-198 262-420 (431)
98 TIGR00095 RNA methyltransferas 99.5 4.5E-13 9.8E-18 106.9 15.4 105 42-173 49-159 (189)
99 TIGR02072 BioC biotin biosynth 99.5 2.9E-13 6.2E-18 111.8 14.8 126 26-181 18-143 (240)
100 PLN02585 magnesium protoporphy 99.5 3.8E-13 8.3E-18 115.1 15.6 104 15-129 117-226 (315)
101 PF02390 Methyltransf_4: Putat 99.5 2E-13 4.3E-18 109.5 12.9 132 41-189 16-149 (195)
102 COG4106 Tam Trans-aconitate me 99.5 6E-14 1.3E-18 110.6 9.4 108 37-176 25-132 (257)
103 PRK15068 tRNA mo(5)U34 methylt 99.5 1.1E-12 2.3E-17 113.2 18.0 139 28-198 111-274 (322)
104 PRK00216 ubiE ubiquinone/menaq 99.5 1.5E-12 3.3E-17 107.5 18.4 108 41-174 50-159 (239)
105 COG2519 GCD14 tRNA(1-methylade 99.5 2.3E-13 5E-18 110.5 12.8 123 41-195 93-217 (256)
106 PF08242 Methyltransf_12: Meth 99.5 3.4E-15 7.4E-20 106.8 1.6 98 47-169 1-99 (99)
107 COG2230 Cfa Cyclopropane fatty 99.5 5.4E-13 1.2E-17 111.0 14.9 108 40-176 70-179 (283)
108 TIGR03438 probable methyltrans 99.5 3.2E-13 6.8E-18 115.7 13.4 145 7-175 30-179 (301)
109 PLN02781 Probable caffeoyl-CoA 99.5 5.4E-13 1.2E-17 110.1 14.2 104 41-171 67-176 (234)
110 PF08704 GCD14: tRNA methyltra 99.5 4.8E-13 1E-17 110.3 13.8 128 41-197 39-170 (247)
111 PRK04457 spermidine synthase; 99.5 1.7E-12 3.8E-17 108.8 16.9 129 41-192 65-196 (262)
112 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 3.5E-12 7.6E-17 104.3 17.5 106 41-174 38-144 (223)
113 TIGR03587 Pse_Me-ase pseudamin 99.5 5.3E-13 1.2E-17 107.9 12.0 127 15-173 14-142 (204)
114 TIGR02021 BchM-ChlM magnesium 99.5 9.6E-13 2.1E-17 107.7 13.6 101 41-171 54-156 (219)
115 PF13489 Methyltransf_23: Meth 99.5 9.5E-13 2.1E-17 102.0 12.7 98 41-176 21-118 (161)
116 TIGR02716 C20_methyl_CrtF C-20 99.5 2.9E-12 6.2E-17 110.2 16.6 106 41-174 148-255 (306)
117 PRK00312 pcm protein-L-isoaspa 99.5 1.4E-12 3E-17 106.3 13.9 111 25-173 64-175 (212)
118 PRK11088 rrmA 23S rRNA methylt 99.5 5.9E-13 1.3E-17 112.5 12.0 111 41-186 84-194 (272)
119 KOG1270 Methyltransferases [Co 99.5 7.1E-14 1.5E-18 113.4 6.0 103 43-177 90-199 (282)
120 PRK11188 rrmJ 23S rRNA methylt 99.5 3.9E-12 8.5E-17 103.2 16.2 131 41-197 50-188 (209)
121 PRK11705 cyclopropane fatty ac 99.5 1.3E-12 2.8E-17 115.2 14.4 103 41-174 166-268 (383)
122 PRK06202 hypothetical protein; 99.5 1.2E-12 2.6E-17 108.1 12.9 101 41-164 59-159 (232)
123 TIGR02143 trmA_only tRNA (urac 99.5 4.2E-12 9.1E-17 110.9 16.7 143 17-197 175-333 (353)
124 TIGR02987 met_A_Alw26 type II 99.5 6.9E-13 1.5E-17 121.9 12.3 172 15-189 4-216 (524)
125 PF10672 Methyltrans_SAM: S-ad 99.5 3.2E-12 6.9E-17 107.6 15.1 129 42-190 123-256 (286)
126 PLN02476 O-methyltransferase 99.4 3E-12 6.6E-17 107.1 14.7 104 41-171 117-226 (278)
127 PF01135 PCMT: Protein-L-isoas 99.4 1E-12 2.2E-17 106.2 11.2 114 25-173 58-172 (209)
128 COG0742 N6-adenine-specific me 99.4 3E-12 6.4E-17 100.3 13.3 128 16-174 20-155 (187)
129 PRK11783 rlmL 23S rRNA m(2)G24 99.4 6.7E-12 1.5E-16 118.7 18.2 140 19-174 169-348 (702)
130 PRK05134 bifunctional 3-demeth 99.4 1.1E-11 2.4E-16 102.4 17.2 106 41-174 47-152 (233)
131 COG2265 TrmA SAM-dependent met 99.4 2.2E-12 4.7E-17 114.7 13.7 154 10-197 262-419 (432)
132 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.5E-12 3.2E-17 105.9 11.4 121 24-174 20-153 (213)
133 PRK00811 spermidine synthase; 99.4 7.4E-12 1.6E-16 106.2 16.0 109 41-173 75-191 (283)
134 smart00138 MeTrc Methyltransfe 99.4 9E-13 1.9E-17 110.7 9.9 127 24-171 80-240 (264)
135 PLN03075 nicotianamine synthas 99.4 4.8E-12 1E-16 106.6 14.0 108 41-173 122-233 (296)
136 COG4122 Predicted O-methyltran 99.4 5.3E-12 1.2E-16 101.8 13.6 117 22-171 45-164 (219)
137 PRK05785 hypothetical protein; 99.4 6.6E-12 1.4E-16 103.2 14.5 91 42-167 51-141 (226)
138 KOG4300 Predicted methyltransf 99.4 1.8E-12 3.9E-17 101.6 10.4 117 43-186 77-195 (252)
139 PRK07580 Mg-protoporphyrin IX 99.4 1.6E-11 3.5E-16 101.1 16.3 113 28-170 49-163 (230)
140 TIGR01983 UbiG ubiquinone bios 99.4 1E-11 2.2E-16 101.8 15.1 105 42-174 45-150 (224)
141 COG2518 Pcm Protein-L-isoaspar 99.4 2.6E-12 5.7E-17 102.1 11.0 110 26-173 59-169 (209)
142 PF02475 Met_10: Met-10+ like- 99.4 3.5E-12 7.6E-17 102.1 10.8 122 11-171 77-200 (200)
143 smart00650 rADc Ribosomal RNA 99.4 6.4E-12 1.4E-16 98.7 12.2 78 41-127 12-89 (169)
144 PLN02336 phosphoethanolamine N 99.4 3.5E-12 7.6E-17 116.1 12.1 126 41-192 36-176 (475)
145 PF05971 Methyltransf_10: Prot 99.4 1.5E-11 3.3E-16 103.5 14.7 182 5-194 62-278 (299)
146 PF01596 Methyltransf_3: O-met 99.4 7.2E-12 1.6E-16 100.9 12.2 103 42-171 45-153 (205)
147 COG0220 Predicted S-adenosylme 99.4 5E-12 1.1E-16 103.1 11.3 122 43-181 49-172 (227)
148 KOG1541 Predicted protein carb 99.4 1.4E-11 3E-16 97.6 13.3 161 26-208 35-199 (270)
149 PRK11933 yebU rRNA (cytosine-C 99.4 4.9E-11 1.1E-15 107.2 18.6 153 15-178 90-247 (470)
150 PRK01581 speE spermidine synth 99.4 1.5E-10 3.2E-15 99.8 20.7 136 41-197 149-296 (374)
151 PF05401 NodS: Nodulation prot 99.4 1.2E-11 2.7E-16 97.1 12.8 145 41-213 42-196 (201)
152 PF07021 MetW: Methionine bios 99.4 1.1E-11 2.4E-16 97.2 12.3 102 41-177 12-113 (193)
153 PF05958 tRNA_U5-meth_tr: tRNA 99.4 2.6E-12 5.7E-17 112.1 9.7 100 15-124 172-287 (352)
154 PRK13943 protein-L-isoaspartat 99.4 1.7E-11 3.8E-16 105.2 14.3 113 26-173 67-180 (322)
155 COG0116 Predicted N6-adenine-s 99.4 1.3E-11 2.9E-16 106.3 13.2 136 20-173 172-344 (381)
156 PRK13255 thiopurine S-methyltr 99.4 6.3E-12 1.4E-16 102.5 10.5 104 41-173 36-155 (218)
157 TIGR00417 speE spermidine synt 99.3 6.6E-11 1.4E-15 99.9 16.7 112 41-174 71-187 (270)
158 TIGR00438 rrmJ cell division p 99.3 5.7E-11 1.2E-15 94.9 15.1 130 41-196 31-168 (188)
159 PLN02366 spermidine synthase 99.3 8.9E-11 1.9E-15 100.3 16.9 111 41-172 90-205 (308)
160 COG4976 Predicted methyltransf 99.3 2.8E-12 6E-17 102.1 6.5 127 41-198 124-265 (287)
161 PRK04338 N(2),N(2)-dimethylgua 99.3 3.8E-11 8.2E-16 105.6 14.3 126 15-173 31-158 (382)
162 KOG3420 Predicted RNA methylas 99.3 1.2E-11 2.5E-16 91.7 8.9 108 13-130 21-129 (185)
163 PLN02589 caffeoyl-CoA O-methyl 99.3 6.6E-11 1.4E-15 97.9 13.9 103 42-171 79-188 (247)
164 COG0144 Sun tRNA and rRNA cyto 99.3 3.9E-10 8.6E-15 98.5 19.0 166 13-189 133-307 (355)
165 cd02440 AdoMet_MTases S-adenos 99.3 3.1E-11 6.8E-16 85.5 10.1 102 45-172 1-103 (107)
166 COG0357 GidB Predicted S-adeno 99.3 1.1E-10 2.5E-15 93.9 13.8 152 19-202 42-199 (215)
167 TIGR02081 metW methionine bios 99.3 1E-10 2.2E-15 93.9 13.6 78 42-130 13-90 (194)
168 PF08003 Methyltransf_9: Prote 99.3 2.9E-10 6.3E-15 95.1 16.4 138 29-198 105-267 (315)
169 PRK03612 spermidine synthase; 99.3 9.1E-11 2E-15 107.5 14.6 131 41-192 296-438 (521)
170 COG2521 Predicted archaeal met 99.3 2.1E-11 4.5E-16 97.4 8.7 131 40-194 132-273 (287)
171 COG2520 Predicted methyltransf 99.3 4.5E-10 9.7E-15 96.3 16.6 144 11-193 164-315 (341)
172 PF10294 Methyltransf_16: Puta 99.2 2E-10 4.3E-15 90.5 12.9 130 21-176 21-159 (173)
173 PF02527 GidB: rRNA small subu 99.2 4E-10 8.7E-15 89.2 14.4 143 21-196 25-173 (184)
174 PRK01544 bifunctional N5-gluta 99.2 1.3E-10 2.8E-15 106.0 13.1 136 40-192 345-482 (506)
175 KOG2361 Predicted methyltransf 99.2 4.3E-11 9.4E-16 96.2 8.4 121 30-173 56-183 (264)
176 COG0286 HsdM Type I restrictio 99.2 1.2E-10 2.5E-15 105.9 11.1 168 15-189 166-347 (489)
177 PTZ00338 dimethyladenosine tra 99.2 2.1E-10 4.6E-15 97.5 11.0 91 26-129 23-115 (294)
178 PRK14896 ksgA 16S ribosomal RN 99.2 1.9E-10 4.1E-15 96.4 10.4 90 25-128 15-104 (258)
179 PRK00274 ksgA 16S ribosomal RN 99.2 1.7E-10 3.7E-15 97.5 9.8 89 26-127 29-117 (272)
180 PRK13256 thiopurine S-methyltr 99.2 3.5E-10 7.7E-15 92.1 11.2 122 24-174 29-164 (226)
181 PF05724 TPMT: Thiopurine S-me 99.2 4.6E-10 9.9E-15 91.5 11.7 130 41-197 36-189 (218)
182 PF09445 Methyltransf_15: RNA 99.1 2.2E-10 4.8E-15 88.4 8.7 131 44-188 1-134 (163)
183 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 2.9E-09 6.3E-14 90.3 15.0 163 15-189 64-238 (283)
184 PF06080 DUF938: Protein of un 99.1 1.9E-09 4.1E-14 85.8 13.0 124 24-174 11-142 (204)
185 TIGR00308 TRM1 tRNA(guanine-26 99.1 2.5E-09 5.4E-14 93.7 14.5 131 14-173 14-147 (374)
186 PF05185 PRMT5: PRMT5 arginine 99.1 8.6E-10 1.9E-14 98.8 9.6 106 43-170 187-294 (448)
187 COG3129 Predicted SAM-dependen 99.0 3.2E-10 6.9E-15 90.5 5.6 123 5-131 37-169 (292)
188 PLN02823 spermine synthase 99.0 5.9E-09 1.3E-13 90.1 13.7 113 41-173 102-220 (336)
189 KOG2899 Predicted methyltransf 99.0 2.6E-09 5.6E-14 86.0 9.5 125 41-188 57-224 (288)
190 TIGR00755 ksgA dimethyladenosi 99.0 7.8E-09 1.7E-13 86.5 12.6 87 26-126 16-105 (253)
191 PF05891 Methyltransf_PK: AdoM 99.0 3.2E-09 6.8E-14 85.0 9.6 137 42-204 55-207 (218)
192 KOG1499 Protein arginine N-met 99.0 1.6E-09 3.4E-14 92.0 8.3 103 42-170 60-164 (346)
193 KOG2915 tRNA(1-methyladenosine 99.0 1.7E-08 3.7E-13 82.7 13.5 129 41-198 104-235 (314)
194 KOG1663 O-methyltransferase [S 99.0 2E-08 4.3E-13 80.6 13.4 103 42-171 73-181 (237)
195 KOG2187 tRNA uracil-5-methyltr 99.0 5.5E-09 1.2E-13 92.5 10.4 135 11-177 353-494 (534)
196 PF03291 Pox_MCEL: mRNA cappin 98.9 6.4E-09 1.4E-13 89.8 10.3 122 42-188 62-198 (331)
197 KOG2671 Putative RNA methylase 98.9 1.8E-09 3.9E-14 90.9 6.4 127 41-175 207-356 (421)
198 PF01739 CheR: CheR methyltran 98.9 7.1E-09 1.5E-13 83.0 9.3 127 24-171 12-173 (196)
199 KOG1661 Protein-L-isoaspartate 98.9 9E-09 1.9E-13 81.2 9.4 115 26-172 67-192 (237)
200 PF00891 Methyltransf_2: O-met 98.9 1.5E-08 3.3E-13 84.1 11.1 99 42-174 100-200 (241)
201 PF05148 Methyltransf_8: Hypot 98.9 4.1E-08 8.8E-13 78.0 12.6 127 42-216 72-200 (219)
202 KOG1975 mRNA cap methyltransfe 98.9 1.1E-08 2.4E-13 85.6 8.7 140 25-189 100-250 (389)
203 PF01861 DUF43: Protein of unk 98.9 2.5E-07 5.5E-12 75.2 16.2 133 41-201 43-181 (243)
204 PF01564 Spermine_synth: Sperm 98.9 8.1E-08 1.8E-12 79.8 13.5 115 41-176 75-194 (246)
205 PLN02232 ubiquinone biosynthes 98.8 8.1E-08 1.8E-12 74.7 11.6 79 74-175 1-83 (160)
206 KOG3010 Methyltransferase [Gen 98.8 1.1E-08 2.3E-13 82.5 6.6 120 42-191 33-157 (261)
207 COG3963 Phospholipid N-methylt 98.8 1E-07 2.3E-12 72.6 11.5 123 24-175 33-158 (194)
208 PRK04148 hypothetical protein; 98.8 5.4E-08 1.2E-12 72.5 9.8 83 26-124 3-87 (134)
209 PF04816 DUF633: Family of unk 98.8 3.9E-07 8.4E-12 73.5 15.5 142 46-218 1-144 (205)
210 PF11599 AviRa: RRNA methyltra 98.8 2.8E-07 6.1E-12 73.2 14.1 120 38-171 47-212 (246)
211 TIGR03439 methyl_EasF probable 98.8 1.9E-07 4.1E-12 80.2 14.3 146 7-173 43-197 (319)
212 COG0030 KsgA Dimethyladenosine 98.8 4E-08 8.8E-13 81.3 9.7 91 28-129 19-109 (259)
213 KOG0820 Ribosomal RNA adenine 98.8 3.8E-08 8.2E-13 80.7 9.2 81 40-130 56-138 (315)
214 COG0421 SpeE Spermidine syntha 98.7 3.1E-07 6.7E-12 77.4 13.8 109 43-173 77-190 (282)
215 COG1352 CheR Methylase of chem 98.7 7.9E-08 1.7E-12 80.3 9.5 127 24-171 78-239 (268)
216 PRK10611 chemotaxis methyltran 98.7 7.7E-08 1.7E-12 81.3 9.2 110 42-171 115-260 (287)
217 KOG1122 tRNA and rRNA cytosine 98.7 4.1E-07 9E-12 78.9 13.1 143 40-188 239-388 (460)
218 PF01269 Fibrillarin: Fibrilla 98.7 4E-06 8.7E-11 67.4 17.1 180 6-212 32-227 (229)
219 PF12147 Methyltransf_20: Puta 98.7 2E-06 4.3E-11 71.7 15.5 128 41-188 134-265 (311)
220 KOG3045 Predicted RNA methylas 98.6 6.1E-07 1.3E-11 73.2 12.0 125 42-216 180-306 (325)
221 TIGR00478 tly hemolysin TlyA f 98.6 1.4E-07 3E-12 77.3 7.6 40 41-85 74-113 (228)
222 PRK00050 16S rRNA m(4)C1402 me 98.6 3E-07 6.5E-12 78.0 9.7 90 27-123 7-98 (296)
223 PRK10742 putative methyltransf 98.6 1E-06 2.2E-11 72.4 11.9 82 42-130 86-179 (250)
224 PF05219 DREV: DREV methyltran 98.6 3.8E-07 8.1E-12 74.9 9.3 95 42-173 94-188 (265)
225 KOG2730 Methylase [General fun 98.6 1E-07 2.2E-12 75.8 5.6 105 13-129 69-179 (263)
226 KOG1500 Protein arginine N-met 98.6 3.5E-07 7.6E-12 77.2 8.9 103 41-171 176-280 (517)
227 COG3897 Predicted methyltransf 98.6 2.4E-07 5.2E-12 72.5 7.0 105 41-177 78-182 (218)
228 KOG2912 Predicted DNA methylas 98.5 3.1E-06 6.7E-11 71.0 13.7 187 5-197 63-274 (419)
229 PRK00536 speE spermidine synth 98.5 3E-06 6.6E-11 70.7 13.0 95 41-172 71-170 (262)
230 PF01728 FtsJ: FtsJ-like methy 98.5 1.4E-06 3E-11 69.1 10.3 147 29-199 10-165 (181)
231 PF06962 rRNA_methylase: Putat 98.5 5.8E-06 1.3E-10 62.1 12.8 94 72-177 1-96 (140)
232 KOG3201 Uncharacterized conser 98.5 1.1E-06 2.3E-11 66.8 8.4 149 19-194 9-162 (201)
233 PF11968 DUF3321: Putative met 98.4 2.7E-06 5.8E-11 68.1 10.1 134 24-196 32-179 (219)
234 PF13578 Methyltransf_24: Meth 98.4 5E-07 1.1E-11 65.1 4.9 101 47-171 1-103 (106)
235 COG2384 Predicted SAM-dependen 98.4 5.5E-05 1.2E-09 60.7 16.2 127 42-199 16-144 (226)
236 KOG3115 Methyltransferase-like 98.3 1E-06 2.2E-11 69.4 5.6 131 42-191 60-201 (249)
237 TIGR00497 hsdM type I restrict 98.3 2.2E-05 4.9E-10 72.0 14.8 150 42-192 217-379 (501)
238 KOG2198 tRNA cytosine-5-methyl 98.3 1.9E-05 4.1E-10 67.9 13.1 150 41-190 154-316 (375)
239 PF00398 RrnaAD: Ribosomal RNA 98.3 3.3E-06 7.1E-11 71.0 8.4 92 25-126 16-108 (262)
240 COG4076 Predicted RNA methylas 98.3 1.5E-06 3.2E-11 67.7 5.4 70 42-121 32-102 (252)
241 PF09243 Rsm22: Mitochondrial 98.3 2.3E-05 5.1E-10 66.2 12.8 141 27-193 17-163 (274)
242 COG0293 FtsJ 23S rRNA methylas 98.3 5.4E-05 1.2E-09 60.5 14.0 127 41-190 44-176 (205)
243 KOG2940 Predicted methyltransf 98.2 1.5E-06 3.2E-11 69.9 4.4 112 41-181 71-182 (325)
244 TIGR01444 fkbM_fam methyltrans 98.2 5.4E-06 1.2E-10 62.9 7.3 58 45-106 1-59 (143)
245 PF13679 Methyltransf_32: Meth 98.2 1.5E-05 3.2E-10 60.6 9.7 78 41-121 24-105 (141)
246 PF03141 Methyltransf_29: Puta 98.2 3.1E-06 6.7E-11 75.4 6.5 131 13-177 87-223 (506)
247 COG1889 NOP1 Fibrillarin-like 98.2 0.00037 8E-09 55.2 17.2 176 6-209 39-226 (231)
248 PF07942 N2227: N2227-like pro 98.2 5.9E-05 1.3E-09 63.1 13.3 146 24-196 33-240 (270)
249 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 2.3E-05 5.1E-10 65.1 10.6 165 26-212 37-255 (256)
250 PRK13699 putative methylase; P 98.1 2.2E-05 4.8E-10 64.5 10.0 95 98-199 3-99 (227)
251 PF08123 DOT1: Histone methyla 98.1 2.8E-05 6.1E-10 62.7 10.4 125 15-171 20-156 (205)
252 KOG4589 Cell division protein 98.0 4.9E-05 1.1E-09 59.3 8.0 136 41-199 68-210 (232)
253 KOG1709 Guanidinoacetate methy 97.9 0.00012 2.6E-09 58.5 10.2 105 41-171 100-204 (271)
254 COG1189 Predicted rRNA methyla 97.9 0.001 2.2E-08 54.2 15.6 146 15-197 56-223 (245)
255 cd00315 Cyt_C5_DNA_methylase C 97.9 0.00052 1.1E-08 58.1 14.7 150 45-214 2-165 (275)
256 COG4262 Predicted spermidine s 97.9 0.00053 1.1E-08 59.0 14.0 132 41-194 288-432 (508)
257 PF02005 TRM: N2,N2-dimethylgu 97.9 0.00017 3.8E-09 63.5 11.6 103 42-173 49-154 (377)
258 PF07091 FmrO: Ribosomal RNA m 97.9 5.3E-05 1.1E-09 62.2 7.6 74 41-121 104-177 (251)
259 KOG2352 Predicted spermine/spe 97.9 0.00017 3.8E-09 64.2 11.1 152 4-174 6-162 (482)
260 PRK11524 putative methyltransf 97.9 5.5E-05 1.2E-09 64.4 7.8 89 98-193 10-98 (284)
261 KOG3178 Hydroxyindole-O-methyl 97.9 9E-05 1.9E-09 63.5 8.6 99 43-174 178-276 (342)
262 COG1867 TRM1 N2,N2-dimethylgua 97.8 0.0002 4.4E-09 61.7 10.5 101 43-173 53-154 (380)
263 TIGR00006 S-adenosyl-methyltra 97.8 0.00035 7.5E-09 59.6 10.8 91 26-123 7-100 (305)
264 PRK11760 putative 23S rRNA C24 97.8 0.00085 1.8E-08 57.8 13.0 70 41-124 210-279 (357)
265 COG1568 Predicted methyltransf 97.7 0.00034 7.3E-09 58.0 9.9 124 42-192 152-282 (354)
266 COG0500 SmtA SAM-dependent met 97.7 0.0012 2.7E-08 49.5 11.7 105 46-176 52-158 (257)
267 PF03059 NAS: Nicotianamine sy 97.6 0.00097 2.1E-08 56.1 11.7 106 42-172 120-229 (276)
268 PF00145 DNA_methylase: C-5 cy 97.6 0.0016 3.4E-08 56.2 12.9 152 45-215 2-165 (335)
269 KOG2793 Putative N2,N2-dimethy 97.6 0.0024 5.1E-08 52.8 13.0 124 42-192 86-219 (248)
270 PF10354 DUF2431: Domain of un 97.6 0.0024 5.2E-08 49.8 12.1 138 49-197 3-151 (166)
271 COG0275 Predicted S-adenosylme 97.5 0.011 2.5E-07 49.9 15.9 79 40-121 21-102 (314)
272 KOG1269 SAM-dependent methyltr 97.5 0.00046 9.9E-09 60.4 7.5 104 41-172 109-214 (364)
273 PRK01747 mnmC bifunctional tRN 97.4 0.0019 4E-08 61.6 12.1 132 41-195 56-224 (662)
274 KOG3987 Uncharacterized conser 97.4 9E-05 2E-09 58.8 2.2 96 41-173 111-207 (288)
275 PRK11524 putative methyltransf 97.3 0.001 2.2E-08 56.6 8.3 58 24-91 194-251 (284)
276 PRK13699 putative methylase; P 97.3 0.0015 3.2E-08 53.8 8.5 64 19-92 144-207 (227)
277 PF01555 N6_N4_Mtase: DNA meth 97.3 0.0013 2.8E-08 53.6 7.8 59 20-88 173-231 (231)
278 COG4301 Uncharacterized conser 97.2 0.016 3.5E-07 47.6 13.3 142 7-171 46-191 (321)
279 KOG1331 Predicted methyltransf 97.2 0.00066 1.4E-08 56.6 5.5 100 42-174 45-144 (293)
280 PF04989 CmcI: Cephalosporin h 97.2 0.004 8.7E-08 50.0 9.2 106 42-171 32-145 (206)
281 KOG0822 Protein kinase inhibit 97.2 0.001 2.2E-08 59.9 6.2 107 43-171 368-476 (649)
282 PF10237 N6-adenineMlase: Prob 97.1 0.009 1.9E-07 46.3 10.7 132 24-199 12-145 (162)
283 COG0270 Dcm Site-specific DNA 97.1 0.0086 1.9E-07 52.1 11.7 153 43-214 3-169 (328)
284 KOG2798 Putative trehalase [Ca 97.1 0.0063 1.4E-07 51.5 10.2 142 25-195 128-334 (369)
285 PF07669 Eco57I: Eco57I restri 97.0 0.0011 2.3E-08 47.8 4.3 66 115-189 2-72 (106)
286 COG4798 Predicted methyltransf 97.0 0.013 2.8E-07 46.4 10.1 137 40-196 46-203 (238)
287 PHA01634 hypothetical protein 96.9 0.0051 1.1E-07 45.2 7.2 72 41-122 27-99 (156)
288 PF04672 Methyltransf_19: S-ad 96.9 0.013 2.9E-07 48.9 10.6 116 42-178 68-195 (267)
289 KOG1562 Spermidine synthase [A 96.9 0.0062 1.3E-07 51.2 8.3 113 41-174 120-237 (337)
290 PF04445 SAM_MT: Putative SAM- 96.8 0.0038 8.2E-08 51.2 6.6 77 44-127 77-163 (234)
291 COG1565 Uncharacterized conser 96.8 0.008 1.7E-07 52.1 8.4 69 25-93 60-132 (370)
292 KOG4058 Uncharacterized conser 96.7 0.041 8.8E-07 41.6 10.5 75 25-107 58-134 (199)
293 COG1064 AdhP Zn-dependent alco 96.7 0.011 2.4E-07 51.1 8.6 96 41-175 165-261 (339)
294 PF01795 Methyltransf_5: MraW 96.7 0.0036 7.8E-08 53.5 5.5 88 28-122 9-100 (310)
295 PF03141 Methyltransf_29: Puta 96.6 0.011 2.4E-07 53.3 8.3 130 41-200 364-493 (506)
296 KOG1596 Fibrillarin and relate 96.6 0.089 1.9E-06 43.1 12.6 163 24-213 138-311 (317)
297 COG5459 Predicted rRNA methyla 96.5 0.014 3E-07 50.3 8.1 117 40-179 111-231 (484)
298 PRK10458 DNA cytosine methylas 96.5 0.28 6.2E-06 44.7 16.9 164 42-215 87-290 (467)
299 TIGR00675 dcm DNA-methyltransf 96.5 0.1 2.2E-06 45.2 13.5 145 46-212 1-160 (315)
300 KOG1253 tRNA methyltransferase 96.5 0.0043 9.4E-08 55.5 5.0 105 41-173 108-216 (525)
301 KOG2078 tRNA modification enzy 96.4 0.0033 7.1E-08 55.3 3.6 63 41-109 248-313 (495)
302 PF01555 N6_N4_Mtase: DNA meth 96.3 0.0096 2.1E-07 48.3 5.7 72 116-193 1-78 (231)
303 PF00107 ADH_zinc_N: Zinc-bind 95.9 0.032 6.9E-07 41.1 6.4 88 52-176 1-92 (130)
304 PF12692 Methyltransf_17: S-ad 95.8 0.031 6.8E-07 42.2 5.9 116 25-171 15-132 (160)
305 KOG1501 Arginine N-methyltrans 95.7 0.024 5.3E-07 50.2 5.7 59 44-107 68-128 (636)
306 PF05430 Methyltransf_30: S-ad 95.7 0.09 2E-06 38.9 7.9 82 98-202 34-115 (124)
307 PF02636 Methyltransf_28: Puta 95.6 0.014 3.1E-07 48.7 4.1 66 27-92 2-72 (252)
308 COG1063 Tdh Threonine dehydrog 95.6 0.11 2.4E-06 45.6 9.7 105 42-178 168-274 (350)
309 KOG2352 Predicted spermine/spe 95.6 0.046 9.9E-07 49.2 7.1 132 42-189 295-434 (482)
310 PF07757 AdoMet_MTase: Predict 95.5 0.021 4.5E-07 40.7 3.8 35 41-81 57-91 (112)
311 cd08283 FDH_like_1 Glutathione 95.4 0.12 2.6E-06 45.8 9.5 119 41-174 183-307 (386)
312 KOG1099 SAM-dependent methyltr 95.4 0.13 2.9E-06 41.8 8.5 125 42-188 41-178 (294)
313 PF07279 DUF1442: Protein of u 95.3 0.6 1.3E-05 37.7 12.0 79 42-122 41-122 (218)
314 PF05711 TylF: Macrocin-O-meth 95.3 0.27 5.9E-06 40.9 10.4 129 41-194 73-234 (248)
315 PF03492 Methyltransf_7: SAM d 95.0 0.35 7.7E-06 42.1 10.7 135 41-177 15-187 (334)
316 PF02254 TrkA_N: TrkA-N domain 94.9 0.81 1.8E-05 32.9 11.1 107 51-193 4-112 (116)
317 PTZ00357 methyltransferase; Pr 94.8 0.11 2.4E-06 48.9 7.1 106 44-168 702-830 (1072)
318 KOG1227 Putative methyltransfe 94.3 0.02 4.4E-07 48.2 1.3 73 42-121 194-268 (351)
319 cd08254 hydroxyacyl_CoA_DH 6-h 94.2 0.49 1.1E-05 40.6 10.0 96 41-173 164-263 (338)
320 KOG0024 Sorbitol dehydrogenase 94.1 0.39 8.5E-06 41.2 8.6 99 41-174 168-274 (354)
321 PF02153 PDH: Prephenate dehyd 94.0 1.4 3.1E-05 36.8 11.9 103 62-202 3-108 (258)
322 KOG2360 Proliferation-associat 93.8 0.17 3.6E-06 44.3 5.9 84 40-126 211-295 (413)
323 COG2961 ComJ Protein involved 93.6 1.2 2.5E-05 36.9 10.1 117 47-191 93-215 (279)
324 PF03686 UPF0146: Uncharacteri 93.6 0.45 9.8E-06 35.1 7.0 67 42-124 13-80 (127)
325 PRK09424 pntA NAD(P) transhydr 93.5 0.85 1.8E-05 42.1 10.4 43 41-88 163-206 (509)
326 PRK09880 L-idonate 5-dehydroge 93.4 0.97 2.1E-05 39.3 10.3 96 41-174 168-267 (343)
327 PLN02668 indole-3-acetate carb 93.3 1.1 2.4E-05 39.8 10.3 133 42-176 63-240 (386)
328 KOG2920 Predicted methyltransf 93.3 0.13 2.7E-06 43.3 4.2 70 10-84 80-153 (282)
329 PRK15001 SAM-dependent 23S rib 93.2 2.6 5.6E-05 37.4 12.5 98 45-176 47-145 (378)
330 cd08281 liver_ADH_like1 Zinc-d 93.1 0.97 2.1E-05 39.8 9.9 98 41-173 190-290 (371)
331 cd08237 ribitol-5-phosphate_DH 92.9 1.4 3.1E-05 38.3 10.6 96 41-174 162-257 (341)
332 COG0863 DNA modification methy 92.8 0.73 1.6E-05 39.2 8.5 68 16-93 200-267 (302)
333 KOG3350 Uncharacterized conser 92.7 3.5 7.7E-05 32.3 11.0 98 41-173 72-172 (217)
334 COG4889 Predicted helicase [Ge 92.4 0.7 1.5E-05 44.9 8.3 155 16-175 815-1024(1518)
335 COG0863 DNA modification methy 92.4 0.55 1.2E-05 39.9 7.3 102 98-200 18-127 (302)
336 PF03721 UDPG_MGDP_dh_N: UDP-g 92.4 0.82 1.8E-05 36.3 7.6 116 52-190 7-139 (185)
337 COG4627 Uncharacterized protei 92.3 0.039 8.5E-07 42.1 0.0 25 153-177 66-90 (185)
338 cd08293 PTGR2 Prostaglandin re 91.8 3.6 7.8E-05 35.5 11.8 94 43-173 155-254 (345)
339 PLN03154 putative allyl alcoho 91.8 1.3 2.7E-05 38.8 8.9 96 41-173 157-258 (348)
340 PRK08643 acetoin reductase; Va 91.6 5.9 0.00013 32.5 12.4 81 43-126 2-90 (256)
341 cd08239 THR_DH_like L-threonin 91.5 4 8.7E-05 35.2 11.7 98 41-174 162-263 (339)
342 PRK07454 short chain dehydroge 91.4 5.8 0.00012 32.2 12.0 82 42-126 5-94 (241)
343 cd05188 MDR Medium chain reduc 91.3 2.7 5.8E-05 34.5 10.1 98 41-174 133-233 (271)
344 PF04378 RsmJ: Ribosomal RNA s 91.3 1.8 3.9E-05 35.9 8.7 118 47-192 62-185 (245)
345 PRK06113 7-alpha-hydroxysteroi 91.0 7.3 0.00016 32.0 12.4 81 42-125 10-98 (255)
346 PRK05786 fabG 3-ketoacyl-(acyl 91.0 6.2 0.00013 31.9 11.8 125 42-174 4-136 (238)
347 TIGR03451 mycoS_dep_FDH mycoth 90.8 3 6.5E-05 36.4 10.4 98 41-174 175-277 (358)
348 COG0287 TyrA Prephenate dehydr 90.8 5.9 0.00013 33.6 11.6 111 44-192 4-114 (279)
349 PF02086 MethyltransfD12: D12 90.8 0.55 1.2E-05 39.0 5.4 53 26-87 7-59 (260)
350 PRK08415 enoyl-(acyl carrier p 90.8 6.7 0.00015 32.9 12.0 82 42-126 4-94 (274)
351 PLN02494 adenosylhomocysteinas 90.7 5 0.00011 36.7 11.6 90 42-174 253-342 (477)
352 TIGR03366 HpnZ_proposed putati 90.7 3.2 6.8E-05 34.9 10.0 97 41-173 119-218 (280)
353 COG0677 WecC UDP-N-acetyl-D-ma 90.5 1.2 2.7E-05 39.3 7.3 123 52-192 16-150 (436)
354 PTZ00075 Adenosylhomocysteinas 90.4 5.7 0.00012 36.3 11.6 104 41-190 252-356 (476)
355 PRK08265 short chain dehydroge 90.2 6.3 0.00014 32.6 11.3 79 42-126 5-91 (261)
356 TIGR01202 bchC 2-desacetyl-2-h 90.2 2.1 4.5E-05 36.6 8.6 88 42-174 144-232 (308)
357 KOG2539 Mitochondrial/chloropl 90.1 1.1 2.3E-05 40.4 6.7 138 26-183 183-325 (491)
358 PRK06128 oxidoreductase; Provi 89.9 3.8 8.3E-05 34.8 10.0 126 42-173 54-191 (300)
359 PLN02740 Alcohol dehydrogenase 89.8 1.9 4.1E-05 38.1 8.3 97 41-173 197-300 (381)
360 cd08230 glucose_DH Glucose deh 89.7 3.6 7.9E-05 35.8 9.9 96 41-174 171-270 (355)
361 PF13561 adh_short_C2: Enoyl-( 89.7 2 4.3E-05 35.2 7.8 118 50-174 1-134 (241)
362 cd08294 leukotriene_B4_DH_like 89.6 4.6 0.0001 34.4 10.3 95 41-173 142-241 (329)
363 PRK05867 short chain dehydroge 89.6 8.3 0.00018 31.6 11.5 82 42-126 8-97 (253)
364 PF05050 Methyltransf_21: Meth 89.5 0.94 2E-05 34.5 5.4 45 48-94 1-49 (167)
365 TIGR02825 B4_12hDH leukotriene 89.5 5.6 0.00012 34.1 10.8 95 41-173 137-237 (325)
366 COG1255 Uncharacterized protei 88.9 3.9 8.5E-05 29.7 7.5 65 42-122 13-77 (129)
367 PLN02827 Alcohol dehydrogenase 88.9 2.7 5.9E-05 37.2 8.5 97 41-173 192-295 (378)
368 cd08238 sorbose_phosphate_red 88.8 5.9 0.00013 35.4 10.7 47 41-89 174-222 (410)
369 KOG4174 Uncharacterized conser 88.7 3.7 8E-05 34.1 8.3 143 42-193 56-212 (282)
370 PRK07806 short chain dehydroge 88.6 12 0.00026 30.5 12.0 121 42-173 5-134 (248)
371 PRK06701 short chain dehydroge 88.4 7.2 0.00016 33.0 10.6 126 42-173 45-181 (290)
372 cd08295 double_bond_reductase_ 88.4 4.2 9.1E-05 35.1 9.3 96 41-173 150-251 (338)
373 PRK08594 enoyl-(acyl carrier p 88.4 12 0.00027 30.9 11.8 81 42-126 6-98 (257)
374 PRK07533 enoyl-(acyl carrier p 88.3 12 0.00025 31.0 11.6 82 42-126 9-99 (258)
375 TIGR00853 pts-lac PTS system, 88.2 4.7 0.0001 28.2 7.7 56 44-124 4-59 (95)
376 PF06859 Bin3: Bicoid-interact 88.2 0.23 5E-06 35.6 1.0 22 151-172 22-43 (110)
377 PRK06035 3-hydroxyacyl-CoA deh 88.2 9.3 0.0002 32.4 11.1 44 44-91 4-47 (291)
378 KOG0023 Alcohol dehydrogenase, 88.2 1.2 2.6E-05 38.3 5.4 99 41-176 180-282 (360)
379 PRK05854 short chain dehydroge 88.1 15 0.00032 31.5 12.4 82 42-126 13-104 (313)
380 PLN02253 xanthoxin dehydrogena 88.1 9.3 0.0002 31.9 11.0 80 42-125 17-104 (280)
381 TIGR00027 mthyl_TIGR00027 meth 88.0 12 0.00027 31.3 11.5 108 42-174 81-198 (260)
382 PRK07109 short chain dehydroge 88.0 16 0.00034 31.8 12.6 81 42-125 7-95 (334)
383 KOG2651 rRNA adenine N-6-methy 88.0 1.6 3.4E-05 38.5 6.0 42 42-88 153-194 (476)
384 PRK07102 short chain dehydroge 87.9 13 0.00029 30.2 11.6 79 44-125 2-86 (243)
385 PRK10669 putative cation:proto 87.8 9.9 0.00021 35.6 11.9 63 51-121 423-487 (558)
386 PRK05476 S-adenosyl-L-homocyst 87.8 19 0.00041 32.6 13.1 89 42-174 211-300 (425)
387 PF02737 3HCDH_N: 3-hydroxyacy 87.8 12 0.00025 29.5 12.2 135 46-216 2-154 (180)
388 PRK07530 3-hydroxybutyryl-CoA 87.7 11 0.00024 31.9 11.3 98 44-173 5-119 (292)
389 TIGR03201 dearomat_had 6-hydro 87.7 3.4 7.5E-05 35.9 8.4 44 41-88 165-208 (349)
390 PRK07985 oxidoreductase; Provi 87.7 6 0.00013 33.6 9.6 81 42-125 48-138 (294)
391 PF03269 DUF268: Caenorhabditi 87.7 4.9 0.00011 31.1 7.9 135 43-199 2-146 (177)
392 TIGR02822 adh_fam_2 zinc-bindi 87.6 7.8 0.00017 33.5 10.4 92 41-174 164-255 (329)
393 PF05063 MT-A70: MT-A70 ; Int 87.6 3.5 7.6E-05 32.3 7.5 71 116-194 1-73 (176)
394 PRK03659 glutathione-regulated 87.4 7.6 0.00017 36.8 10.9 64 51-122 406-471 (601)
395 cd05278 FDH_like Formaldehyde 87.3 7.5 0.00016 33.5 10.2 96 41-173 166-267 (347)
396 PRK06603 enoyl-(acyl carrier p 86.9 13 0.00028 30.8 11.1 82 42-126 7-97 (260)
397 cd00401 AdoHcyase S-adenosyl-L 86.8 7.1 0.00015 35.2 9.8 90 41-174 200-290 (413)
398 cd08232 idonate-5-DH L-idonate 86.7 9 0.0002 32.9 10.4 93 42-173 165-262 (339)
399 COG0604 Qor NADPH:quinone redu 86.7 8.6 0.00019 33.4 10.1 99 41-176 141-244 (326)
400 PRK09072 short chain dehydroge 86.7 15 0.00033 30.3 11.4 81 42-126 4-91 (263)
401 PRK06079 enoyl-(acyl carrier p 86.6 17 0.00036 29.9 11.6 80 42-126 6-94 (252)
402 PRK09260 3-hydroxybutyryl-CoA 86.5 8.4 0.00018 32.7 9.9 110 45-186 3-129 (288)
403 PRK08267 short chain dehydroge 86.5 13 0.00028 30.6 10.8 78 44-126 2-88 (260)
404 TIGR02818 adh_III_F_hyde S-(hy 86.4 4.9 0.00011 35.3 8.6 99 41-174 184-288 (368)
405 PRK06940 short chain dehydroge 86.4 14 0.00029 31.0 11.0 78 44-126 3-87 (275)
406 PRK09590 celB cellobiose phosp 86.3 6.4 0.00014 28.1 7.6 38 86-123 21-58 (104)
407 PRK12481 2-deoxy-D-gluconate 3 86.3 14 0.00031 30.3 11.0 80 42-126 7-94 (251)
408 PRK11064 wecC UDP-N-acetyl-D-m 86.2 7.7 0.00017 34.9 9.8 121 45-189 5-136 (415)
409 PF03446 NAD_binding_2: NAD bi 86.0 8.7 0.00019 29.5 8.9 104 52-192 8-114 (163)
410 cd08300 alcohol_DH_class_III c 85.7 13 0.00029 32.5 11.1 98 41-174 185-289 (368)
411 TIGR02415 23BDH acetoin reduct 85.7 18 0.00039 29.5 12.2 79 45-126 2-88 (254)
412 PRK08159 enoyl-(acyl carrier p 85.6 15 0.00033 30.7 11.0 82 42-126 9-99 (272)
413 PRK10309 galactitol-1-phosphat 85.5 12 0.00025 32.5 10.5 97 41-173 159-260 (347)
414 PRK06505 enoyl-(acyl carrier p 85.5 19 0.00041 30.1 11.4 82 42-126 6-96 (271)
415 PRK07889 enoyl-(acyl carrier p 85.1 16 0.00036 30.1 10.8 80 42-126 6-96 (256)
416 cd08233 butanediol_DH_like (2R 85.0 12 0.00026 32.4 10.4 99 41-174 171-273 (351)
417 PRK07502 cyclohexadienyl dehyd 85.0 11 0.00024 32.3 9.9 92 44-171 7-98 (307)
418 cd08261 Zn_ADH7 Alcohol dehydr 84.9 11 0.00023 32.4 9.9 96 41-173 158-258 (337)
419 PRK07066 3-hydroxybutyryl-CoA 84.7 25 0.00055 30.5 11.9 139 44-217 8-160 (321)
420 PRK05872 short chain dehydroge 84.6 20 0.00043 30.4 11.3 81 42-126 8-96 (296)
421 PRK06196 oxidoreductase; Provi 84.5 18 0.00039 30.9 11.1 78 42-126 25-110 (315)
422 PLN02353 probable UDP-glucose 84.5 13 0.00028 34.1 10.5 125 46-188 4-143 (473)
423 PRK09291 short chain dehydroge 84.3 10 0.00022 31.0 9.2 79 44-125 3-83 (257)
424 PRK09242 tropinone reductase; 84.2 21 0.00047 29.2 12.0 81 42-125 8-98 (257)
425 PRK08293 3-hydroxybutyryl-CoA 84.2 17 0.00036 30.8 10.6 97 44-171 4-118 (287)
426 PRK12743 oxidoreductase; Provi 84.1 22 0.00047 29.2 11.6 81 43-126 2-91 (256)
427 PRK08217 fabG 3-ketoacyl-(acyl 84.1 12 0.00025 30.5 9.4 81 42-125 4-92 (253)
428 PRK07774 short chain dehydroge 84.0 21 0.00046 28.9 11.9 82 42-126 5-94 (250)
429 PRK05866 short chain dehydroge 84.0 2.9 6.3E-05 35.5 5.9 118 1-125 1-127 (293)
430 COG1748 LYS9 Saccharopine dehy 84.0 7.1 0.00015 34.8 8.3 76 44-126 2-79 (389)
431 PRK06197 short chain dehydroge 83.9 25 0.00055 29.8 12.6 83 41-126 14-106 (306)
432 PRK12826 3-ketoacyl-(acyl-carr 83.9 13 0.00029 30.0 9.7 83 42-127 5-95 (251)
433 cd05285 sorbitol_DH Sorbitol d 83.8 13 0.00029 32.0 10.0 96 41-173 161-265 (343)
434 cd08234 threonine_DH_like L-th 83.6 12 0.00026 32.0 9.6 97 41-174 158-258 (334)
435 PRK08945 putative oxoacyl-(acy 83.6 11 0.00024 30.7 9.1 81 42-125 11-102 (247)
436 PF02558 ApbA: Ketopantoate re 83.6 2 4.4E-05 32.4 4.3 105 51-186 4-114 (151)
437 PRK05808 3-hydroxybutyryl-CoA 83.5 11 0.00023 31.9 9.1 109 45-186 5-130 (282)
438 cd08255 2-desacetyl-2-hydroxye 83.5 12 0.00027 31.0 9.4 94 41-174 96-191 (277)
439 cd08285 NADP_ADH NADP(H)-depen 83.3 16 0.00034 31.6 10.4 97 41-173 165-266 (351)
440 PF06460 NSP13: Coronavirus NS 83.2 26 0.00057 29.4 13.8 158 27-213 44-209 (299)
441 PRK07370 enoyl-(acyl carrier p 83.1 16 0.00036 30.1 10.0 83 42-126 5-98 (258)
442 PRK08324 short chain dehydroge 82.9 17 0.00037 35.0 11.1 81 42-126 421-509 (681)
443 TIGR01963 PHB_DH 3-hydroxybuty 82.9 12 0.00026 30.5 9.0 79 44-125 2-88 (255)
444 PRK07523 gluconate 5-dehydroge 82.6 7.7 0.00017 31.8 7.8 82 42-126 9-98 (255)
445 COG1062 AdhC Zn-dependent alco 82.6 6.9 0.00015 34.1 7.4 99 41-175 184-287 (366)
446 KOG3924 Putative protein methy 82.5 6.9 0.00015 34.7 7.5 123 25-173 175-308 (419)
447 cd08301 alcohol_DH_plants Plan 82.3 9.1 0.0002 33.5 8.5 98 41-174 186-290 (369)
448 cd08236 sugar_DH NAD(P)-depend 82.3 9 0.0002 33.0 8.4 96 41-173 158-258 (343)
449 PRK06057 short chain dehydroge 82.3 18 0.0004 29.6 10.0 77 42-126 6-90 (255)
450 PLN02545 3-hydroxybutyryl-CoA 82.3 25 0.00053 29.9 10.9 110 44-186 5-131 (295)
451 PRK08628 short chain dehydroge 82.3 24 0.00052 28.9 10.6 80 42-125 6-93 (258)
452 PF08468 MTS_N: Methyltransfer 82.0 3.7 7.9E-05 31.6 5.1 55 114-190 68-122 (155)
453 PRK07231 fabG 3-ketoacyl-(acyl 81.9 26 0.00056 28.4 11.6 80 42-125 4-91 (251)
454 PRK08306 dipicolinate synthase 81.7 18 0.00039 31.0 9.8 41 42-86 151-191 (296)
455 KOG0022 Alcohol dehydrogenase, 81.6 7 0.00015 33.7 7.0 99 42-174 192-295 (375)
456 PRK06124 gluconate 5-dehydroge 81.6 9.6 0.00021 31.2 8.0 81 42-125 10-98 (256)
457 cd08245 CAD Cinnamyl alcohol d 81.5 21 0.00046 30.4 10.4 95 41-173 161-256 (330)
458 PRK08213 gluconate 5-dehydroge 81.4 9.4 0.0002 31.4 7.9 81 42-125 11-99 (259)
459 PRK03562 glutathione-regulated 81.4 12 0.00026 35.7 9.3 68 44-121 401-470 (621)
460 cd08277 liver_alcohol_DH_like 81.4 11 0.00025 32.9 8.8 98 41-174 183-287 (365)
461 PF02826 2-Hacid_dh_C: D-isome 81.3 5.5 0.00012 31.2 6.1 109 41-188 34-143 (178)
462 PRK08703 short chain dehydroge 81.1 11 0.00024 30.5 8.2 80 42-124 5-96 (239)
463 PRK08589 short chain dehydroge 81.1 30 0.00066 28.7 12.0 81 42-126 5-93 (272)
464 COG4121 Uncharacterized conser 81.1 25 0.00054 29.4 10.0 133 42-196 58-227 (252)
465 PRK15057 UDP-glucose 6-dehydro 81.0 40 0.00088 30.1 12.8 34 52-88 7-40 (388)
466 cd08291 ETR_like_1 2-enoyl thi 81.0 20 0.00042 30.7 10.0 98 42-174 142-243 (324)
467 PRK07984 enoyl-(acyl carrier p 80.8 31 0.00068 28.6 11.9 82 42-126 5-95 (262)
468 PRK06139 short chain dehydroge 80.7 13 0.00028 32.3 8.7 81 42-125 6-94 (330)
469 COG1743 Adenine-specific DNA m 80.6 1.9 4.1E-05 41.3 3.6 44 42-91 90-133 (875)
470 PF00106 adh_short: short chai 80.4 22 0.00048 26.7 10.0 81 45-127 2-92 (167)
471 PLN02780 ketoreductase/ oxidor 80.0 38 0.00083 29.2 12.2 81 42-125 52-142 (320)
472 PRK07819 3-hydroxybutyryl-CoA 79.9 37 0.00079 28.9 12.9 97 44-172 6-120 (286)
473 PRK05717 oxidoreductase; Valid 79.9 32 0.00069 28.1 11.1 80 41-126 8-95 (255)
474 PRK08340 glucose-1-dehydrogena 79.5 33 0.00072 28.1 12.5 77 45-125 2-86 (259)
475 COG3510 CmcI Cephalosporin hyd 79.3 24 0.00052 28.3 8.8 109 41-173 68-180 (237)
476 cd08278 benzyl_alcohol_DH Benz 79.3 22 0.00048 31.0 9.9 98 41-174 185-286 (365)
477 PRK08278 short chain dehydroge 79.2 34 0.00073 28.5 10.6 82 42-126 5-101 (273)
478 PRK06522 2-dehydropantoate 2-r 79.1 24 0.00052 29.8 9.9 108 45-186 2-113 (304)
479 COG1743 Adenine-specific DNA m 79.1 9.2 0.0002 36.9 7.5 47 151-197 566-615 (875)
480 PRK06172 short chain dehydroge 79.0 13 0.00027 30.5 7.9 82 42-126 6-95 (253)
481 cd08240 6_hydroxyhexanoate_dh_ 78.9 27 0.00059 30.1 10.3 96 42-173 175-274 (350)
482 cd05281 TDH Threonine dehydrog 78.7 29 0.00063 29.8 10.4 97 41-173 162-262 (341)
483 PRK06949 short chain dehydroge 78.3 14 0.00031 30.2 8.0 82 41-125 7-96 (258)
484 PRK07814 short chain dehydroge 78.1 14 0.0003 30.5 8.0 80 42-124 9-96 (263)
485 cd05292 LDH_2 A subgroup of L- 78.0 28 0.0006 29.9 9.9 113 45-174 2-117 (308)
486 PF01210 NAD_Gly3P_dh_N: NAD-d 77.9 17 0.00038 27.7 7.8 97 46-176 2-106 (157)
487 PRK08177 short chain dehydroge 77.9 15 0.00033 29.5 7.9 75 44-126 2-82 (225)
488 KOG1098 Putative SAM-dependent 77.8 3.7 8E-05 38.5 4.5 107 41-170 43-155 (780)
489 COG0338 Dam Site-specific DNA 77.8 30 0.00065 29.3 9.6 82 97-188 157-240 (274)
490 PRK09496 trkA potassium transp 77.8 30 0.00065 31.2 10.5 74 42-123 230-305 (453)
491 PRK09489 rsmC 16S ribosomal RN 77.8 9.4 0.0002 33.5 6.9 55 114-190 75-129 (342)
492 TIGR01832 kduD 2-deoxy-D-gluco 77.6 36 0.00079 27.5 11.5 80 42-126 4-91 (248)
493 PF03514 GRAS: GRAS domain fam 77.5 52 0.0011 29.2 13.2 61 41-101 109-180 (374)
494 PF11899 DUF3419: Protein of u 77.3 4.3 9.3E-05 36.1 4.7 57 98-173 278-334 (380)
495 TIGR00692 tdh L-threonine 3-de 77.1 33 0.00072 29.5 10.3 98 41-173 160-261 (340)
496 PRK05993 short chain dehydroge 77.1 42 0.0009 28.0 11.1 75 43-126 4-87 (277)
497 PRK12746 short chain dehydroge 77.1 38 0.00083 27.5 11.0 81 42-125 5-100 (254)
498 KOG1209 1-Acyl dihydroxyaceton 76.2 5.3 0.00012 32.5 4.5 75 42-123 6-89 (289)
499 COG1052 LdhA Lactate dehydroge 76.1 7.4 0.00016 33.8 5.8 100 52-189 153-253 (324)
500 PRK07904 short chain dehydroge 75.7 27 0.00058 28.8 9.0 84 41-126 6-98 (253)
No 1
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.5e-27 Score=179.16 Aligned_cols=194 Identities=52% Similarity=0.891 Sum_probs=179.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
..++|.|..||+.+.|.+.....++....+..++|||||+|.++..+++.+. |++...++|+||.+.+...+.+..|
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhc
Confidence 4499999999999999998888777666789999999999999988888764 7889999999999999999999999
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...++++.|+.+.+.. ++.|+++.||||.+.+..+....+...+|.||.+|+.+.+.++.++-.+|.|.|.++++.
T Consensus 92 ~~~~~~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 92 RVHIDVVRTDLLSGLRN---ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCccceeehhHHhhhcc---CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 98889999999888765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 174 LTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+...++.++++..||.....+.+....+...++++.+
T Consensus 169 ~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 169 LRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred hhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 9888999999999999999999999999999999999876
No 2
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.2e-27 Score=197.68 Aligned_cols=187 Identities=26% Similarity=0.379 Sum_probs=153.5
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|+||++|+.+++.++..... ... +|||+|||||++++.++.. .|.+.|+|+|+|+.+++.|++|
T Consensus 82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 82 RFKVDEGVLIPRPDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eeeeCCCceecCCchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998744332 122 8999999999999988888 6788999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++.. .++.+|+++... ++||+|++||||.+... +++...++..++++|.+|.+++..++..+.++|+
T Consensus 154 a~~~~l~~~~~~~~dlf~~~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 154 AERNGLVRVLVVQSDLFEPLR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHcCCccEEEEeeecccccC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 99999733 555557666533 48999999999999872 2345678999999888999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcC-CcEEEEEecCCCCccEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKG-YAARIVVQRSTEEENLHII 209 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~l~ 209 (256)
|||.+++ ..+.++...+.+++.+.+ +.............++...
T Consensus 230 ~~g~l~l-e~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 230 PGGVLIL-EIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred CCcEEEE-EECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 9999888 566788899999999999 5555566666666555443
No 3
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.95 E-value=4e-26 Score=198.81 Aligned_cols=189 Identities=23% Similarity=0.280 Sum_probs=160.3
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.|+++.||++|+.+++.+++.+. ++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH
Confidence 77999999999999999999988753 4579999999999999888876 57789999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..++.+.+++++|+.+...+ ..++||+|++||||...... +....++..++.++.+|...+..++..+.+.|+||
T Consensus 296 ~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 296 ADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred HHcCCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 98887668999998664221 13579999999999876542 23356888999999999999999999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEE
Q 025207 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 210 (256)
|.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.+..
T Consensus 375 G~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 375 GFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred cEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 99887 45677788999999999998888888888888876643
No 4
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.95 E-value=5.1e-26 Score=206.26 Aligned_cols=195 Identities=23% Similarity=0.296 Sum_probs=163.1
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhccc------------------c---cCCCCEEEEecccccHHHHHHHHHhcccC
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINL------------------V---EHHPVLCMEVGCGSGYVITSLALMLGQEV 68 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~------------------~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~ 68 (256)
.|.+.|+|++||++|+.+++++++.+... . ..++.+|||+|||+|++++.++.. .
T Consensus 85 ~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~----~ 160 (506)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE----L 160 (506)
T ss_pred EEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH----C
Confidence 37899999999999999999998765310 0 113578999999999999988876 5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhh
Q 025207 69 PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASA 141 (256)
Q Consensus 69 ~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~ 141 (256)
|+++++|+|+|+.+++.|++|+..+++.. .++.+|+.+... .++||+|++||||...... ++...++..+
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~A 237 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIA 237 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHH
Confidence 67899999999999999999999888743 788899865432 3589999999999986653 4456788999
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
+.++.+|+..+..++..+.++|+|||.+++ ..+..+...+.+.+.+.||....+.....+.++++++...
T Consensus 238 L~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 238 LFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI 307 (506)
T ss_pred hcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence 999999999999999999999999999988 4667788899999999999888888888888887766544
No 5
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.94 E-value=9e-26 Score=183.81 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=156.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+-=.+++|.++.|+.+|+.++... ..++|||+|||+|.+++.+++. .++++|+|+|+++++++.|++|+
T Consensus 20 I~q~~~~~~~~~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r----~~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 20 IIQDRCGFRYGTDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQR----TEKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred EEeCCCccccccHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhcc----CCCCcEEEEEeCHHHHHHHHHHH
Confidence 556788999999999988876554 3799999999999988777665 56789999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+.|++.. ++++.|+.+........+||+|+|||||+.........+....+.+.... .++.+++.+..+|||||.
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~---~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITL---DLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcC---CHHHHHHHHHHHccCCCE
Confidence 9998875 99999999987766556899999999999887762222222222222211 278999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcE---EEEEecCCCCccEEEEEEEecCcccc
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAA---RIVVQRSTEEENLHIIKFWRDFDIQM 219 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (256)
++++.+..+ ..++...+.+++|.. ..++++..+..+.++++++++++.++
T Consensus 166 l~~V~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l 218 (248)
T COG4123 166 LAFVHRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGKSGL 218 (248)
T ss_pred EEEEecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCCCCc
Confidence 999887554 678899999988875 45778889999999999999988544
No 6
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.94 E-value=1.2e-24 Score=184.74 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=156.4
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.++++.||++++.+++.+++.+.. ..+..+|||+|||+|.+++.++.. .++++++|+|+++++++.|++|
T Consensus 84 ~f~v~~~vliPr~ete~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 84 EFFVNEHVLIPRPETEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EEEECCCCcCCCCccHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998876531 123379999999999999998887 5678999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. ..++.+|+.+... ..+||+|++||||...... ++...++..++.+|.+|+..+..++..+.++|
T Consensus 158 ~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHcCCCCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9998875 4899999876532 2479999999999876542 34457888999999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEEEEecCCCCccEEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMM-EKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
+|||++++. .+..+...+.+++. ..+|....+.....+.+++.+.
T Consensus 235 ~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 235 KPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred cCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 999999884 45666778888887 4678777777777777776653
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.93 E-value=1.4e-24 Score=180.77 Aligned_cols=179 Identities=27% Similarity=0.405 Sum_probs=147.5
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|.|+.+++.+++.++..+... ..+.+|||+|||+|.+++.++.. .++.+++|+|+|+.+++.|++|
T Consensus 56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 56 RIAVDPGVFVPRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred EEEECCCCcCCCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 37789999999999999999988765321 23468999999999999988876 5667999999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++. +++++|+.+.......++||+|++||||..... +++...++..++.+|.++.+.+..++..+.++|+
T Consensus 130 ~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~ 207 (251)
T TIGR03704 130 LADAGG--TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA 207 (251)
T ss_pred HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 988774 788899876543322467999999999986543 3445677788899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|||++++... ..+..++...+.+.||......
T Consensus 208 ~gG~l~l~~~-~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 208 PGGHLLVETS-ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred CCCEEEEEEC-cchHHHHHHHHHHCCCCceeeE
Confidence 9999999765 4567889999999999876654
No 8
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.93 E-value=9e-24 Score=167.74 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=146.3
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|.|+.++.++.+.+... ++.+|||+|||+|.+++.++.. .+ +++++|+++.+++.+++|+..++..
T Consensus 1 ~~~~~~d~~~l~~~l~~~-------~~~~vLdlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLREL-------KPDDVLEIGAGTGLVAIRLKGK----GK--CILTTDINPFAVKELRENAKLNNVG 67 (179)
T ss_pred CCCCCccHHHHHHHHHhc-------CCCeEEEeCCChhHHHHHHHhc----CC--EEEEEECCHHHHHHHHHHHHHcCCc
Confidence 589999997777665332 5678999999999998887765 33 8999999999999999999988876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+++.+|+.+.. .++||+|++||||++.+.......+...++.++..+...+..++.++.++|+|||+++++....
T Consensus 68 ~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 68 LDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred eEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 688888976642 3589999999999887665433344455666677777778999999999999999999988877
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 177 NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
....++...+++.||..+.+.......+..+++++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 77889999999999999999888888888877765
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.92 E-value=7.6e-24 Score=171.36 Aligned_cols=195 Identities=22% Similarity=0.292 Sum_probs=153.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...|+|++||++|+.+++++.+.+....--++..|||+|||+|++++.++..+ |+++++|+|.|+.++..|.+|+
T Consensus 117 l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L----~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 117 LVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL----PQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred EEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC----CCceEEEEeccHHHHHHHHHHH
Confidence 567899999999999999999998864322356689999999999998888774 5789999999999999999999
Q ss_pred HHcCCcc--eEE----EcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHH
Q 025207 91 EAHNVHA--DLI----NTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 91 ~~~~~~~--~~~----~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++++.. .++ ..|..... +...+++|++++||||....+ .++...++..++.||..|.+++..+..-+
T Consensus 193 qr~~l~g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 193 QRLKLSGRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred HHHhhcCceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 9998866 444 33433332 134689999999999998776 56788999999999999999999999999
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcC----CcEEEEEecCCCCccEEEEE
Q 025207 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKG----YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~l~~ 210 (256)
.++|+|||.+.+..........+.+.+.... +....++....+.++++.+.
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~ 326 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIH 326 (328)
T ss_pred HhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEE
Confidence 9999999999997765555555555544432 23344566666666765543
No 10
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.92 E-value=3.8e-23 Score=175.14 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=140.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.|+++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 92 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 92 FYVDERVLIPRSPIAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred EEECCCCccCCCchHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH
Confidence 779999999999998888877653211 134679999999999999998887 67789999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. ..++++|+.+..+ +++||+|++||||....... ....++..++.++..|...+..++..+.++|+
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred HHcCCCCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 999875 3889999876532 35799999999998765421 12467888899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++... .. ...+.+.+.+.+|.+
T Consensus 243 ~gG~l~~e~g-~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 243 ENGVLVVEVG-NS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCEEEEEEC-cC-HHHHHHHHHhCCCce
Confidence 9999998543 43 368888898888765
No 11
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.91 E-value=1e-22 Score=172.26 Aligned_cols=188 Identities=25% Similarity=0.411 Sum_probs=152.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++++|+++++.++++++.... ..++.+|||+|||+|.+++.++.. .+.+.++|+|+++.+++.|++|
T Consensus 79 ~~~~~~~~lipr~~te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 79 DFKVSPGVLIPRPETEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EEEECCCceeCCCCcHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 467889999999999999999885542 246789999999999999988887 5677999999999999999999
Q ss_pred HHHcC-CcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHN-VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~-~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+.... ....++.+|+.+... +++||+|++||||..... .++...++..++.++..+...+..+++.+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 87222 234888898865432 468999999999987543 334457888889999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
+|||++++. .+......+...+.+.||....+.....+..++.+
T Consensus 229 k~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 229 KPGGWLLLE-IGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred ccCCEEEEE-ECchHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 999999984 45566778899999999986666666666666554
No 12
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=1.8e-22 Score=168.54 Aligned_cols=186 Identities=27% Similarity=0.409 Sum_probs=151.8
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+.+.+.++.|++++..+++.+++.+. ..+.+|||+|||+|.+++.++.. .++++++|+|+++.+++.+++
T Consensus 58 ~~~~~~~~~~~p~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~ 129 (251)
T TIGR03534 58 LDFKVSPGVLIPRPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARK 129 (251)
T ss_pred eEEEECCCcccCCCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH
Confidence 3466789999999999999999888764 35579999999999999888876 567899999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
++..+++.. .++++|+.+.. ..++||+|++||||...... +....++..++.++..+...+..+++.+.++
T Consensus 130 ~~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~ 206 (251)
T TIGR03534 130 NAARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL 206 (251)
T ss_pred HHHHcCCCeEEEEECchhccC---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 999888764 89999987643 24789999999999875542 2233466777778888888889999999999
Q ss_pred cccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccE
Q 025207 163 LSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENL 206 (256)
Q Consensus 163 LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 206 (256)
|+|||++++.. +.....++.+.+.+.||....+.....+..++
T Consensus 207 L~~gG~~~~~~-~~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 207 LKPGGWLLLEI-GYDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred cccCCEEEEEE-CccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 99999999854 45667789999999999877776666655554
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.91 E-value=1.9e-22 Score=172.43 Aligned_cols=173 Identities=23% Similarity=0.322 Sum_probs=138.7
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|.|+++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.+++.|++|
T Consensus 103 ~f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 103 EFYVDERVLVPRSPIAELIEDGFAPWLE--DPPVTRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred EEEECCCCcCCCCchHHHHHHHHHHHhc--cCCCCEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHH
Confidence 3778999999999998888877653211 122379999999999999888876 6788999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. .+++++|+.+..+ +++||+|++||||....... ....++..++.++.+|...+..++..+.++|
T Consensus 177 ~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L 253 (307)
T PRK11805 177 IERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL 253 (307)
T ss_pred HHHhCCCCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc
Confidence 9998874 4899999876542 35899999999998754421 1246788888899999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
+|||++++.. ... ...+.+.+.+.++.+
T Consensus 254 ~pgG~l~~E~-g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 254 TEDGVLVVEV-GNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCCEEEEEE-CcC-HHHHHHHHhhCCCEE
Confidence 9999999854 333 456778887777654
No 14
>PRK14967 putative methyltransferase; Provisional
Probab=99.90 E-value=5.2e-22 Score=162.99 Aligned_cols=178 Identities=31% Similarity=0.418 Sum_probs=143.1
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+...+++|.|..++..+++.+...- ..++.+|||+|||+|.+++.+++. . ..+++++|+++.+++.+++
T Consensus 7 ~~~~~~~g~~~p~~ds~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 7 DALLRAPGVYRPQEDTQLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL 77 (223)
T ss_pred ceeecCCCCcCCCCcHHHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH
Confidence 347899999999999999888776532 146789999999999998887764 2 2489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++.+..++.+|+.+.. .+++||+|++||||............+...|..+..+...+..++..+.++||+||+
T Consensus 78 n~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 78 NALLAGVDVDVRRGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred HHHHhCCeeEEEECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 99988876688889987643 246899999999998776654444556666777777777888999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++........+....+++.++.......
T Consensus 155 l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred EEEEEecccCHHHHHHHHHHCCCCeEEEEe
Confidence 999777666677888888888887655443
No 15
>PLN02672 methionine S-methyltransferase
Probab=99.89 E-value=3.6e-22 Score=191.43 Aligned_cols=182 Identities=19% Similarity=0.282 Sum_probs=144.2
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|+||++|+.+++. +...... ..++.+|||+|||+|++++.+++. ++.++++|+|+|+.+++.|++|
T Consensus 88 ~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 88 TMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 488999999999999999999 4432110 013579999999999999998887 6667999999999999999999
Q ss_pred HHHcCC-----------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----cccccc---------c
Q 025207 90 LEAHNV-----------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREG---------I 138 (256)
Q Consensus 90 ~~~~~~-----------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~---------~ 138 (256)
+..|++ ..+++++|+.+.... ...+||+||+||||...++. ++...+ +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 998753 138899998876532 12369999999999987753 223222 3
Q ss_pred hhhhcC---CCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH-HHHHHcCCcEEEEEec
Q 025207 139 ASAWAG---GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC-LQMMEKGYAARIVVQR 199 (256)
Q Consensus 139 ~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ 199 (256)
..++.+ +.+|+..+..++..+.++|+|||++++ ..+.++...+. +++++.||....++.+
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 456655 589999999999999999999999998 56677778888 6999999988777654
No 16
>PRK14968 putative methyltransferase; Provisional
Probab=99.89 E-value=5.4e-21 Score=152.63 Aligned_cols=182 Identities=31% Similarity=0.540 Sum_probs=141.2
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
-++.|+|+.++..+++.+.. .++++|||+|||+|.++..++.. +.+++|+|+++++++.+++++..+
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~ 68 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLN 68 (188)
T ss_pred CCcccCcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHc
Confidence 46889999998888887654 26789999999999998777764 468999999999999999999888
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. ..++.+|+.+... +.+||+|++||||...........+....+..+..+...+..+++++.++|+|||.++
T Consensus 69 ~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 69 NIRNNGVEVIRSDLFEPFR---GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCCCcceEEEecccccccc---ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 765 4678888766432 3589999999999875543322233344555566666778899999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
++.+.......+..++.+.||+...+.......+.+.++..
T Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T PRK14968 146 LLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLEL 186 (188)
T ss_pred EEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEE
Confidence 88777666788999999999987776666555555555544
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.88 E-value=1.9e-21 Score=152.96 Aligned_cols=140 Identities=28% Similarity=0.519 Sum_probs=110.6
Q ss_pred eeccCCccccCC---chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCD---DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~---~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+-.+|++|.|.. .+.+|++.+... +..+|||+|||+|.+++.+++. .+..+|+++|+++.+++.++
T Consensus 4 ~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 4 FITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHH
T ss_pred EEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHH
Confidence 568899998553 266777766664 5789999999999999888887 77778999999999999999
Q ss_pred HHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 88 KTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..+++. .+++..|+.+... +++||+|++|||+..- ...+......++..+.++|+||
T Consensus 73 ~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP~~~~----------------~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 73 RNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPPFHAG----------------GDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp HHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---SBTT----------------SHCHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCcccccccccccccccc---ccceeEEEEccchhcc----------------cccchhhHHHHHHHHHHhccCC
Confidence 999999988 5899999877644 4799999999996422 2234567899999999999999
Q ss_pred eEEEEEEeCCCCHH
Q 025207 167 GWLYLVTLTANDPS 180 (256)
Q Consensus 167 G~l~~~~~~~~~~~ 180 (256)
|.++++........
T Consensus 134 G~l~lv~~~~~~~~ 147 (170)
T PF05175_consen 134 GRLFLVINSHLGYE 147 (170)
T ss_dssp EEEEEEEETTSCHH
T ss_pred CEEEEEeecCCChH
Confidence 99988776544333
No 18
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.83 E-value=7.8e-19 Score=153.06 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=119.8
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+..+|++|..... ++++.+ .++ ...+.+|||+|||+|.+++.+++. +|+++|+++|+|+.+++.|+
T Consensus 201 ~~~~~gVFs~~~LD~GtrllL~----~lp---~~~~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 201 IHNHANVFSRTGLDIGARFFMQ----HLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred EEecCCccCCCCcChHHHHHHH----hCC---cccCCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 6678999988632 555444 332 123579999999999999888887 78899999999999999999
Q ss_pred HHHHHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 88 KTLEAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 88 ~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+|++.|+.. .+++..|+.+.. .+++||+|+|||||+..... .......++..+.++|
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~---~~~~fDlIlsNPPfh~~~~~----------------~~~ia~~l~~~a~~~L 330 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHAL----------------TDNVAWEMFHHARRCL 330 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC---CCCCEEEEEECcCcccCccC----------------CHHHHHHHHHHHHHhc
Confidence 999988743 277788876543 23589999999999743211 1123567899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+|||.++++.... ......+++. |... .......++.++++.|.+
T Consensus 331 kpGG~L~iV~nr~---l~y~~~L~~~-fg~~---~~va~~~kf~vl~a~k~~ 375 (378)
T PRK15001 331 KINGELYIVANRH---LDYFHKLKKI-FGNC---TTIATNNKFVVLKAVKLG 375 (378)
T ss_pred ccCCEEEEEEecC---cCHHHHHHHH-cCCc---eEEccCCCEEEEEEEeCC
Confidence 9999999986322 2233445443 2221 223556677888888743
No 19
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.6e-19 Score=145.83 Aligned_cols=165 Identities=21% Similarity=0.330 Sum_probs=119.7
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|..+|++|.-... |++|++.+.. ..+.+|||+|||.|.+++.+++. +|+..++.+|+|..+++.++
T Consensus 131 ~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 131 FKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred EEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHH
Confidence 6678888876543 5555554333 34559999999999999999888 88999999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..|+.+. .+...|..+... ++||+|||||||+.--. ........++....+.|++|
T Consensus 200 ~Nl~~N~~~~~~v~~s~~~~~v~----~kfd~IisNPPfh~G~~----------------v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 200 KNLAANGVENTEVWASNLYEPVE----GKFDLIISNPPFHAGKA----------------VVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred HhHHHcCCCccEEEEeccccccc----ccccEEEeCCCccCCcc----------------hhHHHHHHHHHHHHHhhccC
Confidence 9999999988 688888776543 49999999999973211 11223458999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
|.+.++.... ......|.+..-.+..+. + ...+.++++.|
T Consensus 260 GeL~iVan~~---l~y~~~L~~~Fg~v~~la-~---~~gf~Vl~a~k 299 (300)
T COG2813 260 GELWIVANRH---LPYEKKLKELFGNVEVLA-K---NGGFKVLRAKK 299 (300)
T ss_pred CEEEEEEcCC---CChHHHHHHhcCCEEEEE-e---CCCEEEEEEec
Confidence 9999987632 334555555422333332 2 23446666554
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.81 E-value=6e-19 Score=130.13 Aligned_cols=114 Identities=29% Similarity=0.453 Sum_probs=90.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
|.+|||+|||+|.+++.+++. + ..+++|+|+++.+++.++.++..+++. .+++++|+.+......+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999988887 4 469999999999999999999998874 399999998886555678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+||||.......... ......+++.+.++|+|||+++++.+
T Consensus 76 ~npP~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAAL-------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----G-------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhh-------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653322110 11367889999999999999999875
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.79 E-value=1e-17 Score=145.12 Aligned_cols=167 Identities=22% Similarity=0.355 Sum_probs=117.6
Q ss_pred eeccCCccccCC-c--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCD-D--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~-~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...|++|.... + +..+.+.+.. ....+|||+|||+|.+++.+++. +|+.+++++|+++.+++.++
T Consensus 169 i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 169 VKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 567788887743 2 4555554332 23468999999999998888776 67789999999999999999
Q ss_pred HHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 88 KTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+++..+++..+++..|+.+.. +++||+|++||||+.... ........++..+.++|||||
T Consensus 238 ~nl~~n~l~~~~~~~D~~~~~----~~~fDlIvsNPPFH~g~~----------------~~~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 238 ATLAANGLEGEVFASNVFSDI----KGRFDMIISNPPFHDGIQ----------------TSLDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred HHHHHcCCCCEEEEccccccc----CCCccEEEECCCccCCcc----------------ccHHHHHHHHHHHHHhcCcCC
Confidence 999999887788888876532 468999999999964221 113346889999999999999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 168 WLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
.++++....-... ..+.+. |....+.. ....+.++.+.++.
T Consensus 298 ~L~iVan~~l~y~---~~l~~~-Fg~~~~la---~~~~f~v~~a~~~~ 338 (342)
T PRK09489 298 ELRIVANAFLPYP---DLLDET-FGSHEVLA---QTGRFKVYRAIMTR 338 (342)
T ss_pred EEEEEEeCCCChH---HHHHHH-cCCeEEEE---eCCCEEEEEEEccC
Confidence 9999876543222 233322 22222222 33445666666543
No 22
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.79 E-value=2.4e-17 Score=140.66 Aligned_cols=187 Identities=13% Similarity=0.235 Sum_probs=128.6
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcc-----cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRIN-----LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~-----~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~ 78 (256)
.|++...++.++.++|.-. ..-++.++.+.+.. ++.+++.+|||||||+|++...++.. .++++++|+|+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~~~~~~atDI 146 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EYGWRFVGSDI 146 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh----CCCCEEEEEeC
Confidence 4566645788899998876 66666676666532 33456799999999999875554443 56889999999
Q ss_pred CHHHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCccccc---c--------c----
Q 025207 79 NPYAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGR---E--------G---- 137 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~---~--------~---- 137 (256)
++.+++.|++|+..| ++.. .+.. .|..+..... ..+.||+|+|||||+......... + .
T Consensus 147 d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 147 DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 999999999999999 6765 4432 3333322211 246899999999999876642110 0 0
Q ss_pred -----chhh-h-cCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 138 -----IASA-W-AGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 138 -----~~~~-~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.... | .||+ ..+...++++...+++..|++..+.........+.+.+++.|.....+.
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTI 291 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEE
Confidence 0011 1 2333 3356677888888888888877766767778889999999888544433
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.78 E-value=2.6e-17 Score=130.55 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=101.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.++++++.++++. +++++|+.+.. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---ccCCccEEE
Confidence 5789999999999999888765 567799999999999999999999888754 89999988752 247899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH---cCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME---KGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~---~g~~~~~~~ 197 (256)
++. +. .+..+++.+.++|+|||++++... .....++....+. .|++.....
T Consensus 115 s~~-~~------------------------~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 115 SRA-LA------------------------SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred ehh-hh------------------------CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecc
Confidence 974 11 146778888999999999998653 3445555555444 577766665
Q ss_pred ecCCCCccEEE
Q 025207 198 QRSTEEENLHI 208 (256)
Q Consensus 198 ~~~~~~~~~~l 208 (256)
+...+..++++
T Consensus 169 ~~~~~~~~~~~ 179 (181)
T TIGR00138 169 PLTGPDRHLVI 179 (181)
T ss_pred ccCCCceEEEE
Confidence 55555444443
No 24
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.7e-17 Score=137.68 Aligned_cols=139 Identities=23% Similarity=0.320 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
|.+.++++-.+. +++.+|||+|||||.++++++++ +. ..++|+|++|.+++.|++|+.+|++.. ....
T Consensus 149 T~lcL~~Le~~~-----~~g~~vlDvGcGSGILaIAa~kL----GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~ 218 (300)
T COG2264 149 TSLCLEALEKLL-----KKGKTVLDVGCGSGILAIAAAKL----GA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKG 218 (300)
T ss_pred HHHHHHHHHHhh-----cCCCEEEEecCChhHHHHHHHHc----CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhccc
Confidence 678888877775 48999999999999999999887 22 369999999999999999999999874 2222
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+..... ..++||+|++|-- ...+..+...+.++|||||+++++..-.+..+.
T Consensus 219 ~~~~~~~---~~~~~DvIVANIL------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~ 271 (300)
T COG2264 219 FLLLEVP---ENGPFDVIVANIL------------------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAES 271 (300)
T ss_pred ccchhhc---ccCcccEEEehhh------------------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHH
Confidence 2322221 2368999999841 234678888999999999999998877777788
Q ss_pred HHHHHHHcCCcEEEEEec
Q 025207 182 ICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~ 199 (256)
+...+.+.||.+..+..+
T Consensus 272 V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HHHHHHhCCCeEeEEEec
Confidence 899998999987666554
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.76 E-value=1.2e-16 Score=127.02 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..++++. +++.+|+.+... .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEE
Confidence 4799999999999999888876 577899999999999999999999998864 899999887532 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE---
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV--- 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 197 (256)
++. + ..+..+++.+.++|+|||+++++.. .....++....+..|+....++
T Consensus 118 ~~~-~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 118 SRA-V------------------------ASLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred Ecc-c------------------------cCHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEEe
Confidence 962 0 1157889999999999999999764 4456677788888898764433
Q ss_pred -ecCCCCccEEEE
Q 025207 198 -QRSTEEENLHII 209 (256)
Q Consensus 198 -~~~~~~~~~~l~ 209 (256)
+...++.++.++
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK00107 172 LPGLDGERHLVII 184 (187)
T ss_pred cCCCCCcEEEEEE
Confidence 333444454443
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.75 E-value=9.6e-17 Score=139.10 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=114.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.+.|.+-...++..+++... .+++.+|||+|||+|.++++++.. +..++|+|+++.|++.++.|+...++.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34454444556666655432 257889999999999998887664 468999999999999999999988877
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. .+..+|+.+.. ..+++||+|++||||....... +......+..++..+.+.|+|||+++++.+.
T Consensus 231 ~i~~~~~D~~~l~--~~~~~~D~Iv~dPPyg~~~~~~------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 231 DFFVKRGDATKLP--LSSESVDAIATDPPYGRSTTAA------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCeEEecchhcCC--cccCCCCEEEECCCCcCccccc------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 5 88899988753 2357899999999997543211 0111234688999999999999999998775
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE
Q 025207 176 ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.. ++...++..|| +...+
T Consensus 297 ~~---~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 297 RI---DLESLAEDAFR-VVKRF 314 (329)
T ss_pred CC---CHHHHHhhcCc-chhee
Confidence 43 45567888898 54433
No 27
>PHA03411 putative methyltransferase; Provisional
Probab=99.74 E-value=5.6e-17 Score=134.26 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.+++.++.. .++.+|+|+|+++.+++.++++.. ...++++|+.+... +.+||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc---cCCCcEEE
Confidence 35679999999999998777665 345689999999999999988742 34789999887642 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHH--HHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAV--IDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~ 192 (256)
+||||++.+..+. ....++.+|..+.+. +..++.....+|+|+|.++++..+.. ...+..+++++.||.
T Consensus 132 sNPPF~~l~~~d~---~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDT---KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EcCCccccCchhh---hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 9999998654332 122455566666665 47889999999999999888654322 356889999999876
Q ss_pred E
Q 025207 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 209 ~ 209 (279)
T PHA03411 209 T 209 (279)
T ss_pred e
Confidence 4
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=4.3e-17 Score=119.15 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=83.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
|+.+|||+|||+|.+++.+++. .++++++|+|+++++++.|++++...+.. .+++++|+ ..... ..+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEE
Confidence 5789999999999999999885 57889999999999999999999665543 38999999 32222 24679999
Q ss_pred EECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++. ...... .......+++.+.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLL------------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCC------------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccccc------------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9975 111010 11236788999999999999999865
No 29
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=3.6e-17 Score=133.54 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=97.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++|.+|||+|||||.+++.+++.. +.++|+|+|+|+.|++.+++.....+.. .+++.+|+.+. ++.+.+||+|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~----g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L--Pf~D~sFD~v 123 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSV----GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL--PFPDNSFDAV 123 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhc----CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC--CCCCCccCEE
Confidence 378999999999999999888884 3679999999999999999998876655 48999999887 5778999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+..-+.+.++ .+.+|+++.|+|||||++++..........+...+.
T Consensus 124 t~~fglrnv~d---------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 124 TISFGLRNVTD---------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred EeeehhhcCCC---------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH
Confidence 99655544433 679999999999999999987755543333333333
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=5.7e-17 Score=125.23 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=90.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|||+|||+|.++..++..+ +++.+++|+|+++++++.|+++++..+.+. +++++|+.+. +....+.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~---~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~~~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL---NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQELEEKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS---TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCSSTTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc---CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-ccccCCCeeEE
Confidence 467999999999999998888532 567899999999999999999999988875 9999999994 32122789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++.++++.. ....+++.+.++|+++|++++....
T Consensus 78 ~~~~~l~~~~---------------------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFP---------------------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTS---------------------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhcc---------------------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988764332 2568899999999999999997765
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.73 E-value=1.1e-16 Score=129.45 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=104.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch-hhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI-ASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~-~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++. .|+.+++|+|+++++++.|++++..+++.. .++++|+ ......+.+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 46789999999999999888876 567799999999999999999998887654 8999998 44322234678999
Q ss_pred EEECCCC--CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 119 MVVNPPY--VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 119 Ii~npP~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+++.|. ....... .......+++.+.++|||||+++++++......++.+.+++.|+...
T Consensus 115 V~~~~~~p~~~~~~~~---------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRHHK---------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccccc---------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 9997643 2111100 00114678999999999999999988777777788999999887544
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=7.3e-16 Score=127.16 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.. .++++++|+|+++.+++.+++++...+.+. +++.+|+.+.. +.+++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAV---GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCCccEE
Confidence 567899999999999988887763 256799999999999999999988776644 88889987652 335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++++.++|+|||++++...
T Consensus 119 ~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 119 TIGFGLRNVPD---------------------YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEecccccCCC---------------------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 99766543332 46789999999999999998664
No 33
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.72 E-value=3.3e-16 Score=132.34 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.+.++.+..+. .++++|||+|||||.+++.++++ +. .+|+|+|++|.+++.|++|+..|++..++....
T Consensus 148 T~lcl~~l~~~~-----~~g~~vLDvG~GSGILaiaA~kl----GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 148 TRLCLELLEKYV-----KPGKRVLDVGCGSGILAIAAAKL----GA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp HHHHHHHHHHHS-----STTSEEEEES-TTSHHHHHHHHT----TB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred HHHHHHHHHHhc-----cCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 778888777764 57899999999999999998886 22 379999999999999999999999887554432
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+ ...++||+|++|-- ...+..++..+.++|+|||+++++..-.....++.
T Consensus 218 ~~~----~~~~~~dlvvANI~------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~ 269 (295)
T PF06325_consen 218 SED----LVEGKFDLVVANIL------------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVI 269 (295)
T ss_dssp TSC----TCCS-EEEEEEES-------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred ecc----cccccCCEEEECCC------------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHH
Confidence 222 22479999999843 34567788888999999999999887677778888
Q ss_pred HHHHHcCCcEEEEE
Q 025207 184 LQMMEKGYAARIVV 197 (256)
Q Consensus 184 ~~~~~~g~~~~~~~ 197 (256)
+.+.+ ||......
T Consensus 270 ~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 270 EAYKQ-GFELVEER 282 (295)
T ss_dssp HHHHT-TEEEEEEE
T ss_pred HHHHC-CCEEEEEE
Confidence 88866 88754433
No 34
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=6.4e-17 Score=133.07 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||||.++..+++.+ .++++|+|+|+|+.|++.|++++...+... +++++|+.+. ++.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~---~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV---GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS---S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC---CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--cCCCCceeEE
Confidence 578999999999999887776653 356799999999999999999998876644 9999999886 4557999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
++..-+.+.++ ....+++++++|||||+++++..+......+...+
T Consensus 121 ~~~fglrn~~d---------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 121 TCSFGLRNFPD---------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEES-GGG-SS---------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EHHhhHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 98654433322 56889999999999999998876555433333333
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.72 E-value=1.9e-15 Score=120.76 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=98.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +++++++++|+++.+++.+++|+..+++.. +++.+|.... ..++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEE
Confidence 46789999999999999988876 677899999999999999999998887654 7888886432 23689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+++.... .+..++..+.+.|+|||++++.........++.+.+++.||...
T Consensus 102 ~~~~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 102 FIGGSGG------------------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred EECCCcc------------------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 9863210 14677889999999999999876666667888999999998643
No 36
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.70 E-value=1.1e-15 Score=118.78 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=106.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.+++|+|||||.++++++.. +|.++++++|-++++++..++|.+..+.++ .++.+++.+.+... .+||.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~----~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALA----GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCE
Confidence 468999999999999999999965 788999999999999999999999999877 99999999887653 27999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|+.. |.. ..+.+++.+...|+|||++++............+++++.|+.
T Consensus 106 iFIG----------------------Gg~---~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIG----------------------GGG---NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEC----------------------CCC---CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 9773 222 278999999999999999999887777777889999999993
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.69 E-value=1.6e-16 Score=127.86 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=93.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||.|.++..+|++ |+.|+|+|+++++++.|+....+.++..++.+..+.+.... .++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEEE
Confidence 7899999999999999999987 57999999999999999999999998877777777766433 379999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
.=..-|.++ ...++..|.+++||||++++++...+....+..+
T Consensus 131 mEVlEHv~d---------------------p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i 173 (243)
T COG2227 131 MEVLEHVPD---------------------PESFLRACAKLVKPGGILFLSTINRTLKAYLLAI 173 (243)
T ss_pred hhHHHccCC---------------------HHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHH
Confidence 644444433 4578999999999999999998876654444333
No 38
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=3.4e-15 Score=125.28 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CC-cceEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NV-HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~-~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..+++.. .++++|+|+|+|++|++.|+++.... .. +.+++++|+.+. ++.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~---~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKV---GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 467899999999999887777653 24569999999999999998775421 12 337899998775 3446789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++..+.+.++ ...+++++.++|||||+++++..
T Consensus 147 D~V~~~~~l~~~~d---------------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVD---------------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999766554432 56889999999999999988764
No 39
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.69 E-value=9e-16 Score=135.30 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=105.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhh--cCCCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~--~~~~f 116 (256)
++++|||+|||+|.+++.++.. ...+|+++|+++.+++.|++|+..|+++ .+++++|+.+.+... ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 6789999999999998765532 2348999999999999999999999974 389999999876543 24589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHH----HHHHHHHcCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQ----ICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~----~~~~~~~~g~ 191 (256)
|+|++||||+...... .. .....+..++..+.++|+|||+++..+++.. ..++ +.+...+.|-
T Consensus 295 DlVilDPP~f~~~k~~---------l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 295 DVIVMDPPKFVENKSQ---------LM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred CEEEECCCCCCCChHH---------HH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999997654311 00 1122367788889999999999998766433 2233 3334444566
Q ss_pred cEEEEEecCCCCcc
Q 025207 192 AARIVVQRSTEEEN 205 (256)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (256)
....+.....+.++
T Consensus 363 ~~~~l~~~~~~~Dh 376 (396)
T PRK15128 363 DVQFIEQFRQAADH 376 (396)
T ss_pred eEEEEEEcCCCCCC
Confidence 66666655444444
No 40
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.68 E-value=8.5e-16 Score=123.42 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=100.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~I 119 (256)
...+|||+|||+|.++..+++. +|+..++|+|+++.+++.|++++...++.+ .++++|+.+...... ++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 5679999999999999888877 788899999999999999999998887765 899999987654332 4689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
++|+|-...... +... ......++..+.++|||||.+++.+.......++...+...+
T Consensus 92 ~~~~pdpw~k~~----h~~~---------r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 92 FLNFPDPWPKKR----HNKR---------RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred EEECCCcCCCCC----cccc---------ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 998752111000 0000 111367899999999999999998766665666777777765
No 41
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.68 E-value=3.3e-15 Score=133.76 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=102.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..++.++.. .++..|+++|+++.+++.+++|+..+++...++++|+.+.......++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILEL----APQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 57899999999999999988887 34469999999999999999999999887788999987643212246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
+|||+...... .+.+...|...... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 319 ~D~Pcs~~G~~---~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 319 LDAPCSATGVI---RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred ECCCCCccccc---ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 99998743211 12222222211110 12356789999999999999999887544 233455566554
No 42
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1.3e-15 Score=122.66 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=82.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.+++. +++|+|+|+|+.+++.+++++...++.. ++...|+.+.. + +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--F-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--c-CCCcCEEE
Confidence 5689999999999998887764 5699999999999999999998887764 77888876642 2 36799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.+. .....++..+.++|+|||.++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEA-------------------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876543322 126788999999999999966543
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=4.7e-15 Score=129.01 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=86.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. + +++|+|+|+++.+++.++++....++. .+++.+|+.+. ++.+++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~----~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK----Y-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccE
Confidence 56789999999999998888775 3 569999999999999999998887764 38999998765 344689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...+++++.++|||||++++++.
T Consensus 190 V~s~~~~~h~~d---------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPD---------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCC---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 999755444332 46789999999999999998653
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.68 E-value=4.5e-15 Score=133.65 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=112.7
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.+...+..++..++.. .++.+|||+|||+|..++.++..+. +++.|+++|+++.+++.+++|+..++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~~------~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 229 DGLITIQDESSMLVAPALDP------KGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred CceEEEEChHHHHHHHHhCC------CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 44455554444444433322 4678999999999999999888742 45699999999999999999999998
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l 169 (256)
+.. .++++|+.+....+ .++||+|++|||+..... ..+.+...|....... .....++..+.++|||||++
T Consensus 300 ~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 300 LTNIETKALDARKVHEKF-AEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred CCeEEEEeCCcccccchh-cccCCEEEEcCCCCCCee---eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 765 88999987754332 368999999999763221 1223333332221111 13457899999999999999
Q ss_pred EEEEeCCCC---HHHHHHHHHHc-CCcE
Q 025207 170 YLVTLTAND---PSQICLQMMEK-GYAA 193 (256)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~-g~~~ 193 (256)
++++++... ...+...++++ .|+.
T Consensus 376 vystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 376 VYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred EEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 998776532 23445555554 3543
No 45
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.67 E-value=1.6e-15 Score=143.13 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=113.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ...|+++|+|+.+++.|++|+..|++. .+++++|+.+.+... .++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCE
Confidence 5789999999999999988874 2 236999999999999999999999985 389999998876443 468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++||||+....... ..+ .....+..++..+.++|+|||.+++.++... .....+.+.+.|+....+..
T Consensus 612 IilDPP~f~~~~~~~------~~~----~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 612 IFIDPPTFSNSKRME------DSF----DVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred EEECCCCCCCCCccc------hhh----hHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEec
Confidence 999999986432100 000 1123467888999999999999988665443 34457788888999888877
Q ss_pred cCCCCccE
Q 025207 199 RSTEEENL 206 (256)
Q Consensus 199 ~~~~~~~~ 206 (256)
...+.++-
T Consensus 681 ~~~~~Dhp 688 (702)
T PRK11783 681 KTLPPDFA 688 (702)
T ss_pred CCCCCCCC
Confidence 66665553
No 46
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.67 E-value=4.3e-15 Score=133.70 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=113.7
Q ss_pred eeccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|..| ++... ++.+++.+++.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+|+.+++.|++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~ 337 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE 337 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH
Confidence 33444444 66655 7888888887764 246789999999999999988876 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.... +.+++||+|++|||+.. ....++.+.+ ++|
T Consensus 338 n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------------------------~~~~~~~l~~-~~~ 392 (443)
T PRK13168 338 NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------------------------AAEVMQALAK-LGP 392 (443)
T ss_pred HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------------------------hHHHHHHHHh-cCC
Confidence 999998765 8999999775432 23467999999999852 2344555554 699
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++.+.+...++.. +.+.||++..+.+
T Consensus 393 ~~ivyvSCnp~tlaRDl~~-L~~~gY~l~~i~~ 424 (443)
T PRK13168 393 KRIVYVSCNPATLARDAGV-LVEAGYRLKRAGM 424 (443)
T ss_pred CeEEEEEeChHHhhccHHH-HhhCCcEEEEEEE
Confidence 9999997766665556554 4467888776654
No 47
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.67 E-value=9e-15 Score=122.04 Aligned_cols=133 Identities=24% Similarity=0.310 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+.... .++.+|||+|||+|.+++.+++. +. ..|+|+|+++.+++.|++|+..+++...+...+
T Consensus 106 t~~~l~~l~~~~-----~~~~~VLDiGcGsG~l~i~~~~~----g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~ 175 (250)
T PRK00517 106 TRLCLEALEKLV-----LPGKTVLDVGCGSGILAIAAAKL----GA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175 (250)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence 455555555442 47899999999999988776654 33 269999999999999999999888743221110
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
.+.+||+|++|.. ...+..++..+.++|||||+++++........++.
T Consensus 176 --------~~~~fD~Vvani~------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~ 223 (250)
T PRK00517 176 --------GDLKADVIVANIL------------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVL 223 (250)
T ss_pred --------CCCCcCEEEEcCc------------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHH
Confidence 0127999999843 12356788999999999999999876666777889
Q ss_pred HHHHHcCCcEEEEEe
Q 025207 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
..+.+.||.......
T Consensus 224 ~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 224 EAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998765444
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=1.6e-14 Score=124.38 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.7
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
|...++.+.+.+++.... ..++.+|||+|||+|.+++.+++. .++.+++++|+++++++.|+++.... +.++
T Consensus 93 ~~~~~e~~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~----~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~ 164 (340)
T PLN02490 93 PGHWTEDMRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLK--ECKI 164 (340)
T ss_pred cCcchHHHHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhhhcc--CCeE
Confidence 444456666666654321 246789999999999998877776 34568999999999999999876432 2378
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+.+|+.+. ++.+++||+|+++..+.+.++ ...+++++.++|+|||+++++.+.
T Consensus 165 i~gD~e~l--p~~~~sFDvVIs~~~L~~~~d---------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 165 IEGDAEDL--PFPTDYADRYVSAGSIEYWPD---------------------PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EeccHHhC--CCCCCceeEEEEcChhhhCCC---------------------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 88998765 333578999999876554332 356899999999999999886532
Q ss_pred ------------CCCHHHHHHHHHHcCCcEEEEEe
Q 025207 176 ------------ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ------------~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+++.+++++.||+...+..
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 12457888999999998766553
No 49
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=4.6e-15 Score=124.24 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=84.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++++++.|+++....++. .+++++|+.+.. +..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCE
Confidence 45689999999999998887765 458999999999999999999887764 378899987753 234578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.++.+..+ ...++..+.++|||||+++++..
T Consensus 116 V~~~~vl~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 116 ILFHAVLEWVAD---------------------PKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEehhHHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEEEE
Confidence 999765543322 35789999999999999987643
No 50
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.66 E-value=1.2e-15 Score=122.55 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=83.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.++++...++++..+...|+.... .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---ccCCCCEEEE
Confidence 5689999999999999888864 468999999999999999998887776667777765432 1357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.++++.+.. ....+++.+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAG-------------------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHH-------------------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 9887654321 25788999999999999966653
No 51
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.66 E-value=1.4e-14 Score=116.80 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=101.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++.+ .++.+|+++|+++.+++.+++|+..+++ . ..++.+|..+.... ..++||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCE
Confidence 578999999999999999888764 2456899999999999999999998884 3 37888888765433 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
|+++... .....+++.+.+.|+|||++++.........++...+++.||..+.+
T Consensus 115 V~~~~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 115 IFIGGGS------------------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEECCCc------------------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 9985321 12567899999999999999986665666678888888889865443
No 52
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.65 E-value=6.1e-15 Score=118.29 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
|+.++.+.+.+++.+... .++.+|||+|||+|.++++++.. . ..+|+++|+++.+++.+++|++.+++.. .+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 445566666666555321 35689999999999999865443 2 2489999999999999999999988754 89
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEe
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTL 174 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 174 (256)
+++|+.+.+.. ...+||+|++||||... ....+++.+.. +|+|+|++++.+.
T Consensus 107 ~~~D~~~~l~~-~~~~fDlV~~DPPy~~g----------------------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 107 VNTNALSFLAQ-PGTPHNVVFVDPPFRKG----------------------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EEchHHHHHhh-cCCCceEEEECCCCCCC----------------------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99999876532 23579999999998521 13344554443 4899999998654
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=6.8e-15 Score=126.26 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=96.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+++++++.|+.+....+. ...++++|+.+.. ..+++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--hccCCCCE
Confidence 35679999999999988777653 56999999999999999988766554 3488899987652 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.+.+..+ ...+++.+.++|||||.+++.+....
T Consensus 202 Vi~~~vLeHv~d---------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g 260 (322)
T PLN02396 202 VLSLEVIEHVAN---------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG 260 (322)
T ss_pred EEEhhHHHhcCC---------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC
Confidence 999655443332 46889999999999999998753211
Q ss_pred --------CHHHHHHHHHHcCCcEEEE
Q 025207 178 --------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 --------~~~~~~~~~~~~g~~~~~~ 196 (256)
..+++...+++.||+...+
T Consensus 261 th~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 261 THQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 2467788888888876554
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=2.8e-15 Score=124.92 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+|+.|++.|++++...+.. .+++++|+.+... ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~--~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCE
Confidence 4678999999999999877776433 46889999999999999999999887654 4889999876521 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|||||.+++...
T Consensus 129 vv~~~~l~~l~~~-------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998766544322 146889999999999999999764
No 55
>PHA03412 putative methyltransferase; Provisional
Probab=99.65 E-value=3.9e-15 Score=120.69 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=89.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+|.+....++ ... ..+.+|||+|||+|.+++.+++.+.. .+...|+++|+++.+++.|++|..
T Consensus 30 ~GqFfTP~~iAr~~~---i~~------~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 30 LGAFFTPIGLARDFT---IDA------CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred CCccCCCHHHHHHHH---Hhc------cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc--
Confidence 356788854333221 111 24689999999999999988876431 135689999999999999998853
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
...++++|+.... .+++||+||+||||+....... .+...+......++..+.+++++|+.
T Consensus 98 --~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~---------~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 98 --EATWINADALTTE---FDTLFDMAISNPPFGKIKTSDF---------KGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred --CCEEEEcchhccc---ccCCccEEEECCCCCCcccccc---------CCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2478889987642 2468999999999997542110 11122445677889998886666664
No 56
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.64 E-value=9.4e-15 Score=122.79 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=109.0
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+.+...+..++..++. .+++.+|||+|||+|..+..++..+. ....|+++|+++.+++.+++|++++++
T Consensus 51 G~~~~qd~~s~~~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~~l~~~~~n~~~~g~ 121 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALE------PDPPERVLDMAAAPGGKTTQISALMK---NEGAIVANEFSKSRTKVLIANINRCGV 121 (264)
T ss_pred CeEEEECHHHHHHHHHhC------CCCcCEEEEECCCchHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCC
Confidence 344555445555444333 25789999999999999999888754 235899999999999999999999987
Q ss_pred cc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEE
Q 025207 96 HA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+ .++..|...... ..+.||.|++|||+.... ...+.+...|.-..... .....++..+.++|||||+++
T Consensus 122 ~~v~~~~~D~~~~~~--~~~~fD~Vl~D~Pcsg~G---~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 122 LNVAVTNFDGRVFGA--AVPKFDAILLDAPCSGEG---VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred CcEEEecCCHHHhhh--hccCCCEEEEcCCCCCCc---ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 65 888888766432 235699999999986322 22233333221111111 134568999999999999999
Q ss_pred EEEeCCCCH--HHHHHHHHH
Q 025207 171 LVTLTANDP--SQICLQMME 188 (256)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~~ 188 (256)
+++++.... +++.+.+.+
T Consensus 197 Ystcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 197 YSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EEeCCCChHHHHHHHHHHHH
Confidence 998876543 334444433
No 57
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.64 E-value=9.2e-15 Score=124.38 Aligned_cols=121 Identities=25% Similarity=0.428 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. + ..+|+|+|+++.+++.|++|+..+++.. .+...+... ..+++||+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~----g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~~~~fDl 228 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL----G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PIEGKADV 228 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc----C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----ccCCCceE
Confidence 46799999999999998877654 2 3489999999999999999999988764 444444222 22468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|++|... ..+..++..+.++|||||+++++........++.+.+++. |....
T Consensus 229 Vvan~~~------------------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 229 IVANILA------------------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred EEEecCH------------------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 9998531 2356788999999999999999877666677788888765 76543
No 58
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.64 E-value=9.8e-15 Score=123.86 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=114.8
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.|.+-.-.++..+.+. .. .++|..|||+.||||.+++++..+ |+.++|+|++..|++-|+.|+...++.
T Consensus 175 f~~p~s~~P~lAR~mVNL-a~--v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNL-AR--VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHH-hc--cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcC
Confidence 444544444455555443 22 258899999999999999998877 779999999999999999999988866
Q ss_pred c-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 97 A-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. .+... |+.... +.+.+||.|+++|||......... .-...+..+++.+.++|++||++++..+
T Consensus 246 ~~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~------------~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 DYPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGE------------GLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceeEEEecccccCC--CCCCccceEEecCCCCcccccccc------------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 45555 877663 444579999999999876643211 1124578899999999999999999765
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecC
Q 025207 175 TANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
......+.+.+|++.......
T Consensus 312 -----~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 -----RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -----CcchhhHhhcCceEEEEEEEe
Confidence 223556667888876655443
No 59
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.8e-14 Score=110.66 Aligned_cols=124 Identities=21% Similarity=0.319 Sum_probs=94.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+|+|||||.+++.++.+ ++ ..|+|+|+++++++.+++|..+..-...++..|+.+. ...+|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l----Ga-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL----GA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc----CC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceEE
Confidence 37889999999999999988876 33 4899999999999999999998655669999999876 46899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.||||...... ++ ..+++.+++.+. +++- .+.....+.+.+.....|+.+...+
T Consensus 114 mNPPFG~~~rh------aD---------r~Fl~~Ale~s~-------vVYs-iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 114 MNPPFGSQRRH------AD---------RPFLLKALEISD-------VVYS-IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ECCCCcccccc------CC---------HHHHHHHHHhhh-------eEEE-eeccccHHHHHHHHHhcCCeEEEEE
Confidence 99999754221 12 234556665542 3444 4445567888999999998776554
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=2.4e-14 Score=121.07 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=98.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.+++.. .+..+|+|+|+++.+++.|+++....+... +++.+|+.+. ++.+++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV---GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 578999999999999877666653 345689999999999999999998877654 7888888764 2335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------C
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------N 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~ 177 (256)
+++..+.+.++ ...+++++.++|||||++++..... .
T Consensus 151 i~~~v~~~~~d---------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 151 ISNCVINLSPD---------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred EEcCcccCCCC---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 99876654332 3578999999999999999864211 1
Q ss_pred CHHHHHHHHHHcCCcEEEE
Q 025207 178 DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~ 196 (256)
...++.+++++.||....+
T Consensus 210 ~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CHHHHHHHHHHCCCCceEE
Confidence 2346677777778776544
No 61
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=2.2e-14 Score=128.74 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=113.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh--hcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK--RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD 117 (256)
.++.+|||+|||+|..++.++..+. +.+.|+++|+++.+++.+++|+.++|+.+ .++++|+.+.... ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG---DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 5789999999999999999888753 34589999999999999999999999865 8889998765321 2246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK- 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~- 189 (256)
.|++|+|...... ..+.+...|...... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 328 ~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 328 RILLDAPCSGLGT---LHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EEEEeCCCCcccc---cccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999653221 122222222111100 11356889999999999999999887663 233456666665
Q ss_pred CCcEEE----EEecCCCCccEEEEEEEe
Q 025207 190 GYAARI----VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 190 g~~~~~----~~~~~~~~~~~~l~~~~~ 213 (256)
+|.... +++..+..+.+|+....|
T Consensus 405 ~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 405 DWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 455331 223333445555555444
No 62
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.63 E-value=1.4e-14 Score=114.69 Aligned_cols=156 Identities=26% Similarity=0.343 Sum_probs=102.0
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH
Q 025207 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+.|.+-...++..++..-. + +++..|||+.||+|.++++.+.+.....| ...++|+|+++++++.|++|+..
T Consensus 7 ~~~a~L~~~lA~~ll~la~-~--~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAG-W--RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC-C--CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4455556677777776543 2 57789999999999999999888443221 11399999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 93 HNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.++.. .+.++|+.+.. ..++++|.|++||||........ .....+..+++.+.++|++ ..++
T Consensus 84 ag~~~~i~~~~~D~~~l~--~~~~~~d~IvtnPPyG~r~~~~~-------------~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP--LPDGSVDAIVTNPPYGRRLGSKK-------------DLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp TT-CGGEEEEE--GGGGG--GTTSBSCEEEEE--STTSHCHHH-------------HHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred cccCCceEEEecchhhcc--cccCCCCEEEECcchhhhccCHH-------------HHHHHHHHHHHHHHHHCCC-CEEE
Confidence 88765 78888988874 34579999999999975433210 0134578889999999999 4444
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+ +.... .+.+.+...++.....
T Consensus 148 l-~~~~~---~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 148 L-TTSNR---ELEKALGLKGWRKRKL 169 (179)
T ss_dssp E-EESCC---CHHHHHTSTTSEEEEE
T ss_pred E-EECCH---HHHHHhcchhhceEEE
Confidence 4 33332 3456666655554433
No 63
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.63 E-value=1.2e-15 Score=109.61 Aligned_cols=100 Identities=22% Similarity=0.387 Sum_probs=76.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC-CC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN-PP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n-pP 124 (256)
|||+|||+|..+..++..+ ...+..+++|+|++++|++.++++....+.+.+++++|+.+.. ...++||+|++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~--~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP--FSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--HHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--ccCCCeeEEEEcCCc
Confidence 7999999999999998886 3335579999999999999999999887777799999998853 346799999993 32
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+.+.++ .....+++.+.++|+|||
T Consensus 78 ~~~~~~-------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSP-------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSH-------------------HHHHHHHHHHHHTEEEEE
T ss_pred cCCCCH-------------------HHHHHHHHHHHHHhCCCC
Confidence 333222 237899999999999998
No 64
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=4.5e-14 Score=127.14 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=111.9
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.++.+.....+..++..++.. .++.+|||+|||+|..+..++..+. .+++|+|+|+++.+++.+++++...
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~------~~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNP------QPGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCC------CCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHh
Confidence 344455544444444433332 4778999999999999988888653 2458999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeE
Q 025207 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~ 168 (256)
|+.. +++++|+..... +++||.|+++||+..... ..+.++..|....... .....++..+.++|||||+
T Consensus 299 g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~---~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGV---LGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcch---hhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 8865 888999876532 368999999999754322 1122222222111111 1345789999999999999
Q ss_pred EEEEEeCCCCH---HHHHHHHHHc-CCc
Q 025207 169 LYLVTLTANDP---SQICLQMMEK-GYA 192 (256)
Q Consensus 169 l~~~~~~~~~~---~~~~~~~~~~-g~~ 192 (256)
+++++++.... ..+..+++.+ ++.
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 99999876532 2445556554 344
No 65
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=126.51 Aligned_cols=130 Identities=22% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+..+||||||+|.+++.+|.. .|+..++|+|+++.+++.|.+++..+++.+ .++++|+......+.++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35679999999999999988887 788899999999999999999999988876 8999998776544557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
+++.|... +.. .+ .+.....++..+.++|+|||.+.+.+............+.+.
T Consensus 197 ~lnFPdPW-~Kk---------rH-----RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPW-DKK---------PH-----RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCc-ccc---------ch-----hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99876321 111 00 112357899999999999999999887666666666666655
No 66
>PRK04266 fibrillarin; Provisional
Probab=99.62 E-value=1.4e-13 Score=112.76 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=92.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-hhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~ 118 (256)
.+++.+|||+|||+|.++..++... +...|+|+|+++.|++.+.+++... .+..++.+|+..... ....++||+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v----~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV----EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhccccCCE
Confidence 3678999999999999999888874 3458999999999999887776543 223778888765311 112356999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC------CC---CHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT------AN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~---~~~~~~~~~~~~ 189 (256)
|+++.+. + .....+++.+.++|||||+++++.+. .. ...+..+.+++.
T Consensus 145 i~~d~~~---p--------------------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~a 201 (226)
T PRK04266 145 IYQDVAQ---P--------------------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEG 201 (226)
T ss_pred EEECCCC---h--------------------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHc
Confidence 9986431 0 01245688999999999999994221 11 112356888889
Q ss_pred CCcEEEEEec
Q 025207 190 GYAARIVVQR 199 (256)
Q Consensus 190 g~~~~~~~~~ 199 (256)
||+.......
T Consensus 202 GF~~i~~~~l 211 (226)
T PRK04266 202 GFEILEVVDL 211 (226)
T ss_pred CCeEEEEEcC
Confidence 9997765543
No 67
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.62 E-value=1.3e-13 Score=111.04 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=95.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.....++..+. ..++.+|||+|||+|.+++.++.. .++.+|+++|+++++++.+++|+..++... +++.+|+
T Consensus 27 ~v~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 27 EVRLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 33334445442 246789999999999999888766 566799999999999999999999888754 8888888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+.... ....+|.++.+.. .....+++.+.++|+|||++++.........++.+
T Consensus 100 ~~~~~~-~~~~~d~v~~~~~-------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 153 (196)
T PRK07402 100 PECLAQ-LAPAPDRVCIEGG-------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISE 153 (196)
T ss_pred HHHHhh-CCCCCCEEEEECC-------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHH
Confidence 664322 1234677655311 01468899999999999999998765554455666
Q ss_pred HHHHc
Q 025207 185 QMMEK 189 (256)
Q Consensus 185 ~~~~~ 189 (256)
.+...
T Consensus 154 ~~~~~ 158 (196)
T PRK07402 154 GLAQL 158 (196)
T ss_pred HHHhc
Confidence 66554
No 68
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=1.5e-14 Score=120.89 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
...++.+++.+. ..++.+|||+|||+|.++..++.. +.+++++|+++.+++.++++.. ...++.+|+
T Consensus 28 ~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~ 94 (251)
T PRK10258 28 RQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA----ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCc
Confidence 334444555543 245789999999999987666543 4689999999999999988642 236788888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|+++.++...++ ...++.++.++|+|||.+++++.......++..
T Consensus 95 ~~~--~~~~~~fD~V~s~~~l~~~~d---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~ 151 (251)
T PRK10258 95 ESL--PLATATFDLAWSNLAVQWCGN---------------------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQ 151 (251)
T ss_pred ccC--cCCCCcEEEEEECchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHH
Confidence 764 334578999999877643322 468899999999999999998766554444444
Q ss_pred HH
Q 025207 185 QM 186 (256)
Q Consensus 185 ~~ 186 (256)
.+
T Consensus 152 ~~ 153 (251)
T PRK10258 152 AW 153 (251)
T ss_pred HH
Confidence 43
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=3.7e-14 Score=105.22 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..+++. .++++++++|+++.+++.+++++..++... .++.+|
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 77 (124)
T TIGR02469 5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARL----VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD 77 (124)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 344455555542 245679999999999999888876 566799999999999999999998877654 777788
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...... ...+||.|++..+. .....+++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~-~~~~~D~v~~~~~~------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 78 APEALED-SLPEPDRVFIGGSG------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccChh-hcCCCCEEEECCcc------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 6643222 23689999985321 114688999999999999999853
No 70
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=8.2e-15 Score=122.71 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .|+++|+|+|+++.|++.|+++ ..+++.+|+.+.. .+++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~---~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK---PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC---CCCCceEEE
Confidence 57899999999999998877776 5778999999999999998763 2378889987652 247899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.++ ...++.++.+.|||||++++..
T Consensus 95 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPE---------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCC---------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 9988765543 4678999999999999999864
No 71
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=2.7e-14 Score=119.95 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..+..++.. . +++|+|+|+++.+++.|+++... .....+..+|+.+. ++.+++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~----~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~--~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK----Y-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK--DFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh----c-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC--CCCCCCeEEEE
Confidence 57889999999999987777653 2 56999999999999999987653 22347888888654 33457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++++.++|||||++++...
T Consensus 123 s~~~l~h~~~-------------------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 123 SRDAILHLSY-------------------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EhhhHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9654433221 1257889999999999999999764
No 72
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=3.5e-14 Score=117.77 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=86.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+++.|++.|++++...+. ..+++++|+.+... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCE
Confidence 4678999999999999888877643 3678999999999999999999876543 34889999877532 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPE-------------------DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEeec
Confidence 9997665443321 146889999999999999999764
No 73
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.60 E-value=7.1e-14 Score=123.02 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred eeccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+.| +.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~---~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVRE---IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH
Confidence 33444433 33333 45555555554321 34679999999999999888753 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|++.++++. +++.+|+.+.... ...+||+|++|||+... ...+++.+. .++|++
T Consensus 274 N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~G~-----------------------~~~~l~~l~-~~~p~~ 328 (374)
T TIGR02085 274 SAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNPPRRGI-----------------------GKELCDYLS-QMAPKF 328 (374)
T ss_pred HHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECCCCCCC-----------------------cHHHHHHHH-hcCCCe
Confidence 999998854 8999999876533 22469999999997311 134445444 379999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 168 WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++.+.+...++..+ .||....+.
T Consensus 329 ivyvsc~p~TlaRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred EEEEEeCHHHHHHHHHHh---cCceEEEEE
Confidence 999977666656665555 578776654
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.60 E-value=1.3e-13 Score=123.63 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=100.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..++..+ ++++|+|+|+++.+++.+++|++..|+...+ ..+|..........++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~----~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELA----PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 578999999999999999988874 3569999999999999999999998876533 5566543321112468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
|++++|+.....- .+.+...|..... -......++..+.++|||||++++++++.. ....+...++++
T Consensus 313 VllDaPcSg~G~~---~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 313 ILLDAPCSATGVI---RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred EEEcCCCCCCccc---ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 9999997654321 1222222221111 112356789999999999999999998774 334455666655
No 75
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.59 E-value=3.4e-14 Score=112.62 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=94.2
Q ss_pred ccCCccccCCc--hHHHHHHHHHh-hcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD--SFALVDALLAD-RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 13 ~~~~~~~p~~~--~~~l~~~l~~~-~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
......+|+++ .+.+.+++... + ++.+|||+.||||.++++++.. + ...|+.+|.++.+++.+++|
T Consensus 16 p~~~~~RPT~drvrealFniL~~~~~------~g~~vLDLFaGSGalGlEALSR----G-A~~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 16 PKGDNTRPTTDRVREALFNILQPRNL------EGARVLDLFAGSGALGLEALSR----G-AKSVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp TT--TS-SSSHHHHHHHHHHHHCH-H------TT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHHH
T ss_pred CCCCCcCCCcHHHHHHHHHHhccccc------CCCeEEEcCCccCccHHHHHhc----C-CCeEEEEECCHHHHHHHHHH
Confidence 34467788877 66667766665 3 6899999999999999998776 2 24899999999999999999
Q ss_pred HHHcCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hcc
Q 025207 90 LEAHNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLL 163 (256)
Q Consensus 90 ~~~~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L 163 (256)
++..+... .++..|....+... ...+||+|+++|||.... .+..++..+. .+|
T Consensus 85 ~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------------------~~~~~l~~l~~~~~l 143 (183)
T PF03602_consen 85 LEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------------------YYEELLELLAENNLL 143 (183)
T ss_dssp HHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------------------HHHHHHHHHHHTTSE
T ss_pred HHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---------------------HHHHHHHHHHHCCCC
Confidence 99988765 88899987776543 367899999999996321 1355666665 789
Q ss_pred ccCeEEEEEEeCC
Q 025207 164 SKRGWLYLVTLTA 176 (256)
Q Consensus 164 kpgG~l~~~~~~~ 176 (256)
+++|.+++-+...
T Consensus 144 ~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 144 NEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEEEEEEEETT
T ss_pred CCCEEEEEEecCC
Confidence 9999999965433
No 76
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.59 E-value=1.2e-13 Score=119.13 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=104.4
Q ss_pred eccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 12 SSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 12 ~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.|..| +.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++|
T Consensus 144 ~~~~~sF~Q~n~~~~~~l~~~v~~~l~~---~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n 214 (315)
T PRK03522 144 FIRPQSFFQTNPAVAAQLYATARDWVRE---LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQS 214 (315)
T ss_pred EECCCeeeecCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHH
Confidence 3444443 33332 45566655555432 25689999999999999888874 45899999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+..+++.. +++++|+.+.... ..+.||+|++|||..-. ...+++.+ ..++|+++
T Consensus 215 ~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~G~-----------------------~~~~~~~l-~~~~~~~i 269 (315)
T PRK03522 215 AAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNPPRRGI-----------------------GKELCDYL-SQMAPRFI 269 (315)
T ss_pred HHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECCCCCCc-----------------------cHHHHHHH-HHcCCCeE
Confidence 99999864 8999999876432 23579999999995311 12233333 33688888
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++++.+.....++..+ .||+...+.
T Consensus 270 vyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 270 LYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred EEEECCcccchhHHhhc---cCcEEEEEE
Confidence 88877666666666554 477776654
No 77
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=109.97 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE
Q 025207 24 SFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~ 100 (256)
...+++|+.+.+.... .+...+|||+|||+|.++..+++. .-...++|+|+++++++.|+...++.+.++ ++.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence 5667788777764111 233449999999999998777765 444579999999999999988888888875 899
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
+.|+.++ .+..+.||+|+---.|-..+-.. .+..+. +.-++..+.++|+|||++++..+++. ..
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~-----------d~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T-~d 187 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSP-----------DGPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT-KD 187 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCC-----------CCcccc--eeeehhhHhhccCCCcEEEEEecCcc-HH
Confidence 9999886 45567888887643332211100 011111 23457778889999999999888776 77
Q ss_pred HHHHHHHHcCCcE
Q 025207 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++...+...+|..
T Consensus 188 ELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 188 ELVEEFENFNFEY 200 (227)
T ss_pred HHHHHHhcCCeEE
Confidence 8889998888754
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.59 E-value=3.6e-14 Score=129.04 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.+++. . +++++|+|+|+.+++.|+++.........++.+|+.... +.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~----~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAEN----F-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--CCCCCEEEEE
Confidence 46789999999999998877765 2 569999999999999999887544434588899987652 2357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+.+.++ ...++.++.++|||||++++...
T Consensus 338 s~~~l~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 338 SRDTILHIQD---------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ECCcccccCC---------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9766654433 46889999999999999998753
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.58 E-value=3.7e-14 Score=115.76 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++... ++.+|+++|+++++++.|++++..++++. +++.+|
T Consensus 63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~---~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVG---RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 345556666553 35789999999999999988888743 24579999999999999999999988764 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+.... ..+||+|+++++. ..+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEP--LAPYDRIYVTAAG---------------------------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcc--cCCCCEEEEcCCc---------------------------ccccHHHHHhcCcCcEEEEEE
Confidence 8765432 3689999997653 223445678899999999843
No 80
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.58 E-value=7.9e-14 Score=124.72 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=97.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. ++++|+++|+++.+++.+++|+.+.|+.. .+..+|..... ...+++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 5788999999999999998888753 35699999999999999999999998865 88899987642 2234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++|+|+...... ...+...|...... ......++..+.++|||||++++++++..
T Consensus 312 l~DaPCsg~G~~---~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTA---RNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccc---cCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999999654331 12222222111111 12456789999999999999999998765
No 81
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=1.3e-14 Score=121.62 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++++|+|+|+++.+++.|++++. ...++.+|+..... ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQP---PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCC---CCCccEEE
Confidence 57799999999999998888876 567799999999999999988742 23788888876532 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+.++ ...+++.+.+.|||||++++..+
T Consensus 99 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPD---------------------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCC---------------------HHHHHHHHHHhcCCCcEEEEECC
Confidence 9987654432 46789999999999999998654
No 82
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=5.1e-15 Score=104.42 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=73.6
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
||+|||+|..+..+++. ++.+++++|+++++++.++++....+. .+..+|+.+. ++.+++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l--~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDL--PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSS--SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhC--cccccccccccccccee
Confidence 89999999987777664 567999999999999999998754333 4889998887 55579999999975544
Q ss_pred CCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 127 PTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. .....+++++.++|||||++++
T Consensus 72 ~~---------------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL---------------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS---------------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec---------------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 33 1267899999999999999985
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.6e-14 Score=114.33 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+.+.+++.+. ..++.+|||+|||+|..+..+++.+. ++++|+++|+++++++.|++|+..++.. .+++.+
T Consensus 58 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~---~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 58 PHMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIE---RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 445556666543 25778999999999999988887653 2458999999999999999999988865 388999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.+..+. .++||+|+++... ..+...+.+.|+|||++++..
T Consensus 132 d~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 132 DGKRGLEK--HAPFDAIIVTAAA---------------------------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcccCCcc--CCCccEEEEccCc---------------------------chhhHHHHHhcCcCcEEEEEE
Confidence 98765433 4689999997543 233456778999999998843
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=2e-14 Score=122.41 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=84.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++..++++.++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~---~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI---QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc---cCCccEEEE
Confidence 4569999999999998888774 4699999999999999999998888866788888765422 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..+++.+. .....+++.+.++|+|||+++++.
T Consensus 191 ~~vl~~l~~-------------------~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNR-------------------ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCH-------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876654332 126788999999999999977654
No 85
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.57 E-value=7.6e-14 Score=114.55 Aligned_cols=127 Identities=18% Similarity=0.202 Sum_probs=96.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++|||+|||+|..+..+++. +++++++|+|+++++++.+++++...++.. +++..|+..... +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~----~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER----HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeeh
Confidence 47999999999998888776 567899999999999999999998877654 788888755421 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~ 186 (256)
.-.+.+.++ ...+++.+.++|+|||++++..... ....++.+.+
T Consensus 74 ~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 74 FEVIHHIKD---------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred HHHHHhCCC---------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 533322211 4688999999999999999865421 1235677888
Q ss_pred HHcCCcEEEEEe
Q 025207 187 MEKGYAARIVVQ 198 (256)
Q Consensus 187 ~~~g~~~~~~~~ 198 (256)
.+.||.......
T Consensus 133 ~~~Gf~~~~~~~ 144 (224)
T smart00828 133 ARNNLRVVEGVD 144 (224)
T ss_pred HHCCCeEEEeEE
Confidence 889998765544
No 86
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=4e-14 Score=129.34 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..+..++.. .|+.+++|+|+++.|++.|+++....+.+..++++|+.+....+.+++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 6789999999999987777665 678899999999999999999877666555788899877532245688999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++.....-. ..+..........+++.+.++|||||++++...
T Consensus 494 n~vLH~L~syIp--------~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIE--------YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcc--------cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 987653211000 000000123467899999999999999999764
No 87
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.56 E-value=3.7e-14 Score=122.12 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=109.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhc---ccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLG---QEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~---~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
..+|+|...+.++++++ . ..++.+|+|++||+|.+++++...+. .......++|+|+++.++..|+-|+.
T Consensus 26 G~~~TP~~i~~l~~~~~----~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLL----N---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp GGC---HHHHHHHHHHH----T---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHhhh----h---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 45788955555555544 2 24678999999999999988887541 11246799999999999999999988
Q ss_pred HcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCC--Ccccccccchhhh-cCCCCcHHHHHHHHHHHhhcccc
Q 025207 92 AHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTP--EDEVGREGIASAW-AGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 92 ~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
.++... .+..+|............||+|++||||.... ..... ....... ....... ...++..+.+.|++
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELE-KDERFKKYFPPKSNA--EYAFIEHALSLLKP 175 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGC-TTCCCTTCSSSTTEH--HHHHHHHHHHTEEE
T ss_pred hhccccccccccccccccccccccccccccccCCCCcccccccccccc-ccccccccCCCccch--hhhhHHHHHhhccc
Confidence 777544 48888876543221246899999999998762 22111 1111111 1111111 23478889999999
Q ss_pred CeEEEEEEeCC----C-CHHHHHHHHHHcCC-cEEEEEec-C--CCCccEEEEEEEecC
Q 025207 166 RGWLYLVTLTA----N-DPSQICLQMMEKGY-AARIVVQR-S--TEEENLHIIKFWRDF 215 (256)
Q Consensus 166 gG~l~~~~~~~----~-~~~~~~~~~~~~g~-~~~~~~~~-~--~~~~~~~l~~~~~~~ 215 (256)
||++.++.+.. . ....+++.+.+.+. ..+...+. . .......++.+.+..
T Consensus 176 ~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 176 GGRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp EEEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred ccceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence 99998888743 1 23467777766543 22222221 1 123344555555555
No 88
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.56 E-value=3.9e-13 Score=114.96 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=90.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
..++++|||+|||+|.++..++.. +++ .|+|+|.|+.++..++..-... .....+...++.+... ..+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~----g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH----GAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCCcC
Confidence 357899999999999987766654 333 7999999999987653322211 1223667777766532 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------------------- 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 176 (256)
+|+++-.+++..+ ...++.++++.|+|||.+++.+...
T Consensus 191 ~V~s~gvL~H~~d---------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~ 249 (314)
T TIGR00452 191 TVFSMGVLYHRKS---------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY 249 (314)
T ss_pred EEEEcchhhccCC---------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc
Confidence 9999876655433 4578999999999999999853210
Q ss_pred --CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 --NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++..++++.||+...+.
T Consensus 250 flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 250 FIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEE
Confidence 024567788888999876654
No 89
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=5.4e-14 Score=111.41 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=82.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.++||+|||.|..++.+|+. |..|+++|+|+.+++.+.+.+...+++.+....|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc---cCCcCEEEE
Confidence 6789999999999999999987 7799999999999999999888888888889999877643 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.+...... ....+++.+...++|||+.++++
T Consensus 101 t~v~~fL~~~-------------------~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRE-------------------LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GG-------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHH-------------------HHHHHHHHHHhhcCCcEEEEEEE
Confidence 5444433322 26788999999999999988855
No 90
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=9.6e-14 Score=116.76 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-+++.+|||||||.|.+++.+++. + +++|+|+.+|++..+.+++.+...|+.. ++...|..+. +.+||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~----~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAER----Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHH----H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHH----c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----CCCCC
Confidence 478999999999999999888887 4 6899999999999999999999988865 7888887664 24999
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|++--.+-+. + ...+..+++.+.++|||||++++-..
T Consensus 130 ~IvSi~~~Ehv---------------g----~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 130 RIVSIEMFEHV---------------G----RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEEESEGGGT---------------C----GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEEechhhc---------------C----hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99994222111 1 12378999999999999999987443
No 91
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.55 E-value=1.4e-13 Score=120.16 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhc--CCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRL--AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~--~~~ 115 (256)
.+++|||+.|-||.+++.++.. |+ +|+++|+|..+++.|++|+..|+++. .++++|+++.+.... ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 4899999999999999988875 44 89999999999999999999999864 899999999987643 348
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g 190 (256)
||+||.+||=+..+.... ......+..++..+.++|+|||+++++++...... .+...+...+
T Consensus 291 fDlIilDPPsF~r~k~~~------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 291 FDLIILDPPSFARSKKQE------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred ccEEEECCcccccCcccc------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 999999999776554331 11234578889999999999999999887655433 2334444455
Q ss_pred CcEEEEEecCC
Q 025207 191 YAARIVVQRST 201 (256)
Q Consensus 191 ~~~~~~~~~~~ 201 (256)
.....+.....
T Consensus 359 ~~~~~~~~~~~ 369 (393)
T COG1092 359 RRAQEIEGEGQ 369 (393)
T ss_pred CcEEEeeccCC
Confidence 55555543333
No 92
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.55 E-value=2.8e-13 Score=118.71 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=104.1
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+++++... ++.+++++.+.+. ..+.+|||++||+|.+++.+++.. ..|+|+|+++.+++.|++|+..+
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHh
Confidence 456666665 7778888777653 123579999999999999888752 38999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhc--------------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 94 NVHA-DLINTDIASGLEKRL--------------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~--------------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
++++ +++.+|+.+.+.... ..+||+|+.|||+.-. ...+++.
T Consensus 252 ~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~-----------------------~~~~l~~ 308 (362)
T PRK05031 252 GIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL-----------------------DDETLKL 308 (362)
T ss_pred CCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC-----------------------cHHHHHH
Confidence 9865 899999988654321 1258999999996210 2344555
Q ss_pred HhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 159 ADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 159 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
+.+ +++++++++.+.+...++..+. + ||....+..
T Consensus 309 l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~ 343 (362)
T PRK05031 309 VQA---YERILYISCNPETLCENLETLS-Q-THKVERFAL 343 (362)
T ss_pred HHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEE
Confidence 443 6888888665544444554443 3 788766553
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=112.14 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
.-.++..+++.+. ..++.+|||+|||+|.++..+++.++ ++++|+++|+++++++.+++++...+... +++.+
T Consensus 61 ~p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 61 AIHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred cHHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 3455566666553 25789999999999999988887643 34699999999999999999999888754 89999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|......+ .+.||+|+++-.. ..+...+.+.|||||++++..
T Consensus 135 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEE--NAPYDRIYVTAAG---------------------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCc--CCCcCEEEECCCc---------------------------ccchHHHHHhhCCCcEEEEEE
Confidence 98765432 4789999985321 223445677899999998843
No 94
>PTZ00146 fibrillarin; Provisional
Probab=99.54 E-value=2.6e-12 Score=107.72 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=111.8
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|+..|+.-+..++-+++.+|||+|||+|.++..++..+. +...|+++|+++.+.+.+.+..... .
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG---~~G~VyAVD~s~r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVG---PEGVVYAVEFSHRSGRDLTNMAKKR-P 181 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-C
Confidence 3665555 778888887777766667889999999999999999998864 3458999999998665444433221 2
Q ss_pred cceEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 96 HADLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..++..|+.... .....++||+|+++... ++ ....++.++.++|||||.+++...
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pd--------------------q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PD--------------------QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeCCC---cc--------------------hHHHHHHHHHHhccCCCEEEEEEe
Confidence 2377888876432 11123579999997531 11 134556778999999999999433
Q ss_pred CCC-----CHHHH----HHHHHHcCCcEEEEEe-cCCCCccEEEEEEEe
Q 025207 175 TAN-----DPSQI----CLQMMEKGYAARIVVQ-RSTEEENLHIIKFWR 213 (256)
Q Consensus 175 ~~~-----~~~~~----~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~ 213 (256)
... ..+++ .+++++.+|+...... ......+..++-..+
T Consensus 239 a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 239 ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 211 12232 4778888998765443 333444544443333
No 95
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.54 E-value=4e-13 Score=108.54 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhccc--CCCceEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEcchhhchhhhcC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQE--VPGVQYIATDINPYAVEVTRKTLEAHNVHA----DLINTDIASGLEKRLA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~--~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----~~~~~d~~~~~~~~~~ 113 (256)
+.++.++||++||||.+++-+...+... ..+.+|+.+|+||+|++.++++....++.. .++.+|+.+. ++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L--pFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL--PFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--CCCC
Confidence 4677999999999999998888876532 123689999999999999999987766543 7899999887 4778
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+||..+.-.-.-+.+ ..++.+++++++|||||++.+...+....+.+...+..+.|++
T Consensus 176 ~s~D~yTiafGIRN~t---------------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT---------------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcceeEEEecceecCC---------------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999998743222111 2678999999999999999987755543334444444444444
No 96
>PRK08317 hypothetical protein; Provisional
Probab=99.54 E-value=7.4e-13 Score=109.30 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+.+++.+. ..++.+|||+|||+|.++..++..+ .++++++|+|+++.+++.++++.........+...|+.
T Consensus 6 ~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 6 RYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRV---GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34455555443 2577899999999999988888763 25679999999999999999884333333478888876
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. ++.+++||+|+++-.+.+..+ ...+++.+.++|+|||.+++..+
T Consensus 80 ~~--~~~~~~~D~v~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GL--PFPDGSFDAVRSDRVLQHLED---------------------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cC--CCCCCCceEEEEechhhccCC---------------------HHHHHHHHHHHhcCCcEEEEEec
Confidence 54 233578999999755543322 46789999999999999998664
No 97
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.53 E-value=5.8e-13 Score=119.66 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=108.1
Q ss_pred eeccCCc-cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEV-YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~-~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.+.. +++... ++.+++.+.+.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 262 ~~~~~~~F~Q~N~~~~~~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~ 332 (431)
T TIGR00479 262 FSLSARDFFQVNSGQNEKLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ 332 (431)
T ss_pred EEECCCceeecCHHHHHHHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH
Confidence 3444544 444444 6667777766653 245689999999999999998875 2389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.+... ...+||+|++|||.... ...+++.+.+ ++|
T Consensus 333 n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-----------------------~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 333 NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-----------------------AAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-----------------------CHHHHHHHHh-cCC
Confidence 999998865 89999998765432 23579999999996311 1344554443 789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++. ......-...+.+.||....+..
T Consensus 389 ~~ivyvsc~-p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 389 ERIVYVSCN-PATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CEEEEEcCC-HHHHHHHHHHHHHCCeeEEEEEE
Confidence 988887543 33333445556677887766553
No 98
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.53 E-value=4.5e-13 Score=106.94 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CC-Ccc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AG-LVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~-~fD 117 (256)
++.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|++.++... +++.+|+.+.+.... .. .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----GA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----CC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999988876 32 389999999999999999999998753 899999977654322 22 489
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~ 173 (256)
+|+.+|||.... ...++..+ ..+|+++|++++-+
T Consensus 124 vv~~DPPy~~~~----------------------~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNGA----------------------LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCCCc----------------------HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999999995311 23334333 34789999888744
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=2.9e-13 Score=111.84 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=91.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.++..+++.+.......+.+|||+|||+|.++..++.. ++..+++++|+++.+++.++++.. ....++.+|+.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~ 90 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchh
Confidence 33444444443222234589999999999998888776 567789999999999999887654 13378888887
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+.. +.+++||+|+++-.+.+..+ ...++..+.++|+|||.+++..+......+
T Consensus 91 ~~~--~~~~~fD~vi~~~~l~~~~~---------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~ 143 (240)
T TIGR02072 91 KLP--LEDSSFDLIVSNLALQWCDD---------------------LSQALSELARVLKPGGLLAFSTFGPGTLHE 143 (240)
T ss_pred hCC--CCCCceeEEEEhhhhhhccC---------------------HHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence 653 33578999999765543322 467899999999999999997765544433
No 100
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.53 E-value=3.8e-13 Score=115.14 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.-.+.++++.+..++.++..+......++.+|||+|||+|.+++.+++. +.+|+|+|+++.|++.++++....+
T Consensus 117 ~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~ 190 (315)
T PLN02585 117 KVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEAL 190 (315)
T ss_pred ceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcc
Confidence 3456777777777777776654211135789999999999998887764 4689999999999999999987642
Q ss_pred ------CcceEEEcchhhchhhhcCCCccEEEECCCCCCCC
Q 025207 95 ------VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 95 ------~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
....+...|+.+. +++||+|+|.-.+.+.+
T Consensus 191 ~~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 191 AALPPEVLPKFEANDLESL-----SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred cccccccceEEEEcchhhc-----CCCcCEEEEcCEEEecC
Confidence 1236777786543 47899999976554433
No 101
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.53 E-value=2e-13 Score=109.46 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=100.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.....+||||||.|.+++.+|.. .|+..++|+|+....+..+.+.+...++++ .++++|+...+.... ++++|.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchhe
Confidence 34459999999999999999888 899999999999999999999999999887 999999988776554 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|..+.| ++-.+.+....++. ...++..+.++|+|||.+.+.+.......+..+.+...
T Consensus 92 i~i~FP-----DPWpK~rH~krRl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 92 IYINFP-----DPWPKKRHHKRRLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp EEEES----------SGGGGGGSTT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCCcccchhhhhcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 999765 11112222223332 47889999999999999999887666677778888774
No 102
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=6e-14 Score=110.63 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=88.4
Q ss_pred ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCc
Q 025207 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 37 ~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.....+|.|+|||+|..+..+++. +|++.|+|+|.|++|++.|+++. .+.+|..+|+.+..++ ..+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~---~~~ 93 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPE---QPT 93 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCC---Ccc
Confidence 344567899999999999987666555 99999999999999999997653 3458999999988654 689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|++++|-.+...++ ...++..+...|.|||.+.+-.+..
T Consensus 94 dllfaNAvlqWlpd---------------------H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 94 DLLFANAVLQWLPD---------------------HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred chhhhhhhhhhccc---------------------cHHHHHHHHHhhCCCceEEEECCCc
Confidence 99999988776665 3577888999999999999966643
No 103
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.1e-12 Score=113.23 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=97.0
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchh
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~ 105 (256)
.+.+++.+. ..++++|||+|||+|.++..++.. +++ .|+|+|+++.++..++...... ..+..++.+|+.
T Consensus 111 ~~~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~----g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e 182 (322)
T PRK15068 111 WDRVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGA----GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE 182 (322)
T ss_pred HHHHHHhhC---CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH
Confidence 344444443 246799999999999998877765 443 6999999999987554432222 223478888887
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---C------
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---A------ 176 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~------ 176 (256)
+.. . +++||+|+|.-..++..+ ...+++++++.|+|||.+++.+.. .
T Consensus 183 ~lp--~-~~~FD~V~s~~vl~H~~d---------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~ 238 (322)
T PRK15068 183 QLP--A-LKAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLV 238 (322)
T ss_pred HCC--C-cCCcCEEEECChhhccCC---------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccC
Confidence 652 2 578999999655443322 467899999999999999875311 0
Q ss_pred --------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 --------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++..++++.||....+..
T Consensus 239 p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 239 PGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred chhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 0235778899999998766553
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=1.5e-12 Score=107.52 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=83.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+. +..+++++|+++.+++.+++++..++.. ..++.+|+.+.. ..+++||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CCCCCccE
Confidence 3678999999999999888887631 1579999999999999999998765443 378888887653 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.-+.+.++ ...+++.+.++|+|||.++++..
T Consensus 125 I~~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 125 VTIAFGLRNVPD---------------------IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEecccccCCC---------------------HHHHHHHHHHhccCCcEEEEEEe
Confidence 998644332221 46789999999999999988653
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.3e-13 Score=110.50 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|.|+|+|.++.+++..+ +|.++|+.+|+.++.++.|++|+...++.+ .+..+|+.+...+ ..||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~v---g~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAV---GPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---EDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhh---CCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---cccCE
Confidence 589999999999999999999865 466799999999999999999999988765 6777888776543 49999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+.+.|= ...+++.+.+.|||||.+++..|...+.......+++.||....
T Consensus 167 v~LDmp~--------------------------PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 167 VFLDLPD--------------------------PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEEcCCC--------------------------hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 9998761 35789999999999999999999888888999999999886543
No 106
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=3.4e-15 Score=106.76 Aligned_cols=98 Identities=22% Similarity=0.422 Sum_probs=62.2
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
||+|||+|.++..+... .+..+++|+|+|+.|++.+++++....... .....+..+.......++||+|++.-.+
T Consensus 1 LdiGcG~G~~~~~l~~~----~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE----LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH----C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999998877777 577899999999999998888888766433 3333333333222223699999998766
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.+.++ ...+++.+.++|+|||++
T Consensus 77 ~~l~~---------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLED---------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S----------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhh---------------------HHHHHHHHHHHcCCCCCC
Confidence 65422 678999999999999986
No 107
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=5.4e-13 Score=111.05 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=88.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-++|.+|||||||.|.+++.+|+. + +++|+|+++|+++.+.+++.+...|+.. ++...|..++ .+.||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~----y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-----~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEE----Y-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-----EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHH----c-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-----ccccc
Confidence 479999999999999999988887 4 7899999999999999999999999873 8888888776 35599
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
-|++---|-+ .+ ...+..++..+.++|+|||++++-+...
T Consensus 140 rIvSvgmfEh---------------vg----~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEH---------------VG----KENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHH---------------hC----cccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 9999433222 11 1237899999999999999999855433
No 108
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.51 E-value=3.2e-13 Score=115.68 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=98.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+..++-.|+.|.-|.+...+-+...+....+ .++.+|||+|||+|..+..++..+.+ +.+++++|+|++|++.+
T Consensus 30 lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a 104 (301)
T TIGR03438 30 LFEQICELPEYYPTRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKES 104 (301)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHH
Confidence 34556678888877766666555544333222 35689999999999999888887532 46899999999999999
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh
Q 025207 87 RKTLEAH--NVHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK 161 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (256)
++++... +++..++++|+.+...-... ....++++...+.+.+.. ....+++.+++
T Consensus 105 ~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~-------------------e~~~~L~~i~~ 165 (301)
T TIGR03438 105 AAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE-------------------EAVAFLRRIRQ 165 (301)
T ss_pred HHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHH-------------------HHHHHHHHHHH
Confidence 9987653 34447789998764321111 122344444444433322 25688999999
Q ss_pred ccccCeEEEEEEeC
Q 025207 162 LLSKRGWLYLVTLT 175 (256)
Q Consensus 162 ~LkpgG~l~~~~~~ 175 (256)
.|+|||.+++-...
T Consensus 166 ~L~pgG~~lig~d~ 179 (301)
T TIGR03438 166 LLGPGGGLLIGVDL 179 (301)
T ss_pred hcCCCCEEEEeccC
Confidence 99999999985543
No 109
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.51 E-value=5.4e-13 Score=110.08 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..++.++..+. ++++++++|+++++++.|++|++.+++.. +++.+|+.+.+.... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3678999999999999888887653 35699999999999999999999999864 899999988765431 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+++.+ ...+..+++.+.++|+|||.+++
T Consensus 144 ~fD~VfiDa~------------------------k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDAD------------------------KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999743 12256788999999999999886
No 110
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.51 E-value=4.8e-13 Score=110.29 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=101.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc-hhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG-LEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~-~~~~~~~~fD 117 (256)
.||.+|||.|+|+|.++..++..++ |.++|+.+|..++.++.|++|++.+++.. .+.+.|+... .....+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~---p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVG---PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhC---CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 6999999999999999999998874 67799999999999999999999999863 8999998643 2222246799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
.|+.+.|- ....+..+.+.| ++||+++...|...+.......+++.||..+.+
T Consensus 116 avfLDlp~--------------------------Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFLDLPD--------------------------PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEEESSS--------------------------GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeCCC--------------------------HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 99998762 235588888899 899999998998888888999999999876543
Q ss_pred E
Q 025207 197 V 197 (256)
Q Consensus 197 ~ 197 (256)
.
T Consensus 170 ~ 170 (247)
T PF08704_consen 170 V 170 (247)
T ss_dssp E
T ss_pred E
Confidence 3
No 111
>PRK04457 spermidine synthase; Provisional
Probab=99.50 E-value=1.7e-12 Score=108.81 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.++..++.. .|+.+++++|+++++++.|++++...+. ..+++.+|+.+.... .+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCE
Confidence 35789999999999988777776 6788999999999999999999865543 238899999887654 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHcCCc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~g~~ 192 (256)
|++|. |.....+ .......+++.+.+.|+|||++++...... ......+.+++. |.
T Consensus 140 I~~D~-~~~~~~~----------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~ 196 (262)
T PRK04457 140 ILVDG-FDGEGII----------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FE 196 (262)
T ss_pred EEEeC-CCCCCCc----------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cC
Confidence 99973 2111000 001136889999999999999998543222 223444555443 44
No 112
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.48 E-value=3.5e-12 Score=104.28 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++. .+. ++++++|+++.+++.++++.. .....+++.+|+.+.. +.+++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~----~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKS----APDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHh----cCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEE
Confidence 46899999999999998888776 343 689999999999999998875 2223478888887753 234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++.+.+.|+|||+++++..
T Consensus 111 ~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTD---------------------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCccc---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 98654432221 56789999999999999998653
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=5.3e-13 Score=107.86 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=87.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+.|.+|..++.+....++.+..+. ..++.+|||+|||+|.++..++.. .++.+++|+|+|+++++.|+++..
T Consensus 14 g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~----~~~~~v~giDiS~~~l~~A~~~~~- 88 (204)
T TIGR03587 14 GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRL----LPFKHIYGVEINEYAVEKAKAYLP- 88 (204)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHhhCC-
Confidence 3457777765544444333332111 136689999999999998877765 456799999999999999988642
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
...+..+|+.+ ++.+++||+|+++-.+.+.+.. ....+++++.+++ ++.+++.
T Consensus 89 ---~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl~p~-------------------~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 89 ---NINIIQGSLFD---PFKDNFFDLVLTKGVLIHINPD-------------------NLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---CCcEEEeeccC---CCCCCCEEEEEECChhhhCCHH-------------------HHHHHHHHHHhhc--CcEEEEE
Confidence 23677888766 2346799999998766544321 2567888888876 4555554
Q ss_pred E
Q 025207 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 142 e 142 (204)
T TIGR03587 142 E 142 (204)
T ss_pred E
Confidence 4
No 114
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=9.6e-13 Score=107.72 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +..++|+|+++++++.|++++...+. ...+..+|+.+.. ++||+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ 122 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDI 122 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCE
Confidence 46799999999999998877664 45899999999999999999887765 3488888887652 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|++.-.+.+.+. .....++..+.+++++++.+.+
T Consensus 123 ii~~~~l~~~~~-------------------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPA-------------------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCH-------------------HHHHHHHHHHHHHhCCCEEEEE
Confidence 998544322221 1246678888888887666554
No 115
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.47 E-value=9.5e-13 Score=102.02 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++. ........+.... ...+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP--PFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH---------TTSEEEEEECHTH--HCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh--hccccchhhHh
Confidence 57899999999999987776554 3499999999999987 1112222222222 22358999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++-.+.+.++ ...++..+.++|||||++++..+..
T Consensus 84 ~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLPD---------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSSH---------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhccc---------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9765544332 5789999999999999999988764
No 116
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.47 E-value=2.9e-12 Score=110.18 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|+.+++++|. +.+++.+++++...++.. +++.+|+.+... ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~----~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY----PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC----CCCCE
Confidence 46689999999999999888887 78899999997 899999999999888754 789999875421 23699
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-..+..++ .....+++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~-------------------~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCCh-------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 876432221111 2246789999999999999999764
No 117
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.4e-12 Score=106.27 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++.++++.+. ..++.+|||+|||+|.++..++... .+++++|+++++++.+++++...++.. ++..+|
T Consensus 64 p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 64 PYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 444555555543 2578999999999999987766652 279999999999999999999888764 889999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+..+. .++||+|+++.+. ..+...+.+.|+|||++++..
T Consensus 135 ~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWKGWPA--YAPFDRILVTAAA---------------------------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cccCCCc--CCCcCEEEEccCc---------------------------hhhhHHHHHhcCCCcEEEEEE
Confidence 7664332 3689999997542 233456778999999999854
No 118
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.47 E-value=5.9e-13 Score=112.53 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.++..++..+... .++.++|+|+|+.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 456889999999999988887764321 1357999999999999997753 1337888887764 34467999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+... ...+.++.++|||||+++++.+......++...+
T Consensus 157 ~~~~----------------------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 157 RIYA----------------------------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EecC----------------------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 8421 1225678899999999999888766555554443
No 119
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.47 E-value=7.1e-14 Score=113.45 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-------eEEEcchhhchhhhcCCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 115 (256)
+.+|||+|||+|.++..++++ +++|+|+|+++.+++.|++......... ++.+.++... .+.
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-----TGK 158 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-----ccc
Confidence 478999999999999999998 5699999999999999999855443322 3444444443 356
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
||.|+|--.+.|. .....++..+.++|||||++++.+....
T Consensus 159 fDaVvcsevleHV---------------------~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV---------------------KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cceeeeHHHHHHH---------------------hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999994222211 1257889999999999999999875443
No 120
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=3.9e-12 Score=103.23 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=86.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhch------hhhcC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGL------EKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~~~ 113 (256)
+++.+|||+|||+|.++..+++... +++.|+|+|+++ + +.. +..++++|+.+.. .++..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999988887742 456999999998 1 111 2378999987742 12345
Q ss_pred CCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 114 GLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 114 ~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
++||+|++++ |+... ... .... ........+++.+.++|+|||++++.........++...+.. .|.
T Consensus 116 ~~~D~V~S~~~~~~~g-~~~-----~d~~-----~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~ 183 (209)
T PRK11188 116 SKVQVVMSDMAPNMSG-TPA-----VDIP-----RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFT 183 (209)
T ss_pred CCCCEEecCCCCccCC-ChH-----HHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-Cce
Confidence 7899999987 44311 110 0000 001123578999999999999999976655555566655544 344
Q ss_pred EEEEE
Q 025207 193 ARIVV 197 (256)
Q Consensus 193 ~~~~~ 197 (256)
...+.
T Consensus 184 ~v~~~ 188 (209)
T PRK11188 184 KVKVR 188 (209)
T ss_pred EEEEE
Confidence 43333
No 121
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=1.3e-12 Score=115.16 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++.. +...++...|..+. +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~-----~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH-----YGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-----CCCCCEEE
Confidence 57899999999999998887765 25699999999999999999874 34456777776543 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++.+.++|||||++++...
T Consensus 234 s~~~~ehvg~-------------------~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 234 SVGMFEHVGP-------------------KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCchhhCCh-------------------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9765543321 2257889999999999999998654
No 122
>PRK06202 hypothetical protein; Provisional
Probab=99.46 E-value=1.2e-12 Score=108.09 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++..+.+.+++++|+|+|++++|++.|+++....++ ++...+..... ..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~l~--~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVSDELV--AEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--eEEEEeccccc--ccCCCccEEE
Confidence 4678999999999999888887665556677999999999999999887654443 34444433221 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++..+++.++.+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~-------------------~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAE-------------------VVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHH-------------------HHHHHHHHHHhcC
Confidence 998776655432 4567788888776
No 123
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.45 E-value=4.2e-12 Score=110.91 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=100.3
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
++++... .+.+++++.+.+. ..+.+|||+|||+|.+++.++... ..|+|+|+++++++.|++|+..+++
T Consensus 175 F~Q~N~~~~~~l~~~v~~~~~----~~~~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 175 FTQPNAAVNIKMLEWACEVTQ----GSKGDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred cccCCHHHHHHHHHHHHHHhh----cCCCcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4555554 5667777777653 123579999999999999888762 2899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhhc--------C------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 96 HA-DLINTDIASGLEKRL--------A------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~--------~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
.+ +++.+|+.+...... . ..||+|+.|||..- . ...+++.+.
T Consensus 245 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---------------------~--~~~~l~~l~ 301 (353)
T TIGR02143 245 DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---------------------L--DPDTCKLVQ 301 (353)
T ss_pred CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC---------------------C--cHHHHHHHH
Confidence 65 899999988664310 1 23899999999420 0 234444443
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++|+++.+.+...++..+. .+|....+.
T Consensus 302 ---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 302 ---AYERILYISCNPETLKANLEQLS--ETHRVERFA 333 (353)
T ss_pred ---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEE
Confidence 37888888766555555655544 236665554
No 124
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.45 E-value=6.9e-13 Score=121.93 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~----~~~~v~giD~~~~~i~~a~~~~ 90 (256)
..+|+|...++.+++.+......-....+.+|||+|||+|.+++.++..+.... -+..++|+|+++.+++.++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 468999777777777766543211011467999999999999999988764211 1368999999999999999998
Q ss_pred HHcC-CcceEEEcchhhchh---hhcCCCccEEEECCCCCCCCCcccccc---------c-------------------c
Q 025207 91 EAHN-VHADLINTDIASGLE---KRLAGLVDVMVVNPPYVPTPEDEVGRE---------G-------------------I 138 (256)
Q Consensus 91 ~~~~-~~~~~~~~d~~~~~~---~~~~~~fD~Ii~npP~~~~~~~~~~~~---------~-------------------~ 138 (256)
...+ ....+.+.|...... ....+.||+||+||||........... . +
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDP 163 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhh
Confidence 7765 223555555443211 111357999999999987543211000 0 0
Q ss_pred hhhhcCCCCcHHHHHHH-HHHHhhccccCeEEEEEEeCC----CCHHHHHHHHHHc
Q 025207 139 ASAWAGGENGRAVIDKI-LPSADKLLSKRGWLYLVTLTA----NDPSQICLQMMEK 189 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~ 189 (256)
...+ .|. + ..+..+ ++.+.++|++||++.++.|.. .....+++.+.+.
T Consensus 164 ~~~~-~g~-~-~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 164 IRKY-AGV-G-TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hccc-CCc-c-cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 0000 011 1 133444 467899999999999988753 2344566666544
No 125
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.45 E-value=3.2e-12 Score=107.56 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=90.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh-cCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR-LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~-~~~~fD 117 (256)
.+++|||+.|-||.+++.++.. ...+|+++|.|..+++.+++|+..|+++. +++..|+.+.+... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 6899999999999999987764 22379999999999999999999999763 89999999876543 357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-HHHHHHHHHcC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-SQICLQMMEKG 190 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~g 190 (256)
+||++||=+..... .. ...+.+++..+.++|+|||.+++++++.... +.+.+.+.+..
T Consensus 198 ~IIlDPPsF~k~~~-----~~----------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 198 LIILDPPSFAKSKF-----DL----------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp EEEE--SSEESSTC-----EH----------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHH-----HH----------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 99999996632211 11 1246788999999999999999888765543 34455554443
No 126
>PLN02476 O-methyltransferase
Probab=99.45 E-value=3e-12 Score=107.14 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..++.++..+. ++..++++|.++++++.|+++++..|+.. +++.+|+.+.++... .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~---~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP---ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3679999999999999999998753 35689999999999999999999999864 899999988876531 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+.+ ...+..+++.+.++|+|||.+++
T Consensus 194 ~FD~VFIDa~------------------------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 194 SYDFAFVDAD------------------------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 8999999754 12367889999999999999887
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.44 E-value=1e-12 Score=106.24 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. -+++.+|||||||+|+.+..++.+++ +...|+++|+++..++.|++++...+..+ .++.+|
T Consensus 58 P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg---~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVG---PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHS---TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred HHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcC---ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 455666666665 36899999999999999998888864 34589999999999999999999998865 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.....+. .+.||.|+++... ..+-..+.+.|++||++++..
T Consensus 132 g~~g~~~--~apfD~I~v~~a~---------------------------~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAV---------------------------PEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBB---------------------------SS--HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeecc---------------------------chHHHHHHHhcCCCcEEEEEE
Confidence 8877654 4789999996432 122344666799999999854
No 128
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.44 E-value=3e-12 Score=100.25 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=95.4
Q ss_pred CccccCCc--hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 16 EVYEPCDD--SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~--~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..++|+++ .+.+.+++.+ ++ .+.++||+.+|+|.++++++.. + ...++.+|.+..+++.+++|++.
T Consensus 20 ~~~RPT~drVREalFNil~~~~i------~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEI------EGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCcCCCchHHHHHHHHhcccccc------CCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHHHHHH
Confidence 47888887 6777777766 34 7899999999999999998876 2 34899999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCe
Q 025207 93 HNVHA--DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRG 167 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG 167 (256)
.+... .++..|....+..... +.||+|+.+|||...- -.....+.. -...|+|+|
T Consensus 89 l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l--------------------~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGL--------------------LDKELALLLLEENGWLKPGA 148 (187)
T ss_pred hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccch--------------------hhHHHHHHHHHhcCCcCCCc
Confidence 88543 8888898866544322 3499999999996211 001122222 356799999
Q ss_pred EEEEEEe
Q 025207 168 WLYLVTL 174 (256)
Q Consensus 168 ~l~~~~~ 174 (256)
.+++-..
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999543
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.44 E-value=6.7e-12 Score=118.74 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=98.1
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----------------------------
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------- 69 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----------------------------- 69 (256)
.|.+..+.++..++..- .+. .++..++|++||+|+++++++.+.....|
T Consensus 169 ~~Apl~etlAaa~l~~a-~w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 169 GEAPLKENLAAAILLRS-GWP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCCcHHHHHHHHHHc-CCC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 35556788888888643 331 35789999999999999999886432111
Q ss_pred ---------CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc
Q 025207 70 ---------GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI 138 (256)
Q Consensus 70 ---------~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~ 138 (256)
...++|+|+++.+++.|++|+..+|+.. .+.++|+.+...+...++||+|++||||......+.
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~----- 321 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP----- 321 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH-----
Confidence 2369999999999999999999999864 788999988644333357999999999986433210
Q ss_pred hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 139 ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.-...+.. +....+...+|+.+++++.
T Consensus 322 --------~l~~lY~~-lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 322 --------ALIALYSQ-LGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred --------HHHHHHHH-HHHHHHHhCCCCeEEEEeC
Confidence 00112333 3333344459999988764
No 130
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=1.1e-11 Score=102.38 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=83.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ++.++++|+++.+++.+++++...+...+++..++.+.... ..++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-cCCCccEEE
Confidence 46789999999999988776654 35899999999999999999887776557778887665322 347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...+++.+.++|+|||++++..+
T Consensus 120 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPD---------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCC---------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 9655443322 45778999999999999998654
No 131
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.2e-12 Score=114.70 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=118.5
Q ss_pred eeeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 10 LVSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 10 ~~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
.+-+.+ ++|++.+. .+.|++++++.+.. .++.++||+-||.|.+++.+|+. ..+|+|+|+++++++.|+
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQ 332 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHH
Confidence 355667 89999988 88889988888753 46789999999999999998865 348999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 88 KTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+|++.|++.+ .+..++..+...... ...+|.|+.|||= .|. -..+++.+.+ ++|
T Consensus 333 ~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR---------------------~G~--~~~~lk~l~~-~~p 388 (432)
T COG2265 333 ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR---------------------AGA--DREVLKQLAK-LKP 388 (432)
T ss_pred HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC---------------------CCC--CHHHHHHHHh-cCC
Confidence 9999999986 899999988876542 3579999999992 111 1255666554 689
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
..++++++.+.+...+ ...+.+.|+.+..+.
T Consensus 389 ~~IvYVSCNP~TlaRD-l~~L~~~gy~i~~v~ 419 (432)
T COG2265 389 KRIVYVSCNPATLARD-LAILASTGYEIERVQ 419 (432)
T ss_pred CcEEEEeCCHHHHHHH-HHHHHhCCeEEEEEE
Confidence 9999997665554444 445556777655443
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=1.5e-12 Score=105.86 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----------- 92 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----------- 92 (256)
...+++++.... ..++.+|||+|||.|..++.+|.. +.+|+|+|+|+.+++.+......
T Consensus 20 ~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~ 89 (213)
T TIGR03840 20 NPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT 89 (213)
T ss_pred CHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce
Confidence 455555443321 136689999999999998888875 67999999999999976332110
Q ss_pred --cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 93 --HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 --~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+...++.++|+.+.... ..+.||.|+..-.+.+.+. .....++..+.++|||||+++
T Consensus 90 ~~~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~-------------------~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 90 RYRAGNIEIFCGDFFALTAA-DLGPVDAVYDRAALIALPE-------------------EMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred eeecCceEEEEccCCCCCcc-cCCCcCEEEechhhccCCH-------------------HHHHHHHHHHHHHcCCCCeEE
Confidence 012337889998876432 1357999987554443332 235788999999999999866
Q ss_pred EEEe
Q 025207 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+++.
T Consensus 150 l~~~ 153 (213)
T TIGR03840 150 LITL 153 (213)
T ss_pred EEEE
Confidence 6543
No 133
>PRK00811 spermidine synthase; Provisional
Probab=99.43 E-value=7.4e-12 Score=106.21 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC------CcceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN------VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||++|||+|..+.++++. .+..+|+++|+++++++.|++.+...+ ...+++.+|+...... .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCC
Confidence 46789999999999987766543 234589999999999999999886532 1238899999887654 457
Q ss_pred CccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++. |+.. .. ......+++.+.+.|+|||++++..
T Consensus 150 ~yDvIi~D~~dp~~~--~~-----------------~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGP--AE-----------------GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCc--hh-----------------hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 899999974 3311 00 0124678899999999999998743
No 134
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.42 E-value=9e-13 Score=110.71 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccC-----CCceEEEEeCCHHHHHHHHHHHHH----c
Q 025207 24 SFALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEV-----PGVQYIATDINPYAVEVTRKTLEA----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~-----~~~~v~giD~~~~~i~~a~~~~~~----~ 93 (256)
...+.+.+++.+.. ....++.+|||+|||+|.-+..++..+.+.. ++.+|+|+|+|+.|++.|++.+.. .
T Consensus 80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~ 159 (264)
T smart00138 80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE 159 (264)
T ss_pred HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence 45555665554421 1123568999999999975443333332222 257899999999999999885410 0
Q ss_pred CC------------------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 94 NV------------------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 ~~------------------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
++ ...+.+.|+.+... ..++||+|+|.-.+++.+.
T Consensus 160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~------------------- 218 (264)
T smart00138 160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDE------------------- 218 (264)
T ss_pred cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCH-------------------
Confidence 11 12677888877533 3578999999533332221
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025207 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....++..+++.|+|||++++
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEE
Confidence 1256899999999999999998
No 135
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=4.8e-12 Score=106.57 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=81.0
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcc--eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.++++|+|+|||.|-++ +.++. +.+|+++++|+|+++++++.|++.+.. .++.. +|+.+|+.+.... .+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa---~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAK---HHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHH---hcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCc
Confidence 47899999999977443 22222 226888999999999999999999964 56543 8999999875322 3689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|++. ..+..... ....+++.+.+.|+|||.+++-.
T Consensus 197 DlVF~~-ALi~~dk~-------------------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKE-------------------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccc-------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence 999996 32222111 26789999999999999999844
No 136
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=5.3e-12 Score=101.80 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=94.8
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eE
Q 025207 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~ 99 (256)
+++..+...+... ..+++|||+|++.|..++.++..+.. +++++++|+++++++.|++|+++.|+.. .+
T Consensus 45 ~e~g~~L~~L~~~------~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 45 PETGALLRLLARL------SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred hhHHHHHHHHHHh------cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4455555555554 37899999999999999999998542 6699999999999999999999999876 56
Q ss_pred EE-cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 100 IN-TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 100 ~~-~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. +|..+.+.....++||+|+.+- +...+..+++.+.++|+|||.+++
T Consensus 116 ~~~gdal~~l~~~~~~~fDliFIDa------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 116 LLGGDALDVLSRLLDGSFDLVFIDA------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EecCcHHHHHHhccCCCccEEEEeC------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 66 5888887654568999999852 122367899999999999999997
No 137
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=6.6e-12 Score=103.17 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||||.++..++.. . +.+|+|+|+|++|++.|++.. ..+++|+.+. ++.+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEe
Confidence 4789999999999988777765 3 458999999999999987642 4567887765 455789999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+....+.++ ...++++++++|||.+
T Consensus 117 ~~~l~~~~d---------------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASDN---------------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccCC---------------------HHHHHHHHHHHhcCce
Confidence 766543322 5688999999999953
No 138
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=1.8e-12 Score=101.61 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=86.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c-eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|||+|||||..--.+ .+ -|.++|+++|.++.|-+.+.+.+.++... . .++.++..+. +...++++|.|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccccCCeeeEE
Confidence 356799999999863211 11 36789999999999999999999887533 3 5888988776 334579999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+........+ ..+.|.+..++|+|||+++++.+..........++
T Consensus 151 ~TlvLCSve~---------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~ 195 (252)
T KOG4300|consen 151 CTLVLCSVED---------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL 195 (252)
T ss_pred EEEEEeccCC---------------------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH
Confidence 9654432222 56889999999999999999887665444333333
No 139
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.41 E-value=1.6e-11 Score=101.07 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=77.2
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchh
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~ 105 (256)
.+.+++.+......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ...+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 344444443211246789999999999998877764 34799999999999999999887766 3378888843
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
. .+++||+|++.-.+.+.+.. ....++..+.+.+++++++.
T Consensus 123 ~-----~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 S-----LLGRFDTVVCLDVLIHYPQE-------------------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred h-----ccCCcCEEEEcchhhcCCHH-------------------HHHHHHHHHHhhcCCeEEEE
Confidence 2 24789999997655433221 14566777777665444433
No 140
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=1e-11 Score=101.85 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=81.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+|||+|||+|.++..+++. +..++++|+++.+++.+++++..++. ...+...|+.+.... .+++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEE
Confidence 4789999999999988777654 34699999999999999999888776 357888887765432 146899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+..+ ...++..+.+.|++||.+++...
T Consensus 118 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPD---------------------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCC---------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 9644332221 46789999999999999988654
No 141
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.6e-12 Score=102.15 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.++..+.+.+. .+++.+|||||||+|+.+..++++.+ +|+++|..+...+.|++|+...|..+ .+.++|.
T Consensus 59 ~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 59 HMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC------eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 34445555543 36899999999999999888888732 89999999999999999999999865 9999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....++ .+.||.|+..-- ...+-+.+.+-||+||++++..
T Consensus 130 ~~G~~~--~aPyD~I~Vtaa---------------------------a~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 130 SKGWPE--EAPYDRIIVTAA---------------------------APEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred ccCCCC--CCCcCEEEEeec---------------------------cCCCCHHHHHhcccCCEEEEEE
Confidence 887665 478999998422 1233445667799999999854
No 142
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.39 E-value=3.5e-12 Score=102.09 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=84.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+..++. ..+.+.+ +++..|+|+.||.|.+++.+++. .....|+++|++|.+++.+++|+
T Consensus 77 ~D~~kvyfs~rl~~Er--~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 77 VDLSKVYFSPRLSTER--RRIANLV-----KPGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp EETTTS---GGGHHHH--HHHHTC-------TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHHHH
T ss_pred EccceEEEccccHHHH--HHHHhcC-----CcceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHHHH
Confidence 4566666677654444 3444443 57899999999999999999985 44668999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. .++++|..+... .+.||.|++|.|.. ...++..+..++++||+
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~lp~~-------------------------~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP---EGKFDRVIMNLPES-------------------------SLEFLDAALSLLKEGGI 197 (200)
T ss_dssp HHTT-TTTEEEEES-GGG------TT-EEEEEE--TSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC---ccccCEEEECChHH-------------------------HHHHHHHHHHHhcCCcE
Confidence 9999876 789999988765 47899999998853 34678888899999998
Q ss_pred EEE
Q 025207 169 LYL 171 (256)
Q Consensus 169 l~~ 171 (256)
+.+
T Consensus 198 ihy 200 (200)
T PF02475_consen 198 IHY 200 (200)
T ss_dssp EEE
T ss_pred EEC
Confidence 753
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.39 E-value=6.4e-12 Score=98.73 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++... .+.+++++|+.+...+ +..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEEE
Confidence 46789999999999998888765 358999999999999999987542 1348999999876432 34699999
Q ss_pred ECCCCCC
Q 025207 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||..
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999963
No 144
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=3.5e-12 Score=116.05 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++... ......++++|+.....++.+++||+|+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999888875 2389999999999987654221 1112378888986433334457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
++.++++.++.+ ...+++++.++|||||++++..... .......+.
T Consensus 109 ~~~~l~~l~~~~-------------------~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 109 SNWLLMYLSDKE-------------------VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKV 169 (475)
T ss_pred hhhhHHhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHH
Confidence 998876554322 5788999999999999998854211 123456667
Q ss_pred HHHcCCc
Q 025207 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.++.
T Consensus 170 f~~~~~~ 176 (475)
T PLN02336 170 FKECHTR 176 (475)
T ss_pred HHHheec
Confidence 7776654
No 145
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.38 E-value=1.5e-11 Score=103.49 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=85.7
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccC--CCCEEEEecccccHH-HHHHHHHhcccCCCceEEEEeCCH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEH--HPVLCMEVGCGSGYV-ITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~--~~~~VLDlGcG~G~~-~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
.++++.-++.++.+.|... ..-++-|+.+.+...... ...++||||||..++ ++-.++ ..+|+++|+|+++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-----~~~W~fvaTdID~ 136 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-----LYGWSFVATDIDP 136 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-----HH--EEEEEES-H
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-----hcCCeEEEecCCH
Confidence 4556644899999999877 555666777766542211 257999999999986 222222 2389999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEcc----hhhchhhhcCCCccEEEECCCCCCCCCcccc---cc------------cc
Q 025207 81 YAVEVTRKTLEAH-NVHA--DLINTD----IASGLEKRLAGLVDVMVVNPPYVPTPEDEVG---RE------------GI 138 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~d----~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~---~~------------~~ 138 (256)
.+++.|++|+..| ++.. .++... +...... ..+.||+.+|||||+.+.+.... ++ .+
T Consensus 137 ~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p 215 (299)
T PF05971_consen 137 KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPP 215 (299)
T ss_dssp HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-----SS-------------------------
T ss_pred HHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecCCccccChhhhcccccccccccccccccccCc
Confidence 9999999999999 7765 444332 2222211 24689999999999987764221 01 12
Q ss_pred hhhhcCCCC-------cHHHHHHHHHHHhhccccCeEEEE--EEeCCCCHHHHHHHHHHcCCcEE
Q 025207 139 ASAWAGGEN-------GRAVIDKILPSADKLLSKRGWLYL--VTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
...+.|... ...+..+++++...+ +.. +.++ ..........+.+.+++.+....
T Consensus 216 ~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-~~~-v~WfTsmvgKkssL~~l~~~L~~~~~~~~ 278 (299)
T PF05971_consen 216 KLNFTGQSNELWCEGGEVAFVKRMIKESLQL-KDQ-VRWFTSMVGKKSSLKPLKKELKKLGATNY 278 (299)
T ss_dssp -------TTTTHHHHTHHHHHHHHHHHHHHH-GGG-EEEEEEEESSGGGHHHHHHHHHHTT-SEE
T ss_pred cccCCCCcceEEcCCccHHHHHHHHHHHHHh-CCC-cEEEeecccCcccHHHHHHHHHhcCCceE
Confidence 222222111 123566777766643 332 2222 22234456788888888876543
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.38 E-value=7.2e-12 Score=100.95 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=85.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
.+++|||+||++|+.++.++..+. ++++|+.+|++++..+.|+++++..|+.. +++.+|+.+.++... .++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred CCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 679999999999999999998753 36799999999999999999999998864 899999998776532 257
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+-. ...+..+++.+.++|+|||.+++
T Consensus 122 fD~VFiDa~------------------------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 122 FDFVFIDAD------------------------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEEEEST------------------------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEccc------------------------ccchhhHHHHHhhhccCCeEEEE
Confidence 999999632 11267788888999999999998
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.38 E-value=5e-12 Score=103.09 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCC-CccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAG-LVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~fD~Ii 120 (256)
...+||||||.|.+++.+|+. .|+..++|+|+....+..|.+.+.+.++ +..+++.|+...+..+.+. +.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 368999999999999998888 9999999999999999999999999999 6699999999988776555 999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.|.| .| |++.++. +..-+...+++.+.+.|+|||.+.+.+......++
T Consensus 125 i~FP---DP-------WpKkRH~---KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFP---DP-------WPKKRHH---KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECC---CC-------CCCcccc---ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9765 11 1222111 11224678999999999999999997754443344
No 148
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.38 E-value=1.4e-11 Score=97.64 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+..++.+. ++..+..-|||||||+|..+-.+ . .++...+|+|||+.|++.|.+.- +..+++.+|+.
T Consensus 35 em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL----~--~~Gh~wiGvDiSpsML~~a~~~e----~egdlil~DMG 103 (270)
T KOG1541|consen 35 EMAERALELLA-LPGPKSGLILDIGCGSGLSGSVL----S--DSGHQWIGVDISPSMLEQAVERE----LEGDLILCDMG 103 (270)
T ss_pred HHHHHHHHHhh-CCCCCCcEEEEeccCCCcchhee----c--cCCceEEeecCCHHHHHHHHHhh----hhcCeeeeecC
Confidence 34455555543 33346789999999999975333 2 24678999999999999998632 12479999998
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHH
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQIC 183 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~ 183 (256)
+.+ ++.+++||-+|+--.....-+.....+.+. ..+..|+..++.+|++|++.++-....+ +.+.+.
T Consensus 104 ~Gl-pfrpGtFDg~ISISAvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~ 172 (270)
T KOG1541|consen 104 EGL-PFRPGTFDGVISISAVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIM 172 (270)
T ss_pred CCC-CCCCCccceEEEeeeeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEecccchHHHHHHH
Confidence 665 556899999988433222222222222222 2367889999999999999998544332 233455
Q ss_pred HHHHHcCCc--EEEEEecCCCCccEEE
Q 025207 184 LQMMEKGYA--ARIVVQRSTEEENLHI 208 (256)
Q Consensus 184 ~~~~~~g~~--~~~~~~~~~~~~~~~l 208 (256)
......||. +.+-++...+...+++
T Consensus 173 ~~a~~aGF~GGlvVd~Pes~k~kK~yL 199 (270)
T KOG1541|consen 173 QQAMKAGFGGGLVVDWPESTKNKKYYL 199 (270)
T ss_pred HHHHhhccCCceeeecccccccceeEE
Confidence 555666764 3444444444434333
No 149
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.38 E-value=4.9e-11 Score=107.19 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.|.....+.+++..++.. ..+++.+|||+|+|.|.-+..++..+.. ...|++.|+++..++.+++|+.+.|
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~----~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFA----DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCcEEEECHHHHHHHHHhcc----CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34454544455555444421 1258899999999999999999998752 3489999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+.+ .+.+.|...... ...+.||.|++++|-.-..- .++.+...+.-. ..-......+|..+.++|||||++
T Consensus 163 ~~nv~v~~~D~~~~~~-~~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 163 VSNVALTHFDGRVFGA-ALPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred CCeEEEEeCchhhhhh-hchhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 876 777788765432 23467999999999653222 222222222110 001124567889999999999999
Q ss_pred EEEEeCCCC
Q 025207 170 YLVTLTAND 178 (256)
Q Consensus 170 ~~~~~~~~~ 178 (256)
+.++++...
T Consensus 239 VYSTCT~~~ 247 (470)
T PRK11933 239 VYSTCTLNR 247 (470)
T ss_pred EEECCCCCH
Confidence 999998663
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=99.38 E-value=1.5e-10 Score=99.81 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-----HcCC---cceEEEcchhhchhhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-----AHNV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-----~~~~---~~~~~~~d~~~~~~~~~ 112 (256)
..+++||++|||+|..+..+.+. .+..+|+++|+++++++.|++... .... ..+++.+|+.+.+.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~----~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY----ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-c
Confidence 46789999999999976555543 344689999999999999996321 1112 238899999987654 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~ 188 (256)
+++||+|+++.|-...... .......+++.+.+.|+|||+++....+.... ..+.+.+++
T Consensus 224 ~~~YDVIIvDl~DP~~~~~----------------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~ 287 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELL----------------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH 287 (374)
T ss_pred CCCccEEEEcCCCccccch----------------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence 5689999999753111000 01123678999999999999988754322222 234666777
Q ss_pred cCCcEEEEE
Q 025207 189 KGYAARIVV 197 (256)
Q Consensus 189 ~g~~~~~~~ 197 (256)
.++......
T Consensus 288 af~~v~~y~ 296 (374)
T PRK01581 288 AGLTVKSYH 296 (374)
T ss_pred hCCceEEEE
Confidence 777665444
No 151
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.37 E-value=1.2e-11 Score=97.12 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-.++||+|||.|.++..++..+. .++++|+++.+++.|+++.... -..++++.|+.+..+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd------~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P---~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD------RLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP---EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE------EEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhhC------ceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC---CCCeeEEE
Confidence 4558999999999999988877743 7999999999999999987632 134899999977654 48999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------CCHHHHHHHHHHcCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------NDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~g~ 191 (256)
+.=.++...+ .+.+..++..+...|+|||.+++-+... -..+.+...+.+.-.
T Consensus 112 ~SEVlYYL~~------------------~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 112 LSEVLYYLDD------------------AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EES-GGGSSS------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EehHhHcCCC------------------HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 8432222211 2336788999999999999999966321 123456666666533
Q ss_pred cEEEEE-ecCCCCccEEEEEEEe
Q 025207 192 AARIVV-QRSTEEENLHIIKFWR 213 (256)
Q Consensus 192 ~~~~~~-~~~~~~~~~~l~~~~~ 213 (256)
++..+. ......+...+..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEEEE-
T ss_pred heeEEEEcCCCCCCceEeeeecC
Confidence 443333 3444556666666655
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=1.1e-11 Score=97.17 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+... .++..+|+|++++.+..|.++ |+ .++++|+.+.+..+.+++||.||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-----k~v~g~GvEid~~~v~~cv~r----Gv--~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-----KQVDGYGVEIDPDNVAACVAR----GV--SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-----cCCeEEEEecCHHHHHHHHHc----CC--CEEECCHHHhHhhCCCCCccEEe
Confidence 47899999999999975444432 478999999999998887654 33 79999999999888899999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++-. .+....--.-+.++|+-|...+++.|++.
T Consensus 81 lsqt------------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 81 LSQT------------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred hHhH------------------------HHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9521 11112222234455777888888777665
No 153
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.37 E-value=2.6e-12 Score=112.12 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+++++.+. .+.+++++++.+.. .+.+|||+.||+|.+++.+|... .+|+|+|+++.+++.|++|+..|
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~----~~~~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDL----SKGDVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHT
T ss_pred CcCccCcHHHHHHHHHHHHHHhhc----CCCcEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHc
Confidence 567788877 88888888887642 23389999999999999988762 38999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhh--------------cCCCccEEEECCC
Q 025207 94 NVHA-DLINTDIASGLEKR--------------LAGLVDVMVVNPP 124 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~--------------~~~~fD~Ii~npP 124 (256)
++++ +++.++..+..... ....+|+|+.+||
T Consensus 242 ~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 242 GIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp T--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred CCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 9987 88887765542211 1236899999999
No 154
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=1.7e-11 Score=105.22 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+...+++.+. .+++.+|||+|||+|.++..+++... ....|+++|+++++++.|++++..++.+. .++.+|+
T Consensus 67 ~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~---~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 67 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred HHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 34444444432 24678999999999999988888642 23479999999999999999999888764 7888897
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... .++||+|+++.. ...+...+.+.|+|||++++..
T Consensus 141 ~~~~~~--~~~fD~Ii~~~g---------------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 141 YYGVPE--FAPYDVIFVTVG---------------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hhcccc--cCCccEEEECCc---------------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 765433 357999999532 2233455677899999988854
No 155
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.3e-11 Score=106.29 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=101.0
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----------------------------Cc
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------GV 71 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----------------------------~~ 71 (256)
|.+.-+.|+..|+..-. + .++..++|+-||+|+++|++|.+....-| .+
T Consensus 172 ~ApLketLAaAil~lag-w--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a 248 (381)
T COG0116 172 PAPLKETLAAAILLLAG-W--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA 248 (381)
T ss_pred CCCchHHHHHHHHHHcC-C--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence 34446777777766432 3 35579999999999999999987532222 11
Q ss_pred -------eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhh
Q 025207 72 -------QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAW 142 (256)
Q Consensus 72 -------~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~ 142 (256)
.++|+|+++.+++.|+.|....|+.. .|.++|+.....++ +.+|+|||||||...-..+.
T Consensus 249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~--------- 317 (381)
T COG0116 249 RRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEA--------- 317 (381)
T ss_pred hhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChh---------
Confidence 37799999999999999999999875 99999998876553 78999999999974332210
Q ss_pred cCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 143 AGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
--...+..+.+.+.+.++-.+..++++
T Consensus 318 ----~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 318 ----LVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ----hHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 001246677788888899889988865
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=6.3e-12 Score=102.51 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=75.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------------cceEEEcch
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------------HADLINTDI 104 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------------~~~~~~~d~ 104 (256)
.++.+|||+|||.|..++.++.. +++|+|+|+++.+++.+.. ++++ ..++.++|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc
Confidence 35689999999999999888875 6799999999999998642 2221 236788898
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... ..+.||+|+.---+.+.+. .....++..+.++|+|||++++++
T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~-------------------~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPE-------------------EMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCH-------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 876432 2257899986433332222 236788999999999999755533
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.35 E-value=6.6e-11 Score=99.87 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||+|.++..+++. .+..+++++|+++++++.+++++...+ . ..+++.+|....+.. .+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCC
Confidence 45679999999999987666554 334589999999999999999875432 1 227788888776543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+.. ......+++.+.+.|+|||++++...
T Consensus 146 yDvIi~D~~~~~~~~~-----------------~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----------------TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred ccEEEEeCCCCCCccc-----------------chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9999998764321110 01246788999999999999998644
No 158
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=5.7e-11 Score=94.95 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=83.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 114 (256)
.++.+|||+|||+|.++..++.... +.++|+++|+++.+ ... ...++++|+.+.. .....+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~---~~~~v~~vDis~~~--------~~~--~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVG---GKGRVIAVDLQPMK--------PIE--NVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhC---CCceEEEEeccccc--------cCC--CceEEEeeCCChhHHHHHHHHhCCC
Confidence 5789999999999999887777632 34589999999864 111 2367777875531 112346
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
+||+|+++++ +....... ..........++..+.++|+|||++++.........++...++.. |.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~------------~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~ 164 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDID------------HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FE 164 (188)
T ss_pred CccEEEcCCCCCCCCCcccc------------HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hc
Confidence 7999999753 21100000 000012246789999999999999999665555555666666554 44
Q ss_pred EEEE
Q 025207 193 ARIV 196 (256)
Q Consensus 193 ~~~~ 196 (256)
...+
T Consensus 165 ~~~~ 168 (188)
T TIGR00438 165 KVKV 168 (188)
T ss_pred eEEE
Confidence 3333
No 159
>PLN02366 spermidine synthase
Probab=99.34 E-value=8.9e-11 Score=100.34 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||.|..+.++++. .+-.+|+.+|+++.+++.|++.+... ++ ..+++.+|+...+....+++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 46799999999999987776653 22358999999999999999987653 22 23899999887765433568
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+-...+. .......+++.+.+.|+|||+++.-
T Consensus 166 yDvIi~D~~dp~~~~-----------------~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPA-----------------QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCch-----------------hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999999753211110 0112467899999999999999763
No 160
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.33 E-value=2.8e-12 Score=102.12 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=93.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++-+++||+|||||..+..+-.+. .+++|+|||++|+++|.+. ++-..+.+.++..+.....+.+||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchHHHHHHHHHHHhhhccCCcccchh
Confidence 346899999999999888777663 3799999999999998764 333366667776666545568999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~ 185 (256)
+--.+... -.++.++-....+|+|||.+.|+..... ....++..
T Consensus 194 AaDVl~Yl---------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 194 AADVLPYL---------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRAL 252 (287)
T ss_pred hhhHHHhh---------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHH
Confidence 84321111 1267778888999999999999764321 23578888
Q ss_pred HHHcCCcEEEEEe
Q 025207 186 MMEKGYAARIVVQ 198 (256)
Q Consensus 186 ~~~~g~~~~~~~~ 198 (256)
+...|++++.+..
T Consensus 253 l~~~Gl~~i~~~~ 265 (287)
T COG4976 253 LAASGLEVIAIED 265 (287)
T ss_pred HHhcCceEEEeec
Confidence 8999998876654
No 161
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.32 E-value=3.8e-11 Score=105.63 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=95.8
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+-+|.|... .+.+...+.+.+.. ..++.+|||++||+|.+++.++... +...|+++|+++.+++.+++|++.|
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~--~~~~~~vLDl~aGsG~~~l~~a~~~----~~~~V~a~Din~~Av~~a~~N~~~N 104 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGP--KLPRESVLDALSASGIRGIRYALET----GVEKVTLNDINPDAVELIKKNLELN 104 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHh--hcCCCEEEECCCcccHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 457888776 55555555555421 1134789999999999999988763 2347999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+++. .+.++|+...+.. ...||+|++||| .. ...++..+...+++||+++++
T Consensus 105 ~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~-Gs------------------------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 105 GLENEKVFNKDANALLHE--ERKFDVVDIDPF-GS------------------------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCceEEEhhhHHHHHhh--cCCCCEEEECCC-CC------------------------cHHHHHHHHHHhcCCCEEEEE
Confidence 9875 6999998776542 357999999986 21 235677766778999999996
Q ss_pred E
Q 025207 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 158 A 158 (382)
T PRK04338 158 A 158 (382)
T ss_pred e
Confidence 4
No 162
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.2e-11 Score=91.70 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=80.1
Q ss_pred ccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+.=+.|.-+++ +..++..|-+-.. .-++++++|+|||+|.+.+..+.. ..-.|.|+||+|++++.+.+|..
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~-----~~e~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMP-----KNESVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcC-----CCceEEeeecCHHHHHHHhhchH
Confidence 33345555544 3334444433332 248999999999999988665543 23479999999999999999999
Q ss_pred HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC
Q 025207 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~ 130 (256)
+..++.++.+.|+.+.... .+.||..+.||||.....
T Consensus 93 EfEvqidlLqcdildle~~--~g~fDtaviNppFGTk~~ 129 (185)
T KOG3420|consen 93 EFEVQIDLLQCDILDLELK--GGIFDTAVINPPFGTKKK 129 (185)
T ss_pred Hhhhhhheeeeeccchhcc--CCeEeeEEecCCCCcccc
Confidence 9888889999999887544 488999999999975443
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=6.6e-11 Score=97.89 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~~ 114 (256)
+.++|||+|+++|.-++.++..+. ++++++++|.+++..+.|++++...|+.. +++.+++.+.++... .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 678999999999999999988753 46799999999999999999999998754 899999988876642 26
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- ...+..+++.+.++|++||.+++
T Consensus 156 ~fD~iFiDad------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 8999998521 22367888888999999999886
No 164
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.9e-10 Score=98.47 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=115.8
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+..+.+.+...+..++..+++- +++.+|||+|++.|.-|..+++.+.. .+..|+++|+++.-++..++|+++
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p------~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDP------KPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCC------CCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHH
Confidence 3455666666566666655443 68999999999999999999998752 345679999999999999999999
Q ss_pred cCCcc-eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccC
Q 025207 93 HNVHA-DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~Lkpg 166 (256)
.|+.+ .+++.|.......... ++||.|++++|-.-.. .-++.++..|.-... -......+|....++||||
T Consensus 205 lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G---~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTG---VIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCCCceEEEecccccccccccccCcCcEEEECCCCCCCc---ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99987 7777776544332222 3599999999975432 223333333322111 1225678899999999999
Q ss_pred eEEEEEEeCCCCH--HH-HHHHHHHc
Q 025207 167 GWLYLVTLTANDP--SQ-ICLQMMEK 189 (256)
Q Consensus 167 G~l~~~~~~~~~~--~~-~~~~~~~~ 189 (256)
|++++++++.... ++ +...+.+.
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred CEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999876532 23 44444443
No 165
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.30 E-value=3.1e-11 Score=85.50 Aligned_cols=102 Identities=27% Similarity=0.448 Sum_probs=77.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+|+|||+|.++..++. .+..+++++|+++.+++.+++........ .++...|+.+... ...++||+|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999998766655 23569999999999999888644433333 3888888887653 2347899999999
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
++... ......+++.+.+.|++||.+++.
T Consensus 75 ~~~~~--------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL--------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh--------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87542 123678899999999999999875
No 166
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=1.1e-10 Score=93.86 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=118.4
Q ss_pred ccCCchHHHHHHHHHhhcccccCC--CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 19 EPCDDSFALVDALLADRINLVEHH--PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~--~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.++...+++..++++.+...+..+ +++++|||+|.|..++.+|.. +|+.+|+-+|....-+...+....+.+++
T Consensus 42 ~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 42 AIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHHHHHHHHHHHhCCC
Confidence 455567888888888876554434 699999999999999999976 78889999999999999999999999998
Q ss_pred c-eEEEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE--
Q 025207 97 A-DLINTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV-- 172 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-- 172 (256)
+ +++++++.+.... .. ||+|++ ++...+..+.+-+..++|+||.+++.
T Consensus 118 nv~i~~~RaE~~~~~---~~~~D~vts-------------------------RAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 118 NVEIVHGRAEEFGQE---KKQYDVVTS-------------------------RAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred CeEEehhhHhhcccc---cccCcEEEe-------------------------ehccchHHHHHHHHHhcccCCcchhhhH
Confidence 6 9999999888543 23 999998 22334778899999999999987532
Q ss_pred EeCCCCHHHHHHHHHHcCCcEEEEEecCCC
Q 025207 173 TLTANDPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
........+....+...++....+.....+
T Consensus 170 ~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 170 LAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred HhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 223444566777777778877766655443
No 167
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=1e-10 Score=93.94 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=58.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. .+..++|+|+++++++.++++ + .+++.+|+.+...++.+++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~----~--~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR----G--VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc----C--CeEEEEEhhhcccccCCCCcCEEEE
Confidence 5689999999999987666543 245789999999999887642 2 3678888866433344578999999
Q ss_pred CCCCCCCCC
Q 025207 122 NPPYVPTPE 130 (256)
Q Consensus 122 npP~~~~~~ 130 (256)
+.++.+..+
T Consensus 82 ~~~l~~~~d 90 (194)
T TIGR02081 82 SQTLQATRN 90 (194)
T ss_pred hhHhHcCcC
Confidence 987765443
No 168
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=2.9e-10 Score=95.07 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=92.9
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc--chhh
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT--DIAS 106 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~--d~~~ 106 (256)
+.+.+.+. +-.+++|||||||+|..+..++.. ++. .|+|+|.++..+-..+-.-...+.+..+... .+.+
T Consensus 105 ~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~----GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~ 176 (315)
T PF08003_consen 105 DRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR----GAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED 176 (315)
T ss_pred HHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc----CCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh
Confidence 44444443 358899999999999998776665 433 7999999988765433322223333323332 2333
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------------
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------------ 174 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------ 174 (256)
. +. .+.||+|+|--.++|..+ ....|.++.+.|++||.+++-+-
T Consensus 177 L-p~--~~~FDtVF~MGVLYHrr~---------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 177 L-PN--LGAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred c-cc--cCCcCEEEEeeehhccCC---------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc
Confidence 2 22 478999999777776554 35778999999999999997441
Q ss_pred CCC-----------CHHHHHHHHHHcCCcEEEEEe
Q 025207 175 TAN-----------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 175 ~~~-----------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
..+ ....+..++++.||+...+..
T Consensus 233 ~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 233 EDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 111 346889999999998766553
No 169
>PRK03612 spermidine synthase; Provisional
Probab=99.28 E-value=9.1e-11 Score=107.53 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=91.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---c--CC---cceEEEcchhhchhhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---H--NV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~--~~---~~~~~~~d~~~~~~~~~ 112 (256)
+++++|||+|||+|..+.++++. .+..+++++|+++++++.++++... + .. ..+++.+|..+.... .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-C
Confidence 46789999999999987666653 2226999999999999999985321 1 12 237899999887644 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~ 188 (256)
+++||+|++|+|....+... ......+++.+.+.|+|||++++...+.. ...++.+.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~----------------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALG----------------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CCCCCEEEEeCCCCCCcchh----------------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 47899999998753211110 01135788999999999999988543211 22356777788
Q ss_pred cCCc
Q 025207 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
.||.
T Consensus 435 ~gf~ 438 (521)
T PRK03612 435 AGLA 438 (521)
T ss_pred cCCE
Confidence 8883
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=97.44 Aligned_cols=131 Identities=13% Similarity=0.214 Sum_probs=103.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
.+.+.+|||.|.|-|..++++++. ++ .|+.+|.+|..++.|.-|--..++. .+++.+|+.+....+.+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 357899999999999999888775 45 8999999999999987664333322 2899999999999988999
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMME 188 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~ 188 (256)
||+||-+||=+.... .-....+-++++++|||||+++=..... +....+.+.+.+
T Consensus 206 fDaIiHDPPRfS~Ag------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 206 FDAIIHDPPRFSLAG------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred cceEeeCCCccchhh------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 999999999654332 1235678899999999999988644322 345688899999
Q ss_pred cCCcEE
Q 025207 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.||...
T Consensus 268 vGF~~v 273 (287)
T COG2521 268 VGFEVV 273 (287)
T ss_pred cCceee
Confidence 999843
No 171
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=4.5e-10 Score=96.33 Aligned_cols=144 Identities=20% Similarity=0.227 Sum_probs=108.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+.-++. ..+++.. .+|.+|+|+.+|.|.+++.+|+. . ...|+++|+||.+++.+++|+
T Consensus 164 vD~~Kv~Fsprl~~ER--~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~----g-~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 164 VDVAKVYFSPRLSTER--ARVAELV-----KEGETVLDMFAGVGPFSIPIAKK----G-RPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred EchHHeEECCCchHHH--HHHHhhh-----cCCCEEEEccCCcccchhhhhhc----C-CceEEEEecCHHHHHHHHHHH
Confidence 5556667777655443 3444443 46999999999999999999986 2 234999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. ..+++|..+..... +.+|-|+.+.|.. ...++....+.+++||+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~p~~-------------------------a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL--GVADRIIMGLPKS-------------------------AHEFLPLALELLKDGGI 284 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc--ccCCEEEeCCCCc-------------------------chhhHHHHHHHhhcCcE
Confidence 9999876 79999999986553 7899999988752 35678888889999999
Q ss_pred EEEEEeCCCCH------HHHHHHHHHcCCcE
Q 025207 169 LYLVTLTANDP------SQICLQMMEKGYAA 193 (256)
Q Consensus 169 l~~~~~~~~~~------~~~~~~~~~~g~~~ 193 (256)
+.+-....... ..+.......|++.
T Consensus 285 iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 285 IHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred EEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 98855433322 34555555555543
No 172
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.24 E-value=2e-10 Score=90.50 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHhhc---ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C
Q 025207 21 CDDSFALVDALLADRI---NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V 95 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~---~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~ 95 (256)
++-+..+++++..... ......+++|||+|||+|..++.++.. .+..+|+.+|.++ .++.++.|++.|+ .
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRRNIELNGSLL 95 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHHHHHTT----
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHHHHHhccccc
Confidence 3347777787777421 111357899999999999999998887 3456999999999 9999999999987 2
Q ss_pred c--ceEEEcchhhch-hh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 96 H--ADLINTDIASGL-EK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~--~~~~~~d~~~~~-~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ..+...|+.+.. .. ....+||+|++.-..+.. .....++..+.++|+++|.+++
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------------------~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------------------ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------------------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchH---------------------HHHHHHHHHHHHHhCCCCEEEE
Confidence 2 266666765533 12 234689999984333311 1267889999999999999777
Q ss_pred EEeCC
Q 025207 172 VTLTA 176 (256)
Q Consensus 172 ~~~~~ 176 (256)
.....
T Consensus 155 ~~~~R 159 (173)
T PF10294_consen 155 AYKRR 159 (173)
T ss_dssp EEE-S
T ss_pred EeCEe
Confidence 65533
No 173
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.24 E-value=4e-10 Score=89.21 Aligned_cols=143 Identities=18% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025207 21 CDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
++..+++..++++.+..++ +..+.+++|+|+|.|..++.++.. .|+.+++.+|.+..-+...+.-+...++++
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 3335666667877775433 223338999999999999999998 788999999999999999999999999986
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++++.+ .....+||+|++- +...+..+++.+..+|++||++++.- +..
T Consensus 101 ~v~~~R~E~---~~~~~~fd~v~aR-------------------------Av~~l~~l~~~~~~~l~~~G~~l~~K-G~~ 151 (184)
T PF02527_consen 101 EVINGRAEE---PEYRESFDVVTAR-------------------------AVAPLDKLLELARPLLKPGGRLLAYK-GPD 151 (184)
T ss_dssp EEEES-HHH---TTTTT-EEEEEEE-------------------------SSSSHHHHHHHHGGGEEEEEEEEEEE-SS-
T ss_pred EEEEeeecc---cccCCCccEEEee-------------------------hhcCHHHHHHHHHHhcCCCCEEEEEc-CCC
Confidence 999999988 2235789999992 11226788999999999999999853 344
Q ss_pred CHHHHH---HHHHHcCCcEEEE
Q 025207 178 DPSQIC---LQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~---~~~~~~g~~~~~~ 196 (256)
..+++. ..+...+++...+
T Consensus 152 ~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 152 AEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -HHHHHTHHHHHHCCCEEEEEE
T ss_pred hHHHHHHHHhHHHHhCCEEeee
Confidence 444443 3333344444333
No 174
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.23 E-value=1.3e-10 Score=106.04 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=102.8
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
...+..+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++.+ .++..|+......+.++++|.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE
Confidence 356789999999999999999888 899999999999999999888888888876 777777655444455688999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
|+.|.| .|.+ +.++.+.++ +...++..+.++|+|||.+.+.+.......+....+.+.+ |+
T Consensus 421 i~i~FP---DPWp--Kkrh~krRl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 421 IYILFP---DPWI--KNKQKKKRI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred EEEECC---CCCC--CCCCccccc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 999765 1111 111222222 3578899999999999999998766665666666766654 44
No 175
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=4.3e-11 Score=96.15 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=86.7
Q ss_pred HHHHhhccccc---CCCCEEEEecccccHHHHHHHHHhcccCCC--ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 30 ALLADRINLVE---HHPVLCMEVGCGSGYVITSLALMLGQEVPG--VQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 30 ~l~~~~~~~~~---~~~~~VLDlGcG~G~~~~~la~~l~~~~~~--~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
|++.+++.+.+ +...+|||+|||.|.....+.+. .++ ..++++|.+|.+++..+++...+.........|+
T Consensus 56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~----~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKT----SPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHhhHHhhCccccChhhheeeccCCCcccchhhhc----CCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence 55555555432 33348999999999987777665 444 8999999999999999988765543334445555
Q ss_pred hhch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.... .+...+++|+|++-..+...+.. -+...++.+.++|||||.+++-.
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pe-------------------k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPE-------------------KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChH-------------------HHHHHHHHHHHHhCCCcEEEEee
Confidence 4432 23456899999886555443332 26889999999999999999854
No 176
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.20 E-value=1.2e-10 Score=105.87 Aligned_cols=168 Identities=18% Similarity=0.169 Sum_probs=113.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+|+..++++++.+.. .+..+|+|+.||+|.+.+.....+++..-...++|.|+++.....|+.|+-.++
T Consensus 166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 5789998877777776655 245699999999999999999888653313689999999999999999999998
Q ss_pred Ccc--eEEEcchhhchhh---hcCCCccEEEECCCCCCCCCcccc-cccc-h-hhhcCCCC-cHHHHHHHHHHHhhcccc
Q 025207 95 VHA--DLINTDIASGLEK---RLAGLVDVMVVNPPYVPTPEDEVG-REGI-A-SAWAGGEN-GRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ~~~--~~~~~d~~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~-~~~~-~-~~~~~~~~-~~~~~~~~l~~~~~~Lkp 165 (256)
++. ....+|-...... ...+.||.|++||||......... .... . ....+... .......+++.+...|+|
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 873 5555554333211 134679999999999743333221 1111 1 11112111 111226778889999999
Q ss_pred CeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025207 166 RGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
||++.++.+... ....+++.+...
T Consensus 319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 319 GGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred CceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 998887766432 245677777663
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.18 E-value=2.1e-10 Score=97.53 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d 103 (256)
.+++.+.+... ..++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++...+. . .+++++|
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34455555442 247789999999999999888775 34799999999999999999887653 2 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
+.+... ..||.|++|+||+...
T Consensus 94 al~~~~----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPYQISS 115 (294)
T ss_pred Hhhhcc----cccCEEEecCCcccCc
Confidence 977532 4689999999998654
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.18 E-value=1.9e-10 Score=96.45 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++... -+.+++++|+
T Consensus 15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~ 84 (258)
T PRK14896 15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEecc
Confidence 344455555442 246799999999999999888876 248999999999999999887541 1348999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+... ..||.|++|+||+..
T Consensus 85 ~~~~~----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 LKVDL----PEFNKVVSNLPYQIS 104 (258)
T ss_pred ccCCc----hhceEEEEcCCcccC
Confidence 77532 358999999999753
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.17 E-value=1.7e-10 Score=97.45 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. . .+|+|+|+++.+++.+++++.. ...+++++|+.
T Consensus 29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~----~--~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLER----A--AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHh----C--CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 34555665543 247789999999999999888876 3 2899999999999999887642 23489999988
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ +-.+|.|++||||+.
T Consensus 98 ~~~~~--~~~~~~vv~NlPY~i 117 (272)
T PRK00274 98 KVDLS--ELQPLKVVANLPYNI 117 (272)
T ss_pred cCCHH--HcCcceEEEeCCccc
Confidence 76322 112699999999975
No 180
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=3.5e-10 Score=92.13 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH------------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE------------ 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~------------ 91 (256)
...|++++.... ..++.+||++|||.|.....++.. |.+|+|+|+|+.+++.+.+...
T Consensus 29 np~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~ 98 (226)
T PRK13256 29 NEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYK 98 (226)
T ss_pred CHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccc
Confidence 345555544321 235689999999999998888876 6689999999999998755210
Q ss_pred -HcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 92 -AHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
..+...++.++|+++.... ...++||+|+----|...+. ....++.+.+.++|+|||.+
T Consensus 99 ~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-------------------~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 99 LYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-------------------DLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred eeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-------------------HHHHHHHHHHHHHhCCCcEE
Confidence 0123448999999987421 12368999987544444433 23678899999999999998
Q ss_pred EEEEe
Q 025207 170 YLVTL 174 (256)
Q Consensus 170 ~~~~~ 174 (256)
++++.
T Consensus 160 lll~~ 164 (226)
T PRK13256 160 LLLVM 164 (226)
T ss_pred EEEEE
Confidence 88764
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.16 E-value=4.6e-10 Score=91.46 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cC------C------cceEEEcchhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HN------V------HADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~------~------~~~~~~~d~~~~ 107 (256)
.++.+||.+|||.|.-...++.. |.+|+|+|+++.+++.+.+.... .. . ..++.++|+++.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 56789999999999998888876 67999999999999988432111 10 0 126889999986
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|+-.--+...+... ..++.+.+.++|+|||.+++++-.+.
T Consensus 110 ~~~-~~g~fD~iyDr~~l~Alpp~~-------------------R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPE-DVGKFDLIYDRTFLCALPPEM-------------------RERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGS-CHHSEEEEEECSSTTTS-GGG-------------------HHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred Chh-hcCCceEEEEecccccCCHHH-------------------HHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 543 235899998865555444322 67889999999999999555442111
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025207 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++.+.+. .+|+++.+.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEe
Confidence 2456666665 567665544
No 182
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.15 E-value=2.2e-10 Score=88.37 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=75.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCC-ccEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGL-VDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~-fD~Ii 120 (256)
..|+|++||.|..++.+|+.. .+|+++|+++..++.|+.|+...|+.. .++++|+.+......... +|+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999972 389999999999999999999998754 999999999876543233 89999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
++|||.-..=.......... ... + ....++++.+.+ +.++ +++..|......++.+...+
T Consensus 75 lSPPWGGp~Y~~~~~fdL~~-~~~-p---~~~~~l~~~~~~-~t~n--v~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDVFDLEK-SMQ-P---FNLEDLLKAARK-ITPN--VVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp E---BSSGGGGGSSSB-TTT-SSS-S-----HHHHHHHHHH-H-S---EEEEEETTB-HHHHHHT---
T ss_pred ECCCCCCccccccCccCHHH-ccC-C---CCHHHHHHHHHh-hCCC--EEEEeCCCCCHHHHHHHhcc
Confidence 99999742221111111100 000 1 013455555443 3344 33334767667777666543
No 183
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.12 E-value=2.9e-09 Score=90.30 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=111.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.....+..++..++. +.++.+|||+|+|.|.-+..++..+.. .+.+++.|+++..++..+.++++.|
T Consensus 64 ~G~~~vQd~sS~l~~~~L~------~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD------PQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT------TTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcEEeccccccccccccc------ccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 3444444334444444443 358899999999999999999988652 4699999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhcc----cc
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLL----SK 165 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~L----kp 165 (256)
..+ .+...|............||.|+.++|-.... ...+.+...|.-.... ......++..+.+++ ||
T Consensus 135 ~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G---~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 135 VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLG---TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp -SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGG---GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred CceEEEEeeccccccccccccccchhhcCCCccchh---hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 877 66668887775444445799999999975432 2223333333211111 125667899999999 99
Q ss_pred CeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 166 RGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
||++++++++.. ....+...+++.
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 999999998543 223344445544
No 184
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.12 E-value=1.9e-09 Score=85.82 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
..-+.+.+.+.+. ..+.+|||||||||.-...++.. .|..+..-+|.++......+..+...+.++ ..+.
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~----lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQA----LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHH----CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 3445566666553 23346999999999998888888 788899999999999888888888877765 6667
Q ss_pred cchhhchhhh------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 102 TDIASGLEKR------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|+.+...+. ..++||.|+|.=-.+.. .+.....+++.+.++|++||.+++..|
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~-------------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLHIS-------------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHHhc-------------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7777663332 24689999982111111 123467889999999999999998664
No 185
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.10 E-value=2.5e-09 Score=93.74 Aligned_cols=131 Identities=22% Similarity=0.206 Sum_probs=93.7
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+-+|-|... ..+-+-.+...........+.+|||+.||+|..++.++.... .-..|+++|+++++++.+++|++
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~---ga~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE---GVREVFANDINPKAVESIKNNVE 90 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678888766 222122111111110011246899999999999999887631 11379999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.|++.. .+.+.|+...+... ..+||+|..+| |.. ...++..+.+.+++||.++
T Consensus 91 ~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP-fGs------------------------~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 91 YNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP-FGT------------------------PAPFVDSAIQASAERGLLL 144 (374)
T ss_pred HhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-CCC------------------------cHHHHHHHHHhcccCCEEE
Confidence 998864 89999998876542 35799999998 431 2367888888999999999
Q ss_pred EEE
Q 025207 171 LVT 173 (256)
Q Consensus 171 ~~~ 173 (256)
+..
T Consensus 145 vTa 147 (374)
T TIGR00308 145 VTA 147 (374)
T ss_pred EEe
Confidence 963
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.05 E-value=8.6e-10 Score=98.84 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.|+|+|||+|.+...+++...+.....+|+|+|.++.++..+++.+..+++.. +++++|+.+...+ .++|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 6899999999999887776664333345689999999999988888888888854 9999999998654 5999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+-. . -.+.+. ......+....+.|||+|+++
T Consensus 264 SEl--------------L-Gsfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SEL--------------L-GSFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E------------------BTTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred Eec--------------c-CCcccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 931 0 011111 135677888899999999887
No 187
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=99.04 E-value=3.2e-10 Score=90.49 Aligned_cols=123 Identities=13% Similarity=0.213 Sum_probs=87.0
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
.|..+..++.++++.|-.. ..-++-.+.+.+.... .+++.++||||+|..++ .-+++.+..+++++|.|+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCI----YPliG~~eYgwrfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCI----YPLIGVHEYGWRFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccc----cccccceeecceeecCccCH
Confidence 5677788999999988655 5555555555554321 25778999999999985 34555556689999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEc-chhhchhhh--cCCCccEEEECCCCCCCCCc
Q 025207 81 YAVEVTRKTLEAH-NVHA--DLINT-DIASGLEKR--LAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~-d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~ 131 (256)
.+++.|+.++..| ++.. ++... |-....... ..+.||+++|||||+.+..+
T Consensus 113 ~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~d 169 (292)
T COG3129 113 QSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAAD 169 (292)
T ss_pred HHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhHHH
Confidence 9999999999988 5543 33222 221212111 25789999999999876653
No 188
>PLN02823 spermine synthase
Probab=99.04 E-value=5.9e-09 Score=90.11 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=80.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||.+|+|.|..+.++.+. .+..+++++|+++++++.|++.+..++ ...+++.+|....+.. .+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~----~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH----KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCC
Confidence 35789999999999987666553 334589999999999999999876542 1238999999988744 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+- +..... .. .-....+++ .+.+.|+|||++++-.
T Consensus 177 yDvIi~D~~d-p~~~~~------~~--------~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLAD-PVEGGP------CY--------QLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCC-ccccCc------ch--------hhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999998531 100000 00 011346777 7899999999988743
No 189
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=86.01 Aligned_cols=125 Identities=19% Similarity=0.327 Sum_probs=81.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-------------------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH------------------- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~------------------- 96 (256)
..++.+|||||-+|.+++.+++..+. ..|.|+||++..|+.|++++.... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 37899999999999999999998653 369999999999999999875321 11
Q ss_pred -----------c--------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025207 97 -----------A--------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 97 -----------~--------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+ .+...|+. ......||+|+|--. .+|.+.-| |-+-+..++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlcLSi----------TkWIHLNw-----gD~GL~~ff~ 193 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILCLSI----------TKWIHLNW-----GDDGLRRFFR 193 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh----hhccccccEEEEEEe----------eeeEeccc-----ccHHHHHHHH
Confidence 0 01111122 122457999988211 12222222 1223789999
Q ss_pred HHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 158 SADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+.++|.|||++++---++.......+..+.
T Consensus 194 kis~ll~pgGiLvvEPQpWksY~kaar~~e~ 224 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEPQPWKSYKKAARRSEK 224 (288)
T ss_pred HHHHhhCcCcEEEEcCCchHHHHHHHHHHHH
Confidence 9999999999999933244444444444433
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.00 E-value=7.8e-09 Score=86.47 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=65.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. . ..++++|+++.+++.++++... .-+.+++++|+.
T Consensus 16 ~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~----~--~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~ 85 (253)
T TIGR00755 16 SVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKR----A--KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHh----C--CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchh
Confidence 34455555442 246789999999999999888776 3 2699999999999999887643 123378999987
Q ss_pred hchhhhcCCCcc---EEEECCCCC
Q 025207 106 SGLEKRLAGLVD---VMVVNPPYV 126 (256)
Q Consensus 106 ~~~~~~~~~~fD---~Ii~npP~~ 126 (256)
+...+ .+| +|++|+||+
T Consensus 86 ~~~~~----~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP----DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh----HcCCcceEEEcCChh
Confidence 76432 455 999999986
No 191
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.99 E-value=3.2e-09 Score=85.01 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=89.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...++||.|+|.|.++-.+ |...+ + +|..+|..+..++.|++.+....... ++.+..+.++.++ +++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~l---Ll~~f-~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGL---LLPVF-D-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHT---CCCC--S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEE
T ss_pred CcceEEecccccchhHHHH---HHHhc-C-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEE
Confidence 5689999999999986433 22222 2 89999999999999997665422222 7888888877654 47999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
+.-...+.++. .+-.+|++|...|+|+|.+++-.... +......++
T Consensus 128 ~QW~lghLTD~-------------------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 128 IQWCLGHLTDE-------------------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFREL 188 (218)
T ss_dssp EES-GGGS-HH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHH
T ss_pred ehHhhccCCHH-------------------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHH
Confidence 96554444432 36789999999999999999854311 124588999
Q ss_pred HHHcCCcEEEEEecCCCCc
Q 025207 186 MMEKGYAARIVVQRSTEEE 204 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~~~~~ 204 (256)
+++.|+.+.....+..-+.
T Consensus 189 F~~AGl~~v~~~~Q~~fP~ 207 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQKGFPK 207 (218)
T ss_dssp HHHCT-EEEEEEE-TT--T
T ss_pred HHHcCCEEEEeccccCCCc
Confidence 9999999877665544433
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-09 Score=91.98 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.|||+|||+|.+++..|+. + ..+|+|+|-+.- ++.|.+.+..|++.. +++.+.+.+...+ .+++|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC--ccceeEE
Confidence 7899999999999999888887 3 348999997655 499999999999876 8899988887433 5899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++- |....+. -...++.++..--+.|+|||.++
T Consensus 132 vSE--------------WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSE--------------WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eeh--------------hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 992 2221111 01124444555567899999987
No 193
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.7e-08 Score=82.67 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=97.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.|+.+|||-|+|+|.++.++++.++ |..+++.+|......+.|.+-++.+++.. .+.+.|+....-......+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~---ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA---PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC---cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 6899999999999999999999874 66799999999999999999999999865 777778765432222567999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|+.+.|- ....+..+.+.||.+| +++-.++...+.....+.+.++||..+...
T Consensus 181 VFLDlPa--------------------------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 181 VFLDLPA--------------------------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEEcCCC--------------------------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9998762 1233445556788776 666555555555667788888898765544
Q ss_pred e
Q 025207 198 Q 198 (256)
Q Consensus 198 ~ 198 (256)
.
T Consensus 235 E 235 (314)
T KOG2915|consen 235 E 235 (314)
T ss_pred E
Confidence 3
No 194
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=2e-08 Score=80.56 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
.++++||+|.=||.-++..|..+. ++++|+++|++++.++.+.+..+..|+.. ++++++..+.+.+. ..++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 679999999999999999998875 36799999999999999998888888754 89999988776543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+++.+- ....+..+.+.+.+++++||++++
T Consensus 150 fDfaFvDa------------------------dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 150 FDFAFVDA------------------------DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeEEEEcc------------------------chHHHHHHHHHHHhhcccccEEEE
Confidence 99999851 123355889999999999999998
No 195
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.5e-09 Score=92.53 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=97.0
Q ss_pred eeccCCc-cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEV-YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~-~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.+.|+. |+-.+. .+.++..+-+.... ..++.++|++||||.+++++++.. ..|+|+|+++.+++.|++
T Consensus 353 F~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 353 FRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEK 423 (534)
T ss_pred EEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhh
Confidence 4455543 444433 67777777666542 466999999999999998888752 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCC---Ccc-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAG---LVD-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~---~fD-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|...||+.+ +|+++..++..+..... +-+ ++|.+||=. |+ ...++..+..+-
T Consensus 424 nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~---------------------Gl--h~~~ik~l~~~~ 480 (534)
T KOG2187|consen 424 NAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK---------------------GL--HMKVIKALRAYK 480 (534)
T ss_pred cchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcc---------------------cc--cHHHHHHHHhcc
Confidence 999999988 99999777776554332 445 778888831 11 346677777665
Q ss_pred ccCeEEEEEEeCCC
Q 025207 164 SKRGWLYLVTLTAN 177 (256)
Q Consensus 164 kpgG~l~~~~~~~~ 177 (256)
++--.+++++....
T Consensus 481 ~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 481 NPRRLVYVSCNPHT 494 (534)
T ss_pred CccceEEEEcCHHH
Confidence 67777777655443
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.94 E-value=6.4e-09 Score=89.79 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C----CcceEEEcchhhchh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N----VHADLINTDIASGLE- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~----~~~~~~~~d~~~~~~- 109 (256)
++.+|||+|||-|.- +.+.... .. ..++|+|++...++.|+++.... . ....++.+|......
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchh---HHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 789999999998875 3444332 22 38999999999999999988321 1 122678887764321
Q ss_pred -hhcC--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 110 -KRLA--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 110 -~~~~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+.+ ..||+|-|...++..-. .......++..+.+.|+|||+++.+++ ....+...+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fe-----------------se~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~~l 196 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFE-----------------SEEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVKRL 196 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGS-----------------SHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred hhccccCCCcceeehHHHHHHhcC-----------------CHHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHHHH
Confidence 1222 48999999654433222 233467899999999999999999877 344555555
Q ss_pred HH
Q 025207 187 ME 188 (256)
Q Consensus 187 ~~ 188 (256)
.+
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 197
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.93 E-value=1.8e-09 Score=90.93 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=90.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-------HHHHHHHHcCCcc---eEEEcchhhchhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-------VTRKTLEAHNVHA---DLINTDIASGLEK 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~-------~a~~~~~~~~~~~---~~~~~d~~~~~~~ 110 (256)
++|+.|+|+..|||.+.+.++.. |+.|.|.||+-.++. ..+.|+++.|... .+..+|.......
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 68999999999999998887775 679999999999887 3356777777433 7888888776433
Q ss_pred hcCCCccEEEECCCCCCCCCcccc-cccc--------hhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVG-REGI--------ASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~-~~~~--------~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
....||.|||+|||......++. .+.. ...+. .... ...+.+++.-..+.|..||++++..+.
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~-p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHY-PSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccC-CccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 25789999999999876654322 1111 11111 1111 124566778889999999999997763
No 198
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.92 E-value=7.1e-09 Score=82.97 Aligned_cols=127 Identities=21% Similarity=0.301 Sum_probs=74.6
Q ss_pred hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcc----cCC-CceEEEEeCCHHHHHHHHHHH-------
Q 025207 24 SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ----EVP-GVQYIATDINPYAVEVTRKTL------- 90 (256)
Q Consensus 24 ~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~----~~~-~~~v~giD~~~~~i~~a~~~~------- 90 (256)
.+.+.+.+++ .+......+..+|+.+||+||.-+-.+|..+.+ ..+ ..+|+|+|+|+.+++.|++-+
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 5667777774 332222246789999999999866666665544 112 479999999999999997621
Q ss_pred -------HHc-------CC--------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 91 -------EAH-------NV--------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 91 -------~~~-------~~--------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
... +. ...|...|+.+. ....+.||+|+|-=.+. +| .
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlI--------------YF-----~ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLI--------------YF-----D 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGG--------------GS------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEE--------------Ee-----C
Confidence 110 11 116777888772 22347899999932221 11 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......+++.+++.|+|||.+++
T Consensus 151 ~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 151 PETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEE
Confidence 23468999999999999999998
No 199
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9e-09 Score=81.24 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------c-
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--------H- 96 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--------~- 96 (256)
.+...+++++... -.++.+.||+|+|+|.++.+++.+++. ++...+|||.-++.++.+++|+...-. .
T Consensus 67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 3444455555321 158999999999999999999988873 444569999999999999999976531 1
Q ss_pred --ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 97 --ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 97 --~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
..++.+|......+ ..+||.|.+..- ...+.+.+...|++||++++.
T Consensus 144 ~~l~ivvGDgr~g~~e--~a~YDaIhvGAa---------------------------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAE--QAPYDAIHVGAA---------------------------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CceEEEeCCccccCCc--cCCcceEEEccC---------------------------ccccHHHHHHhhccCCeEEEe
Confidence 16888888777554 478999988411 235567777889999999983
No 200
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.91 E-value=1.5e-08 Score=84.11 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|||+|+|.+++.+++. +|+.+++.+|. |..++.+++ .-..+++.+|+.+.. +. +|+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~----P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL----PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----cc-ccceee
Confidence 5579999999999998888877 99999999998 888888877 223489999998442 23 999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 174 (256)
.-.++..++. ....+|+++++.|+|| |+++++..
T Consensus 165 ~~vLh~~~d~-------------------~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 165 RHVLHDWSDE-------------------DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESSGGGS-HH-------------------HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ehhhhhcchH-------------------HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5554443332 3678999999999999 99999775
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.90 E-value=4.1e-08 Score=78.01 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=80.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+...|.|+|||.+.++ +.+. .+.+|+.+|+-.. +..+...|+... |..++++|++|+
T Consensus 72 ~~~viaD~GCGdA~la----~~~~---~~~~V~SfDLva~--------------n~~Vtacdia~v--PL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVP---NKHKVHSFDLVAP--------------NPRVTACDIANV--PLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH-----S---EEEEESS-S--------------STTEEES-TTS---S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHH----Hhcc---cCceEEEeeccCC--------------CCCEEEecCccC--cCCCCceeEEEE
Confidence 4579999999999964 4332 1347999998543 126888999776 445789999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..-..- ..+..++.++.++||+||.+.+.....+ ......+.+...||+.....
T Consensus 129 cLSLMG----------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-- 184 (219)
T PF05148_consen 129 CLSLMG----------------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-- 184 (219)
T ss_dssp ES---S----------------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred EhhhhC----------------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc--
Confidence 643321 1278999999999999999999776443 45677888888999875532
Q ss_pred CCCCccEEEEEEEecCc
Q 025207 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
.....+++.++.|...
T Consensus 185 -~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 185 -ESNKHFVLFEFKKIRK 200 (219)
T ss_dssp ---STTEEEEEEEE-SS
T ss_pred -cCCCeEEEEEEEEcCc
Confidence 3345778888887663
No 202
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.87 E-value=1.1e-08 Score=85.60 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA 97 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~ 97 (256)
+-+-+||...+.....+++..++|+|||-|.-++-.-+. +- ..++|+||.+..|+.|+++..... .+.
T Consensus 100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----cc-cceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 334456655554444578899999999999874332222 22 379999999999999998765321 123
Q ss_pred eEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 98 DLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.++.+|...... ++.+-+||+|-|...++..-.. ..-...++.++.+.|+|||+++-..
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet-----------------ee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET-----------------EESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeecc-----------------HHHHHHHHHHHHhhcCCCcEEEEec
Confidence 788888765432 1123449999997665433222 1235678999999999999999876
Q ss_pred eCCCCHHHHHHHHHHc
Q 025207 174 LTANDPSQICLQMMEK 189 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~ 189 (256)
| ....+...++..
T Consensus 238 P---dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 238 P---DSDVIIKRLRAG 250 (389)
T ss_pred C---cHHHHHHHHHhc
Confidence 6 345666666554
No 203
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.86 E-value=2.5e-07 Score=75.20 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=82.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++||=+|=.. ..+++++.. ++..+|+.+|+++..++..++..++.|++.+.+..|+.+.+++...++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALT----GLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 3689999888433 345555543 33459999999999999999999999999999999999999887789999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCC--H---HHHHHHHHHcCCcEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAND--P---SQICLQMMEKGYAAR 194 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~--~---~~~~~~~~~~g~~~~ 194 (256)
++|||- ..-+.-|+.+..+.||..| ..++ ..+... . .++++.+.+.|+-..
T Consensus 118 TDPPyT----------------------~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 118 TDPPYT----------------------PEGLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp E---SS----------------------HHHHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred eCCCCC----------------------HHHHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999985 2336788999999999877 4444 333332 2 267888888898776
Q ss_pred EEEecCC
Q 025207 195 IVVQRST 201 (256)
Q Consensus 195 ~~~~~~~ 201 (256)
.+.+..+
T Consensus 175 dii~~Fn 181 (243)
T PF01861_consen 175 DIIPDFN 181 (243)
T ss_dssp EEEEEEE
T ss_pred HHHhhhc
Confidence 6665543
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.85 E-value=8.1e-08 Score=79.84 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=80.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-.+++++|+++..++.|++.+..... ..+++.+|....+....+.+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~----~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH----PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS----TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhc----CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 47899999999999975544433 3345899999999999999998765321 23899999999887643338
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+.+.+- +..... .+ ....+++.+.+.|+|+|++++...+.
T Consensus 151 yDvIi~D~~d-p~~~~~--------~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAP--------NL--------FTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSS-TTSCGG--------GG--------SSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCC-CCCCcc--------cc--------cCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9999997653 111100 01 13688999999999999999865433
No 205
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=8.1e-08 Score=74.69 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---C-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 74 IATDINPYAVEVTRKTLEAHN---V-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 74 ~giD~~~~~i~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+|++|++.|+++..... . ..+++++|+.+. ++.+++||+|++..-+.+.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d------------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVD------------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCC-------------------
Confidence 489999999999987765322 1 248999999876 345678999999654433221
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 150 AVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
...++++++++|||||.+++....
T Consensus 60 --~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --HHHHHHHHHHHcCcCeEEEEEECC
Confidence 568899999999999999987643
No 206
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=82.55 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+.++|+|||+|.-++-++.. + + +|+|+|+++.|++.|++....... +..+...+..+.... ++++|+|
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~----~-k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI 104 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEH----Y-K-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLI 104 (261)
T ss_pred CcceEEEeccCCCcchHHHHHh----h-h-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--Ccceeee
Confidence 3459999999999866666665 2 3 799999999999998875432211 113444444443222 6899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCC--CHHHHHHHHHHcCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAN--DPSQICLQMMEKGY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~~~~~~~~~~~~g~ 191 (256)
++-=. .+ +-.++.+...+.++|++.| .+.+..-..+ .-.+....+.+...
T Consensus 105 ~~Aqa----------------~H------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 105 TAAQA----------------VH------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhhh----------------HH------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 98311 11 2237889999999999887 5544332211 12355555555433
No 207
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=1e-07 Score=72.65 Aligned_cols=123 Identities=19% Similarity=0.115 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+...+. ...+.-|||+|.|||.++-++.... .+...++++|+|++.+....+... ..+++++|
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~g---v~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gd 102 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRG---VRPESLTAIEYSPDFVCHLNQLYP----GVNIINGD 102 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcC---CCccceEEEEeCHHHHHHHHHhCC----Cccccccc
Confidence 5777888877764 2567899999999999987766653 345689999999999887766542 23688888
Q ss_pred hhhch---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 104 IASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.+.- .++....||.|+|..|+-..+-. ....+++.+...|..||-++..+-+
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~-------------------~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-------------------RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcHH-------------------HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 87764 23334569999999888655532 2568899999999999999986654
No 208
>PRK04148 hypothetical protein; Provisional
Probab=98.80 E-value=5.4e-08 Score=72.53 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~-~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
.+++++.+.+. ..++.+|+|+|||+|. ++..+++. +..|+|+|+++.+++.++++. .+++..|+
T Consensus 3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC------CeEEECcC
Confidence 35566665543 3466899999999996 66655543 569999999999998887652 27999999
Q ss_pred hhchhhhcCCCccEEEE-CCC
Q 025207 105 ASGLEKRLAGLVDVMVV-NPP 124 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~-npP 124 (256)
++..... -+.+|+|.+ .||
T Consensus 68 f~p~~~~-y~~a~liysirpp 87 (134)
T PRK04148 68 FNPNLEI-YKNAKLIYSIRPP 87 (134)
T ss_pred CCCCHHH-HhcCCEEEEeCCC
Confidence 8875442 367999997 444
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.80 E-value=3.9e-07 Score=73.49 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=97.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
|.|+||--|.+++++.+. +.--.++++|+++.-++.|++++...++.. ++..+|..+.+.+. +..|.|+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIA- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIA- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEE-
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEe-
Confidence 689999999999988886 333479999999999999999999998765 88899988776542 236887661
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 203 (256)
|+. -.....+++.....++....+++ .| ......+++++.+.||............
T Consensus 74 ---------------------GMG-G~lI~~ILe~~~~~~~~~~~lIL-qP-~~~~~~LR~~L~~~gf~I~~E~lv~e~~ 129 (205)
T PF04816_consen 74 ---------------------GMG-GELIIEILEAGPEKLSSAKRLIL-QP-NTHAYELRRWLYENGFEIIDEDLVEENG 129 (205)
T ss_dssp ---------------------EE--HHHHHHHHHHTGGGGTT--EEEE-EE-SS-HHHHHHHHHHTTEEEEEEEEEEETT
T ss_pred ---------------------cCC-HHHHHHHHHhhHHHhccCCeEEE-eC-CCChHHHHHHHHHCCCEEEEeEEEeECC
Confidence 222 24567888888777776667776 44 4568899999999999876655555555
Q ss_pred ccEEEEEEEecCccc
Q 025207 204 ENLHIIKFWRDFDIQ 218 (256)
Q Consensus 204 ~~~~l~~~~~~~~~~ 218 (256)
-.+.++.+.+.....
T Consensus 130 ~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 130 RFYEIIVAERGEEKP 144 (205)
T ss_dssp EEEEEEEEEESSS--
T ss_pred EEEEEEEEEeCCCCC
Confidence 455566666655444
No 210
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.80 E-value=2.8e-07 Score=73.15 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------------------------
Q 025207 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------------------------ 93 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------------------------ 93 (256)
+....+.+++|+|||+|.++.-+..+ +... =..|+|.|+++++++.|++|+...
T Consensus 47 l~~~~p~tLyDPCCG~gyLLTVlGLL-h~~~-l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~ 124 (246)
T PF11599_consen 47 LEGKGPYTLYDPCCGSGYLLTVLGLL-HRRR-LRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSH 124 (246)
T ss_dssp SSS-S-EEEEETT-TTSHHHHHHHHH-TGGG-EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHH
T ss_pred hcCCCCeeeeccCCCccHHHHHHHHh-hhHH-HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchH
Confidence 34567899999999999987666654 2211 137999999999999998876211
Q ss_pred -----------------C--CcceEEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHH
Q 025207 94 -----------------N--VHADLINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAV 151 (256)
Q Consensus 94 -----------------~--~~~~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
| .+..+.+.|+++.... . .....|+|+.+.||....+ +.++.+.+.
T Consensus 125 ~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~------------W~g~~~~~p 192 (246)
T PF11599_consen 125 AEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS------------WQGEGSGGP 192 (246)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS------------TTS---HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc------------ccCCCCCCc
Confidence 1 0114777777775431 1 1244799999999986543 333344556
Q ss_pred HHHHHHHHhhccccCeEEEE
Q 025207 152 IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~ 171 (256)
...++..++.+|-+++++.+
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHHHhhCCCCcEEEE
Confidence 88999999999955555555
No 211
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.80 E-value=1.9e-07 Score=80.16 Aligned_cols=146 Identities=16% Similarity=0.072 Sum_probs=97.3
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+..++-.|+.|.-|.+...+-+...+-...+ .++..++|+|||+|.-+..+...+.+.....+++++|+|.++++.+
T Consensus 43 LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a 120 (319)
T TIGR03439 43 LFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRT 120 (319)
T ss_pred HHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 34556678999977777666655544333333 3567899999999998777777765444457899999999999999
Q ss_pred HHHHHHcC---CcceEEEcchhhchhhh----cCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 87 RKTLEAHN---VHADLINTDIASGLEKR----LAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 87 ~~~~~~~~---~~~~~~~~d~~~~~~~~----~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
..++.... +...-+++|+.+.+... ......+++.- --+.+ +.+ .....+++.
T Consensus 121 ~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGN--------f~~-----------~ea~~fL~~ 181 (319)
T TIGR03439 121 LAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGN--------FSR-----------PEAAAFLAG 181 (319)
T ss_pred HHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccC--------CCH-----------HHHHHHHHH
Confidence 99887322 33366888887764321 12234555441 11111 111 225688999
Q ss_pred Hhh-ccccCeEEEEEE
Q 025207 159 ADK-LLSKRGWLYLVT 173 (256)
Q Consensus 159 ~~~-~LkpgG~l~~~~ 173 (256)
+++ .|+|||.+++-.
T Consensus 182 ~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 182 FLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhCCCCCEEEEec
Confidence 999 999999988844
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4e-08 Score=81.26 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=69.0
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+.+... ..++..|||||+|.|.+|..+++. ...|+++|+++.+++..++... ..-+.+++++|+...
T Consensus 19 ~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcC
Confidence 445555432 245899999999999999998887 3489999999999999988765 222338999999887
Q ss_pred hhhhcCCCccEEEECCCCCCCC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
..+.. ..++.|++|.||+.++
T Consensus 89 d~~~l-~~~~~vVaNlPY~Iss 109 (259)
T COG0030 89 DFPSL-AQPYKVVANLPYNISS 109 (259)
T ss_pred cchhh-cCCCEEEEcCCCcccH
Confidence 43211 1689999999998654
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.79 E-value=3.8e-08 Score=80.68 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=67.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++..|||+|.|||.++..+.+. +.+|+|+|+++.|+....++++...... +++.+|+..... -.||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cccc
Confidence 378999999999999999877776 5699999999999999999876444333 899999987633 3799
Q ss_pred EEEECCCCCCCCC
Q 025207 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
.+|+|.||..++.
T Consensus 126 ~cVsNlPyqISSp 138 (315)
T KOG0820|consen 126 GCVSNLPYQISSP 138 (315)
T ss_pred eeeccCCccccCH
Confidence 9999999987765
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=3.1e-07 Score=77.44 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=82.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCCcc
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~fD 117 (256)
+++||-+|-|.|..+.++.+. .+-.+++.+||++..++.+++.+.... . ..+++..|..+.+.... .+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh----~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKH----LPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhc----CCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCC
Confidence 379999999999988777776 334589999999999999999887543 1 12899999999887653 4899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++-.-..-+ .. .-+...+.+.|.+.|+++|+++.-+
T Consensus 152 vIi~D~tdp~gp---------~~--------~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDPVGP---------AE--------ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCCCCc---------cc--------ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999963211000 00 1124688999999999999999853
No 215
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.72 E-value=7.9e-08 Score=80.29 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH-----c
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA-----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~-----~ 93 (256)
...+.+.+++.+..-......+|+-+||+||.-+-.+|..|.+..+ ..+|+|+|||..+++.|+.-+.. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 5666677777653211124789999999999755555555444342 58999999999999999652211 1
Q ss_pred CCc-------------------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 94 NVH-------------------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 ~~~-------------------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
+++ ..|...|+.+..+ ..+.||+|+|-= ...+| .
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRN--------------VLIYF-----d 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRN--------------VLIYF-----D 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcc--------------eEEee-----C
Confidence 110 0344555544432 457899999921 11111 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......++...+..|+|||.+++
T Consensus 217 ~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Confidence 23478899999999999999998
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.71 E-value=7.7e-08 Score=81.34 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~----~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
...+|+..||+||.-+-.+|..+.+.. .+.+|+|+|+|+.+++.|++-+.. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999976666666554321 147899999999999999874210 00
Q ss_pred ---C----c--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 95 ---V----H--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ---~----~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+ . ..|...|+.+...+ ..+.||+|+|.-.+.+.. ......++..+++.|+|
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~-------------------~~~~~~vl~~l~~~L~p 254 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFD-------------------KTTQERILRRFVPLLKP 254 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCC-------------------HHHHHHHHHHHHHHhCC
Confidence 0 0 16777777663211 247899999932222211 12367899999999999
Q ss_pred CeEEEE
Q 025207 166 RGWLYL 171 (256)
Q Consensus 166 gG~l~~ 171 (256)
||++++
T Consensus 255 gG~L~l 260 (287)
T PRK10611 255 DGLLFA 260 (287)
T ss_pred CcEEEE
Confidence 998877
No 217
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.69 E-value=4.1e-07 Score=78.91 Aligned_cols=143 Identities=16% Similarity=0.089 Sum_probs=101.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++.||||.|+..|.-+..+|.+++. ...|+|-|.+...++....|+.+.|+.+ .+.+.|..++......++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 579999999999999999999988863 3489999999999999999999999887 777888876543334458999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCC----CcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHH
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGE----NGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~ 188 (256)
|+.+-|..-..- ..+.....+.... .-.....+++.....++++||+++.++++-.. .+.+.+++..
T Consensus 316 VLLDAPCSGtgv---i~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 316 VLLDAPCSGTGV---ISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred eeecCCCCCCcc---cccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 999988754111 1111111111000 00114567788899999999999999986542 2344444443
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.67 E-value=4e-06 Score=67.42 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=110.2
Q ss_pred ccceeeeccCC----ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025207 6 AQIRLVSSHPE----VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 6 ~~~~~~~~~~~----~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
|+=+.+.+... .|+-+.. ...|+..++.-+..++-+++.+||-+|.++|+-.-.++..++ ++..|+|+|.++
T Consensus 32 YGEk~i~~~~~~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg---~~G~VYaVEfs~ 108 (229)
T PF01269_consen 32 YGEKRISVEGEGKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVG---PDGVVYAVEFSP 108 (229)
T ss_dssp SSSEEEEETTE---EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHT---TTSEEEEEESSH
T ss_pred cCceeEeecCCCCccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccC---CCCcEEEEEecc
Confidence 33344444444 5665555 788888888877767778999999999999998777777764 567999999999
Q ss_pred HHHHHHHHHHHHcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025207 81 YAVEVTRKTLEAHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
...+..-.-.+ ...+.-.+..|+..+..- ..-+.+|+|+++-..- +-..-++.++
T Consensus 109 r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp-----------------------~Qa~I~~~Na 164 (229)
T PF01269_consen 109 RSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQP-----------------------DQARIAALNA 164 (229)
T ss_dssp HHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SST-----------------------THHHHHHHHH
T ss_pred hhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEecCCCh-----------------------HHHHHHHHHH
Confidence 87765543332 222335677888765321 1235899999974321 0134567788
Q ss_pred hhccccCeEEEEEEeCC-----CCH----HHHHHHHHHcCCcEEE-EEecCCCCccEEEEEEE
Q 025207 160 DKLLSKRGWLYLVTLTA-----NDP----SQICLQMMEKGYAARI-VVQRSTEEENLHIIKFW 212 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~-----~~~----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~ 212 (256)
...||+||.++++.... ... ....+.+++.+|+... +.......++..++...
T Consensus 165 ~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 165 RHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 88999999999876421 112 2345566667888744 55555666666665443
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.65 E-value=2e-06 Score=71.67 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=93.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-hcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK-RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~-~~~~~fD 117 (256)
+.+.+||||.||.|...+.+....... ...|...|.++..++..++.++..|+.. +|.++|+++...- ..+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 578999999999999887777663321 2589999999999999999999999976 8999999886321 1234578
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCHHHHHHHHHH
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDPSQICLQMME 188 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~ 188 (256)
++|..--|-..++ .+.....+..+.+.+.|||.+++...++ .+.+.+...+..
T Consensus 212 l~iVsGL~ElF~D------------------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 212 LAIVSGLYELFPD------------------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEEEecchhhCCc------------------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 8887544432222 2345667888999999999999855333 334445555544
No 220
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.64 E-value=6.1e-07 Score=73.17 Aligned_cols=125 Identities=15% Similarity=0.292 Sum_probs=88.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
....|-|+|||-+.++ .. .+ ..|+.+|+-+. +.+++..|+.+. +..+++.|++|+
T Consensus 180 ~~~vIaD~GCGEakiA----~~----~~-~kV~SfDL~a~--------------~~~V~~cDm~~v--Pl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIA----SS----ER-HKVHSFDLVAV--------------NERVIACDMRNV--PLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhhh----hc----cc-cceeeeeeecC--------------CCceeeccccCC--cCccCcccEEEe
Confidence 5689999999999963 31 12 37999997432 237888999886 555899999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.. | ..+..++.++.++|++||.+++.....+ ....+.+.+...||.....
T Consensus 235 CLSLM------------------g----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~--- 289 (325)
T KOG3045|consen 235 CLSLM------------------G----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK--- 289 (325)
T ss_pred eHhhh------------------c----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh---
Confidence 64321 1 1268999999999999999999765443 4456888888999985433
Q ss_pred CCCCccEEEEEEEecCc
Q 025207 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
......+++.++.+-+.
T Consensus 290 d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 290 DVSNKYFTLFEFKKTPK 306 (325)
T ss_pred hhhcceEEEEEEecCCc
Confidence 23344556777766443
No 221
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.61 E-value=1.4e-07 Score=77.29 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=33.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
.++++|||+|||+|.++..+++. + ..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHHH
Confidence 46789999999999999888875 2 2489999999988765
No 222
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.60 E-value=3e-07 Score=78.01 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=67.2
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+.+.+++.+. ..++..++|.+||.|..+..+++.+. +++.|+|+|.++.+++.|++++.. .-...++++|+.+
T Consensus 7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~---~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLG---PKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCC---CCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHH
Confidence 3444555543 25778999999999999998888732 357999999999999999988765 2234899999887
Q ss_pred chhhhcC--CCccEEEECC
Q 025207 107 GLEKRLA--GLVDVMVVNP 123 (256)
Q Consensus 107 ~~~~~~~--~~fD~Ii~np 123 (256)
......+ .++|.|++|.
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 6433222 2799999965
No 223
>PRK10742 putative methyltransferase; Provisional
Probab=98.58 E-value=1e-06 Score=72.40 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------CC----cceEEEcchhhchh
Q 025207 42 HPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------NV----HADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~--~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------~~----~~~~~~~d~~~~~~ 109 (256)
++. +|||+-+|+|..++.++.. ++.|+++|-++.+....++++... +. ..+++++|..+.+.
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 444 8999999999999988876 678999999999999999999874 21 23788999998876
Q ss_pred hhcCCCccEEEECCCCCCCCC
Q 025207 110 KRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~ 130 (256)
.. ..+||+|+++|||-+...
T Consensus 160 ~~-~~~fDVVYlDPMfp~~~k 179 (250)
T PRK10742 160 DI-TPRPQVVYLDPMFPHKQK 179 (250)
T ss_pred hC-CCCCcEEEECCCCCCCcc
Confidence 53 347999999999976443
No 224
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=3.8e-07 Score=74.95 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...++||||+|.|.++..++.. +. +|+++|.|+.|....++ .|.. ++ +..+... .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~----f~--~v~aTE~S~~Mr~rL~~----kg~~--vl--~~~~w~~--~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL----FK--EVYATEASPPMRWRLSK----KGFT--VL--DIDDWQQ--TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh----cc--eEEeecCCHHHHHHHHh----CCCe--EE--ehhhhhc--cCCceEEEee
Confidence 5689999999999999888887 33 69999999999765544 3332 22 2223211 2468999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-=. + +..+....+++.+++.|+|+|++++..
T Consensus 158 LNv-----------------L----DRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNV-----------------L----DRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhh-----------------h----hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 210 0 011125688999999999999988743
No 225
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.57 E-value=1e-07 Score=75.79 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=79.6
Q ss_pred ccCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 13 ~~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
-...++..+++ .+.++......+ ....|+|..||.|..++..+.. ++.|+++|++|..+..|+.|+
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~------~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNa 136 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACM------NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNA 136 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhc------CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccc
Confidence 34445544443 455555444443 4578999999999999988887 458999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCC
Q 025207 91 EAHNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~ 129 (256)
+-.|++. .|+++|+.+..... ....+|+++..|||.-..
T Consensus 137 eiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 137 EVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred eeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 9999876 89999999886543 234578999999986543
No 226
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.57 E-value=3.5e-07 Score=77.18 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
-.++.|||+|||+|.++..+++. + ..+|+++|- .+|.+.|++.++.|.+.. .++.+.+.+... +++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh----C-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC---chhccE
Confidence 36799999999999999888876 2 248999996 578899999999887655 788888877643 378999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+.|-=+..- ....++.++. ..+.|||+|..+-
T Consensus 247 iISEPMG~mL~------------------NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLV------------------NERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhh------------------hHHHHHHHHH-HHhhcCCCCcccC
Confidence 99965211000 0112333333 3489999999874
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=2.4e-07 Score=72.53 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|||+|+|+|..++..++.. ...|++.|+.|..+...+-|++.|+....+...|... . +..||+++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----PPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----CcceeEEE
Confidence 368999999999999999988873 2379999999999999999999999888888888765 2 35799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..-.|+..+ ...+++. +...|+..|..+++....+
T Consensus 148 agDlfy~~~---------------------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNHT---------------------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eeceecCch---------------------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 866655332 2345555 7777888888777654443
No 228
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=98.54 E-value=3.1e-06 Score=71.00 Aligned_cols=187 Identities=16% Similarity=0.265 Sum_probs=109.5
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~--~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++. +++.++.+.|+.. ..-++-|+-+.+..-...++. +=+|||+|..++ .-+++.+..++...++|+++.
T Consensus 63 Dfgl~-veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci----~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 63 DFGLS-VEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCI----YPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred ccCce-EecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhh----HHhhhchhccceeeeeecccc
Confidence 34444 8899999999988 555666666666443222222 258999999885 333444445789999999999
Q ss_pred HHHHHHHHHHHcCCcc--eEEEcchhhc-----hhhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCC
Q 025207 82 AVEVTRKTLEAHNVHA--DLINTDIASG-----LEKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGEN 147 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~~--~~~~~d~~~~-----~~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~ 147 (256)
.+..|+.|+.+|++.. .+++....+. .....+..||+++|||||+....+.. ....+.....|+..
T Consensus 138 s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~ 217 (419)
T KOG2912|consen 138 SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQ 217 (419)
T ss_pred ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchh
Confidence 9999999999998765 3333322221 11112356999999999998633211 11222222233211
Q ss_pred ------cH-HHHHHHHHHHhhccccCeEEEEEEeC-CCCHHHHHHHHHHcCCcEEEEE
Q 025207 148 ------GR-AVIDKILPSADKLLSKRGWLYLVTLT-ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 148 ------~~-~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|. .+..+++.... .|+.+=+.+-+..+ ......+...+.+.|.....+.
T Consensus 218 e~v~eggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~it 274 (419)
T KOG2912|consen 218 EFVSEGGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKIT 274 (419)
T ss_pred HHHhhccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHHcCCceEEEE
Confidence 11 12233333322 24555455543332 2345677888888886544433
No 229
>PRK00536 speE spermidine synthase; Provisional
Probab=98.51 E-value=3e-06 Score=70.68 Aligned_cols=95 Identities=7% Similarity=-0.097 Sum_probs=69.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc---eEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA---DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~---~~~~~d~~~~~~~~~~~~ 115 (256)
+.+++||=+|-|.|..+.++.+. +. +|+.+||++++++.+++.+... ++++ +++. . ..+...++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~---~~~~~~~~ 139 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--Q---LLDLDIKK 139 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--h---hhhccCCc
Confidence 57899999999999987666654 44 9999999999999999965543 2222 3433 1 11212368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+||++..| -..+.+.+.+.|+|||+++.-
T Consensus 140 fDVIIvDs~~--------------------------~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQEP--------------------------DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCCC--------------------------ChHHHHHHHHhcCCCcEEEEC
Confidence 9999998432 246678899999999999983
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.50 E-value=1.4e-06 Score=69.09 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=76.2
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~ 107 (256)
..+.+.+..+...++.+|||+||++|.++..+.+.. .+.+.|+|+|+.+.. ..+. ..+++|+.+.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~ 75 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNP 75 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEE
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc-----------cccceeeeecccchh
Confidence 344555443333367999999999999987777653 245799999998871 1111 3333333221
Q ss_pred -----hhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 108 -----LEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 108 -----~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
..... .+.+|+|+++.-........ .... .........+..+...|++||.+++-.......
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~d~~---------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRN-IDEF---------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE-------SSHH-SSHH---------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred hHHHhhhhhccccccCcceeccccccCCCCchh-hHHH---------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 12211 26899999976221111100 0000 011223344556678899999888755443333
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 025207 180 SQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~ 199 (256)
.++...+....-.+..+.+.
T Consensus 146 ~~~~~~l~~~F~~v~~~Kp~ 165 (181)
T PF01728_consen 146 EELIYLLKRCFSKVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHHHEEEEE-T
T ss_pred HHHHHHHHhCCeEEEEEECc
Confidence 46666666532233334433
No 231
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.49 E-value=5.8e-06 Score=62.06 Aligned_cols=94 Identities=27% Similarity=0.277 Sum_probs=62.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 72 QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 72 ~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+||.+++++.+++++...++.. ++++.+-.....-..++++|+++.|.-|.+-.+.+... ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T------------~~ 68 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT------------KP 68 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--------------H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc------------Cc
Confidence 58999999999999999999988754 67776655543222224899999999888766544221 12
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 150 AVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.....++.+.++|+|||++.++.-...
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence 2356778999999999999998775433
No 232
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.1e-06 Score=66.80 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=96.7
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
...|..+.++-.++..... -.+.+|||+|.|--++ ...++...-|...|..+|-++++++..++....|-...
T Consensus 9 ciwpseeala~~~l~~~n~---~rg~~ilelgggft~l---aglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNK---IRGRRILELGGGFTGL---AGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL 82 (201)
T ss_pred EecccHHHHHHHHHhchhH---HhHHHHHHhcCchhhh---hhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc
Confidence 3455567777777766543 2578999999885443 22334444567789999999999999998887773321
Q ss_pred ---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 98 ---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+...+...........+||+|+|-- +.|+ -+...++++.+..+|+|.|..++..|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaAD----------------ClFf-----dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAAD----------------CLFF-----DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEecc----------------chhH-----HHHHHHHHHHHHHHhCcccceeEecC
Confidence 33344443333333346899999832 2221 12367889999999999999888776
Q ss_pred CCC-CHHHHHHHHHHcCCcEE
Q 025207 175 TAN-DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 175 ~~~-~~~~~~~~~~~~g~~~~ 194 (256)
... ......+.....||...
T Consensus 142 RRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred cccchHHHHHHHHHhceeEEE
Confidence 332 34455666666676543
No 233
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.42 E-value=2.7e-06 Score=68.14 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhccccc-CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc
Q 025207 24 SFALVDALLADRINLVE-HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~-~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~ 102 (256)
+..+++|+.+....... ....++|||||-+....+.. .+-..|+.||+++.. ..+.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-------~~~fdvt~IDLns~~--------------~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-------SGWFDVTRIDLNSQH--------------PGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc-------cCceeeEEeecCCCC--------------CCceee
Confidence 78889998887643221 13479999999977643221 223469999998721 157777
Q ss_pred chhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE-----EEEEEeCC
Q 025207 103 DIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW-----LYLVTLTA 176 (256)
Q Consensus 103 d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 176 (256)
|+.+...+ ...++||+|.+.......|++. -...++..+++.|+|+|. ++++.|..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~------------------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPK------------------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHH------------------HHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 87776332 3467899999866555544432 256889999999999999 99988643
Q ss_pred C-------CHHHHHHHHHHcCCcEEEE
Q 025207 177 N-------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 ~-------~~~~~~~~~~~~g~~~~~~ 196 (256)
. ..+.+..+|...||.....
T Consensus 153 Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 153 CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 2 3457788999999986544
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.39 E-value=5e-07 Score=65.12 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
||+|+..|..+..+++.+.... ..+++++|..+. .+.+++.++..+.. .+++.++..+.+..+..+++|+|+.+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999999888887765321 147999999995 33344444434433 3899999988776654579999999643
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ........++.+.+.|+|||++++
T Consensus 79 H----------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 H----------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C----------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 123356678889999999999887
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=5.5e-05 Score=60.69 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=95.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+.++.|+||--+.++.++.+. .+-..+++.|+++..++.|.+++..+++.. ++..+|....+.. +..+|.|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~----~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN----NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc----CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc--cCCcCEE
Confidence 4556999999999998888776 666789999999999999999999988764 6666776554432 3479998
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.- |+.| .....++++..+.|+.--++++ .+.....+++.++...+|..+.....
T Consensus 90 vIA----------------------GMGG-~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 90 VIA----------------------GMGG-TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred EEe----------------------CCcH-HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhCCceeeeeeee
Confidence 762 2322 3466888888887776656666 44556889999999999987554433
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.33 E-value=1e-06 Score=69.36 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc-eEEEcchhhchhhhc-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA-DLINTDIASGLEKRL- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~-~~~~~d~~~~~~~~~- 112 (256)
....+.|||||-|.+++.++.. +|+..+.|.||-...-+..+++|.... ..+ .+...+....++.++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~----fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPK----FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhcccc----CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 4578999999999988777766 999999999999999999999888764 232 677777777766543
Q ss_pred CCCc--cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 113 AGLV--DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 113 ~~~f--D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+.. +..+..-|.+..... . .......++.+..-+|++||.++.++............+++..
T Consensus 136 kgqLskmff~fpdpHfk~~kh-------k--------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKH-------K--------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred hcccccceeecCChhHhhhhc-------c--------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 2332 222222233211110 1 1112356688888899999999998765555555566666655
Q ss_pred C
Q 025207 191 Y 191 (256)
Q Consensus 191 ~ 191 (256)
+
T Consensus 201 l 201 (249)
T KOG3115|consen 201 L 201 (249)
T ss_pred H
Confidence 4
No 237
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.31 E-value=2.2e-05 Score=72.02 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=88.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++..|.|+.||+|.+.+...+.+........++|.+..+.++..+..|+..++... ....+|-...........||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 56799999999999987655543210112579999999999999999988776532 333344332111112356999
Q ss_pred EEECCCCCCCCCcc-cc-cccchhhhcCCC---CcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHH
Q 025207 119 MVVNPPYVPTPEDE-VG-REGIASAWAGGE---NGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~-~~-~~~~~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~ 188 (256)
|++||||...-... .. ......+|..+. ... .=..++..++..|++||+..++.+..- ....++..+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~lL~ 375 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSK-ADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYLVD 375 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCch-hhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHHHHHHHH
Confidence 99999996532111 00 111122222110 111 123556667778999999887765331 23356666666
Q ss_pred cCCc
Q 025207 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
++..
T Consensus 376 ~~~~ 379 (501)
T TIGR00497 376 QNFV 379 (501)
T ss_pred cCcE
Confidence 6654
No 238
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.9e-05 Score=67.92 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh-------hhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE-------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~-------~~~ 112 (256)
+++.+|||+|+..|.-++.+.+.+........|++=|.++..+......+......+ .+...|+..... +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 699999999999999998888877543223489999999999998888775544332 333333332211 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCC-Cc-HHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE-NG-RAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMM 187 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~ 187 (256)
...||-|+|+-|-............-...|.... .+ ......++.+..++||+||+++.++++.+. ...+.++++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~ 313 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQ 313 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHH
Confidence 2569999999998765332211111111132221 11 224568899999999999999999987653 335566666
Q ss_pred HcC
Q 025207 188 EKG 190 (256)
Q Consensus 188 ~~g 190 (256)
..+
T Consensus 314 ~~~ 316 (375)
T KOG2198|consen 314 KVG 316 (375)
T ss_pred Hhc
Confidence 655
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.30 E-value=3.3e-06 Score=71.02 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+.. .++..|||+|+|.|.++..+++.+ .+++++|+++..++..++.+. ..-..+++.+|+
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh-hcccceeeecch
Confidence 5566777776642 478999999999999999998872 489999999999999888664 222348999999
Q ss_pred hhchhhh-cCCCccEEEECCCCC
Q 025207 105 ASGLEKR-LAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~-~~~~fD~Ii~npP~~ 126 (256)
.+..... .......|++|.||.
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 8874431 234667999999984
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.28 E-value=1.5e-06 Score=67.72 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.+.|+|+|+|.++.-++... -+|+++|.+|...+.|.+|+..+|..+ +++.+|+.+. .+ +..|+|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y--~f--e~ADvvi 101 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY--DF--ENADVVI 101 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--cc--cccceeH
Confidence 34889999999999988777762 289999999999999999998888777 9999999887 33 5789999
Q ss_pred E
Q 025207 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
|
T Consensus 102 c 102 (252)
T COG4076 102 C 102 (252)
T ss_pred H
Confidence 9
No 241
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.26 E-value=2.3e-05 Score=66.25 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred HHHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 27 LVDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 27 l~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+..++.++. .++...+.+|||+|||.|..+.++...... -.+++++|.|+.|++.++..+....... .....+.
T Consensus 17 ~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 17 AVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh
Confidence 3344455553 233457789999999999987777666431 2379999999999999888665332111 1111111
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----H
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----S 180 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~ 180 (256)
.....+. ...|+|++.......++ .....+++.+.+.+++ .+++++++.... .
T Consensus 94 ~~~~~~~--~~~DLvi~s~~L~EL~~-------------------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~ 150 (274)
T PF09243_consen 94 YRDFLPF--PPDDLVIASYVLNELPS-------------------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIA 150 (274)
T ss_pred hcccccC--CCCcEEEEehhhhcCCc-------------------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHH
Confidence 1111111 23499999655443332 1256778888777766 888888765432 3
Q ss_pred HHHHHHHHcCCcE
Q 025207 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++++.+.+.|+.+
T Consensus 151 ~aR~~l~~~~~~v 163 (274)
T PF09243_consen 151 EARDQLLEKGAHV 163 (274)
T ss_pred HHHHHHhhCCCce
Confidence 5666666666554
No 242
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.4e-05 Score=60.52 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hhh-cCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~-~~~ 114 (256)
.++..|+|+|+..|.++..+++.++ ++..|+|+|+.|-..-. ...++++|+.... ... ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~---~~~~ivavDi~p~~~~~----------~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG---AGGKIVAVDILPMKPIP----------GVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC---CCCcEEEEECcccccCC----------CceEEeeeccCccHHHHHHHHcCCC
Confidence 5789999999999999998888865 34469999998743211 1256666665442 222 234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+|+|++++.= +..... . .+...........++.+..+|++||.+++-.......+++...++++.
T Consensus 111 ~~DvV~sD~ap-~~~g~~----~-----~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAP-NTSGNR----S-----VDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCC-CcCCCc----c-----ccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 47999997521 111100 0 011112223455677788899999999997777777788888887653
No 243
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=69.85 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=75.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+....++|||||-|.+.. .+..++-+ +++-+|.|..|++.++..- .+++......+|=... ++.+.++|+|+
T Consensus 71 k~fp~a~diGcs~G~v~r----hl~~e~ve-kli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~L--df~ens~DLii 142 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKR----HLRGEGVE-KLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFL--DFKENSVDLII 142 (325)
T ss_pred hhCcceeecccchhhhhH----HHHhcchh-heeeeecchHHHHHhhccC-CCceEEEEEecchhcc--cccccchhhhh
Confidence 567899999999999643 33322333 7999999999999987642 1333335555553332 45678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+..-.+..++ +...+.+|+..|||.|.++-+..+.+...+
T Consensus 143 sSlslHW~Nd---------------------LPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 143 SSLSLHWTND---------------------LPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hhhhhhhhcc---------------------CchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 8543322221 456677899999999998876655554433
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.21 E-value=5.4e-06 Score=62.89 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhh
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIAS 106 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~ 106 (256)
.|+|+|||.|.+++.++.. +++++++++|.++.+++.+++++..++... .+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999998888776 677799999999999999999999888654 666655544
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.21 E-value=1.5e-05 Score=60.60 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=58.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Ccc--eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.+..+|+|+|||-|.++..++..+....++.+|+|+|.++..++.+.+..+..+ +.. .+..++..+... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS---SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc---cCCC
Confidence 578999999999999999999866554578899999999999999999888766 322 444444433211 3456
Q ss_pred cEEEE
Q 025207 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 77766
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.20 E-value=3.1e-06 Score=75.44 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=75.0
Q ss_pred ccCCccccCCchHHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-----HHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-----YAVEVT 86 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-----~~i~~a 86 (256)
+..+--..-......++.|.+.+..+ ..+.-..+||+|||+|.++..+... + |+.+-+.+ ..++.|
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r------~--V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER------N--VTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC------C--ceEEEcccccCCchhhhhh
Confidence 44444343444666777776666432 1234478999999999997555443 3 44433333 334443
Q ss_pred HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
.+ .|+.. +.+-+.....+++...||+|-|.-.... |... . ..++-++.++|+||
T Consensus 159 le----RGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~i~--------------W~~~-~-----g~~l~evdRvLRpG 212 (506)
T PF03141_consen 159 LE----RGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCLIP--------------WHPN-D-----GFLLFEVDRVLRPG 212 (506)
T ss_pred hh----cCcch--hhhhhccccccCCccchhhhhccccccc--------------chhc-c-----cceeehhhhhhccC
Confidence 32 35432 2222222334667789999987322111 1110 0 23577889999999
Q ss_pred eEEEEEEeCCC
Q 025207 167 GWLYLVTLTAN 177 (256)
Q Consensus 167 G~l~~~~~~~~ 177 (256)
|.++++.+...
T Consensus 213 Gyfv~S~ppv~ 223 (506)
T PF03141_consen 213 GYFVLSGPPVY 223 (506)
T ss_pred ceEEecCCccc
Confidence 99999876543
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=0.00037 Score=55.21 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred ccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025207 6 AQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
|+=+.+.+....|+-+.. ...|+..++.=+..++-+++.+||=+|..+|.-.-.++..+ +...++|+|.++....
T Consensus 39 YGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv----~~G~iYaVEfs~R~~r 114 (231)
T COG1889 39 YGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIV----GEGRIYAVEFSPRPMR 114 (231)
T ss_pred cCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhcc----CCCcEEEEEecchhHH
Confidence 333445555555666655 78888888888887777899999999999999766666653 3568999999999887
Q ss_pred HHHHHHHHcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 85 VTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
..-...... -+.-.+.+|+..+.. ...=+..|+|+.+-..- +-.+-+..++...|
T Consensus 115 eLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp-----------------------~Qa~I~~~Na~~FL 170 (231)
T COG1889 115 ELLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP-----------------------NQAEILADNAEFFL 170 (231)
T ss_pred HHHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEEecCCc-----------------------hHHHHHHHHHHHhc
Confidence 665544321 122567778766532 12235699999863210 01345567888999
Q ss_pred ccCeEEEEEEeCCC-----CHH----HHHHHHHHcCCcEEEEE-ecCCCCccEEEE
Q 025207 164 SKRGWLYLVTLTAN-----DPS----QICLQMMEKGYAARIVV-QRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~-----~~~----~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~ 209 (256)
|+||.++++....+ .++ +....+++.+|+...+. ......++..++
T Consensus 171 k~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~ 226 (231)
T COG1889 171 KKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIV 226 (231)
T ss_pred ccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEE
Confidence 99998777553221 222 33456667788765433 334444555444
No 248
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.18 E-value=5.9e-05 Score=63.12 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH----cC
Q 025207 24 SFALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----HN 94 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----~~ 94 (256)
.....+.|++.+..+. .....+||-+|||.|.++.+++.. +..+.|.|.|--|+=...-.+.. +.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~ 106 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQ 106 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCc
Confidence 4555666666665432 245689999999999998888876 56899999999985432221110 00
Q ss_pred C------------------------c-------------ceEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccc
Q 025207 95 V------------------------H-------------ADLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGRE 136 (256)
Q Consensus 95 ~------------------------~-------------~~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~ 136 (256)
. + ..+..||+.+.-.+. ..++||+|++. |+...
T Consensus 107 ~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDT------- 177 (270)
T PF07942_consen 107 FTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDT------- 177 (270)
T ss_pred EEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeec-------
Confidence 0 0 033444444432221 12567777764 33211
Q ss_pred cchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC-----------CHHHHHHHHHHcCCcEEEE
Q 025207 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN-----------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~-----------~~~~~~~~~~~~g~~~~~~ 196 (256)
...+..+++.+.++|||||.-+=+.| ... ..+++...+...||+....
T Consensus 178 ------------A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 178 ------------AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred ------------hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 22367889999999999996553221 111 2468999999999987543
No 249
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.16 E-value=2.3e-05 Score=65.09 Aligned_cols=165 Identities=12% Similarity=0.111 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---------
Q 025207 26 ALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------- 93 (256)
Q Consensus 26 ~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------- 93 (256)
.++.+.+..+-... ..++.++||+|||.-...+ ..++ ++. -.|+..|..+...+..++-++..
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~--lsa~--~~f-~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~ 111 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQL--LSAC--EWF-EEIVLSDYSEQNREELEKWLRKEGAFDWSPFW 111 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGG--TTGG--GTE-EEEEEEESSHHHHHHHHHHHTT-TS--THHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhh--hhHH--Hhh-cceEEeeccHhhHHHHHHHHCCCCCCCccHHH
Confidence 35555554443222 2367899999999865311 1111 122 26999999999887665533211
Q ss_pred -------CC-----------c--c-eEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 94 -------NV-----------H--A-DLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 -------~~-----------~--~-~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
|- . . .++..|+.+..+-. .+.+||+|++.... ......
T Consensus 112 ~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----------------E~a~~d 174 (256)
T PF01234_consen 112 KYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----------------ESACKD 174 (256)
T ss_dssp HHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----------------HHH-SS
T ss_pred HHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----------------HHHcCC
Confidence 10 0 1 46667776543211 12358888873221 111123
Q ss_pred HHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHHHHcCCcEEEEEe--cCCCCccEEEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQMMEKGYAARIVVQ--RSTEEENLHIIKF 211 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~l~~~ 211 (256)
.+.+...++++.++|||||.++++..-.. ..+.+.+.+++.|+.+..... .....+.++++.+
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a 254 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVA 254 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEE
Confidence 45688999999999999999998663211 356899999999998777664 2223344555544
Q ss_pred E
Q 025207 212 W 212 (256)
Q Consensus 212 ~ 212 (256)
+
T Consensus 255 ~ 255 (256)
T PF01234_consen 255 R 255 (256)
T ss_dssp E
T ss_pred e
Confidence 3
No 250
>PRK13699 putative methylase; Provisional
Probab=98.15 E-value=2.2e-05 Score=64.51 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=63.8
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+..+.++++|+|+.+|||...-..... . . ..+....+....++.++.++|||||.+++.. ...
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~-~----~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~-~~~ 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQG-R----T-IAGDKTDEWLQPACNEMYRVLKKDALMVSFY-GWN 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCC-c----c-cccccHHHHHHHHHHHHHHHcCCCCEEEEEe-ccc
Confidence 5788999998888788999999999999741110000 0 0 0111122346788999999999999888643 344
Q ss_pred CHHHHHHHHHHcCCcEE--EEEec
Q 025207 178 DPSQICLQMMEKGYAAR--IVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~--~~~~~ 199 (256)
....+...+++.||... .++.+
T Consensus 76 ~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 76 RVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cHHHHHHHHHHCCCEEeeEEEEEC
Confidence 45566778888898754 35543
No 251
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=2.8e-05 Score=62.74 Aligned_cols=125 Identities=21% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHH-
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEA- 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~- 92 (256)
+.+|-.. ....+..+++.+. ..++...+|+|||.|...+.++... ++ ..+|||+.+...+.|+.....
T Consensus 20 ~~~YGEi--~~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~-----~~~~~~GIEi~~~~~~~a~~~~~~~ 89 (205)
T PF08123_consen 20 SETYGEI--SPEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQT-----GCKKSVGIEILPELHDLAEELLEEL 89 (205)
T ss_dssp CCCGGGC--HHHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH-------SEEEEEE-SHHHHHHHHHHHHHH
T ss_pred Ccceeec--CHHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHc-----CCcEEEEEEechHHHHHHHHHHHHH
Confidence 3344443 3444455555543 3578999999999999988777653 33 499999999998888664432
Q ss_pred ------cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 93 ------HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 93 ------~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.. .++..+|+.+... ...-...|+|++|---+ +.. +...+......
T Consensus 90 ~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---------------------~~~-l~~~L~~~~~~ 147 (205)
T PF08123_consen 90 KKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---------------------DPD-LNLALAELLLE 147 (205)
T ss_dssp HHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----------------------HH-HHHHHHHHHTT
T ss_pred HHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc---------------------CHH-HHHHHHHHHhc
Confidence 3332 2677888876421 11114579999973211 011 33344556667
Q ss_pred cccCeEEEE
Q 025207 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
||+|-+++.
T Consensus 148 lk~G~~IIs 156 (205)
T PF08123_consen 148 LKPGARIIS 156 (205)
T ss_dssp S-TT-EEEE
T ss_pred CCCCCEEEE
Confidence 898888765
No 252
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=4.9e-05 Score=59.33 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=80.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchh------hhcC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLE------KRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~------~~~~ 113 (256)
.|+.+|||+||..|.++.-+.+.. .|+..|.|+|+-.-.- -.|. .++.+ |+.+... ....
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~---~p~g~v~gVDllh~~p--------~~Ga--~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRV---NPNGMVLGVDLLHIEP--------PEGA--TIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhh---CCCceEEEEeeeeccC--------CCCc--ccccccccCCHHHHHHHHHhCCC
Confidence 588999999999999987766664 4888999999853210 0111 33333 4443321 1123
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
-..|+|+++..-..+.. ... ++....+.-..++......++|+|.++.-.........+.+.|.+..-.+
T Consensus 135 r~VdvVlSDMapnaTGv-r~~---------Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~V 204 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV-RIR---------DHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNV 204 (232)
T ss_pred CcccEEEeccCCCCcCc-chh---------hHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhc
Confidence 56899999753211111 000 00001112333455556778999999987777777778888887764344
Q ss_pred EEEEec
Q 025207 194 RIVVQR 199 (256)
Q Consensus 194 ~~~~~~ 199 (256)
..+.+.
T Consensus 205 k~vKP~ 210 (232)
T KOG4589|consen 205 KKVKPD 210 (232)
T ss_pred EeeCCc
Confidence 444443
No 253
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00012 Score=58.47 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++.+||++|-|-|.+. ..+.++.|. .-+-+|.+|+.++.+++..-...-+..+..+...+.+....++.||-|+
T Consensus 100 tkggrvLnVGFGMgIid----T~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIID----TFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHH----HHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 47899999999999964 444444554 6778899999999887753322222367778888888777788999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-+- |.. .-+....+.+.+.++|||+|++-+
T Consensus 175 yDT-y~e--------------------~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 175 YDT-YSE--------------------LYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eec-hhh--------------------HHHHHHHHHHHHhhhcCCCceEEE
Confidence 741 100 012245667788999999999887
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.001 Score=54.22 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
...|.+| -.+-...+++.+.- ..+++.|||+|+.||.|+-.+.+. + ...|+|+|..-..+.-- +. +.
T Consensus 56 ~~~yVSR--G~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~k---LR-~d 122 (245)
T COG1189 56 EQPYVSR--GGLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHWK---LR-ND 122 (245)
T ss_pred CcCcccc--HHHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCHh---Hh-cC
Confidence 3444454 23333445555542 358899999999999999887775 2 24899999876544321 11 11
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...|+....++...+..|+++|+--|. .+..++..+..+++++|.++...
T Consensus 123 ~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI------------------------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI------------------------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CcEEEEecCChhhCCHHHcccCCCeEEEEeehh------------------------hHHHHHHHHHHhcCCCceEEEEe
Confidence 222 34445555555444456889999976553 26788899999999998877644
Q ss_pred e-CCC--------------------CHHHHHHHHHHcCCcEEEEE
Q 025207 174 L-TAN--------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~-~~~--------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
. .+. -...+.+++...||....+.
T Consensus 179 KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 179 KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 2 111 12356667777788776544
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.93 E-value=0.00052 Score=58.15 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=89.4
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+...+... +. -.+.++|+++.+++..+.|... .++.+|+.+.........+|+++..||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G~-~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----GF-EIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc----CC-EEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999987766654 22 2589999999999988887632 355667666543211357999999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
....+....... ..+.++ ..+..+++ +.+.++|. +++++.... ....+.+.+++.||.....
T Consensus 72 Cq~fS~ag~~~~------~~d~r~-~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 72 CQPFSIAGKRKG------FEDTRG-TLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred ChhhhHHhhcCC------CCCchH-HHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 876555321100 011111 12334443 33445776 333233221 2346777888889876443
Q ss_pred Ee------cCCCCccEEEEEEEec
Q 025207 197 VQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~~~ 214 (256)
.. ..+...+++++...++
T Consensus 142 ~l~a~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 142 LLNASDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred EEEHHHcCCCCCCcEEEEEEEeCC
Confidence 32 2345677777766554
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.90 E-value=0.00053 Score=59.04 Aligned_cols=132 Identities=20% Similarity=0.288 Sum_probs=89.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHc-----CCcc---eEEEcchhhchhhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAH-----NVHA---DLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~-----~~~~---~~~~~d~~~~~~~~ 111 (256)
+.-.+||-+|-|.|.-+.++.+ +| -.+|+-+|++|+|++.++++-... ...+ .++..|+.+++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-----yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-----YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-----CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 3558999999999996555444 56 358999999999999999654332 1222 78899999987653
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CCCH---HHHHHHHH
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-ANDP---SQICLQMM 187 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---~~~~~~~~ 187 (256)
...||+||.+.|=-..+.. +.-....+-..+.+.|+++|++++-..+ +... -.+.+-++
T Consensus 363 -~~~fD~vIVDl~DP~tps~----------------~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik 425 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSI----------------GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIK 425 (508)
T ss_pred -cccccEEEEeCCCCCCcch----------------hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHH
Confidence 4589999998763222221 1122445666778899999999884321 1111 24567778
Q ss_pred HcCCcEE
Q 025207 188 EKGYAAR 194 (256)
Q Consensus 188 ~~g~~~~ 194 (256)
+.|+...
T Consensus 426 ~AG~~~~ 432 (508)
T COG4262 426 SAGYRVW 432 (508)
T ss_pred hCcceee
Confidence 8887653
No 257
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.90 E-value=0.00017 Score=63.53 Aligned_cols=103 Identities=24% Similarity=0.277 Sum_probs=75.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+.+|||.-+|+|.=++-.++.+.. ...|++-|+|+++++.+++|++.|++.. .+.+.|+...+. .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCE
Confidence 4579999999999988877777431 2479999999999999999999999876 677888877663 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|=.+| |.. ...++..+.+.++.||.+.+..
T Consensus 125 IDlDP-fGS------------------------p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDP-FGS------------------------PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE---SS--------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCC------------------------ccHhHHHHHHHhhcCCEEEEec
Confidence 97764 321 3577888889999999999955
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.89 E-value=5.3e-05 Score=62.21 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=55.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|+|+|||.--+++..... .+++.++|+||+..+++.....+...+++.++...|+....+ ....|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~----~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~---~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE----APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP---KEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS----STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT---TSEESEEE
T ss_pred CCCchhhhhhccCCceehhhccc----CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC---CCCcchhh
Confidence 35899999999998876443322 567899999999999999999999889888888888877644 36789998
Q ss_pred E
Q 025207 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
.
T Consensus 177 l 177 (251)
T PF07091_consen 177 L 177 (251)
T ss_dssp E
T ss_pred H
Confidence 7
No 259
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00017 Score=64.24 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=94.4
Q ss_pred ccccceeeeccCCccccCC-c-hHHHHHHHHHhhccc--ccCCCC-EEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025207 4 RTAQIRLVSSHPEVYEPCD-D-SFALVDALLADRINL--VEHHPV-LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~-~-~~~l~~~l~~~~~~~--~~~~~~-~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~ 78 (256)
..-.+.+...-..+|.||- + .+.+.+++.-. ..+ ...+-. +++.+|||+..+...+.+. .--.|+.+|+
T Consensus 6 ~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~-~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~ 79 (482)
T KOG2352|consen 6 EQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLS-GSIMKYLSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDS 79 (482)
T ss_pred cccccCcchhhhhhccccCCChHHHHHHHHHHH-HHHHHhhchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccc
Confidence 3344555555577888884 3 55555543211 111 113445 9999999999876655543 2237999999
Q ss_pred CHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 79 NPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
|+..++.+...-........+...|+... .+.+++||+|+.-+-+...-.++... +. .......+.+
T Consensus 80 S~V~V~~m~~~~~~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlDal~~de~a~------~~-----~~~v~~~~~e 146 (482)
T KOG2352|consen 80 SSVVVAAMQVRNAKERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLDALFEDEDAL------LN-----TAHVSNMLDE 146 (482)
T ss_pred cHHHHHHHHhccccCCcceEEEEecchhc--cCCCcceeEEEecCccccccCCchhh------hh-----hHHhhHHHhh
Confidence 99999887654322122237778887665 45578999999854433322222110 00 0135677889
Q ss_pred HhhccccCeEEEEEEe
Q 025207 159 ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 159 ~~~~LkpgG~l~~~~~ 174 (256)
++++|++||+.+.++.
T Consensus 147 Vsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 147 VSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHhccCCEEEEEEe
Confidence 9999999999887765
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=97.87 E-value=5.5e-05 Score=64.38 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=56.1
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|++||||......... ...+. ...-...+..++..+.++|||||.+++.... .
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~-~ 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL----IEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMNST-E 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccc----ccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc-h
Confidence 7899999998766667899999999999742110000 00000 0111234568899999999999999986433 2
Q ss_pred CHHHHHHHHHHcCCcE
Q 025207 178 DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~ 193 (256)
.... ...+.+.+|..
T Consensus 84 ~~~~-~~~~~~~~f~~ 98 (284)
T PRK11524 84 NMPF-IDLYCRKLFTI 98 (284)
T ss_pred hhhH-HHHHHhcCcce
Confidence 2223 34455566643
No 261
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.85 E-value=9e-05 Score=63.48 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
....+|+|.|.|.++-.+.. ++|. |-+++.+...+-.+..++. .| ...+.+|.++..| +-|+|+.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~----~fp~--ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P-----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS----KYPH--IKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP-----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH----hCCC--CceeecCHHHHHhhhhhhc-CC--cceecccccccCC-----CcCeEEEE
Confidence 48999999999998655444 3774 7788888777777777664 44 3667778777643 34799885
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-..++.++. ...+++++|.+.|+|||.++++..
T Consensus 244 WiLhdwtDe-------------------dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDE-------------------DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChH-------------------HHHHHHHHHHHhCCCCCEEEEEec
Confidence 444444432 367999999999999999999775
No 262
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0002 Score=61.69 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..+|+|.-+|||.=+|-++... +...++.-|+||++++.+++|+..| +.+..+++.|+...+... ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~----~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET----GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc----CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEec
Confidence 7999999999999888777763 3338999999999999999999999 445577778888776553 368999966
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+| |.. ..-+++...+.++.||.+.+..
T Consensus 128 DP-FGS------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DP-FGS------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCC------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 53 432 2355777777888899999854
No 263
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.76 E-value=0.00035 Score=59.63 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|.+.+++.+. ..++..++|.=+|.|.-+..+++.+ ++++|+|+|.++.+++.+++++...+-...++++++.
T Consensus 7 Vll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l----~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQL----GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 34455555553 2577899999999999998888764 3479999999999999999988755434488888887
Q ss_pred hchhhh---cCCCccEEEECC
Q 025207 106 SGLEKR---LAGLVDVMVVNP 123 (256)
Q Consensus 106 ~~~~~~---~~~~fD~Ii~np 123 (256)
+..... ...++|.|+.|.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHhcCCCcccEEEEec
Confidence 764322 235699999854
No 264
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.00085 Score=57.79 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.++||+||++|.++-.+.+. ++.|+|||..+-. . .+... -....+..|.....++ .+.+|.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~----~L~~~-~~V~h~~~d~fr~~p~--~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-Q----SLMDT-GQVEHLRADGFKFRPP--RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-H----hhhCC-CCEEEEeccCcccCCC--CCCCCEEE
Confidence 58899999999999998777765 5699999965422 1 12111 1236666676665443 46899999
Q ss_pred ECCC
Q 025207 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 cDmv 279 (357)
T PRK11760 276 CDMV 279 (357)
T ss_pred Eecc
Confidence 9753
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.73 E-value=0.00034 Score=57.97 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=88.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.|+-+| -.-..+++++.- . -|+ +|..+||++..++...+.+++.|.++ +.+..|+.+++++....+||+++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt--~-mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT--G-MPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc--C-CCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 677899888 444445444432 1 233 89999999999999999999999985 89999999998887778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeCCCCH--HHHHH-HHHHcCCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLTANDP--SQICL-QMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~--~~~~~-~~~~~g~~ 192 (256)
.+||+- ...+..|+..-...||.- |++.+.....+.. .++++ ++.++|+-
T Consensus 227 TDPpeT----------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPET----------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhh----------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 999974 223667788878888877 7777754322211 14455 44555543
No 266
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.66 E-value=0.0012 Score=49.47 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=65.4
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcC-CCccEEEECC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLA-GLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~fD~Ii~np 123 (256)
++|+|||+|... .+..... ....++++|+++.++..++......... ..+...|......++.. ..||++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999965 2333211 1147999999999998855544321111 25666665542123223 4799994432
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+.... ....+..+.+.|+|+|.+++.....
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP----------------------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC----------------------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 211100 3677889999999999999866543
No 267
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.65 E-value=0.00097 Score=56.09 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=60.7
Q ss_pred CCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCc--ceEEEcchhhchhhhcCCCcc
Q 025207 42 HPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.+.+|+=||||.=-++ +.+++. ..+++.|+++|+++++++.+++-+. ..++. ..++.+|..+...+ -..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCC
Confidence 3569999999965443 333322 2456789999999999999998877 33443 38999998776433 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.. ++.+... ..-.+++..+.+.++||..+++=
T Consensus 195 vV~lA------------------alVg~~~--e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLA------------------ALVGMDA--EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-------------------TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEh------------------hhccccc--chHHHHHHHHHhhCCCCcEEEEe
Confidence 99873 1222111 11478899999999999998884
No 268
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.60 E-value=0.0016 Score=56.22 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=88.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+++|+.||.|.+.+.+.+. +. -.+.++|+++.+++.-+.|.. ....+|+.+......++.+|+++..||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~-~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GF-EVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TE-EEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc----Cc-EEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 6999999999988777665 21 269999999999999888875 678888887754322226999999998
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEEEEe
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
-...+..... .. ..+.++ ..+..+++-+ +.++|.-+++=..+... ....+.+.|.+.||.+.....
T Consensus 71 CQ~fS~ag~~-----~~-~~d~r~-~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 71 CQGFSIAGKR-----KG-FDDPRN-SLFFEFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp -TTTSTTSTH-----HC-CCCHTT-SHHHHHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CceEeccccc-----cc-cccccc-hhhHHHHHHH-hhccceEEEecccceeeccccccccccccccccccceeehhccc
Confidence 7765543210 00 111111 1233444433 45688654442222221 135677888888987654331
Q ss_pred ------cCCCCccEEEEEEEecC
Q 025207 199 ------RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 199 ------~~~~~~~~~l~~~~~~~ 215 (256)
..+...+++++...++.
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG
T ss_pred cHhhCCCCCceeeEEEEEECCCC
Confidence 22345677777666654
No 269
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.59 E-value=0.0024 Score=52.81 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=73.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CC--cceEEEcchhhchhh-hcC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NV--HADLINTDIASGLEK-RLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~--~~~~~~~d~~~~~~~-~~~ 113 (256)
...+|||+|+|+|..++.++..+ ++++...|.. ..++..+.+...+ +. ...+...+....... +..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 35689999999999998888863 4588888864 4444444443333 22 223333333332221 122
Q ss_pred CC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHHHHHHHHcCC
Q 025207 114 GL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQICLQMMEKGY 191 (256)
Q Consensus 114 ~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~g~ 191 (256)
.. ||+|++--+++.... ...++..+..+|..+|.+++..+-.+. ..++...+.+..+
T Consensus 160 ~~~~DlilasDvvy~~~~---------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~ 218 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEES---------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDL 218 (248)
T ss_pred CCcccEEEEeeeeecCCc---------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhh
Confidence 34 899998666554333 456777888888899977776653332 2345555555444
Q ss_pred c
Q 025207 192 A 192 (256)
Q Consensus 192 ~ 192 (256)
.
T Consensus 219 ~ 219 (248)
T KOG2793|consen 219 K 219 (248)
T ss_pred c
Confidence 3
No 270
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.56 E-value=0.0024 Score=49.82 Aligned_cols=138 Identities=21% Similarity=0.184 Sum_probs=80.2
Q ss_pred ecccccHHHHHHHHHhcccCCCceEEEEe--CCHHHHHH---HHHHHHHcCC-cc-eEEEcchhhchhhh--cCCCccEE
Q 025207 49 VGCGSGYVITSLALMLGQEVPGVQYIATD--INPYAVEV---TRKTLEAHNV-HA-DLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 49 lGcG~G~~~~~la~~l~~~~~~~~v~giD--~~~~~i~~---a~~~~~~~~~-~~-~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
+|=|.-.++.++++.... ...++++- ..++..+. +..|++...- .. -++..|+.+..... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 455555666666665432 34555554 44444433 3356554421 12 34455666554333 45789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHcCCcEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 197 (256)
+.|.|+.-..... ...... .....+..++..+..+|+++|.+.+....... .-.+....++.|+......
T Consensus 80 iFNFPH~G~~~~~-~~~~i~-------~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 80 IFNFPHVGGGSED-GKRNIR-------LNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred EEeCCCCCCCccc-hhHHHH-------HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 9999986411100 000000 11346788999999999999999997764432 2357777777888765443
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.011 Score=49.86 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh---cCCCc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR---LAGLV 116 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~f 116 (256)
.+++...+|.--|.|.-+..+...+ .+.++++|+|.++.+++.|++.+...+-...+++.++.+..... .-+++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l---~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKL---PDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhC---CCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 3678999999999999877777664 23467999999999999999998876655588888776654322 23567
Q ss_pred cEEEE
Q 025207 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
|-|+.
T Consensus 98 DGiL~ 102 (314)
T COG0275 98 DGILL 102 (314)
T ss_pred eEEEE
Confidence 87776
No 272
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.46 E-value=0.00046 Score=60.45 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++..++|+|||.|....+++.. .++.++|+|+++.-+..+.......+++. .++..|+.+. ++.+..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-----~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~--~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-----KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM--PFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-----ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC--CCCccccCc
Confidence 56779999999999987776653 56789999999988877665544444443 5677777665 455789999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+.-.-.+.+ ....++.++.+.++|||..+..
T Consensus 182 v~~ld~~~~~~---------------------~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 182 VRFLEVVCHAP---------------------DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEEeecccCC---------------------cHHHHHHHHhcccCCCceEEeH
Confidence 97732111111 1567889999999999999873
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.44 E-value=0.0019 Score=61.57 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc---ccCC-----CceEEEEeCCH---HHHHHH-----------HHHHHH-----c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLG---QEVP-----GVQYIATDINP---YAVEVT-----------RKTLEA-----H 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~---~~~~-----~~~v~giD~~~---~~i~~a-----------~~~~~~-----~ 93 (256)
+..-+|+|+|-|+|...+.+.+... +..+ ..+++++|..| +.+..+ +...+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999998887776652 1222 46899999755 222222 121111 1
Q ss_pred CC----------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 94 NV----------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 94 ~~----------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|+ ..++..+|+.+.+... ...||+++.++ |.+..+++ .....++..+.+++
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~-FsP~~np~-----------------~W~~~~~~~l~~~~ 196 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDG-FAPAKNPD-----------------MWSPNLFNALARLA 196 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCC-CCCccChh-----------------hccHHHHHHHHHHh
Confidence 21 2267788988876654 35799999974 22222221 12578899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
+|||.+.-. +....+++.+...||++..
T Consensus 197 ~~~~~~~t~----t~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 197 RPGATLATF----TSAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred CCCCEEEEe----ehHHHHHHHHHHcCCeeee
Confidence 999999853 3567899999999998653
No 274
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.40 E-value=9e-05 Score=58.81 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.++||+|+|.|.++..++.... .|+++|.|..|....++. +. +++ ...+.... +-++|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~y--nVl--~~~ew~~t--~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----NY--NVL--TEIEWLQT--DVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----CC--cee--eehhhhhc--CceeehHH
Confidence 4668999999999999876665532 699999999998876553 11 121 11122111 23689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc-CeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK-RGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 173 (256)
|--- ..+ +...-++++.++.+|+| +|++++..
T Consensus 175 clNl--------------LDR-------c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNL--------------LDR-------CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHH--------------HHh-------hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 7100 000 11135778999999999 89887643
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=97.35 E-value=0.001 Score=56.58 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... +.+++.|||+.||+|.-++++.++ +-+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~----S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILAS----SNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHH
Confidence 455666655554 469999999999999988766655 3479999999999999999985
No 276
>PRK13699 putative methylase; Provisional
Probab=97.31 E-value=0.0015 Score=53.76 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=49.1
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.|..=...|.+.++... ..++..|||+.||+|..++++.+. +-+.+|+|++++..+.+.+++..
T Consensus 144 hp~~kP~~l~~~~i~~~----s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 144 HPTEKPVTSLQPLIESF----THPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCcHHHHHHHHHHh----CCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHH
Confidence 34444456666666544 368999999999999988776654 34799999999999999988864
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.26 E-value=0.0013 Score=53.55 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|..=...|++.++... ..++..|||+.||+|+.++++.++ +-+.+|+|++++.++.|++
T Consensus 173 ~~~kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 3333455666665554 468999999999999988776665 3379999999999998864
No 278
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.016 Score=47.58 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=95.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.-+...|+.|.-|.++..+-....+... + -.+...+|+|+|+..-+.-+...+..++.-..++.+|++...++..
T Consensus 46 LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~-~--~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t 122 (321)
T COG4301 46 LFEQITRLPEYYPTRTEAAILQARAAEIAS-I--TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT 122 (321)
T ss_pred HHHHHhccccccCchhHHHHHHHHHHHHHH-h--hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH
Confidence 344456788999888887766555544332 2 2478999999999998877777776665567899999999998876
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcCCCccEEEE--CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 87 RKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVV--NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD~Ii~--npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.+... ++....+.+|....+....... --+++ .....+.++ .....|+.++...
T Consensus 123 a~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~Rl~~flGStlGN~tp-------------------~e~~~Fl~~l~~a 182 (321)
T COG4301 123 ATAILREYPGLEVNALCGDYELALAELPRGG-RRLFVFLGSTLGNLTP-------------------GECAVFLTQLRGA 182 (321)
T ss_pred HHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eEEEEEecccccCCCh-------------------HHHHHHHHHHHhc
Confidence 6666543 4455777888776654433222 22222 111111111 1256889999999
Q ss_pred cccCeEEEE
Q 025207 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
|+||-.+.+
T Consensus 183 ~~pGd~~Ll 191 (321)
T COG4301 183 LRPGDYFLL 191 (321)
T ss_pred CCCcceEEE
Confidence 999999887
No 279
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00066 Score=56.61 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+..++|+|||.|-.+ .. .|.+.++|.|++...+..+++. +.. .+...|+.... +.+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----~~~-~~~~ad~l~~p--~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----GGD-NVCRADALKLP--FREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----CCc-eeehhhhhcCC--CCCCccccchh
Confidence 5789999999999842 11 4778999999999988877652 111 47777887763 34688999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
--..++... ......+++++.+.|+|||...+...
T Consensus 110 iavihhlsT------------------~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 110 IAVIHHLST------------------RERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhh------------------HHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 433332222 22357889999999999999777554
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.16 E-value=0.004 Score=49.97 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~------~~ 113 (256)
+++.|+|+|.-.|.-++..|.++...+++++|+|+|++...... +.++.+.+ ..+++++|..+...-. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 68999999999999888888877655577899999996544321 12222222 2389999876543210 12
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
....+|+.+--+.+ ......++....++++|+++++
T Consensus 110 ~~~vlVilDs~H~~----------------------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTH----------------------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS--------------------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCCccH----------------------HHHHHHHHHhCccCCCCCEEEE
Confidence 34557766422110 1145567778999999999997
No 281
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.001 Score=59.88 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|+-+|.|-|-+.-+..+....-..+.+++++|.+|.++-..+. ....+++. .++..|+.....+ .++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap--~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP--REQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc--hhhccchH
Confidence 5678888999998765555544333457899999999999977655 33334443 8999999888644 36889998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+- +.|.....+.....|..+.+.|||+|+.+=
T Consensus 445 SE-------------------LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SE-------------------LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HH-------------------hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 72 122112223457889999999999998774
No 282
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=97.14 E-value=0.009 Score=46.31 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.+.+.. .+..+|+=|||=+-...+.- ...++.+++..|++..--.. +-+ .++.-|
T Consensus 12 ~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~-----~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA-----LDDTRIACLSTPSLYEALKK-----ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHh-----hcCCCccEEEEeecchHHhc--------CCc-ceEECC
Confidence 344555555532 35689999988776653222 12456789999998775432 111 244445
Q ss_pred hhhc--hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 104 IASG--LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 104 ~~~~--~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.... .+....++||+||++|||.. .+.+.+....+..++++++.+++++. ..+...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~---------------------~ec~~k~a~ti~~L~k~~~kii~~Tg-~~~~~~ 130 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS---------------------EECLTKTAETIRLLLKPGGKIILCTG-EEMEEL 130 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC---------------------HHHHHHHHHHHHHHhCccceEEEecH-HHHHHH
Confidence 4443 22233689999999999942 23356667778888899999998653 222333
Q ss_pred HHHHHHHcCCcEEEEEec
Q 025207 182 ICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~ 199 (256)
+.+.+ +++.....+.
T Consensus 131 ~~~ll---~~~~~~f~p~ 145 (162)
T PF10237_consen 131 IKKLL---GLRMCDFQPE 145 (162)
T ss_pred HHHHh---CeeEEeEEec
Confidence 33333 5554444333
No 283
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0086 Score=52.05 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=94.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~ 121 (256)
..+++|+.||.|.+.+.+... +.+ -+.++|+++.+++.-+.|... ..++..|+.....+.... .+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----gf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----GFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----CCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEe
Confidence 468999999999987666554 222 589999999999988877642 367777777665443333 7999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHHcCCcEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~~g~~~~ 194 (256)
.||....+..... ....++++. +-.-+.++...++| .++++.... ...+.+.+.|++.||.+.
T Consensus 74 GpPCQ~FS~aG~r------~~~~D~R~~--L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 74 GPPCQDFSIAGKR------RGYDDPRGS--LFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred CCCCcchhhcCcc------cCCcCccce--eeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcch
Confidence 9998765543211 112222221 11223344556777 444434322 245678888889998632
Q ss_pred E-EE-----ecCCCCccEEEEEEEec
Q 025207 195 I-VV-----QRSTEEENLHIIKFWRD 214 (256)
Q Consensus 195 ~-~~-----~~~~~~~~~~l~~~~~~ 214 (256)
. +. -..+..++++++-..++
T Consensus 144 ~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 144 FNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred HheeeHHhcCCCCCccEEEEEEecCc
Confidence 1 11 23455678888766553
No 284
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.0063 Score=51.55 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------
Q 025207 25 FALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------ 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------ 93 (256)
..+...+++++..+. .+...+||-+|||.|.++..++.+ ++ .+-|=|.|--|+=. ..+..|
T Consensus 128 d~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~----G~--~~qGNEfSy~Mli~--S~FiLN~~~~~n 199 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL----GF--KCQGNEFSYFMLIC--SSFILNYCKQEN 199 (369)
T ss_pred hhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh----cc--cccccHHHHHHHHH--HHHHHHhhccCC
Confidence 444445555554432 235689999999999999888876 44 33344665555421 111111
Q ss_pred CCcc-------------------------------------eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCccccc
Q 025207 94 NVHA-------------------------------------DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGR 135 (256)
Q Consensus 94 ~~~~-------------------------------------~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~ 135 (256)
.+.. .+..||+.+.-... ..+.||+|+.+ |+....
T Consensus 200 q~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa----- 272 (369)
T KOG2798|consen 200 QFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTA----- 272 (369)
T ss_pred cEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeech-----
Confidence 1100 11223433332211 12357777764 332111
Q ss_pred ccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC------------CHHHHHHHHHHcCCcEEE
Q 025207 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN------------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~------------~~~~~~~~~~~~g~~~~~ 195 (256)
.....+++.+..+|||||+-+=+.| ..+ ..+++...+...||+...
T Consensus 273 --------------~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 273 --------------HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred --------------HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 2366889999999999999774332 011 246788888888998644
No 285
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.01 E-value=0.0011 Score=47.77 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
.||+||.||||............. ....+.+..+++...++| +|.+.+++|..= ....+++.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~-------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK-------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc-------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 699999999998766532211100 013456778899999888 999988887322 234556665443
No 286
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.96 E-value=0.013 Score=46.36 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH----H--HHHcCCcc-eEEEcchhhchhhhc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK----T--LEAHNVHA-DLINTDIASGLEKRL 112 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~----~--~~~~~~~~-~~~~~d~~~~~~~~~ 112 (256)
-+++.+|+|+-.|.|.++.-++..++ |+..|+++-..+...-..+. + ..+....+ +.+-.+..... .
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg---p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~ 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG---PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---A 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC---CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---C
Confidence 36899999999999999988888764 55588887654442111111 1 11111111 33333333322 1
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D 178 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~ 178 (256)
.+..|+++.+--|+.... .++.. ....++...+++.|||||++.+..+... .
T Consensus 120 pq~~d~~~~~~~yhdmh~----------k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHN----------KNIHP----ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred CCcccccccchhhhhhhc----------cccCc----chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 356677766544432221 11111 2367788889999999999999775322 2
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 025207 179 PSQICLQMMEKGYAARIV 196 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~ 196 (256)
..-+.+..+..||.....
T Consensus 186 ~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 186 PAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hHHHHHHHHhhcceeeee
Confidence 234566667778876543
No 287
>PHA01634 hypothetical protein
Probab=96.94 E-value=0.0051 Score=45.19 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=53.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
-.+++|+|+|.+.|.-++.++.. +. -.|+++|.++...+..+++++.+.+-. -+...++.. . =+.||+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----GA-K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~--Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----GA-SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E--YEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----Cc-cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c--CCCcceE
Confidence 47899999999999999988876 22 379999999999999999988775432 232332221 1 2578888
Q ss_pred EEC
Q 025207 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
+.+
T Consensus 97 ~iD 99 (156)
T PHA01634 97 VMD 99 (156)
T ss_pred EEE
Confidence 764
No 288
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.93 E-value=0.013 Score=48.91 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCEEEEecccccH--HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhc----CC
Q 025207 42 HPVLCMEVGCGSGY--VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRL----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~--~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~----~~ 114 (256)
.-...||+|||--. ..-++++.. .|+++|+=+|++|-.+.-++..+..+.-. ..++.+|+.+...-+. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~---~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRV---APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhh---CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 34789999999542 444455443 68999999999999999888877655421 2789999877632111 12
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
-+| .++.....++.++.+ ....++..+.+.|.||..+++++.+...
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~------------------dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDD------------------DPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGC------------------THHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cCCCCCCeeeeeeeeeccCCCcc------------------CHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 233 233333332222211 1578899999999999999998876653
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0062 Score=51.17 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCc---ceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|.+....++. . .- -.+.-+|++...++..++..... +.. ..++.+|...+......+.
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~--~v-e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-K--SV-ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-c--cc-cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 36799999999999986555554 1 11 26899999999999988876643 332 3788899988887766789
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+.+-- ++ ..+.. ..+...+.+.+.+.||++|+++....
T Consensus 196 ~dVii~dss-----dp----vgpa~--------~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 196 FDVIITDSS-----DP----VGPAC--------ALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred ceEEEEecC-----Cc----cchHH--------HHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999998420 00 00111 12467788889999999999998653
No 290
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.84 E-value=0.0038 Score=51.16 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=47.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---C-C------cceEEEcchhhchhhhcC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---N-V------HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~-~------~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||.=+|-|.-++-++.. |++|+++|-||......++-+... . + ..+++++|..+.+. ..+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcC
Confidence 59999999999998888765 468999999999877766544332 1 2 12899999988876 446
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|+++|=|-+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999987644
No 291
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.008 Score=52.05 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHHc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.++.++++.+.......+-.++|+|.|.|.+...+...+.+.+| .+++..+|+|++..+.-+++++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344445555555444345678999999999998888887766555 689999999999988877777644
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.041 Score=41.63 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
-..++.++..+ +..+..+.+|+|+|.|.+-++.++... ..-+|+|++|=.+..++-..-+.++.. .+...
T Consensus 58 teQv~nVLSll---~~n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rk 129 (199)
T KOG4058|consen 58 TEQVENVLSLL---RGNPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRK 129 (199)
T ss_pred HHHHHHHHHHc---cCCCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhh
Confidence 33344445544 346778999999999999888777632 257899999999988887777777654 77777
Q ss_pred chhhc
Q 025207 103 DIASG 107 (256)
Q Consensus 103 d~~~~ 107 (256)
|+...
T Consensus 130 dlwK~ 134 (199)
T KOG4058|consen 130 DLWKV 134 (199)
T ss_pred hhhhc
Confidence 77665
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.68 E-value=0.011 Score=51.14 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++++|+=.|+| .|..++.+++.+ +++|+++|.+++-.+.|++.- .+ .++...-.+..... .+.||+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lG----Ad-~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLG----AD-HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhC----Cc-EEEEcCCchhhHHh-HhhCcEE
Confidence 688999999887 345666666653 479999999999999888742 22 34443211222221 2349999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..-| ...+....+.|++||+++++-..
T Consensus 234 i~tv~----------------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG----------------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC----------------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 98533 24467778899999999997654
No 294
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.67 E-value=0.0036 Score=53.49 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.5
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+++.+. ..++..++|.=.|.|.-+.++.+. .++++++|+|.++.+++.+++++....-...++++++.+.
T Consensus 9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~----~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK----LPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-----TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh----CCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 334444443 367889999999999988777766 4568999999999999999887764433447888887665
Q ss_pred hhh---h-cCCCccEEEEC
Q 025207 108 LEK---R-LAGLVDVMVVN 122 (256)
Q Consensus 108 ~~~---~-~~~~fD~Ii~n 122 (256)
... . ...++|.|+.+
T Consensus 82 ~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHccCCCccCEEEEc
Confidence 432 2 23579999884
No 295
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.61 E-value=0.011 Score=53.31 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-..|+|..+|.|.|+.++... .|..+-.-|..-.-.-..+...|+-... .|.-+..+. .+.+||+|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGLIG~y--hDWCE~fsT-YPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGLIGVY--HDWCEAFST-YPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcccchhc--cchhhccCC-CCcchhhee
Confidence 34478999999999986544332 2444433333211112223333432211 233333322 257899998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
++--|....+ ...+..++-++.++|+|+|.+++- .......++..++....|+........
T Consensus 433 A~~lfs~~~~------------------rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 433 ADGLFSLYKD------------------RCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhhhhcc------------------cccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 8765543322 123678899999999999999983 334456678888888888877666544
No 296
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.60 E-value=0.089 Score=43.15 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...|++.|+-=+..+.-+++.+||=+|+++|.---.++..+ .|..-|+++|.++.+=+... |++....+.-.+..|
T Consensus 138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiV---GpeG~VYAVEfs~rsGRdL~-nmAkkRtNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIV---GPEGCVYAVEFSHRSGRDLI-NMAKKRTNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhccc---CCCceEEEEEecccchHHHH-HHhhccCCceeeecc
Confidence 56777777666666667899999999999998644444444 56778999999876543322 222112223455667
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC----
Q 025207 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND---- 178 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---- 178 (256)
+..+.. ...-.-+|+|+++-+.- + -..-+.-+....||+||.++++.....-
T Consensus 214 ArhP~KYRmlVgmVDvIFaDvaqp------------d-----------q~RivaLNA~~FLk~gGhfvisikancidstv 270 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVAQP------------D-----------QARIVALNAQYFLKNGGHFVISIKANCIDSTV 270 (317)
T ss_pred CCCchheeeeeeeEEEEeccCCCc------------h-----------hhhhhhhhhhhhhccCCeEEEEEecccccccc
Confidence 665432 11123579998875421 0 0123344677889999999986643321
Q ss_pred -H----HHHHHHHHHcCCcEEE-EEecCCCCccEEEEEEEe
Q 025207 179 -P----SQICLQMMEKGYAARI-VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 179 -~----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~~ 213 (256)
. ..-.+.|++..++... +........+-+++-..+
T Consensus 271 ~ae~vFa~Ev~klqee~lkP~EqvtLEP~erdha~VvG~Y~ 311 (317)
T KOG1596|consen 271 FAEAVFAAEVKKLQEEQLKPKEQVTLEPFERDHACVVGVYR 311 (317)
T ss_pred cHHHHHHHHHHHHHHhccCchheeccccccCCceEEEEEEe
Confidence 1 1224455555565433 233333444444444433
No 297
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.014 Score=50.31 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
.-.+++|||+|.|.|.-..++-.. +|.. .++.++.|+..-+.. ..+..|-... .....|+.....++. ...
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i----~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDI----WPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhccc----CCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCccchhccCCCccce
Confidence 346788999999999865544444 5542 466677777654433 3344442211 333334333322221 245
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+++++.---..+. +. ...+...++.+..++.|||.++++.++....
T Consensus 186 ytl~i~~~eLl~d---------------~~---ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 186 YTLAIVLDELLPD---------------GN---EKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred eehhhhhhhhccc---------------cC---cchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 6776652111100 01 1124558999999999999999988765543
No 298
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.52 E-value=0.28 Score=44.65 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh-----------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------- 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 110 (256)
..-+++|+.||.|.+.+.+-.. +. -.|.++|+++.+.+.-+.|....+ ...++.+|+.+....
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a----G~-~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI----GG-QCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc----CC-EEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhh
Confidence 3569999999999988776543 22 257899999999888777742111 113444555544210
Q ss_pred ----hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------
Q 025207 111 ----RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------- 176 (256)
Q Consensus 111 ----~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 176 (256)
..-..+|+++..||-...+......... ...+.++..+ ..+..+++ +.+.++|.-+ ++....
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg-~Lf~~~~r-ii~~~kPk~f--vlENV~gl~s~~~ 236 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQG-TLFFDVAR-IIDAKRPAIF--VLENVKNLKSHDK 236 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccc-cHHHHHHH-HHHHhCCCEE--EEeCcHhhhcccc
Confidence 0012589999999987665532211100 0111112221 12233333 3334566633 323211
Q ss_pred -CCHHHHHHHHHHcCCcEEE----------EE-e---cCCCCccEEEEEEEecC
Q 025207 177 -NDPSQICLQMMEKGYAARI----------VV-Q---RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~----------~~-~---~~~~~~~~~l~~~~~~~ 215 (256)
.....+...|.+.||.+.. +. . ..+..++++++...++.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~~ 290 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDL 290 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCCc
Confidence 1234677788888988642 10 0 34567788888776543
No 299
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.50 E-value=0.1 Score=45.17 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=84.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
|+|+.||.|.+...+.+. +.+ +.++|+++.+++..+.|... .++.+|+.+..... -..+|+++..||
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 689999999988766554 334 67899999999988887531 45567777654321 135899999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--------CCHHHHHHHHHHcCCcEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~ 196 (256)
-...+....... + .+.++ .....+++- .+.++|. +++++... .....+...+++.||.....
T Consensus 69 Cq~fS~ag~~~~-----~-~d~r~-~L~~~~~r~-i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 69 CQPFSIAGKRKG-----F-EDTRG-TLFFEIVRI-LKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred CcccchhcccCC-----C-CCchh-hHHHHHHHH-HhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 766554221110 0 01111 122333333 3446775 33333321 12346677788889876433
Q ss_pred Ee------cCCCCccEEEEEEE
Q 025207 197 VQ------RSTEEENLHIIKFW 212 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~ 212 (256)
.. ..+..++++++-..
T Consensus 139 ~l~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 139 VLNAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred EEcHHHCCCCCCccEEEEEEEe
Confidence 21 23456777766555
No 300
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0043 Score=55.53 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh--cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~--~~~~f 116 (256)
.++.+|||.-|++|.-++..++.+.. -.+|++-|.++.+++..++|+..|+... +....|+....... ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 46789999999999999888887642 2379999999999999999999997765 67777776554332 24789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|=.+ ||.. ...||+.+.+.+..||.+.+..
T Consensus 185 DvIDLD-PyGs------------------------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD-PYGS------------------------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC-CCCC------------------------ccHHHHHHHHHhhcCCEEEEEe
Confidence 999776 4432 2366888888899999999854
No 301
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.39 E-value=0.0033 Score=55.27 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~ 109 (256)
+++..|.|+.||.|-+.+.+++. ++.|++-|.++++++..+.|+..|.+.. .+++.|+.+.+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 68999999999999999888876 5899999999999999999999887653 778888777763
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.27 E-value=0.0096 Score=48.35 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=38.8
Q ss_pred ccEEEECCCCCCCCCc---cc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-HHHHHHHHcC
Q 025207 116 VDVMVVNPPYVPTPED---EV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~g 190 (256)
+|+|+++|||...... .. ........+ ...+..++.++.++|||||.+++......... ....+.+..|
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y------~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEY------LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHH------HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHH------HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 5999999999876651 10 000001111 22467788999999999999988654333222 3444444456
Q ss_pred -CcE
Q 025207 191 -YAA 193 (256)
Q Consensus 191 -~~~ 193 (256)
|..
T Consensus 75 ~~~~ 78 (231)
T PF01555_consen 75 GFFL 78 (231)
T ss_dssp T-EE
T ss_pred hhhe
Confidence 654
No 303
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.87 E-value=0.032 Score=41.14 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCccEEEECCCCCC
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLVDVMVVNPPYVP 127 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~fD~Ii~npP~~~ 127 (256)
|.|..++.+++.+ +++|+++|.++...+.+++ .|.. .++.. |+.+...+... ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~----~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKE----LGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHH----TTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHh----hccc-ccccccccccccccccccccccceEEEEecC---
Confidence 4577777777763 3799999999998888765 3422 22222 23333333333 47999987532
Q ss_pred CCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....++...++|+++|+++++....
T Consensus 68 ------------------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ------------------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2467888889999999999976543
No 304
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.80 E-value=0.031 Score=42.17 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
+.+.+|+..+.. ....-|||+|-|+|.- -..|.+..|+-.|+++|-.-.+-..+. .....++.+|+
T Consensus 15 R~~L~~a~~~v~----~~~G~VlElGLGNGRT----ydHLRe~~p~R~I~vfDR~l~~hp~~~------P~~~~~ilGdi 80 (160)
T PF12692_consen 15 RDCLNWAAAQVA----GLPGPVLELGLGNGRT----YDHLREIFPDRRIYVFDRALACHPSST------PPEEDLILGDI 80 (160)
T ss_dssp HHHHHHHHHHTT----T--S-EEEE--TTSHH----HHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-H
T ss_pred HHHHHHHHHHhc----CCCCceEEeccCCCcc----HHHHHHhCCCCeEEEEeeecccCCCCC------CchHheeeccH
Confidence 445566666654 3458899999999994 344555588889999995433222111 11238999999
Q ss_pred hhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 105 ASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 105 ~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++. ......-++-++.-... ++ +.......+-..+..+|.|||+++-
T Consensus 81 ~~tl~~~~~~g~~a~laHaD~G~g~--------~~---------~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 81 RETLPALARFGAGAALAHADIGTGD--------KE---------KDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHHHH-S-EEEEEE----S---------HH---------HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHhHHHHhcCCceEEEEeecCCCC--------cc---------hhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 888765 33333344433211110 00 0111233334556789999999885
No 305
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.69 E-value=0.024 Score=50.20 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=46.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG 107 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~ 107 (256)
..|||+|+|||.+++-++.. +. -.++++|.-.-|.+.|++....||+.. +++.....+.
T Consensus 68 v~vLdigtGTGLLSmMAvra----ga-D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA----GA-DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHh----cC-CeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 57999999999987666655 32 369999999999999999999999865 5555544443
No 306
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.66 E-value=0.09 Score=38.87 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=55.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++..+|+.+.++.. ...||+|+.++ |.+..+++ .| ...++..+.+++++||.+.- +.
T Consensus 34 ~L~~gDa~~~l~~l-~~~~Da~ylDg-FsP~~nPe--------lW---------s~e~~~~l~~~~~~~~~l~T----ys 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQL-DARFDAWYLDG-FSPAKNPE--------LW---------SEELFKKLARLSKPGGTLAT----YS 90 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-S-S-TTTSGG--------GS---------SHHHHHHHHHHEEEEEEEEE----S-
T ss_pred EEEEcHHHHHHHhC-cccCCEEEecC-CCCcCCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----ee
Confidence 78889988877653 47899999985 44433332 11 46889999999999998876 34
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCC
Q 025207 178 DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
....+++.+.+.||.+........+
T Consensus 91 ~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 91 SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp -BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 4677999999999997655544333
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.65 E-value=0.014 Score=48.70 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=46.9
Q ss_pred HHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHH
Q 025207 27 LVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 27 l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
++.++.+.+.... +..+.+|+|+|.|+|.++..+...+.+..| ..+++.+|+|+.+.+.-++++..
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4556666554432 123579999999999999998888876534 47899999999998887777654
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.63 E-value=0.11 Score=45.60 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEE
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~I 119 (256)
++.+|+=+|||. |.+++.+++. ....+|+++|.+++.++.|++........+.-.. +..........+ .+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~----~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKL----LGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEE
Confidence 445999999995 6666666666 3456899999999999999874321111000000 221111122223 69999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
+-.-- ....+.++.+++++||.+.++......
T Consensus 243 ie~~G---------------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG---------------------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC---------------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86311 245788899999999999997755443
No 309
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.046 Score=49.19 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=83.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhh-----cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKR-----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~ 115 (256)
.+..+|=+|-|.|.++..+... .|...+++++++|.+++.|+.++....- .+.++-.|..+..... .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 4578888888999876554444 6778999999999999999988754322 2355556655554321 2467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHc
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~ 189 (256)
||+++.+-= .++ . ....+ ....-+...++......|.|.|.+++... +.....++...+++.
T Consensus 371 ~dvl~~dvd---s~d-~-------~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v 434 (482)
T KOG2352|consen 371 PDVLMVDVD---SKD-S-------HGMQC-PPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV 434 (482)
T ss_pred CcEEEEECC---CCC-c-------ccCcC-CchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence 999988420 000 0 00001 11122456788889999999999987443 334455666666553
No 310
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.52 E-value=0.021 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
.+....+|+|||+|.+.--+.+. |..-+|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC------CCCccccccccc
Confidence 35678999999999964333322 446788886544
No 311
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.44 E-value=0.12 Score=45.82 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc-hhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD-IASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~f 116 (256)
.++.+||..|||. |..++.+++..+ -.+++++|.+++..+.+++.. +... .....+ +.+...... ...+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 4678999999877 777766666632 226999999999988887642 2211 111121 222222222 2369
Q ss_pred cEEEECCCCCCCC--CcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTP--EDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+..-.-.... -..... + .+.... .....+..+.+.|+++|+++.+..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~---~-~~~~~~----~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQ---A-LLKLET----DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CEEEECCCCcccccccccccc---c-cccccc----CchHHHHHHHHHhccCCEEEEEcC
Confidence 9997742100000 000000 0 000000 013457778889999999998653
No 312
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.40 E-value=0.13 Score=41.85 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC--C---ceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc-----h-h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVP--G---VQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG-----L-E 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~--~---~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~-----~-~ 109 (256)
.-++|+|+|...|.++..+++.|-...+ + ..|+++|+.+=+ .++. --+++|+.+. . .
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence 3589999999999999999988754212 1 249999986532 1111 2334454432 2 2
Q ss_pred hhcCCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 110 KRLAGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..++.|+|+|+-. +.+ +-++.+.+. ..+.+...+.-...+|||||.++--....+....+-..|..
T Consensus 110 hfggekAdlVvcDGA------PDvTGlHd~DEy~-----Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA------PDVTGLHDLDEYV-----QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCC------CCccccccHHHHH-----HHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 334468999999632 111 111111110 01133444555677899999998754444444444444544
No 313
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.34 E-value=0.6 Score=37.74 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh-hchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
.-+.+++++|+.|..+..++.....+..+.++++|-.++......++.+...+... +|+.++.. +.+..+ ..+|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCE
Confidence 56889999777654333333333333567899999999888888888887777643 78888744 444443 57899
Q ss_pred EEEC
Q 025207 119 MVVN 122 (256)
Q Consensus 119 Ii~n 122 (256)
++.+
T Consensus 119 ~vVD 122 (218)
T PF07279_consen 119 VVVD 122 (218)
T ss_pred EEEe
Confidence 9885
No 314
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.32 E-value=0.27 Score=40.88 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=69.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
.-++.|+|.||-.|..++.++..+.... ++-+++++|.=+ ...+..++|+...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4678999999999987766655553321 344677777421 1233444444444
Q ss_pred CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++ +..++.|.+.+.++.....++-++-.+.=+ -......|+.++..|.|||+++
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-----------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-----------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 43 237888998887765444555555443111 1234577888999999999999
Q ss_pred EEEeCCCC---HHHHHHHHHHcCCcEE
Q 025207 171 LVTLTAND---PSQICLQMMEKGYAAR 194 (256)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~g~~~~ 194 (256)
+ ..+.. ...+.+.+.+.|....
T Consensus 210 ~--DDY~~~gcr~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 210 F--DDYGHPGCRKAVDEFRAEHGITDP 234 (248)
T ss_dssp E--SSTTTHHHHHHHHHHHHHTT--S-
T ss_pred E--eCCCChHHHHHHHHHHHHcCCCCc
Confidence 8 33433 2244555566666543
No 315
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.98 E-value=0.35 Score=42.14 Aligned_cols=135 Identities=14% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHh----c--------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALML----G--------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHA---DLI 100 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l----~--------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~ 100 (256)
....+|+|+||.+|..++.+...+ . +..|..+|+--|+-.+-....=+.+..+. ... ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466899999999999888776643 1 12345789999976655544433333221 111 333
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCc--cccccc----ch-hhhcC-CCCc----------HHHHHHHHHHHhhc
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPED--EVGREG----IA-SAWAG-GENG----------RAVIDKILPSADKL 162 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~--~~~~~~----~~-~~~~~-~~~~----------~~~~~~~l~~~~~~ 162 (256)
-+.+...+ +++++.|++++....+..+.. +..... .. ..+.. .... ...+..+|+.=.+-
T Consensus 95 pgSFy~rL--fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 95 PGSFYGRL--FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp ES-TTS----S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 44444332 236899999996555544431 111100 00 01111 0000 12345556655677
Q ss_pred cccCeEEEEEEeCCC
Q 025207 163 LSKRGWLYLVTLTAN 177 (256)
Q Consensus 163 LkpgG~l~~~~~~~~ 177 (256)
|+|||+++++..+..
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 999999999776443
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.93 E-value=0.81 Score=32.85 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|.+. +..++.+|.+++.++.+++. + ..++.+|..+.. ....-.+.|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~----~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE----G--VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT----T--SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc----c--cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 78889999999988763 35899999999998877653 2 378889987653 2222357888887322
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+.....+-...+-+.|...++.... ..+..+.++..|...
T Consensus 72 --------------------~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 72 --------------------DDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp --------------------SHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred --------------------CHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 01122334444556777778776442 244567777777654
No 317
>PTZ00357 methyltransferase; Provisional
Probab=94.76 E-value=0.11 Score=48.86 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=66.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCC---------cceEEEcchhhchhhh--
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNV---------HADLINTDIASGLEKR-- 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~---------~~~~~~~d~~~~~~~~-- 111 (256)
..|+=+|+|-|-+--...+.....+...+|+++|.++.++.....+. ....+ ..+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999865555554443345678999999966554444432 22233 1389999998874321
Q ss_pred -------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc----CeE
Q 025207 112 -------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK----RGW 168 (256)
Q Consensus 112 -------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 168 (256)
.-+++|+||+- +.|.....+.....|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-------------------LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-------------------LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-------------------hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 01368999882 112111222356777777888876 776
No 318
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.26 E-value=0.02 Score=48.21 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+..|+|+-+|-|++++...-..+ ..+|+++|.+|.+++..+++++.|++.. .++.+|-....+ +.+.|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchhe
Confidence 458999999999999984444322 3489999999999999999999987654 666666555432 3677777
Q ss_pred EE
Q 025207 120 VV 121 (256)
Q Consensus 120 i~ 121 (256)
..
T Consensus 267 nL 268 (351)
T KOG1227|consen 267 NL 268 (351)
T ss_pred ee
Confidence 65
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.24 E-value=0.49 Score=40.62 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=58.3
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||..|+| .|..++.+++.. ++++++++.+++..+.+++ .+.+. ++.. +............+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLELAKE----LGADE-VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHH----hCCCE-EEcCCCcCHHHHHHHhcCCCc
Confidence 467788887765 355555555542 4679999999988877654 23321 1111 11111111224579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-. ....++.+.+.|+++|.++...
T Consensus 234 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVG---------------------------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEC
Confidence 99986311 1345777889999999998754
No 320
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.12 E-value=0.39 Score=41.22 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE----cchhhchhhh-c
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN----TDIASGLEKR-L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~----~d~~~~~~~~-~ 112 (256)
+.+.+||=+|+| .|..++..|+.++ ..+|+.+|+++..++.|++ + |.+. .... .++.+..... .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 588999999999 4777777777743 4589999999999999988 3 4332 1111 1122222221 2
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..+|+.+-.- ..+..++.....++.||.++++..
T Consensus 240 ~~~~d~~~dCs---------------------------G~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------------------------GAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ccCCCeEEEcc---------------------------CchHHHHHHHHHhccCCEEEEecc
Confidence 24588887631 145567777889999999777553
No 321
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.98 E-value=1.4 Score=36.80 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhh
Q 025207 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASA 141 (256)
Q Consensus 62 ~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~ 141 (256)
+.|.+.++..+|+|+|.++..++.|.+ .|+..... .+ .+.. ..+|+||..-|
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~~-~~-~~~~-----~~~DlvvlavP----------------- 54 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEAS-TD-IEAV-----EDADLVVLAVP----------------- 54 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEEE-SH-HHHG-----GCCSEEEE-S------------------
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeecc-CC-HhHh-----cCCCEEEEcCC-----------------
Confidence 344444777899999999999887754 24332322 22 2221 35699987555
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc---CCcEEEEEecCCC
Q 025207 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK---GYAARIVVQRSTE 202 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~ 202 (256)
......+++++...+++|.++.=+.. ....+.+.+++. +....-.++-.+.
T Consensus 55 -------~~~~~~~l~~~~~~~~~~~iv~Dv~S---vK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 55 -------VSAIEDVLEEIAPYLKPGAIVTDVGS---VKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp -------HHHHHHHHHHHHCGS-TTSEEEE--S----CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred -------HHHHHHHHHHhhhhcCCCcEEEEeCC---CCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 23467889999999999987775433 234455555544 3355556655444
No 322
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.17 Score=44.33 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+.++.+|+|.+|-.|.-+..++..+. ....++|+|.+.+..+..++.+...|..+ ....+|+.....+..=.....
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~---n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMR---NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhh---ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 36789999999999999988888764 35689999999999999999998888876 666888877522211245678
Q ss_pred EEECCCCC
Q 025207 119 MVVNPPYV 126 (256)
Q Consensus 119 Ii~npP~~ 126 (256)
|+++|+..
T Consensus 288 iL~DpscS 295 (413)
T KOG2360|consen 288 ILVDPSCS 295 (413)
T ss_pred EEeCCCCC
Confidence 88988764
No 323
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.64 E-value=1.2 Score=36.92 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=76.5
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
|..-||+-.++ ..+.+ ++-++.++|+.|.-....++++. .+.+.++..+|....+... +.++=-+|+.+||
T Consensus 93 l~~YpGSP~lA----~~llR--~qDRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP 165 (279)
T COG2961 93 LRYYPGSPLLA----RQLLR--EQDRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP 165 (279)
T ss_pred cccCCCCHHHH----HHHcc--hhceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC
Confidence 88899998863 33332 34589999999999999999886 2334488899977665432 2355789999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCC--CHHHHHHHHHHcCC
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAN--DPSQICLQMMEKGY 191 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~--~~~~~~~~~~~~g~ 191 (256)
|-... .++.+++.+.+.++ ++|+..+..|-.. ....+.+.++..+.
T Consensus 166 fE~~~---------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 166 FELKD---------------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred ccccc---------------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCc
Confidence 94322 25666666666655 5777777666443 22234444444454
No 324
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.57 E-value=0.45 Score=35.08 Aligned_cols=67 Identities=28% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|-|.-.- +|+.|.+. +..|+++|+++. +.. .| .+++.-|+.++....- ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~---vA~~L~~~--G~dV~~tDi~~~-------~a~-~g--~~~v~DDif~P~l~iY-~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPE---VAKKLKER--GFDVIATDINPR-------KAP-EG--VNFVVDDIFNPNLEIY-EGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--H---HHHHHHHH--S-EEEEE-SS-S------------S--TTEE---SSS--HHHH-TTEEEEEE
T ss_pred CCCcEEEECcCCCHH---HHHHHHHc--CCcEEEEECccc-------ccc-cC--cceeeecccCCCHHHh-cCCcEEEE
Confidence 446999999998764 34444432 479999999998 111 22 2688888888654422 46899997
Q ss_pred -CCC
Q 025207 122 -NPP 124 (256)
Q Consensus 122 -npP 124 (256)
+||
T Consensus 77 iRPP 80 (127)
T PF03686_consen 77 IRPP 80 (127)
T ss_dssp ES--
T ss_pred eCCC
Confidence 555
No 325
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.52 E-value=0.85 Score=42.07 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|+=+|||. |..++..++.+ ++.|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 4789999999995 55666666653 4589999999999888776
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.42 E-value=0.97 Score=39.27 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|| |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+. ++ ..++.+... ..+.+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~~~--~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLARE----MGADK-LVNPQNDDLDHYKA--EKGYF 236 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHH----cCCcE-EecCCcccHHHHhc--cCCCC
Confidence 36788888876 45554444443322 44 69999999998887765 24321 11 112222111 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... ....+..+.+.|++||+++++..
T Consensus 237 D~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---------------------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 99876311 12346677789999999998653
No 327
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.30 E-value=1.1 Score=39.77 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCEEEEecccccHHHHHHHHHh----cc-------cCCCceEEEEeCCHHHHHHHHHHHHHc--------------CCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALML----GQ-------EVPGVQYIATDINPYAVEVTRKTLEAH--------------NVH 96 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l----~~-------~~~~~~v~giD~~~~~i~~a~~~~~~~--------------~~~ 96 (256)
...+|+|+|||+|..++.+...+ .+ ..|..+|+--|+-.+-....=+.+... +..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 35799999999998776654432 11 235678888887655544433333210 000
Q ss_pred ceEEE---cchhhchhhhcCCCccEEEECCCCCCCCCcccccccc------h-hhhcCCCC----------cHHHHHHHH
Q 025207 97 ADLIN---TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI------A-SAWAGGEN----------GRAVIDKIL 156 (256)
Q Consensus 97 ~~~~~---~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~------~-~~~~~~~~----------~~~~~~~~l 156 (256)
.-+.. +.+..- -++.++.+++.+..-.+..+.......+. . ..+..... ....+..+|
T Consensus 143 ~~f~~gvpGSFY~R--LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL 220 (386)
T PLN02668 143 SYFAAGVPGSFYRR--LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL 220 (386)
T ss_pred ceEEEecCcccccc--ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 01111 222221 13457899998865544443311100000 0 00000000 011344556
Q ss_pred HHHhhccccCeEEEEEEeCC
Q 025207 157 PSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 157 ~~~~~~LkpgG~l~~~~~~~ 176 (256)
+.=.+-|+|||+++++..+.
T Consensus 221 ~~Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 221 RARAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHHHhccCcEEEEEEecC
Confidence 66677799999999977443
No 328
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.25 E-value=0.13 Score=43.30 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=46.9
Q ss_pred eeeccCCccccCCc----hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025207 10 LVSSHPEVYEPCDD----SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 10 ~~~~~~~~~~p~~~----~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
-.++.|++|.=..- +..+++.+.+.+..--...+++|||+|||+|...+.+... ....+...|.+.+.++
T Consensus 80 ~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-----~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 80 HSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-----GAVSVHFQDFNAEVLR 153 (282)
T ss_pred ccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-----ccceeeeEecchhhee
Confidence 34556666553322 6777777765541111357899999999999988777665 1257888898888873
No 329
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.16 E-value=2.6 Score=37.43 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=65.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcce-EEEcchhhchhhhcCCCccEEEECC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHAD-LINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+=++=.-|.++..++.. .+ . ...| +--.-...+.|+.+|+++.+ +...+..+.+ ++.+|+|+.-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~----~~--~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~----~~~~d~vl~~~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH----KP--Y-SIGD-SYISELATRENLRLNGIDESSVKFLDSTADY----PQQPGVVLIKV 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhC----CC--C-eeeh-HHHHHHHHHHHHHHcCCCcccceeecccccc----cCCCCEEEEEe
Confidence 7899999999998887743 23 1 1123 23334566889999988653 4444443332 35699999855
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
| +....++..+..+...|.+|+.++......
T Consensus 115 P----------------------K~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 115 P----------------------KTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred C----------------------CCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 5 234457788899999999999987644433
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.06 E-value=0.97 Score=39.79 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. .....+..+.......+.+|
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCC
Confidence 46778888876 4455444444332 245 69999999998887754 34321 11112222222222234689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+-.-. ....+....+.|+++|+++++.
T Consensus 262 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAG---------------------------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEc
Confidence 9986311 1245666778899999998754
No 331
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.92 E-value=1.4 Score=38.29 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=+||| .+++.+.+.+.....+.+|+++|.+++.++.++. .+. ... .+ +. .. ...+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~-~~--~~-~~--~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYL-ID--DI-PE--DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eee-hh--hh-hh--ccCCcEEE
Confidence 568899998864 4554443333221234589999999988887754 121 111 11 11 11 12489887
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. +. .....+....++|++||+++++..
T Consensus 228 D~~G--------------------~~----~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--------------------GR----GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--------------------CC----ccHHHHHHHHHhCcCCcEEEEEee
Confidence 6311 10 013457778889999999988653
No 332
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.80 E-value=0.73 Score=39.16 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=50.0
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
....|..-...+.+.++... ..++..|||+-+|+|..++++.+. +-.++|+|++++.++.+.+++...
T Consensus 200 ~~~hp~~~P~~l~~r~i~~~----s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 200 KKLHPAQKPLALIERLIRDY----SFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ccCCCCCChHHHHHHHHHhc----CCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 33444444455555555543 368999999999999988766554 347999999999999999988754
No 333
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=3.5 Score=32.34 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc-cCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQ-EVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD 117 (256)
+.+.+|-=+.|-+=.+ -+.... ..|.-+|+.+|.+... ...|. +|+.=|...+. +....+.||
T Consensus 72 ~e~~rIacvS~Psly~----y~k~re~~~~~~~v~lfEfDkRF--------e~yg~--eFvfYDyN~p~dlp~~lk~~fd 137 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYV----YQKKREIEIPHDQVYLFEFDKRF--------ELYGT--EFVFYDYNCPLDLPDELKAHFD 137 (217)
T ss_pred ccCceEEEEeCchHHh----hhhhhhccCCceeEEEEEehhhH--------Hhccc--eeEEeccCCCCCCHHHHHhccc
Confidence 4566776666655331 222111 1356789999987543 23331 45555554442 333457899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++|||.... -+.+--..+..+++++-.+++++
T Consensus 138 iivaDPPfL~~e---------------------Cl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 138 IIVADPPFLSEE---------------------CLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred EEEeCCccccch---------------------hhhhhHHHHHHHhcCCceEEEec
Confidence 999999996321 23344555677778888888744
No 334
>COG4889 Predicted helicase [General function prediction only]
Probab=92.45 E-value=0.7 Score=44.94 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=81.1
Q ss_pred CccccCCchHHHHHHHHHhhcccc--------cCCCCEEEEecccccHHHHHHHHHh------cccCCCceEEEEeCCHH
Q 025207 16 EVYEPCDDSFALVDALLADRINLV--------EHHPVLCMEVGCGSGYVITSLALML------GQEVPGVQYIATDINPY 81 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~--------~~~~~~VLDlGcG~G~~~~~la~~l------~~~~~~~~v~giD~~~~ 81 (256)
=+|+| ...+|+|+..-..+. ...+.+|||+.+|||.+-..+...+ .+++.+ .+++.||---
T Consensus 815 IVyTP----iEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~-eLhA~eIvLL 889 (1518)
T COG4889 815 IVYTP----IEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQK-ELHAFEIVLL 889 (1518)
T ss_pred eeecc----hhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHh-hhhHHHHHHH
Confidence 36788 455565554433321 2467899999999999854444321 222332 5777777666
Q ss_pred HHHHHHHHHHHc-----C-Ccc--eEEEcchhhchh-----------------hhcCCCccEEEECCCCCCCCCcccc--
Q 025207 82 AVEVTRKTLEAH-----N-VHA--DLINTDIASGLE-----------------KRLAGLVDVMVVNPPYVPTPEDEVG-- 134 (256)
Q Consensus 82 ~i~~a~~~~~~~-----~-~~~--~~~~~d~~~~~~-----------------~~~~~~fD~Ii~npP~~~~~~~~~~-- 134 (256)
++-.|.-|+... | .++ .+...|-++... ....-.+-+|+.||||..-...+..
T Consensus 890 sYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn 969 (1518)
T COG4889 890 SYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNN 969 (1518)
T ss_pred HHHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccc
Confidence 655555555432 1 111 233333322221 0112347889999999765443321
Q ss_pred ----cccchh----hhcC-----CCC-cHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 135 ----REGIAS----AWAG-----GEN-GRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 135 ----~~~~~~----~~~~-----~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++..+. .+.. ..+ -.+.+-+.++-....++.+|++-|+..+
T Consensus 970 ~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 970 QNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred cccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecC
Confidence 111111 1111 111 1123334445566789999999998753
No 335
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.44 E-value=0.55 Score=39.91 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=64.3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc--hhhhcC---CCCcHHH-HHHHHHHHhhccccCeEEEE
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI--ASAWAG---GENGRAV-IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~--~~~~~~---~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++|..+.+....+.++|+++.+|||...-......... ...+.. ...-.+. ....+..+.++|+++|.+++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v 97 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGSLYV 97 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCCEEEE
Confidence 78889988877766667999999999998765411110000 000000 0000112 45667888999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEE--EEEecC
Q 025207 172 VTLTANDPSQICLQMMEKGYAAR--IVVQRS 200 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 200 (256)
... ......+...+++.||... .++.+.
T Consensus 98 ~~~-~~~~~~~~~~~~~~gf~~~~~iiw~k~ 127 (302)
T COG0863 98 IDP-FSNLARIEDIAKKLGFEILGKIIWKKP 127 (302)
T ss_pred ECC-chhhhHHHHHHHhCCCeEeeeEEEeCC
Confidence 654 4556677888888888753 344443
No 336
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.37 E-value=0.82 Score=36.27 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCC---------cceEE-EcchhhchhhhcCCCccE
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNV---------HADLI-NTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~---------~~~~~-~~d~~~~~~~~~~~~fD~ 118 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++...+-. .+.++ ..++. ..|..... ...|+
T Consensus 7 GlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-----~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-----KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-----HH-SE
T ss_pred CCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-----hccce
Confidence 6777777777777644 579999999999887664311 00010 01222 22333321 24688
Q ss_pred EEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHcC
Q 025207 119 MVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~g 190 (256)
++... |+.. .+......+...++.+.+.|+++-.+++-+- .......+..++++.+
T Consensus 80 ~~I~VpTP~~~----------------~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDE----------------DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBET----------------TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccc----------------cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 87643 3322 1112244578889999999999777666221 1222234566676654
No 337
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=0.039 Score=42.08 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.7
Q ss_pred HHHHHHHhhccccCeEEEEEEeCCC
Q 025207 153 DKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 153 ~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..+++.|++.|||||++-+..|...
T Consensus 66 ~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 66 TSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred HHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4678999999999999998776543
No 338
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.85 E-value=3.6 Score=35.49 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025207 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+.+||=.|+ |.|..++.+++.+ ++ +|++++.+++..+.+++. .|.+ .++. .++.+.........+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~~~~~~~---lGa~-~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKCQLLKSE---LGFD-AAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHHh---cCCc-EEEECCCCCHHHHHHHHCCCCc
Confidence 378888775 4566666666652 45 799999888877766553 2433 2222 223232222223469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.... ...+..+.+.|+++|+++.+.
T Consensus 226 d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVG----------------------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCC----------------------------cHHHHHHHHHhccCCEEEEEe
Confidence 99986311 122466788999999998754
No 339
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.81 E-value=1.3 Score=38.77 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++.+ ++++++++.+++..+.+++. .|.+ .++.. ++.+.......+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCC
Confidence 57789988887 3566666666652 56899999988877766532 2432 22221 232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++-.- + ...+..+.+.|+++|+++++.
T Consensus 228 gvD~v~d~v------------------------G----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNV------------------------G----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECC------------------------C----HHHHHHHHHHhccCCEEEEEC
Confidence 689997631 1 134677788999999998754
No 340
>PRK08643 acetoin reductase; Validated
Probab=91.60 E-value=5.9 Score=32.51 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
++++|=.| |+|.++..+++.+.++ +++|+.++.+++..+.+...+...+....++..|+.+... .. .-+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVED--GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35666666 5566777888877654 5689999988877766666655444344667777765421 11 125
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|.++.|..+.
T Consensus 79 ~id~vi~~ag~~ 90 (256)
T PRK08643 79 DLNVVVNNAGVA 90 (256)
T ss_pred CCCEEEECCCCC
Confidence 689999987553
No 341
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.51 E-value=4 Score=35.17 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+... +++ |++++.+++..+.+++ .|.+ .++...- .+...... ...+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGAD-FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC-EEEcCCcchHHHHHHHhCCCCC
Confidence 46788888875 55665555544432 456 9999999888777654 2332 2221110 11111211 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... -...+....+.|+++|+++++..
T Consensus 233 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG---------------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99986321 12345666788999999987653
No 342
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.38 E-value=5.8 Score=32.23 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
..+++|=.| |+|.++..+++.+.++ +.+|++++.++...+...+.+...+....++.+|+.+... ... -
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456788888 4777888888887654 5689999998876665555554333334677788765421 110 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|+++.+.-+.
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 4689999887543
No 343
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.34 E-value=2.7 Score=34.48 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=57.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+||-.|+|+ |...+.+++. -+.++++++.+++..+.+++. +... .....+..........+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~-----~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA-----AGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4778999999886 4444444443 246899999998877766442 2211 11111111111011235699
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++.+-. ....+..+.+.|+++|+++....
T Consensus 204 ~vi~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVG---------------------------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCC---------------------------CHHHHHHHHHhcccCCEEEEEcc
Confidence 9987422 11346667788999999987654
No 344
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.31 E-value=1.8 Score=35.94 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=61.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-.|+-.++. ..+ .++-+.+.+|+.+.-.+..++++... -...++..|..+.+... ...+=-+|+++||
T Consensus 62 l~~YPGSP~ia~---~ll---R~qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAIAA---RLL---REQDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHHHH---HHS----TTSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE---
T ss_pred cCcCCCCHHHHH---HhC---CccceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCC
Confidence 556666666532 222 23558999999999999998887642 23489999988765432 2355689999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCc
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYA 192 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~ 192 (256)
|-...+ +..+...+...+| +.|++++..|-... ...+.+.+++.+..
T Consensus 135 YE~~~d---------------------y~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~ 185 (245)
T PF04378_consen 135 YEQKDD---------------------YQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK 185 (245)
T ss_dssp --STTH---------------------HHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred CCCchH---------------------HHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence 943221 4555555555555 57877776764432 23444555555543
No 345
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.04 E-value=7.3 Score=31.98 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ ++.++.++-++...+.+...+...+....++..|+.+... . . .-
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468899999 4566677777776644 5689889988777766655554433334566777665421 0 0 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+..+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 568999998754
No 346
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.95 E-value=6.2 Score=31.91 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=67.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ +++|++++-+++..+.+.+.+...+ ...++..|+.+... .. .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKE--GAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788888875 66677777777643 6689999998877665544443322 23566777664321 00 01
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+|.++.+..-......... ......+... ......+++.+.+.++++|.++++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~-~~~~~~~~~n---~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEF-SGLEEMLTNH---IKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHH-HHHHHHHHHh---chHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457988887643221110000 0000001000 00122345566667778888777553
No 347
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.84 E-value=3 Score=36.42 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcC-CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~-~~ 115 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++ ..+..+....... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FGAT-HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcCCCcCHHHHHHHHhCCCC
Confidence 46788998876 4455444443332 245 59999999998887754 3332 222 1222222222212 35
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-.-- -...+....+.+++||+++++..
T Consensus 246 ~d~vid~~g---------------------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVG---------------------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEECC
Confidence 898876210 12345667778999999988643
No 348
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.80 E-value=5.9 Score=33.62 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=70.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|+=+| .|.++-.+++.+.+++....+++.|.+....+.+.. .++..+......... ....|+|+..-
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~~~~~~~~~~-----~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDELTVAGLAEA-----AAEADLVIVAV 72 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccccccchhhhh-----cccCCEEEEec
Confidence 3455555 667777788888777777788999999888776653 222212111111111 24589998866
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|. .....+++++...|++|-.+.= ..+....+.+.+.++.-.
T Consensus 73 Pi------------------------~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PI------------------------EATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred cH------------------------HHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHhccC
Confidence 53 2367888888888899877663 234456777777776533
No 349
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.79 E-value=0.55 Score=39.00 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
.++++|.+.++. .+..+++|+.||+|.+++.+.. +...++.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~---~~~~~~vepF~G~g~V~~~~~~------~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPK---NKHKTYVEPFAGGGSVFLNLKQ------PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCEEEEEecchhHHHHHhcc------cccceeeeechHHHHHHHH
Confidence 456777777642 1789999999999998655443 2458999999998876665
No 350
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.75 E-value=6.7 Score=32.95 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|+++ +.++.++++.+.+. +++|+.++.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467888888863 56777788877654 568888888754333333332332322 456667665421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 81 ~g~iDilVnnAG~~ 94 (274)
T PRK08415 81 LGKIDFIVHSVAFA 94 (274)
T ss_pred cCCCCEEEECCccC
Confidence 26799999987654
No 351
>PLN02494 adenosylhomocysteinase
Probab=90.73 E-value=5 Score=36.67 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+++|+=+|+| .++..+++.+. .-+++|+++|.++.....+.. .+. .+ .++.+.. ...|+|++
T Consensus 253 aGKtVvViGyG--~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G~--~v--v~leEal-----~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EGY--QV--LTLEDVV-----SEADIFVT 315 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cCC--ee--ccHHHHH-----hhCCEEEE
Confidence 67899999888 45555666654 236789999999865433322 122 12 1332322 35799988
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...- ..-+.......+|+||+++.+..
T Consensus 316 tTGt--------------------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTGN--------------------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCCC--------------------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 4220 11223667778999999998654
No 352
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.71 E-value=3.2 Score=34.94 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEE-cchhhchhhh-cCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLIN-TDIASGLEKR-LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~-~d~~~~~~~~-~~~~fD 117 (256)
.++.+||=.|+ |.++..+++.+... ++. |+++|.+++..+.+++ .+.+. ++. .+..+..... ....+|
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~-~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATA-LAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcE-ecCchhhHHHHHHHhCCCCCC
Confidence 46788888876 45555555443322 444 8999999888777655 23321 111 1111111111 123589
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++-.-. ....+..+.+.|+++|+++++.
T Consensus 190 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSG---------------------------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEec
Confidence 9876311 1345677788999999999865
No 353
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.50 E-value=1.2 Score=39.33 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcc---eEEE-cchhhchhhhcCCCccEEEEC-C
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHA---DLIN-TDIASGLEKRLAGLVDVMVVN-P 123 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~---~~~~-~d~~~~~~~~~~~~fD~Ii~n-p 123 (256)
|-|++++.+|.+..++ |..|+|+||++..++....--. +..+.. ..+. +.+........-...|+++.. |
T Consensus 16 GLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VP 93 (436)
T COG0677 16 GLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVP 93 (436)
T ss_pred ccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEec
Confidence 5677777777776643 5689999999999887543110 000000 0111 111111111111356776543 3
Q ss_pred -CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHH-cCCc
Q 025207 124 -PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMME-KGYA 192 (256)
Q Consensus 124 -P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~-~g~~ 192 (256)
|+.. +++++ +....+..+.+.+.|++|-.+++-+- +....+.+.-.++. -|+.
T Consensus 94 TPl~~-------~~~pD---------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~ 150 (436)
T COG0677 94 TPLKK-------YREPD---------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK 150 (436)
T ss_pred CCcCC-------CCCCC---------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc
Confidence 3322 12222 34578889999999999998888432 23333334444444 3444
No 354
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.35 E-value=5.7 Score=36.32 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+=+|+|. ++..+++.+.. .+++|+.+|.++.....+.. .|. . ..++.+.. ...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a--~Ga~ViV~e~dp~~a~~A~~----~G~--~--~~~leell-----~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRG--FGARVVVTEIDPICALQAAM----EGY--Q--VVTLEDVV-----ETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHH--CCCEEEEEeCCchhHHHHHh----cCc--e--eccHHHHH-----hcCCEEE
Confidence 3789999999885 66667777653 46789999998775433322 232 1 22333322 3689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+... ...++ ......+|||++++-+... ..+.....+...+
T Consensus 315 ~atG---------------------------t~~iI~~e~~~~MKpGAiLINvGr~--d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATG---------------------------NKDIITLEHMRRMKNNAIVGNIGHF--DNEIQVAELEAYP 356 (476)
T ss_pred ECCC---------------------------cccccCHHHHhccCCCcEEEEcCCC--chHHhHHHHHhcC
Confidence 8521 12234 3567789999999985443 2233334455443
No 355
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.16 E-value=6.3 Score=32.61 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.| |+|.++..+++.+.++ +++|+.++.+++..+...+.+ +....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 457788777 4556777788877654 568999998876554433322 3233567777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+++.|..+.
T Consensus 79 g~id~lv~~ag~~ 91 (261)
T PRK08265 79 GRVDILVNLACTY 91 (261)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987543
No 356
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.16 E-value=2.1 Score=36.64 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+||=+||| .+++.+.+.+.. . ++ .|.++|.+++.++.+... . ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G--~vG~~a~q~ak~-~-G~~~v~~~~~~~~rl~~a~~~----~----~i--~~~~~----~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHG--TLGRLLARLTKA-A-GGSPPAVWETNPRRRDGATGY----E----VL--DPEKD----PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCC--HHHHHHHHHHHH-c-CCceEEEeCCCHHHHHhhhhc----c----cc--Chhhc----cCCCCCEEE
Confidence 46678877764 444444443332 2 34 477889888777665431 1 11 11110 124689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. -...+..+.+.|+++|+++++..
T Consensus 206 d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG---------------------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC---------------------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 7421 13456777889999999998653
No 357
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.12 E-value=1.1 Score=40.42 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025207 26 ALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 26 ~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
..+-.+..++.. .+...+..++|+|.|.|.-.-.+... -+ ...-.++.||-+..|.+....+... +-.+ .++..
T Consensus 183 a~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~l-wr-~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~ 259 (491)
T KOG2539|consen 183 ALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLL-WR-QTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRK 259 (491)
T ss_pred HHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhh-cc-cccceeEeeccchHHHHHHHHhhcC-hhhcCchhccc
Confidence 333444444443 23456788999998877643333332 11 1124699999999999988877653 1111 11111
Q ss_pred -chhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025207 103 -DIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 103 -d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
.+.....+. ....||+|++..-..+..+. ..-......-+.+...+||.++++..+....-
T Consensus 260 ~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~-----------------~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 260 LVFHRQRLPIDIKNGYDLVICAHKLHELGSK-----------------FSRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred cchhcccCCCCcccceeeEEeeeeeeccCCc-----------------hhhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 122222222 23459999996443332221 11122334446677899999999888766554
Q ss_pred HHH
Q 025207 181 QIC 183 (256)
Q Consensus 181 ~~~ 183 (256)
+..
T Consensus 323 e~l 325 (491)
T KOG2539|consen 323 ELL 325 (491)
T ss_pred hhH
Confidence 433
No 358
>PRK06128 oxidoreductase; Provisional
Probab=89.90 E-value=3.8 Score=34.82 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.+++||=.| |+|.++..+++.+.++ +++|+.+..+.+ ..+...+.+...+....++..|+.+... ..
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 457888888 4666677788877654 557777665432 2333333333334444667777765321 11
Q ss_pred cCCCccEEEECCCCCCCCC--cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPE--DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+.+|++|.|.-+..... .+....+....+... ..-...+++.+.+.++++|.++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN---VYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 1247899999875432111 010000111111000 0012244566677778888887754
No 359
>PLN02740 Alcohol dehydrogenase-like
Probab=89.79 E-value=1.9 Score=38.11 Aligned_cols=97 Identities=22% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.++..+++.+... ++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGIT-DFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhCC
Confidence 57788998876 55555555544332 45 69999999998887754 3432 22221 122222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- -...+......+++| |+++++.
T Consensus 268 g~dvvid~~G---------------------------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAG---------------------------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 6999976311 124566677788886 9987754
No 360
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.72 E-value=3.6 Score=35.84 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC---CHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI---NPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~---~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+| .++..+.+.+.. .++++++++. ++...+.+++ .|... .....+..+ . . ....+
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~-~-~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAE-V-K-LVGEF 239 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhh-h-h-hcCCC
Confidence 467889888864 444444444332 2458999986 5666666543 33321 000111111 1 1 12468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. ....+....+.|++||+++++..
T Consensus 240 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG---------------------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC---------------------------CHHHHHHHHHHccCCcEEEEEec
Confidence 98877321 12356778889999999987553
No 361
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=89.70 E-value=2 Score=35.16 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=65.6
Q ss_pred ccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh---------hhcCCCccE
Q 025207 50 GCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE---------KRLAGLVDV 118 (256)
Q Consensus 50 GcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~~fD~ 118 (256)
|+| ++.++..+++.+.++ +++|+.++.+++..+...+.+.. .+ .+++..|+.+... ....+++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 455 456677778877654 67999999999976444444433 33 3468888754321 111278999
Q ss_pred EEECCCCCCCC----C-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTP----E-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.|..+.... + .+....+-...+.. .......+.+.+.++++++|.++++..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDI---NVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 99876544331 1 01000000101100 011233445666778999999888653
No 362
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.59 E-value=4.6 Score=34.45 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=57.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
.++.+||=.|. |.|..++.+++.+ ++++++++.+++..+.+++ .|.+ .++. .++.+.........
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-----G~~vi~~~~s~~~~~~l~~----~Ga~-~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-----GCKVIGCAGSDDKVAWLKE----LGFD-AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHCCCC
Confidence 46778877763 4555666666652 5689999988887777654 3432 2222 22222222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.- -...+....+.|+++|+++.+.
T Consensus 212 vd~vld~~----------------------------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDNV----------------------------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEECC----------------------------CHHHHHHHHHhhccCCEEEEEc
Confidence 89887521 0234677788999999998753
No 363
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.59 E-value=8.3 Score=31.61 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+...+.+...+....++..|+.+... .. .-
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56888888865 45567777777654 5689999998887777666665444333566777654321 10 11
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|....
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999987554
No 364
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.51 E-value=0.94 Score=34.49 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=28.1
Q ss_pred Eeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH--HHHcC
Q 025207 48 EVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT--LEAHN 94 (256)
Q Consensus 48 DlGcG~G--~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~--~~~~~ 94 (256)
|+|+..| .....+... ...++..++++|.+|..++..+++ +..+.
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 544433211 125678999999999999999999 66653
No 365
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.47 E-value=5.6 Score=34.05 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|. |.|..++.+++. .++++++++.+++..+.+++ .|.+ .++.. +..+.......+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~-----~G~~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHhCCC
Confidence 46788887774 355555555554 25689999988887777643 3442 22221 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+....+.|+++|+++.+.
T Consensus 207 gvdvv~d~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG----------------------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC----------------------------HHHHHHHHHHhCcCcEEEEec
Confidence 6899976311 123567788999999999754
No 366
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.86 E-value=3.9 Score=29.66 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..++|+|+|-|-=.- +++.|.++ ++.++++|+++.. +. ...++...|+.++.... =...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~---VA~~L~e~--g~dv~atDI~~~~---a~-------~g~~~v~DDitnP~~~i-Y~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLD---VAKRLAER--GFDVLATDINEKT---AP-------EGLRFVVDDITNPNISI-YEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHH---HHHHHHHc--CCcEEEEeccccc---Cc-------ccceEEEccCCCccHHH-hhCccceee
Confidence 346999999886543 56666654 4789999999881 11 12378888988875432 145799987
Q ss_pred C
Q 025207 122 N 122 (256)
Q Consensus 122 n 122 (256)
-
T Consensus 77 i 77 (129)
T COG1255 77 I 77 (129)
T ss_pred c
Confidence 3
No 367
>PLN02827 Alcohol dehydrogenase-like
Probab=88.86 E-value=2.7 Score=37.17 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+ .++.. +..........+
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT----FGVT-DFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-EEEcccccchHHHHHHHHHhCC
Confidence 46889998875 45555555443322 34 58899998887777644 3432 22211 222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- ....+..+.+.|++| |+++++.
T Consensus 263 g~d~vid~~G---------------------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVG---------------------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 6899976311 123466677789998 9998754
No 368
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.76 E-value=5.9 Score=35.43 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++.+|+=+|+ | .|..++.+++.++ ....+|+++|.+++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G--~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGP--IGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcc--cCCceEEEEcCCHHHHHHHHHh
Confidence 46778887763 3 5555555555421 0113799999999999988774
No 369
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=3.7 Score=34.11 Aligned_cols=143 Identities=17% Similarity=0.061 Sum_probs=80.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH------HHHHHHH---HcCCcceEEEcchhhchh--h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE------VTRKTLE---AHNVHADLINTDIASGLE--K 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~------~a~~~~~---~~~~~~~~~~~d~~~~~~--~ 110 (256)
...+||.+|=|.=.++..++..+++.- ..++++.++..-.+ -++.|+. .+|.. -++..|+..... .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa--~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~-I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSA--GNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT-ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccc--cceeeeeccchhhhhhhcccchHHHHHHHHHcCCc-eEecccceeEEeccc
Confidence 457899999999998888888876432 35666555544422 2344443 33432 233334443322 3
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeC-CCCH-HHHHHHHH
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLT-ANDP-SQICLQMM 187 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~-~~~~-~~~~~~~~ 187 (256)
+.-++||-||.|.|+.-..-. ++.+.-.+. ........+++.+..+|+ ..|.+++.... .... -.+..+.+
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~----~e~d~~~i~--~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak 206 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK----FEQDRNIIP--LHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAK 206 (282)
T ss_pred ccccccceEEEcCCCCCCCcc----cccchHHHH--HHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhh
Confidence 334789999999887432211 111110000 123456788999999999 77998885432 2222 23444445
Q ss_pred HcCCcE
Q 025207 188 EKGYAA 193 (256)
Q Consensus 188 ~~g~~~ 193 (256)
+.|+..
T Consensus 207 ~~gl~L 212 (282)
T KOG4174|consen 207 EFGLTL 212 (282)
T ss_pred hccccc
Confidence 555543
No 370
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.58 E-value=12 Score=30.46 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|+ +|.++..+++.+.+. +.+|++++-+. ...+.....+...+....++..|+.+... ...
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4578888885 455677777776543 56888877653 23333333333333333567777665421 111
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|+++.|......... .....+.. .......+++.+.+.++.+|+++++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~-----~~~~~~~v---n~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGM-----DEDYAMRL---NRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCC-----CcceeeEe---eeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1468999987643221110 00000000 01123455666777666677766654
No 371
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.41 E-value=7.2 Score=33.00 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
++++||=.|+ +|.++..+++.+.++ +++|+.++.++ ...+.....+...+....++..|+.+... ...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888885 566677777777654 56888888764 23333334444334344667777654321 111
Q ss_pred CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.+......... +....+....+.. .......+++.+.+.++++|.++++.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~---N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKT---NIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987654322110 0000000001100 01113344556666677778877755
No 372
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.41 E-value=4.2 Score=35.12 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++. .|.+ .++. .+..+........
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~-----~G~~Vi~~~~~~~~~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKL-----KGCYVVGSAGSDEKVDLLKNK---LGFD-DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHHh---cCCc-eeEEcCCcccHHHHHHHhCCC
Confidence 57788988875 345555555554 256899999888877776652 2332 2222 1232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+..+.+.|+++|+++.+.
T Consensus 221 gvd~v~d~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVG----------------------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCC----------------------------HHHHHHHHHHhccCcEEEEec
Confidence 6899876310 134667788999999998754
No 373
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.41 E-value=12 Score=30.86 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++.+. +.++...+.+. +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 468899999874 77888888888754 56888776542 33333322211 2223566677654421 11
Q ss_pred --cCCCccEEEECCCCC
Q 025207 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 126799999887553
No 374
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.30 E-value=12 Score=30.99 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.+. +++|+.++.++...+.+++.....+ ...++..|+.+... .. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHHH
Confidence 578899999887 47888888887654 5688888887654333333222222 12355666554321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 26799999987543
No 375
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=88.23 E-value=4.7 Score=28.16 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
++|| +.||+|.-+-. +++..++.++.+|++.++...+..+.... ...+|+|+.-|
T Consensus 4 ~~IL-l~C~~G~sSS~----------------------l~~k~~~~~~~~gi~~~v~a~~~~~~~~~--~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL----------------------LVNKMNKAAEEYGVPVKIAAGSYGAAGEK--LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHH----------------------HHHHHHHHHHHCCCcEEEEEecHHHHHhh--cCCCCEEEECc
Confidence 5666 78999964322 22344555566788777777777665322 24689999976
Q ss_pred C
Q 025207 124 P 124 (256)
Q Consensus 124 P 124 (256)
.
T Consensus 59 q 59 (95)
T TIGR00853 59 Q 59 (95)
T ss_pred h
Confidence 5
No 376
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.22 E-value=0.23 Score=35.62 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhccccCeEEEEE
Q 025207 151 VIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
-+..++..+...|+|||++++-
T Consensus 22 Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 22 GLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEe
Confidence 3778999999999999999993
No 377
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.19 E-value=9.3 Score=32.43 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=29.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+|.=+|+| .++..++..+... +..|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG--~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSG--VMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECcc--HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 356666665 4554455555432 5689999999999987766544
No 378
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.17 E-value=1.2 Score=38.31 Aligned_cols=99 Identities=21% Similarity=0.182 Sum_probs=60.4
Q ss_pred CCCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--E-EcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--I-NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGc-G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~-~~d~~~~~~~~~~~~f 116 (256)
.++++|-=+|. |-|.+++.+++.+ +.+|+++|-+...-+.+-+ ..|.+.-+ . ..|..+......++-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 36777766664 4789999999985 4689999988755554443 34444311 1 2333333333233444
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|-+..- ....++.+..+||++|.++++.-+.
T Consensus 252 ~~v~~~-----------------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-----------------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-----------------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 544420 1344677788999999999976443
No 379
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.08 E-value=15 Score=31.48 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~-- 111 (256)
.+++++=.|++ |.++.++++.|.++ +++|+.+.-+++..+.+.+.+.... ....++..|+.+... ..
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56788877765 55677778777654 5789999988877666665554332 233677778765421 11
Q ss_pred cCCCccEEEECCCCC
Q 025207 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+++|++|.|.-..
T Consensus 90 ~~~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EGRPIHLLINNAGVM 104 (313)
T ss_pred hCCCccEEEECCccc
Confidence 125689999987543
No 380
>PLN02253 xanthoxin dehydrogenase
Probab=88.07 E-value=9.3 Score=31.87 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.| |+|.++.++++.+.++ +++|+.++.++...+...+.+. .+....++..|+.+... ... -
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~--G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKH--GAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 467888888 5667788888877654 6789999988766554443332 12223677777765421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.+|.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 578999987643
No 381
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.97 E-value=12 Score=31.29 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEEEcchhhchhh-hcC---
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLINTDIASGLEK-RLA--- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~~~d~~~~~~~-~~~--- 113 (256)
....|+.+|||-=.-. ..+.. .++..++=+|. |+.++.-++.+...+. ...++..|+.+.... ...
T Consensus 81 g~~qvV~LGaGlDTr~----~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 81 GIRQVVILGAGLDTRA----YRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred CCcEEEEeCCccccHH----HhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 3568999999988743 23321 12455666663 6677776777766542 126777777532211 111
Q ss_pred --CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 114 --GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 --~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...-++++--.+...+. .....++..+.+...||+.+++-..
T Consensus 155 d~~~ptl~i~EGvl~YL~~-------------------~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTE-------------------EAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCeeeeecchhhcCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEec
Confidence 22334444332222221 2367788888888779999988543
No 382
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.96 E-value=16 Score=31.75 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567777774 556677777777644 5689999999888777766666555455677777655421 10 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 579999987654
No 383
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.96 E-value=1.6 Score=38.48 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+-+.|+|+|.|-|.++.-++.. -+..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~-----y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG-----YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc-----cCceEEEeccchHHHHHHHH
Confidence 5589999999999976555443 36799999999877776654
No 384
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.88 E-value=13 Score=30.15 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hh---cCCCcc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KR---LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~---~~~~fD 117 (256)
++|+=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+ ....++..|+.+... .. ....+|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4677777 5677788888887754 5689999998876655544443322 233677778765421 11 123579
Q ss_pred EEEECCCC
Q 025207 118 VMVVNPPY 125 (256)
Q Consensus 118 ~Ii~npP~ 125 (256)
.++.+..+
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987654
No 385
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.83 E-value=9.9 Score=35.63 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=45.0
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
||.|.++..+++.+.++ +..++.+|.+++.++.+++. ...++.+|..+.. .+..-++.|.+++
T Consensus 423 ~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 67777888888888654 45799999999988877642 2378899987753 2222357887765
No 386
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.81 E-value=19 Score=32.57 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+++|+=+|+|. ++..++..+.. -+++|+.+|.++.....+.. .|. ++ .++.+.. ..+|+|+.
T Consensus 211 ~Gk~VlViG~G~--IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~----~G~--~v--~~l~eal-----~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGD--VGKGCAQRLRG--LGARVIVTEVDPICALQAAM----DGF--RV--MTMEEAA-----ELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHh--CCCEEEEEcCCchhhHHHHh----cCC--Ee--cCHHHHH-----hCCCEEEE
Confidence 688999999874 55556665553 36689999999876443322 132 22 1222221 36899987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 174 (256)
... ...++. .....+|+|++++.+..
T Consensus 274 aTG---------------------------~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 274 ATG---------------------------NKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCC---------------------------CHHHHHHHHHhcCCCCCEEEEcCC
Confidence 321 123454 56778999999988654
No 387
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.78 E-value=12 Score=29.46 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc--------eE-EEcchhhch
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA--------DL-INTDIASGL 108 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~--------~~-~~~d~~~~~ 108 (256)
|.=+|+ |..+..++..+.. .+..|+.+|.+++.++.+++.+... .+.. .+ ...|+.+.
T Consensus 2 V~ViGa--G~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~- 76 (180)
T PF02737_consen 2 VAVIGA--GTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA- 76 (180)
T ss_dssp EEEES---SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG-
T ss_pred EEEEcC--CHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH-
Confidence 334555 5555555555443 3679999999999999888876641 1110 11 22333222
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
...|+|+-..| .....-..++.++.+++.|+-++...+.+.. ..++...+
T Consensus 77 -----~~adlViEai~----------------------E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~-i~~la~~~-- 126 (180)
T PF02737_consen 77 -----VDADLVIEAIP----------------------EDLELKQELFAELDEICPPDTILASNTSSLS-ISELAAAL-- 126 (180)
T ss_dssp -----CTESEEEE-S-----------------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS--HHHHHTTS--
T ss_pred -----hhhheehhhcc----------------------ccHHHHHHHHHHHHHHhCCCceEEecCCCCC-HHHHHhcc--
Confidence 36799987543 2345567899999999999998887554333 33333332
Q ss_pred cCCcEEEEEecC-CCCccEEEEEEEecCc
Q 025207 189 KGYAARIVVQRS-TEEENLHIIKFWRDFD 216 (256)
Q Consensus 189 ~g~~~~~~~~~~-~~~~~~~l~~~~~~~~ 216 (256)
....+.+--.. .+....-+++......
T Consensus 127 -~~p~R~ig~Hf~~P~~~~~lVEvv~~~~ 154 (180)
T PF02737_consen 127 -SRPERFIGMHFFNPPHLMPLVEVVPGPK 154 (180)
T ss_dssp -STGGGEEEEEE-SSTTT--EEEEEE-TT
T ss_pred -CcCceEEEEecccccccCceEEEeCCCC
Confidence 22222222222 2233355666655444
No 388
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.73 E-value=11 Score=31.91 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=55.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eEE-Ecchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DLI-NTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~~-~~d~~~ 106 (256)
.+|.=+|+| .++..++..+.. .+..|+..|.+++.++.+.+.+..+ +. .. .+. ..+..
T Consensus 5 ~kI~vIGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 79 (292)
T PRK07530 5 KKVGVIGAG--QMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE- 79 (292)
T ss_pred CEEEEECCc--HHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-
Confidence 456666665 444445555443 3568999999999988766544322 21 10 111 12221
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. -...|+|+..-| ........+++.+...++++.+++..+
T Consensus 80 ---~--~~~aD~Vieavp----------------------e~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 80 ---D--LADCDLVIEAAT----------------------EDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ---H--hcCCCEEEEcCc----------------------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1 146799987543 112234567778888889988766433
No 389
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.72 E-value=3.4 Score=35.92 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+||=.|+ |.++..+.+.+.. .+++++++|.+++..+.+++
T Consensus 165 ~~g~~VlV~G~--G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGA--GGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH
Confidence 56889999998 4444444443332 24589999999998887754
No 390
>PRK07985 oxidoreductase; Provisional
Probab=87.71 E-value=6 Score=33.58 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+ .+..+...+.+...+....++..|+.+... ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578998885 566777788877754 5678877643 333444444444434334566777765321 10
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+.+|.++.|..+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 12568999987654
No 391
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.65 E-value=4.9 Score=31.12 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH-HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT-RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+++++=+|+..-.+-..+.+ ...+.|..+|.++--++.- +.++. .+...|+...... ..++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-----~GA~~iltveyn~L~i~~~~~dr~s------si~p~df~~~~~~-y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-----HGAAKILTVEYNKLEIQEEFRDRLS------SILPVDFAKNWQK-YAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHH-----cCCceEEEEeecccccCcccccccc------cccHHHHHHHHHH-hhccchhhhe
Confidence 56777788776654333222 2345799999876443311 11111 3333444433322 2477999877
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---------HHHHHHHHHcCCc
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---------SQICLQMMEKGYA 192 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~g~~ 192 (256)
-...-+..=. .+-++.. +.| -...+..+..+||+||.+++..|-.... ..++-.+.-.||+
T Consensus 70 ~~siEh~GLG--RYGDPid-----p~G---dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 70 FSSIEHFGLG--RYGDPID-----PIG---DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred echhcccccc--ccCCCCC-----ccc---cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 3222110000 0000000 011 2355777889999999999987744321 2334444456777
Q ss_pred EEEEEec
Q 025207 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+...+..
T Consensus 140 ~i~tfs~ 146 (177)
T PF03269_consen 140 WIDTFSG 146 (177)
T ss_pred EEeeecc
Confidence 7665543
No 392
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.58 E-value=7.8 Score=33.46 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=54.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=.|+| .++..+.+.... .++++++++.+++..+.+++ .|.+ .++.. .+. ..+.+|+++
T Consensus 164 ~~g~~VlV~G~g--~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~Ga~-~vi~~--~~~----~~~~~d~~i 228 (329)
T TIGR02822 164 PPGGRLGLYGFG--GSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LGAA-SAGGA--YDT----PPEPLDAAI 228 (329)
T ss_pred CCCCEEEEEcCC--HHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hCCc-eeccc--ccc----CcccceEEE
Confidence 578899988864 333333333222 25689999999888777665 3432 12211 111 123578765
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..-. ....+....+.|++||+++++..
T Consensus 229 ~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP---------------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC---------------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 4211 12357777889999999988653
No 393
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=87.56 E-value=3.5 Score=32.30 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEeCCCCHHHH-HHHHHHcCCcE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTLTANDPSQI-CLQMMEKGYAA 193 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~g~~~ 193 (256)
||+|+++||+........+. ....+.... .+.+.. .+.+++.++|.+++-..+ ....+. .+.|..-||+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~~---~~~~Y~tm~----~~~i~~Lpv~~l~~~~~~lflWvTn-~~~~~~~~~l~~~WGf~~ 72 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGG---AEAHYPTMS----LDEIKSLPVPQLAAPGALLFLWVTN-SQLPEAKLELFPAWGFEY 72 (176)
T ss_pred CCEEEEeCCCCCcCcccccc---cccCCCccC----HHHHHhCCHHHhCCCCcEEEEEecc-chhhHHHHHHHHhCCCEE
Confidence 79999999998766543320 111111111 222222 256778888888885543 334455 88899989875
Q ss_pred E
Q 025207 194 R 194 (256)
Q Consensus 194 ~ 194 (256)
.
T Consensus 73 ~ 73 (176)
T PF05063_consen 73 V 73 (176)
T ss_pred E
Confidence 3
No 394
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.41 E-value=7.6 Score=36.78 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.+.+. +..++.+|.|++.++.+++. + ..++.+|..+.. ....-++.|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~----g--~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY----G--YKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC----C--CeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 67788888888887643 55899999999999887642 2 378889987652 22223578888873
No 395
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.28 E-value=7.5 Score=33.47 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=54.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCC
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~ 114 (256)
.++.+||-.|+| .|..++.+++.+ + ..+++++.++...+.+++. +.. .++ ..++.+..... ...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~-----g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLL-----GAARIIAVDSNPERLDLAKEA----GAT-DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCcchHHHHHHHHcCCC
Confidence 467788887654 345555555542 3 2788888888777665542 321 222 12222222221 125
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++..-. -...+....+.|+++|+++...
T Consensus 236 ~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG---------------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6999876311 1135677788999999988653
No 396
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.89 E-value=13 Score=30.76 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++.| .++.++++.+.++ +++|+..+.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKH--GAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888888764 4677777776643 568888887643323333332222221 345567654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 26799999987553
No 397
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.77 E-value=7.1 Score=35.15 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++++|+=+|+|. ++..+++.+. ..+++|+.+|.++...+.|+. .|. ... +..+.. ..+|+|+
T Consensus 200 l~GktVvViG~G~--IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~--~~~--~~~e~v-----~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGD--VGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY--EVM--TMEEAV-----KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC--EEc--cHHHHH-----cCCCEEE
Confidence 4789999999985 3333444443 235689999999988776654 233 121 222211 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH-HhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS-ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~ 174 (256)
.... ...++.. ..+.+++||+++.+..
T Consensus 263 ~atG---------------------------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG---------------------------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 7421 1234544 4789999999988654
No 398
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.75 E-value=9 Score=32.89 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++.+ +. .+++++.++...+.+++. +.+ .++..+ +... .. ....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~-~vi~~~~~~~~~~-~~-~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD-ETVNLARDPLAAY-AA-DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC-EEEcCCchhhhhh-hc-cCCCc
Confidence 678888887654 44544444442 44 689999888877755442 322 222111 1111 11 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.... ....+....+.|+++|+++.+.
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASG---------------------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987311 1234677788999999998754
No 399
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.74 E-value=8.6 Score=33.39 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCC-C
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAG-L 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~-~ 115 (256)
+++.+||=.|. |.|.+++.+++.+ ++.++++-.+++-.+.+++ .|.+. +....|+.+...+...+ .
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~-----G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL-----GATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 56889998884 4556777777764 2356666666655554443 34332 34445565555444333 6
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+|+..- =...+......|+++|+++.+....
T Consensus 212 vDvv~D~v----------------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVLDTV----------------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEEECC----------------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 99998731 1345666788899999999866533
No 400
>PRK09072 short chain dehydrogenase; Provisional
Probab=86.71 E-value=15 Score=30.26 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~-----~~ 114 (256)
+++++|=.|++ |.++..+++.+.++ +++|++++.+++..+.....+ ..+....++..|+.+... ... .+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35677777755 55666777776644 568999999887776655544 222233677777765421 100 25
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
.+|.++.+..+.
T Consensus 80 ~id~lv~~ag~~ 91 (263)
T PRK09072 80 GINVLINNAGVN 91 (263)
T ss_pred CCCEEEECCCCC
Confidence 689999986543
No 401
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.55 E-value=17 Score=29.93 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++-+....+.+++. .+....++..|+.+... .. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYTYQNDRMKKSLQKL---VDEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEecCchHHHHHHHhh---ccCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888888875 67788888888754 66888887764433222221 11123566777754321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999987654
No 402
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.52 E-value=8.4 Score=32.65 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=60.8
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcc-------------eE-EEcchhhc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHA-------------DL-INTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~-------------~~-~~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+.+|.+++.++.+.+.+... +... .+ ...+..+.
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 3544555 55665666665533 568999999999998877653321 1100 01 11122111
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-...|+|+..-|- .......++.++.+.++++.++...+.+ -...++.+.+
T Consensus 79 -----~~~aD~Vi~avpe----------------------~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~~~ 129 (288)
T PRK09260 79 -----VADADLVIEAVPE----------------------KLELKKAVFETADAHAPAECYIATNTST-MSPTEIASFT 129 (288)
T ss_pred -----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhc
Confidence 1457999875441 1233456677788888887766554333 2344444443
No 403
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.48 E-value=13 Score=30.61 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=49.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---cCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---LAG 114 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~~~ 114 (256)
+++|=.|++ |.++..+++.+.++ +++|++++.+++.++.....+. +....++..|+.+... .. ..+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456777754 66777788877654 5689999988887666544332 2233677777765321 11 035
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|+++.+.-..
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 789999887543
No 404
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=86.37 E-value=4.9 Score=35.31 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+| .++..+.+.+.. -++ +|+++|.+++..+.+++ .|.+..+.. .++.+.......+.
T Consensus 184 ~~g~~VlV~G~G--~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 184 EEGDTVAVFGLG--GIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 567888888864 444443333221 244 79999999998887754 243221111 11222222222236
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
+|+++-... -...+..+.+.++++ |+++++..
T Consensus 256 ~d~vid~~G---------------------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 256 VDYSFECIG---------------------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 898876311 124466677788886 99887653
No 405
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.36 E-value=14 Score=30.98 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh-cCCCc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-LAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-~~~~f 116 (256)
+.+|=-|+ |.++.++++.+. + +++|+.+|.++...+.+.+.+...+....++..|+.+... .. ..+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 34554564 468888998884 2 6799999998877666555554444344566777654321 11 12579
Q ss_pred cEEEECCCCC
Q 025207 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|+++.|.-+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999987643
No 406
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=86.28 E-value=6.4 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 86 TRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 86 a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.++.++.+|++.++...+..+.........+|+|++.|
T Consensus 21 ~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 21 TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 34455567777677777766543221234689999954
No 407
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=86.26 E-value=14 Score=30.29 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|+ +|.++.++++.+.++ +++|+.++.+.. +...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~--G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKA--GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 5688998885 456677778877653 668888876532 22333333334334567777655421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-..
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987554
No 408
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.15 E-value=7.7 Score=34.93 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=62.0
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----------hcCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------RLAG 114 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------~~~~ 114 (256)
+|.=+| .|.++..++..+.+. +.+|+++|.+++.++..+.. .. .+...++.+.... ...+
T Consensus 5 kI~VIG--lG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~--~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 5 TISVIG--LGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EI--HIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred EEEEEC--cchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CC--CcCCCCHHHHHHHHhhcCceeeecccc
Confidence 454455 455555566666543 46899999999988753211 11 1111111110000 0012
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-CCCCHHHHHHHHHHc
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-TANDPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~ 189 (256)
..|+|+...|-....+ +..........++.+.+.|++|-+++..+- ......++...+.+.
T Consensus 75 ~aDvvii~vptp~~~~--------------~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 75 PADAFLIAVPTPFKGD--------------HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred cCCEEEEEcCCCCCCC--------------CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5788886544211000 111233456677888888988877665332 334455666666554
No 409
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.03 E-value=8.7 Score=29.53 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|..+..+++.|.+. +..|++.|.+++..+...+. + -....+..+.. ...|+|++.-|-
T Consensus 8 GlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~----g---~~~~~s~~e~~-----~~~dvvi~~v~~------ 67 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA----G---AEVADSPAEAA-----EQADVVILCVPD------ 67 (163)
T ss_dssp --SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT----T---EEEESSHHHHH-----HHBSEEEE-SSS------
T ss_pred chHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh----h---hhhhhhhhhHh-----hcccceEeeccc------
Confidence 4567777788877643 56899999999877765542 2 12223333432 245999885441
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCeEEEEEEe-CCCCHHHHHHHHHHcCCc
Q 025207 132 EVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRGWLYLVTL-TANDPSQICLQMMEKGYA 192 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~g~~ 192 (256)
-.....++.. +...|++|.+++-.+. ......++.+.+.+.|..
T Consensus 68 -----------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 68 -----------------DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp -----------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred -----------------chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 1224566666 7777877777665221 111233556666666644
No 410
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.74 E-value=13 Score=32.47 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.+++.+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FGAT-DCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-EEEcccccchHHHHHHHHHhCC
Confidence 56788888875 4555555554432 245 69999999998877654 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 256 g~d~vid~~g---------------------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 256 GVDYTFECIG---------------------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCcEEEECCC---------------------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 6899976310 123566677889887 99887643
No 411
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=85.73 E-value=18 Score=29.49 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=50.5
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cCCCc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~~~f 116 (256)
++|=.| |+|.++..+++.+.++ ++.|+.++-++...+...+.+...+....++..|+.+... . . ..+..
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKD--GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456666 4677777788877654 5689999988776665555554444444677777654321 1 0 12468
Q ss_pred cEEEECCCCC
Q 025207 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|.++.+....
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 9999987654
No 412
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.64 E-value=15 Score=30.65 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=48.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.+ ++.++.++++.+.++ +++|+.+.-++...+.+++.....+. ...+..|+.+... .. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~--G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAA--GAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHHHHh
Confidence 45778888886 477888888887754 56888776554333333333222221 2356667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+..|+++.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 25799999987554
No 413
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.53 E-value=12 Score=32.47 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+... ++. |++++.+++..+.+++ .|.. .++.. +............+
T Consensus 159 ~~g~~vlV~G~--g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGA--GTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS----LGAM-QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-eEecCcccCHHHHHHHhcCCCC
Confidence 46788888876 44554444443322 444 7899999988777643 2332 12211 11111111112357
Q ss_pred c-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 D-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| +|+-.-. -...+....+.|++||+++++.
T Consensus 230 d~~v~d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAG---------------------------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 5543210 1345777888999999999864
No 414
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.47 E-value=19 Score=30.08 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++. +.++.++++.+.+. +++|+.++.++...+..++.....+.. .++..|+.+... .. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~g~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFTYQGEALGKRVKPLAESLGSD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEecCchHHHHHHHHHHHhcCCc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889899876 36777788887654 568888887654333333332222321 355667654421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 83 ~g~iD~lVnnAG~~ 96 (271)
T PRK06505 83 WGKLDFVVHAIGFS 96 (271)
T ss_pred hCCCCEEEECCccC
Confidence 26899999987543
No 415
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.14 E-value=16 Score=30.08 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCH--HHHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINP--YAVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~--~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++++|=.|+| ++.++.++++.+.++ +++|+.++.+. +..+...+.+ +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999986 677888888887754 56888887653 3333332222 2223566677654421 10
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 126799999987553
No 416
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.03 E-value=12 Score=32.40 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcC-CCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~-~~f 116 (256)
.++.+||=.|+ |.++..+++.+... ++ .|++++.+++..+.+++ .+.+. .....++.+.+..... ..+
T Consensus 171 ~~g~~vlI~g~--g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGA--GPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 46777877764 45555555544432 45 79999988888777644 24321 1112233222222222 349
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++-.-. ....+..+.+.|+++|+++.+..
T Consensus 243 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG---------------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 99987421 12346777888999999887543
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.98 E-value=11 Score=32.28 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+....|+++|.+++..+.+++ .+.... ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~~-~~~~~~~~-----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGDR-VTTSAAEA-----VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCce-ecCCHHHH-----hcCCCEEEECC
Confidence 567777755 4444455555443322479999999987766543 232111 11222121 13579998865
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|-. ....+++.+...++++..++.
T Consensus 75 p~~------------------------~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVG------------------------ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHH------------------------HHHHHHHHHHhhCCCCCEEEe
Confidence 421 134556667677888876543
No 418
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.87 E-value=11 Score=32.42 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .+.+++++..+++..+.+++ .+.+ .++ ..++.+.+... ....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~-----~g~~v~~~~~s~~~~~~~~~----~g~~-~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA-----RGARVIVVDIDDERLEFARE----LGAD-DTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEECCCHHHHHHHHH----hCCC-EEecCcccCHHHHHHHHhCCCC
Confidence 4678888887652 4454444444 25689999888887776643 2322 222 12222222222 2345
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-- -...+..+.+.|+++|.++.+.
T Consensus 228 vd~vld~~g---------------------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG---------------------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899987310 1244677788999999988754
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.68 E-value=25 Score=30.48 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCcc-----eEE-Ecchhhchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVHA-----DLI-NTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~~-----~~~-~~d~~~~~~~ 110 (256)
++|-=||+| .++..++..+. ..+..|+..|.+++..+.++..+.. .+... .+. ..++.+.
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a--- 80 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC--- 80 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH---
Confidence 567777665 33333444433 2377999999999988776665432 12110 111 1122111
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
-...|+|+-+-| ...+.-..++.++.+.++|+-++..++. .-...++...+.
T Consensus 81 --v~~aDlViEavp----------------------E~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--- 132 (321)
T PRK07066 81 --VADADFIQESAP----------------------EREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARAT--- 132 (321)
T ss_pred --hcCCCEEEECCc----------------------CCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhcC---
Confidence 146799988654 1244567788899999999885554333 222344444332
Q ss_pred CcEEEEEecCC-CCccEEEEEEEecCcc
Q 025207 191 YAARIVVQRST-EEENLHIIKFWRDFDI 217 (256)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 217 (256)
-....+-.... +...+-+++.......
T Consensus 133 ~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 133 HPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred CcccEEEEecCCccccCceEEEeCCCCC
Confidence 22223333333 2333456677665543
No 420
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.59 E-value=20 Score=30.36 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++.+++.++...+.+.. +.....+..|+.+... .. .-
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHAR--GAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678887775 455677777777643 57899999988876655444321 1122333466654321 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987553
No 421
>PRK06196 oxidoreductase; Provisional
Probab=84.52 E-value=18 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++-+++..+.+...+. ...++..|+.+... .. ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~--G~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQA--GAHVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 5678888885 566788888877654 5689999988776655444332 13566777665421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987654
No 422
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.48 E-value=13 Score=34.14 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=64.8
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCcc---e-----E-EEcchhhchhhhcC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVHA---D-----L-INTDIASGLEKRLA 113 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~~---~-----~-~~~d~~~~~~~~~~ 113 (256)
|.=+ |.|.+++.++..+.+.+.+.+|+++|++++.++..++.... .++.. + + ...|..+. -
T Consensus 4 I~Vi--G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~-----i 76 (473)
T PLN02353 4 ICCI--GAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH-----V 76 (473)
T ss_pred EEEE--CCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH-----H
Confidence 4445 55566666666666555567899999999998876543210 11100 0 0 11111111 1
Q ss_pred CCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHH
Q 025207 114 GLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMME 188 (256)
Q Consensus 114 ~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~ 188 (256)
...|+++..- |........ . ....+.......+.+.+.|++|-.+++.+ ......+.+...+.+
T Consensus 77 ~~advi~I~V~TP~~~~g~~~--~---------~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGA--G---------KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcC--C---------CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 3468776532 432110000 0 01123457788899999998876655532 123334566666665
No 423
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.29 E-value=10 Score=30.99 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=51.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
++||=.|+ +|.++..+++.+.+. +++|++++-++...+.........+....++..|+.+... ......+|+++.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777776 556677777777643 5789999888776655555544444445677788765421 122357999999
Q ss_pred CCCC
Q 025207 122 NPPY 125 (256)
Q Consensus 122 npP~ 125 (256)
|.-+
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7644
No 424
>PRK09242 tropinone reductase; Provisional
Probab=84.23 E-value=21 Score=29.17 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|++ |.++..+++.+.++ +++|+.++.+++..+...+.+... +....++..|+.+... ..
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGL--GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56788888874 45566677776644 568999998887776666655443 2233566777654321 10
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+++|.++.+.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12578999987754
No 425
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.19 E-value=17 Score=30.82 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc---------eE-EEcchh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA---------DL-INTDIA 105 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~---------~~-~~~d~~ 105 (256)
.+|.=+|+| .++..++..+.+ .+..|+.+|.+++.++.+++++... .+.. .+ ...|..
T Consensus 4 ~kIaViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAG--VLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred cEEEEECCC--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 356666665 444445555543 2568999999999988887664321 1100 11 122322
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. -...|+|+..-|- ..+....+++++...++++-++..
T Consensus 80 ~a-----~~~aDlVieavpe----------------------~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 EA-----VKDADLVIEAVPE----------------------DPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HH-----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 21 1457999886552 123356777888888877765544
No 426
>PRK12743 oxidoreductase; Provisional
Probab=84.14 E-value=22 Score=29.18 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++||=.|+ +|.++..+++.+.++ +++|+.+. .+....+.+.+.+...+....++..|+.+... .. .-
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQ--GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357888885 566788888887654 56787764 45555555555555555445677777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.++.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987554
No 427
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.11 E-value=12 Score=30.45 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=52.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.|+ +|.++..+++.+.++ +++|+.++.++...+.+.+.+...+....++..|+.+... .. .-
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQK--GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678888885 566677777776654 5689999999877666665555444444667777654311 11 01
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 81 ~~id~vi~~ag~ 92 (253)
T PRK08217 81 GQLNGLINNAGI 92 (253)
T ss_pred CCCCEEEECCCc
Confidence 568999998754
No 428
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.97 E-value=21 Score=28.93 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.| |+|.++..+++.+.++ +.+|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 457788777 6677888888887654 5689999988776655554443322223566777765421 00 01
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+-.+.
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 4689999987654
No 429
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.96 E-value=2.9 Score=35.53 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=69.6
Q ss_pred Cccc-cccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC
Q 025207 1 MSLR-TAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN 79 (256)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~ 79 (256)
||+| .++++--.++.+.=+|+.+....-. ... . ...-.+++||=.|+ +|.++..+++.+.++ +++|++++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~k~vlItGa-sggIG~~la~~La~~--G~~Vi~~~R~ 73 (293)
T PRK05866 1 MSKRPLRRLTDQLTLAGMRPPISPQLLINR--PPR-Q-PVDLTGKRILLTGA-SSGIGEAAAEQFARR--GATVVAVARR 73 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCCCchhhcCC--CCC-C-CcCCCCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 5666 5666655666666666654332211 000 0 00124577887786 456677777777643 6789999999
Q ss_pred HHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCccEEEECCCC
Q 025207 80 PYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLVDVMVVNPPY 125 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~fD~Ii~npP~ 125 (256)
++..+...+.+...+....++..|+.+... .. .-+.+|+++.|.-.
T Consensus 74 ~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 74 EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 887766665554434334667777665321 11 12478999987643
No 430
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.96 E-value=7.1 Score=34.76 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=51.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+||=+|| |.++..++..|.+.+- .+|+..|-+.+..+.+...... ..+....|+.+.. .... ..+|+||.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 56888999 7777778888776543 6999999998887776655321 3467777776652 1222 34599987
Q ss_pred CCCCC
Q 025207 122 NPPYV 126 (256)
Q Consensus 122 npP~~ 126 (256)
-.|++
T Consensus 75 ~~p~~ 79 (389)
T COG1748 75 AAPPF 79 (389)
T ss_pred eCCch
Confidence 55443
No 431
>PRK06197 short chain dehydrogenase; Provisional
Probab=83.93 E-value=25 Score=29.77 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=52.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh-
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~- 111 (256)
..+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+... +....++..|+.+... ..
T Consensus 14 ~~~k~vlItGa-s~gIG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAVVTGA-NTGLGYETAAALAAK--GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46678887774 566777788877654 568888888877666555544432 2233677778765421 11
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+.+|++|.|....
T Consensus 91 ~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 91 AAYPRIDLLINNAGVM 106 (306)
T ss_pred hhCCCCCEEEECCccc
Confidence 124689999987543
No 432
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.86 E-value=13 Score=30.03 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++-++.......+.+...+....++.+|+.+... ... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAAD--GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577886664 677788888877654 5689999988776665555554444344677778765421 111 1
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+.+|.|+.+.....
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999875543
No 433
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.78 E-value=13 Score=32.03 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch---hhchhhh-
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DI---ASGLEKR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~---~~~~~~~- 111 (256)
.++.+||=.|+|. |..++.+++. .++. +++++.+++..+.+++. +.+ .++.. +. .+.....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~-----~G~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKA-----FGATKVVVTDIDPSRLEFAKEL----GAT-HTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHc----CCc-EEeccccccchhHHHHHHHHh
Confidence 4677887776543 3444444443 2445 89998888877666441 322 12211 11 1111111
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....+....+.|+++|+++.+.
T Consensus 231 ~~~~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTG---------------------------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2245999986311 1235677788999999988754
No 434
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.59 E-value=12 Score=32.02 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~f 116 (256)
.++.+||-.|+| .|..++.+++. .+++ +++++.+++..+.+++ .+.. .++..+-.+.. .......+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~-----~G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKL-----NGASRVTVAEPNEEKLELAKK----LGAT-ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHH----hCCe-EEecCCCCCHHHHHHhcCCCC
Confidence 467889888754 23444444443 2445 8899989887776643 2332 22221111100 11123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..-+ ....+....+.|+++|+++.+..
T Consensus 228 d~v~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 228 DVVIEATG---------------------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred cEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 99987421 12456677888999999987543
No 435
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.59 E-value=11 Score=30.66 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc--------hhhh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~- 111 (256)
++++||=.| |+|.++..+++.+.+. +++|++++.++...+...+.+...+. ...++..|+... ....
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 678888888 5777888888887654 56999999998777666555544332 224555555311 0111
Q ss_pred -cCCCccEEEECCCC
Q 025207 112 -LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -~~~~fD~Ii~npP~ 125 (256)
.-+++|.|+.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 12578999987643
No 436
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.58 E-value=2 Score=32.35 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
.|.|.++..++..|.+ .+..|+.+.-.+ .++..+ ..++.. ..+...............+|+|+..-.
T Consensus 4 ~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp ESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred ECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 3666677777877765 456899999777 555432 233321 111111000000112468999988421
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+ .....+..+.+.+.++..+++...+....+.+.+.+
T Consensus 77 a~------------------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY------------------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp GG------------------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cc------------------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 10 156788889999999988888766665455555554
No 437
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.51 E-value=11 Score=31.88 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=59.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cC-Ccc--------eEE-Ecchhhc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HN-VHA--------DLI-NTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~-~~~--------~~~-~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+... +.+|+++|.+++.++.+++.+.. .+ +.. .+. ..|...
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 3444554 55555566655433 45899999999998766543322 22 110 111 122211
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-+..|+|+..-| ........++..+.+.++++.++...+.+ -....+.+.+
T Consensus 80 -----~~~aDlVi~av~----------------------e~~~~k~~~~~~l~~~~~~~~il~s~ts~-~~~~~la~~~ 130 (282)
T PRK05808 80 -----LKDADLVIEAAT----------------------ENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAAT 130 (282)
T ss_pred -----hccCCeeeeccc----------------------ccHHHHHHHHHHHHhhCCCCcEEEECCCC-CCHHHHHHhh
Confidence 145799887432 11223457888888889998877543332 2233444444
No 438
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.46 E-value=12 Score=30.96 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+||=.|+|. |..++.+++.+ ++. +++++.+++..+.+++. +....+....- .. .....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~---~~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-----GAREVVGVDPDAARRELAEAL----GPADPVAADTA-DE---IGGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEECCCHHHHHHHHHc----CCCccccccch-hh---hcCCCCCE
Confidence 4678888887653 44444444442 345 99999998887765542 21111111100 00 01246899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..-. ....+....+.|+++|+++.+..
T Consensus 163 vl~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 163 VIEASG---------------------------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred EEEccC---------------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence 886311 12356777888999999987653
No 439
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.33 E-value=16 Score=31.64 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+ |.++..+++..... ++ .++++|.+++..+.+++ .|.+ .++. .+......... ...
T Consensus 165 ~~g~~vlI~g~--g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 165 KLGDTVAVFGI--GPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCC
Confidence 46788888875 44554444443322 34 69999999887776654 3332 2221 12222222221 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-. -...+..+.+.|+++|+++.+.
T Consensus 236 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGG---------------------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 899986311 1245777888899999988754
No 440
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=83.22 E-value=26 Score=29.41 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHhhcc--cccCCCCEEEEecccccH---HH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE
Q 025207 27 LVDALLADRIN--LVEHHPVLCMEVGCGSGY---VI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI 100 (256)
Q Consensus 27 l~~~l~~~~~~--~~~~~~~~VLDlGcG~G~---~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~ 100 (256)
-+..+-+++.. +--..+.+||-+|.|+-- .+ .-+.+++. .++.++-.|+.+-.-+ ....+
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP---~~ailvDnDi~d~vSD-----------a~~~~ 109 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLP---EDAILVDNDIRDYVSD-----------ADQSI 109 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS----TT-EEEEEESS--B-S-----------SSEEE
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCC---CCcEEEecchhhhccc-----------cCCce
Confidence 34456666643 112467899999988532 22 22344431 2567777787654321 12678
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCC-C-cHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE-N-GRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
.+|......+ .+||+|+++.= ..... ..+++ . ...+...+..-+.+.|+-||.+++-.--...
T Consensus 110 ~~Dc~t~~~~---~k~DlIiSDmY-d~~~k-----------~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 110 VGDCRTYMPP---DKFDLIISDMY-DGRTK-----------NCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp ES-GGGEEES---S-EEEEEE-----TTS------------SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred eccccccCCC---CcccEEEEecc-ccccc-----------ccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 8898877554 79999999731 10000 00010 0 0113556677788899999999985543444
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 179 PSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
..++-+++....+-....-..-......+++..-.
T Consensus 175 ~~~Lyel~~~F~~wt~FcT~VNtSSSEaFLigiNY 209 (299)
T PF06460_consen 175 NAQLYELMGYFSWWTCFCTAVNTSSSEAFLIGINY 209 (299)
T ss_dssp -HHHHHHHTTEEEEEEEEEGGGTTSS-EEEEEEEE
T ss_pred cHHHHHHHhhcccEEEEecccCccccceeEEeeec
Confidence 46666666655443333333333333344444433
No 441
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=83.07 E-value=16 Score=30.12 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=47.0
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++.+|=.|++ ++.++.++++.+.++ +++|+.++.+.+ ..+...+.+...+-...++..|+.+... ..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 46788889985 678888899887754 567776654322 1111111122111122455666644321 11
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 83 ~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 83 QKWGKLDILVHCLAFA 98 (258)
T ss_pred HHcCCCCEEEEccccc
Confidence 126799999988654
No 442
>PRK08324 short chain dehydrogenase; Validated
Probab=82.89 E-value=17 Score=35.00 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+++|.++...+.+.+.+... ....++..|+.+... .. .-
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578887775 456677777777654 568999999988776655544321 123566667654321 00 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+.-..
T Consensus 497 g~iDvvI~~AG~~ 509 (681)
T PRK08324 497 GGVDIVVSNAGIA 509 (681)
T ss_pred CCCCEEEECCCCC
Confidence 4789999876543
No 443
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=82.86 E-value=12 Score=30.49 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
++||=.| |+|.++..+++.+.++ +.+|++++-++...+.....+...+....++.+|+.+... .. ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAA--GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3566666 6677788888877654 5689999998877666665554444344677777765420 11 1245
Q ss_pred ccEEEECCCC
Q 025207 116 VDVMVVNPPY 125 (256)
Q Consensus 116 fD~Ii~npP~ 125 (256)
.|.|+.+.-.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987644
No 444
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.60 E-value=7.7 Score=31.81 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA--GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 568899888 5778888888887654 5689999999887776666665544444666777765321 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
No 445
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.58 E-value=6.9 Score=34.11 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=58.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 115 (256)
+++.+|.=.||| -|...+.-++. .....|+++|+++...+.|++- |... +++. |+.+.....-++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~----agA~~IiAvD~~~~Kl~~A~~f----GAT~-~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKA----AGAGRIIAVDINPEKLELAKKF----GATH-FVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHH----cCCceEEEEeCCHHHHHHHHhc----CCce-eecchhhhhHHHHHHHhcCCC
Confidence 456666666665 34444444444 2235899999999999988764 3321 2211 4444444443446
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.|..+-.- + ....+++....+.++|..+++-..
T Consensus 255 ~d~~~e~~------------------------G---~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAFECV------------------------G---NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEEEcc------------------------C---CHHHHHHHHHHHhcCCeEEEEecC
Confidence 66665410 0 123566777777789998886643
No 446
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.46 E-value=6.9 Score=34.67 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCc-
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVH- 96 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~- 96 (256)
+...+.+.....++..++.+...|+|.|.|.....++...+. ..-+|+++.+..-+.+..+... .|-.
T Consensus 175 E~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~----k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC----KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred hhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc----ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 334444444444455679999999999999876666655332 2466777766655555443322 2332
Q ss_pred --ceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 97 --ADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 97 --~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.+++++.+.... ......++|+.|=.-+ .+. +..=+.++..-+++|-+++-..
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F----------dp~------------L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAF----------DPE------------LKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccC----------CHH------------HHHhhHHHHhhCCCcceEeccc
Confidence 26777776654321 1235678888862111 111 1111336677788998888643
No 447
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.32 E-value=9.1 Score=33.53 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.+++.+.+.+.. .++ +|+++|.+++..+.+++ .|.. .++.. ++.+.......+
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FGVT-EFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcccccchhHHHHHHHHhCC
Confidence 57788888875 5666555554432 244 79999999988887654 3432 12211 121222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-... ....+....+.+++| |+++++..
T Consensus 257 ~~d~vid~~G---------------------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 257 GVDYSFECTG---------------------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 6898876311 123456667788996 99887543
No 448
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=82.31 E-value=9 Score=32.96 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .+.. +++++-+++..+.+++ .+.. .++..+- ...+.... ...
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~-----~G~~~v~~~~~~~~~~~~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKI-----LGAKRVIAVDIDDEKLAVARE----LGAD-DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCCHHHHHHHHH----cCCC-EEecCccccHHHHHHHhCCCC
Confidence 4677888887543 4444444443 2455 9999888877665532 2332 2221110 11111111 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.... -...+..+.+.|+++|+++.+.
T Consensus 228 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG---------------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 999986411 1245677788999999988754
No 449
>PRK06057 short chain dehydrogenase; Provisional
Probab=82.30 E-value=18 Score=29.56 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|++++.++...+...+.+. ..++..|+.+... .. ..
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAE--GATVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56889988874 56677788877654 5789999988776554433321 1455566544321 00 11
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.++.+..+.
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 4689999887543
No 450
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=82.29 E-value=25 Score=29.87 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=60.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCC-cc--------eE-EEcchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~-~~--------~~-~~~d~~~ 106 (256)
++|-=+|+ |.++..++..+.. .+..|+++|.+++.++.+++.+.. .+. .. .. ...+. +
T Consensus 5 ~~V~vIG~--G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 5 KKVGVVGA--GQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CEEEEECC--CHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 44555555 5555556666543 356899999999998876655431 111 00 01 11121 1
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
. -...|+|+..-| ...+....++.++...++++.+++..+.+. ...++.+.+
T Consensus 80 ---~--~~~aD~Vieav~----------------------e~~~~k~~v~~~l~~~~~~~~il~s~tS~i-~~~~l~~~~ 131 (295)
T PLN02545 80 ---E--LRDADFIIEAIV----------------------ESEDLKKKLFSELDRICKPSAILASNTSSI-SITRLASAT 131 (295)
T ss_pred ---H--hCCCCEEEEcCc----------------------cCHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhhc
Confidence 1 145699987433 112345677788888888887665433333 344444444
No 451
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.25 E-value=24 Score=28.88 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.|. +|.++..+++.+.++ ++.++.++.++...+. .+.+...+....++..|+.+... ... -
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~--G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEE--GAIPVIFGRSAPDDEF-AEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHc--CCcEEEEcCChhhHHH-HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4567777775 566788888877654 5678888877766533 33333334444677777754321 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 478999998754
No 452
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=82.02 E-value=3.7 Score=31.61 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=39.6
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..||.||...| +......-.|..+...|++||.++++........-+.+.+..++
T Consensus 68 ~~~D~vvly~P----------------------KaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 68 QDFDTVVLYWP----------------------KAKAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp TT-SEEEEE------------------------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred cCCCEEEEEcc----------------------CcHHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 57999999655 22344667789999999999999999887777778888887764
No 453
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.92 E-value=26 Score=28.38 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--h------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--R------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~------~~ 113 (256)
++++||=.|+ +|.++..+++.+.++ +++|++++-++...+.+...+.. +....++.+|+.+...- . .-
T Consensus 4 ~~~~vlItGa-sg~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGA-SSGIGEGIARRFAAE--GARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3567777764 456677777776644 56899999998776665554432 22336777776644211 0 11
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|+|+.+..+
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 468999998754
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.66 E-value=18 Score=30.95 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+++|+=+|+|. .+..++..+... +++|+.+|.++...+.+
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKAL--GANVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 579999999864 555566666543 56999999998765544
No 455
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.61 E-value=7 Score=33.73 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE--EcchhhchhhhcCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI--NTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~--~~d~~~~~~~~~~~~fD 117 (256)
++.+|.=.|+ |.+++++++-... ....+|+|+|++++-.+.|++. |... +.. ...+.+.+.+.-++.+|
T Consensus 192 ~GstvAVfGL--G~VGLav~~Gaka-~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmTdgGvD 264 (375)
T KOG0022|consen 192 PGSTVAVFGL--GGVGLAVAMGAKA-AGASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMTDGGVD 264 (375)
T ss_pred CCCEEEEEec--chHHHHHHHhHHh-cCcccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHhcCCce
Confidence 4444444444 4444444443322 2346899999999999988764 3321 111 11233444444467777
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.-+-.- | ..+.+.++....+.| |.-+++-.
T Consensus 265 ysfEc~------------------------G---~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 265 YSFECI------------------------G---NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred EEEEec------------------------C---CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 765310 0 234556666666777 88777554
No 456
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.59 E-value=9.6 Score=31.23 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|+.++-+++..+...+.+...+....++..|+.+... .. .-
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGA--GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 578888888 4666677788776643 6799999999877766666565544444677777654321 10 11
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+.-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 568999988654
No 457
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.51 E-value=21 Score=30.39 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+||-.|+| .|..++.+++. .+..+++++.+++..+.+++ .+.+ .++...-...... ..+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~-----~G~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~-~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARA-----MGFETVAITRSPDKRELARK----LGAD-EVVDSGAELDEQA-AAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----hCCc-EEeccCCcchHHh-ccCCCCEE
Confidence 467788888875 44443333333 24689999999888776643 2222 1211111111101 12468988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-. ....+..+.+.|+++|.++.+.
T Consensus 230 i~~~~---------------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV---------------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC---------------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 76311 1245677788999999998764
No 458
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.43 E-value=9.4 Score=31.37 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.| |+|.++..+++.+.++ +++|+.++-++...+...+.+...+....++.+|+.+... .. ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEA--GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888 6778888888887654 5689999998877776666665544444677788765321 10 01
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999998654
No 459
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.38 E-value=12 Score=35.70 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=46.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+ |.|.++..+++.+.+. +..++.+|.|++.++.+++. + ..++.+|..+.. ....-++.|++++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~----g--~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIA--GFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF----G--MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEE--ecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc----C--CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 455554 5556666677777643 45799999999999988652 2 378889987652 2222357888887
No 460
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.37 E-value=11 Score=32.92 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+++.... -++ +|+++|.+++..+.+++ .+.. .++.. ++.+........
T Consensus 183 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 183 EPGSTVAVFGL--GAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FGAT-DFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-cEeccccccchHHHHHHHHhCC
Confidence 46788888875 5555544443332 244 79999999888877754 2332 12111 112222222224
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-..- -...+....+.|+++ |+++++..
T Consensus 254 g~d~vid~~g---------------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECTG---------------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 6899986310 124466677788885 99887643
No 461
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.31 E-value=5.5 Score=31.20 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|.=+|+ |.++..+++.+. .-+++|++.|.+........ .. .+...++.+.+. ..|+|+
T Consensus 34 l~g~tvgIiG~--G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~~~~----~~----~~~~~~l~ell~-----~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIGY--GRIGRAVARRLK--AFGMRVIGYDRSPKPEEGAD----EF----GVEYVSLDELLA-----QADIVS 96 (178)
T ss_dssp STTSEEEEEST--SHHHHHHHHHHH--HTT-EEEEEESSCHHHHHHH----HT----TEEESSHHHHHH-----H-SEEE
T ss_pred cCCCEEEEEEE--cCCcCeEeeeee--cCCceeEEecccCChhhhcc----cc----cceeeehhhhcc-----hhhhhh
Confidence 36788888866 566667777766 34789999999988655111 11 234445555432 579999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 188 (256)
...|....+..- +=......+|+|.+++=+..+.- ..+.+.+.+++
T Consensus 97 ~~~plt~~T~~l----------------------i~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTPETRGL----------------------INAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp E-SSSSTTTTTS----------------------BSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhcccccccee----------------------eeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 988875433211 11234557888887775332221 33456666655
No 462
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.14 E-value=11 Score=30.47 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=49.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhc--------hhhh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~--------~~~~- 111 (256)
++++|+=.|+ +|.++..+++.+.++ +.+|++++-++...+...+.+...+ ....++..|+.+. ....
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAA--GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 4678898984 677777788877653 5689999998877666655554332 1224444554321 1111
Q ss_pred --cCCCccEEEECCC
Q 025207 112 --LAGLVDVMVVNPP 124 (256)
Q Consensus 112 --~~~~fD~Ii~npP 124 (256)
..+.+|.|+.+.-
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 1156899998764
No 463
>PRK08589 short chain dehydrogenase; Validated
Probab=81.09 E-value=30 Score=28.69 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.|++. .++.++++.+.++ +++|++++.+ ...+...+.+...+.+..++..|+.+... .. .-
T Consensus 5 ~~k~vlItGas~-gIG~aia~~l~~~--G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGAST-GIGQASAIALAQE--GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467788777654 4567777776644 6789999988 44444444444334334666777654421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 5689999987554
No 464
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=81.08 E-value=25 Score=29.37 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=82.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC--------CCceEEEEeCCHHHHHHHHH-------------------------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEV--------PGVQYIATDINPYAVEVTRK------------------------- 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~--------~~~~v~giD~~~~~i~~a~~------------------------- 88 (256)
+...|+|+|-|+|...+.+.+...+.. ....+++++.+|.....+..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 667899999999998776666533221 13468888877654322221
Q ss_pred -HHHHcCC-cceEEEcchhhchhhhcCC--CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 89 -TLEAHNV-HADLINTDIASGLEKRLAG--LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 89 -~~~~~~~-~~~~~~~d~~~~~~~~~~~--~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+...+. ...+..+|+.+.+++.... .+|+.+.+- |.+. +.|. .| .+.++..+.+..+
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDg-FsP~-------kNP~-mW---------~~e~l~~~a~~~~ 199 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDG-FRPV-------KNPE-MW---------EDELLNLMARIPY 199 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCC-cccc-------CChh-hc---------cHHHHHHHHhhcC
Confidence 1111111 1167778877776653221 688887642 1111 1111 12 5688999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+||.+.- +.....+++-+++.||.....
T Consensus 200 ~~~~l~t----~ssA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 200 RDPTLAT----FAAAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred CCCceec----hHHHHHHHHHHHHcCceeeec
Confidence 9999875 445677899999999986443
No 465
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=81.03 E-value=40 Score=30.07 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.|.++..++..+.. +..|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 777777777766552 4689999999999988765
No 466
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=80.97 E-value=20 Score=30.66 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=50.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~fD 117 (256)
.+.+++=+.-|+|.++..+.+... ..++++++++.+++..+.+++ .+.+ .++. .++.+...... ...+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGAE-YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCccHHHHHHHHhCCCCCc
Confidence 344454442333444433333322 135689999999888777754 3433 2222 22222222221 23689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++...- ........+.|+++|+++.+..
T Consensus 215 ~vid~~g----------------------------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 215 IFFDAVG----------------------------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEEECCC----------------------------cHHHHHHHHhhCCCCEEEEEEe
Confidence 9976310 1113445667899999988653
No 467
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.80 E-value=31 Score=28.64 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=48.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.+. +++|+.++.+....+.+++.....+ ...++..|+.+... .. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG-SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhccC-CceEeecCCCCHHHHHHHHHHHHhh
Confidence 457888888876 37777788887654 5688888776432222222211111 12456667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 82 ~g~iD~linnAg~~ 95 (262)
T PRK07984 82 WPKFDGFVHSIGFA 95 (262)
T ss_pred cCCCCEEEECCccC
Confidence 25799999998654
No 468
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.73 E-value=13 Score=32.31 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4577777776 455677777777654 5789999999988877777666555554566677654321 11 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-+
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 679999998654
No 469
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=80.64 E-value=1.9 Score=41.34 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+..++|+..|.|.+.++.+.+ |+.|+++|++|.++-..+..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRL------G~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRL------GLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhc------CceeEEEecccHHHHHHHHHHh
Confidence 5689999999999999998887 6799999999999887777654
No 470
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.43 E-value=22 Score=26.72 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=52.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
.||=.|++ +.++.++++.+.++ .+..|+.+.-+ ....+.....+...+....+...|+.+... .. ..+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCC-CHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45556655 66677788877665 34478888887 566666656666566555788888654421 11 136
Q ss_pred CccEEEECCCCCC
Q 025207 115 LVDVMVVNPPYVP 127 (256)
Q Consensus 115 ~fD~Ii~npP~~~ 127 (256)
.+|++|.|.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 8999999887665
No 471
>PLN02780 ketoreductase/ oxidoreductase
Probab=80.05 E-value=38 Score=29.16 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhch----h---h-h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGL----E---K-R 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~----~---~-~ 111 (256)
.++.+|=.|+ +|.++.++++.+.++ +++|+.++.+++.++...+.+.... .....+..|+.+.. . + .
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~ 128 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARK--GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETI 128 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHh
Confidence 4678888885 555677788877654 5689999999988877766665431 22344555654211 1 1 1
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.....|+++.|..+
T Consensus 129 ~~~didilVnnAG~ 142 (320)
T PLN02780 129 EGLDVGVLINNVGV 142 (320)
T ss_pred cCCCccEEEEecCc
Confidence 11235588887654
No 472
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.88 E-value=37 Score=28.85 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=57.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eE-EEcchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~-~~~d~~~ 106 (256)
.+|-=||+| ..+..++..+. ..+..|+..|.+++.++.+.+.+... +. .. ++ ...|...
T Consensus 6 ~~V~ViGaG--~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAG--QMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred cEEEEEccc--HHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 467777776 44444444443 23679999999999998877665432 11 00 11 1222211
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEE
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLV 172 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~ 172 (256)
-...|+|+-.-| ...+.-..++..+..++ +|+.++.-.
T Consensus 82 ------~~~~d~ViEav~----------------------E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 82 ------FADRQLVIEAVV----------------------EDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred ------hCCCCEEEEecc----------------------cCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 145788887433 22445667788888888 677666543
No 473
>PRK05717 oxidoreductase; Validated
Probab=79.86 E-value=32 Score=28.14 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=49.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
..+++||=.|. +|.++..+++.+.++ +++|+.+|.++...+...+. .+....++..|+.+... .. .
T Consensus 8 ~~~k~vlItG~-sg~IG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 8 HNGRVALVTGA-ARGIGLGIAAWLIAE--GWQVVLADLDRERGSKVAKA---LGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cCCCEEEEeCC-cchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHH---cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678887775 577777888877654 56899999876544332222 22223567777765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.+..+.
T Consensus 82 ~g~id~li~~ag~~ 95 (255)
T PRK05717 82 FGRLDALVCNAAIA 95 (255)
T ss_pred hCCCCEEEECCCcc
Confidence 14689999987654
No 474
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.52 E-value=33 Score=28.14 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=49.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCCc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~f 116 (256)
+||=.|.+ |.++.++++.+.++ +++|+.++.++..++.+.+.+...+ ...++..|+.+... .. .-+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKK--GARVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 46666754 56677788877654 5789999999887776666554433 23566777654321 10 12579
Q ss_pred cEEEECCCC
Q 025207 117 DVMVVNPPY 125 (256)
Q Consensus 117 D~Ii~npP~ 125 (256)
|++|.|.-.
T Consensus 78 d~li~naG~ 86 (259)
T PRK08340 78 DALVWNAGN 86 (259)
T ss_pred CEEEECCCC
Confidence 999988654
No 475
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=79.34 E-value=24 Score=28.31 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----hcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----RLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~f 116 (256)
..+..|+|.|.--|.-++..|.++.+.+...+|.++|++-...+-+... .....++.++..+.... ...+.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3689999999999988888888766555457899999986654332221 11237888876554321 111222
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
--|+.. .+.....+....-++...++|.-|-++++..
T Consensus 144 ~kIfvi--------------------lDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 144 PKIFVI--------------------LDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CcEEEE--------------------ecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 222220 0111223334455677788888898888744
No 476
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.26 E-value=22 Score=31.05 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=55.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+..... ++ .++++|.++...+.+++ .+.. .++.. +..+.........+
T Consensus 185 ~~g~~vlI~g~--g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 185 RPGSSIAVFGA--GAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKE----LGAT-HVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-EEecCCCcCHHHHHHHHhCCCC
Confidence 46778888775 44444333333322 34 69999999887776654 2322 22221 22222222123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. ....+....+.|+++|+++.+..
T Consensus 256 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 256 DYALDTTG---------------------------VPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred cEEEECCC---------------------------CcHHHHHHHHHhccCCEEEEeCc
Confidence 99986311 02346777888999999887543
No 477
>PRK08278 short chain dehydrogenase; Provisional
Probab=79.18 E-value=34 Score=28.46 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHH-------HHHHHHHHHHcCCcceEEEcchhhchh--hhc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-------VEVTRKTLEAHNVHADLINTDIASGLE--KRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~-------i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~ 112 (256)
.++++|=.|+ +|.++..+++.+.++ ++.|+.++.+... ++...+.+...+....++..|+.+... ...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 4567887776 556677788877654 5688888866431 233333333334344566777655421 111
Q ss_pred ------CCCccEEEECCCCC
Q 025207 113 ------AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ------~~~fD~Ii~npP~~ 126 (256)
-+++|+++.+..+.
T Consensus 82 ~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHhCCCCEEEECCCCc
Confidence 14799999987654
No 478
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.12 E-value=24 Score=29.81 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=58.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEE-cchhhchhhhcCCCccEEE
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLIN-TDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~-~d~~~~~~~~~~~~fD~Ii 120 (256)
+|+=+|+| .++..++..|.+. +..|+.++-+++.++..++ .+... .... ......... ...+|+|+
T Consensus 2 ~I~IiG~G--~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vi 71 (304)
T PRK06522 2 KIAILGAG--AIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAE--LGPQDLVI 71 (304)
T ss_pred EEEEECCC--HHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhH--cCCCCEEE
Confidence 35556665 4555566665543 4589999987776655443 23311 1100 000111111 15789998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
..-+.. ....++..+...+.++..++....+....+.+.+.+
T Consensus 72 la~k~~------------------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 72 LAVKAY------------------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred Eecccc------------------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 743321 146778888888888877777666555444444444
No 479
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=79.07 E-value=9.2 Score=36.93 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhccccCeEEEEEEeCCCCHH--HHHHH-HHHcCCcEEEEE
Q 025207 151 VIDKILPSADKLLSKRGWLYLVTLTANDPS--QICLQ-MMEKGYAARIVV 197 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~-~~~~g~~~~~~~ 197 (256)
.+..+++.++++|+++|+++.......... .+... ..+.|+.....+
T Consensus 566 l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~ 615 (875)
T COG1743 566 LFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAW 615 (875)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeeccc
Confidence 445668889999999999988665333222 23333 556677665544
No 480
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.05 E-value=13 Score=30.47 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+...+....++..|+.+... . . .-
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4678888885 566677778777654 5689999998887766666665544444677777754321 1 0 01
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+|+.+.-+.
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 4689999987543
No 481
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=78.87 E-value=27 Score=30.13 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~fD 117 (256)
++.+||-.|+ |.++..+.+..... ++ .|++++.+++..+.+++ .+.. .++.. +..+.......+.+|
T Consensus 175 ~~~~vlI~g~--g~vg~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGA--GGLGLMALALLKAL--GPANIIVVDIDEAKLEAAKA----AGAD-VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----hCCc-EEecCCCccHHHHHHHHhCCCCc
Confidence 5678888764 55555555544432 44 78899988887776643 2332 22221 111222222223689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++.... ....+....+.|+++|+++.+.
T Consensus 246 ~vid~~g---------------------------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 246 AVIDFVN---------------------------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEEECCC---------------------------CHHHHHHHHHHhhcCCeEEEEC
Confidence 9987422 1245777888999999988753
No 482
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.65 E-value=29 Score=29.82 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=52.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+||-.|+ |.++..+++.+.. .++ .+++++-+++..+.+++ .+.+. .....++. ..... ..+.+
T Consensus 162 ~~g~~vlV~g~--g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGC--GPIGLMAIAVAKA--AGASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHcCCCCC
Confidence 46677777665 4444444443332 244 68888777766665543 23321 11111222 11111 23569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. -......+.+.|+++|+++...
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 233 DVVLEMSG---------------------------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEEc
Confidence 99987421 1234667778899999988754
No 483
>PRK06949 short chain dehydrogenase; Provisional
Probab=78.32 E-value=14 Score=30.18 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
..+++||=.| |+|.++..+++.+.++ +++|++++.+++.++.....+...+....++..|+.+... .. .
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQA--GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3568888888 6777788888887653 5689999999887766666554333334667777654311 10 1
Q ss_pred CCCccEEEECCCC
Q 025207 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
.+.+|+++.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 2468999997754
No 484
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.13 E-value=14 Score=30.52 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--hc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--RL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~------~ 113 (256)
+++++|=.| |+|.++..+++.+.++ +++|++++.+++..+...+.+...+....++..|+.+...- .. -
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEA--GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888888 5677888888877654 67999999988777665555544333346667776554210 00 1
Q ss_pred CCccEEEECCC
Q 025207 114 GLVDVMVVNPP 124 (256)
Q Consensus 114 ~~fD~Ii~npP 124 (256)
+++|+|+.+.-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 47899998754
No 485
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.98 E-value=28 Score=29.94 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=56.5
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-HHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEE
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-VTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~-~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+|.=+|+| .++..++..+...+....+..+|++++..+ .+.+........ ..+...|..+. ...|+|+.
T Consensus 2 kI~IIGaG--~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l------~~aDiVii 73 (308)
T cd05292 2 KVAIVGAG--FVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC------KGADVVVI 73 (308)
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHh------CCCCEEEE
Confidence 45667774 555555555544333357999999987654 333322111111 12333343221 46799998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+....+... ...+. ......+..+.+.+.+ ..|+|++++.+.
T Consensus 74 ta~~~~~~~~~------r~dl~--~~n~~i~~~~~~~l~~-~~~~giiiv~tN 117 (308)
T cd05292 74 TAGANQKPGET------RLDLL--KRNVAIFKEIIPQILK-YAPDAILLVVTN 117 (308)
T ss_pred ccCCCCCCCCC------HHHHH--HHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 76543222111 00000 0012234555666655 458899888653
No 486
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.94 E-value=17 Score=27.67 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=54.6
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Cc---c---eEEEcchhhchhhhcCCCcc
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VH---A---DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~---~---~~~~~d~~~~~~~~~~~~fD 117 (256)
|.=+|+|.+. .+++..+... +.+|+....+++.++..+++-. +. ++ . -....|+.+.. ...|
T Consensus 2 I~ViGaG~~G--~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~~t~dl~~a~-----~~ad 71 (157)
T PF01210_consen 2 IAVIGAGNWG--TALAALLADN--GHEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIKATTDLEEAL-----EDAD 71 (157)
T ss_dssp EEEESSSHHH--HHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEEEESSHHHHH-----TT-S
T ss_pred EEEECcCHHH--HHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCcccccccCHHHHh-----Cccc
Confidence 3445555554 4456665543 4589999999888776665421 11 11 1 12334444432 3569
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+..-|= .....+++++..+|+++-.+++...+.
T Consensus 72 ~IiiavPs------------------------~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 72 IIIIAVPS------------------------QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EEEE-S-G------------------------GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EEEecccH------------------------HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99875441 126788999999998877777654433
No 487
>PRK08177 short chain dehydrogenase; Provisional
Probab=77.88 E-value=15 Score=29.48 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=44.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCCCcc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~fD 117 (256)
++|+=.|+ +|.++..+++.+.+. +++|++++.++...+.+++ .+ ...+...|+.+.. .....+.+|
T Consensus 2 k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~----~~-~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 2 RTALIIGA-SRGLGLGLVDRLLER--GWQVTATVRGPQQDTALQA----LP-GVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CEEEEeCC-CchHHHHHHHHHHhC--CCEEEEEeCCCcchHHHHh----cc-ccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 34665565 667777778877654 5689999988765443322 11 2245556654431 112235799
Q ss_pred EEEECCCCC
Q 025207 118 VMVVNPPYV 126 (256)
Q Consensus 118 ~Ii~npP~~ 126 (256)
+|+.|....
T Consensus 74 ~vi~~ag~~ 82 (225)
T PRK08177 74 LLFVNAGIS 82 (225)
T ss_pred EEEEcCccc
Confidence 999987543
No 488
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=77.83 E-value=3.7 Score=38.47 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh-----chhh-hcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS-----GLEK-RLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~-----~~~~-~~~~ 114 (256)
.+...|||+||..|.+..-+++.|. .+.-|+|+|+-|--.- . ++.-++.|+.. .+.. ...-
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~p---v~slivGvDl~pikp~--~--------~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMP---VGSLIVGVDLVPIKPI--P--------NCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCC---CCceEEEeeeeecccC--C--------ccchhhhhhhHHHHHHHHHHHHHhC
Confidence 5789999999999999887777764 4678999998763210 0 00111122211 1111 1123
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
..|+|+.+.. +.++..|...++... ......+.-....|..||.++
T Consensus 110 ~advVLhDga------pnVg~~w~~DA~~q~----~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 110 KADVVLHDGA------PNVGGNWVQDAFQQA----CLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCcEEeecCC------CccchhHHHHHHHhh----HHHHHHHHHHHHHHHhcCccc
Confidence 4698887532 223334443333211 122344566677899999954
No 489
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.79 E-value=30 Score=29.33 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=45.0
Q ss_pred ceEEEcchhhchhhhcCCCc-cEEEECCCCCCCCCcccccccchhhhcCC-CCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 97 ADLINTDIASGLEKRLAGLV-DVMVVNPPYVPTPEDEVGREGIASAWAGG-ENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~f-D~Ii~npP~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++.++|+.+.... ..+= |+|.|+|||.+.+....- ...++ ....+....+++.+.++=...|+.++.+.
T Consensus 157 ~~i~~~df~~v~~~--a~~~~dfvY~DPPY~~~s~t~~f------~~Y~~~~f~~~~~~~La~~~~~l~~~~~i~~~~sn 228 (274)
T COG0338 157 ATIENGDFEEVLAD--ADSGDDFVYCDPPYLPLSATSNF------TAYGGNGFTEDQHLRLAEVLKELEGKRGISVLDSN 228 (274)
T ss_pred CeEEcCCHHHHHhh--ccCCCcEEEeCCCCCcccccccc------ccccCCCCChHHHHHHHHHHHhccccceEEEecCc
Confidence 37999999888653 2344 899999999986654210 11111 11222334444444443366677776443
Q ss_pred CCCCHHHHHHHHHH
Q 025207 175 TANDPSQICLQMME 188 (256)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (256)
. ...+...+.+.
T Consensus 229 ~--~~~~~~~ly~~ 240 (274)
T COG0338 229 S--DTEETRELYKQ 240 (274)
T ss_pred c--chHHHHHHHHh
Confidence 3 33445555544
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.76 E-value=30 Score=31.21 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
...+|+=+|+ |.++..+++.|.+. +..++.+|.+++.++.+++.. ....++.+|..+.. ....-..+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 4567776666 77777788877643 568999999999888766532 12367888876542 12223578988
Q ss_pred EECC
Q 025207 120 VVNP 123 (256)
Q Consensus 120 i~np 123 (256)
++-.
T Consensus 302 i~~~ 305 (453)
T PRK09496 302 IALT 305 (453)
T ss_pred EECC
Confidence 8743
No 491
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=77.75 E-value=9.4 Score=33.45 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=42.5
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..||.|+.-.| +........|..+...|+|||.++++.........+.+.++.++
T Consensus 75 ~~~d~~~~~~p----------------------k~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWP----------------------KNKQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECC----------------------CCHHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 57999998655 22344677889999999999999998877776677777777764
No 492
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.61 E-value=36 Score=27.54 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ +++|++++-++. +.+.+.+...+....++..|+.+... .. ..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~--G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEA--GADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788888875 45677788877654 568999887642 23333333333334667777655421 00 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.+|.+.-+.
T Consensus 79 ~~~d~li~~ag~~ 91 (248)
T TIGR01832 79 GHIDILVNNAGII 91 (248)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987554
No 493
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=77.45 E-value=52 Score=29.23 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC---CCceEEEEeC----CHHHHHHHHHHHHH----cCCcceEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEV---PGVQYIATDI----NPYAVEVTRKTLEA----HNVHADLIN 101 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~---~~~~v~giD~----~~~~i~~a~~~~~~----~~~~~~~~~ 101 (256)
.+..+|+|+|.|.|.-=..+.+.|..+. |..+|||++. +...++.+.+++.. .|++.+|..
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 5678999999999975555666665542 5688999999 77777777666543 466654433
No 494
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.29 E-value=4.3 Score=36.10 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=42.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++++++.+.+....++++|.++.--- ..|.. .......++.+.+.++|||++++=+
T Consensus 278 ~i~t~si~~~L~~~~~~s~~~~vL~D~---------------~Dwm~----~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 278 RIHTDSIEEVLRRLPPGSFDRFVLSDH---------------MDWMD----PEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred EEEeccHHHHHHhCCCCCeeEEEecch---------------hhhCC----HHHHHHHHHHHHHHhCCCCEEEEee
Confidence 899999999987666799998876211 11111 1236788899999999999999844
No 495
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.14 E-value=33 Score=29.46 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+|+-.|+ |.++..+.+.... .++. |++++.++...+.+++ .+... .....++.+..... ....+
T Consensus 160 ~~g~~vlI~~~--g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 160 ISGKSVLVTGA--GPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCC
Confidence 35667766554 4444444433332 2454 8888888777665543 23321 11122222222221 23468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-. -...+..+.+.|+++|+++...
T Consensus 232 d~vld~~g---------------------------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSG---------------------------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhhcCCCEEEEEc
Confidence 99986311 1244677788899999988754
No 496
>PRK05993 short chain dehydrogenase; Provisional
Probab=77.09 E-value=42 Score=27.96 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=48.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhh---cC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKR---LA 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~---~~ 113 (256)
+++||=.|+ +|.++..+++.+.++ +++|++++-+++.++.... .+ ..++..|+.+.. ... ..
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~--G~~Vi~~~r~~~~~~~l~~----~~--~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSD--GWRVFATCRKEEDVAALEA----EG--LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CC--ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467887786 577777888877654 6789999988876654332 22 256666765432 111 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+++.|.-+.
T Consensus 75 g~id~li~~Ag~~ 87 (277)
T PRK05993 75 GRLDALFNNGAYG 87 (277)
T ss_pred CCccEEEECCCcC
Confidence 5789999986543
No 497
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.08 E-value=38 Score=27.52 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--- 111 (256)
.+++|+=.| |+|.++.++++.+.++ ++.+..+ .-+.+..+.....+...+....++..|+.+... ..
T Consensus 5 ~~~~ilItG-asg~iG~~la~~l~~~--G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 5 DGKVALVTG-ASRGIGRAIAMRLAND--GALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 357788777 5788888888887654 4566654 344444433333333223334667777765421 10
Q ss_pred -----cCCCccEEEECCCC
Q 025207 112 -----LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -----~~~~fD~Ii~npP~ 125 (256)
.....|.|+.++-+
T Consensus 82 ~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred hccccCCCCccEEEECCCC
Confidence 01368999988744
No 498
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.19 E-value=5.3 Score=32.54 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc---------hhhhc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG---------LEKRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~---------~~~~~ 112 (256)
..+.||=.||..|.++.++++.+.+. ++.|+++--+-+-...... ..|+ .....|+.+. ...+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~--G~~V~AtaR~~e~M~~L~~---~~gl--~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARN--GYLVYATARRLEPMAQLAI---QFGL--KPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhC--CeEEEEEccccchHhhHHH---hhCC--eeEEeccCChHHHHHHHHHHhhCC
Confidence 56889999999999999999988754 6789988755433332221 1222 2233333221 22335
Q ss_pred CCCccEEEECC
Q 025207 113 AGLVDVMVVNP 123 (256)
Q Consensus 113 ~~~fD~Ii~np 123 (256)
+++.|+.+-|.
T Consensus 79 ~Gkld~L~NNA 89 (289)
T KOG1209|consen 79 DGKLDLLYNNA 89 (289)
T ss_pred CCceEEEEcCC
Confidence 68899998764
No 499
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=76.05 E-value=7.4 Score=33.82 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|.++.++++.+. ..+++|...|.++. ....+.. .+...++.+.+ .+.|+|+.+.|....+
T Consensus 153 G~GrIG~avA~r~~--~Fgm~v~y~~~~~~--~~~~~~~-------~~~y~~l~ell-----~~sDii~l~~Plt~~T-- 214 (324)
T COG1052 153 GLGRIGQAVARRLK--GFGMKVLYYDRSPN--PEAEKEL-------GARYVDLDELL-----AESDIISLHCPLTPET-- 214 (324)
T ss_pred CCCHHHHHHHHHHh--cCCCEEEEECCCCC--hHHHhhc-------CceeccHHHHH-----HhCCEEEEeCCCChHH--
Confidence 78899999999877 56889999998876 2222211 12222333332 3679999998875322
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHc
Q 025207 132 EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEK 189 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~ 189 (256)
..-+=......+|+|++++=+..+.- ....+.+.+++-
T Consensus 215 --------------------~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 215 --------------------RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred --------------------hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 22223456678999999886443322 345667777664
No 500
>PRK07904 short chain dehydrogenase; Provisional
Probab=75.74 E-value=27 Score=28.78 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHH-HHHHHHHHHHcCC-cceEEEcchhhchh------hh-
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNV-HADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~-i~~a~~~~~~~~~-~~~~~~~d~~~~~~------~~- 111 (256)
+.+++||=.|+ +|.++.++++.+.+++ +++|+.++-+++. .+.+.+.+...+- +..++..|+.+... ..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 45678888887 4566777887765432 3689998887664 5555444544332 33677777654321 11
Q ss_pred cCCCccEEEECCCCC
Q 025207 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+.+|+++.|....
T Consensus 84 ~~g~id~li~~ag~~ 98 (253)
T PRK07904 84 AGGDVDVAIVAFGLL 98 (253)
T ss_pred hcCCCCEEEEeeecC
Confidence 125799999876543
Done!