BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025209
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 148/202 (73%), Gaps = 6/202 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
LVYTVFSATDPKRSARDSHVP+
Sbjct: 175 LVYTVFSATDPKRSARDSHVPI 196
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 148/202 (73%), Gaps = 6/202 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
LVYTVFSATDPKRSARDSHVP+
Sbjct: 175 LVYTVFSATDPKRSARDSHVPI 196
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 148/202 (73%), Gaps = 6/202 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 138 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
LVYTVFSATDPKRSARDSHVP+
Sbjct: 198 LVYTVFSATDPKRSARDSHVPI 219
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 132/202 (65%), Positives = 147/202 (72%), Gaps = 6/202 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
L+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
LVYTVFSATDPKRSARDSHVP+
Sbjct: 198 LVYTVFSATDPKRSARDSHVPI 219
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 132/202 (65%), Positives = 147/202 (72%), Gaps = 6/202 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 20 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 79
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 80 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 133
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
L+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 134 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 193
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
LVYTVFSATDPKRSARDSHVP+
Sbjct: 194 LVYTVFSATDPKRSARDSHVPI 215
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 15/181 (8%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGI 133
A E K F+RA++AEF+A +G+K +QT NV +
Sbjct: 2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------V 52
Query: 134 AWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 193
+ AFG I L ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI ++
Sbjct: 53 SLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAIL 112
Query: 194 KAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVS 253
S T G N+LADG ++G GL EIIGT LV V + TD +R P++
Sbjct: 113 SGITSS-LTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLA 171
Query: 254 L 254
+
Sbjct: 172 I 172
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAF 137
A E K F+RA++AEF+A +G+ P K+ V + ++ AF
Sbjct: 2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAF 58
Query: 138 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ 197
G I L ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI ++
Sbjct: 59 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118
Query: 198 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARD 247
S G N LA G ++G GL EIIGT LV V + TD +R RD
Sbjct: 119 SSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD 165
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244
G G + + G GL E+I TF LV+T+F++ D KR+
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 161
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244
G G + + G GL E+I TF LV+T+F++ D KR+
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 161
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 102
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 103 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 160
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244
G G + + G GL E+I TF LV+T+F++ D KR+
Sbjct: 161 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 200
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + P V ++ I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMV 54
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ G
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-G 113
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244
G + + G GL E+I TF LV+T+F++ D KR+
Sbjct: 114 LGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 152
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
+ LV ISG H+NPAVTF + ++SL+RA+ YMVAQ LGA++G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP- 110
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSAR 246
R N L G S G EI T V +F+ D +R+ R
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
+ LV ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP- 110
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSAR 246
R N L G S G EI T V +F+ D +R+ R
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 50
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ + R
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 109
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSL 254
N L G S G EI T V +F+ D +R+ R V +++
Sbjct: 110 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 158
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 52
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ + R
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 111
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSL 254
N L G S G EI T V +F+ D +R+ R V +++
Sbjct: 112 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 160
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
E+ +F +A+ AEF+A + + S IL IA AFG
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGLA 53
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
I L +SGGHINPA+T L + ++SL+RA Y+ AQ +GAI+G G++
Sbjct: 54 IGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APL 112
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSA 245
R N L + + G + E+I TF L +F++TD +R++
Sbjct: 113 NARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL 192
I AFG I +Y ISG HINPAVT GL+ +K V Y++AQ LGA G +
Sbjct: 58 IGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFI 117
Query: 193 VKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSAR 246
GG GA G S + AE++GTF+L+ T+ +R+ +
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPK 172
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 187 ISGVGLV 193
I L+
Sbjct: 93 IVAAALL 99
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLV 193
I L+
Sbjct: 96 IVAAALL 102
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL 192
I AF I ++Y ISG HINPAVT L+ + V Y+VAQ +GA G L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 193 VKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244
A GG GA G G + E IGTF+L+ + +R+
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERA 171
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMV 180
G+G G+A AFG + + Y GISGGH NPAV+ GL +A + V Y++
Sbjct: 61 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVI 114
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 118 PAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVM 177
P G ++ I++ FG + V V+ T +SGG++NPAVT L LAR + R ++
Sbjct: 73 PETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGIL 132
Query: 178 YMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 237
Q + ++ G A AN L G S GL E GT +L TV
Sbjct: 133 MAFTQIVAGMAAAGAASAMTPGEIAF----ANALGGGASRTRGLFLEAFGTAILCLTVLM 188
Query: 238 ATDPKRSA 245
K A
Sbjct: 189 LAVEKHRA 196
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGV 190
+ + W G + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA
Sbjct: 44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAA 101
Query: 191 GLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVY 233
LV F+++++ G + +LA +ST A E++ T +L+
Sbjct: 102 ALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161
Query: 234 TVFSATD 240
+ + TD
Sbjct: 162 LILALTD 168
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 137 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA- 195
FG + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA LV
Sbjct: 48 FGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107
Query: 196 -------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSAT 239
F+++++ G + +LA +ST A E++ T +L+ + + T
Sbjct: 108 YYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALT 167
Query: 240 D 240
D
Sbjct: 168 D 168
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGV 190
L + W G +F + +A +SG H+N AV+ GL K L + +Y AQ LGA G
Sbjct: 46 LCLGW--GLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
Query: 191 GLV 193
V
Sbjct: 104 STV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,821,870
Number of Sequences: 62578
Number of extensions: 251643
Number of successful extensions: 701
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 59
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)